{ "name":"stir00001", "children":[ { "name":"09100 Metabolism", "children":[ { "name":"09101 Carbohydrate metabolism", "children":[ { "name":"00010 Glycolysis \/ Gluconeogenesis [PATH:stir00010]", "children":[ { "name":"DDW44_03950 glucokinase\tK25026 glk; glucokinase [EC:2.7.1.2]" }, { "name":"DDW44_13815 sugar kinase\tK25026 glk; glucokinase [EC:2.7.1.2]" }, { "name":"DDW44_26105 glucokinase\tK25026 glk; glucokinase [EC:2.7.1.2]" }, { "name":"DDW44_29900 hypothetical protein\tK25026 glk; glucokinase [EC:2.7.1.2]" }, { "name":"DDW44_02920 glucose-6-phosphate isomerase\tK01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]" }, { "name":"DDW44_01695 ATP-dependent 6-phosphofructokinase\tK21071 pfk; ATP-dependent phosphofructokinase \/ diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]" }, { "name":"DDW44_03915 6-phosphofructokinase\tK21071 pfk; ATP-dependent phosphofructokinase \/ diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]" }, { "name":"DDW44_21290 6-phosphofructokinase\tK21071 pfk; ATP-dependent phosphofructokinase \/ diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]" }, { "name":"DDW44_19635 glpX; class II fructose-bisphosphatase\tK02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]" }, { "name":"DDW44_00785 ketose-bisphosphate aldolase\tK01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]" }, { "name":"DDW44_05435 class II fructose-bisphosphate aldolase\tK01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]" }, { "name":"DDW44_02935 triose-phosphate isomerase\tK01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]" }, { "name":"DDW44_02945 gap; type I glyceraldehyde-3-phosphate dehydrogenase\tK00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]" }, { "name":"DDW44_29170 glyceraldehyde-3-phosphate dehydrogenase\tK00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]" }, { "name":"DDW44_02940 pgk; phosphoglycerate kinase\tK00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]" }, { "name":"DDW44_06385 phosphoglyceromutase\tK01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]" }, { "name":"DDW44_11870 phosphopyruvate hydratase\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" }, { "name":"DDW44_03250 pyk; pyruvate kinase\tK00873 PK; pyruvate kinase [EC:2.7.1.40]" }, { "name":"DDW44_21275 pyk; pyruvate kinase\tK00873 PK; pyruvate kinase [EC:2.7.1.40]" }, { "name":"DDW44_00670 pyruvate, phosphate dikinase\tK01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]" }, { "name":"DDW44_07865 pyruvate, phosphate dikinase\tK01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]" }, { "name":"DDW44_04225 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type\tK00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]" }, { "name":"DDW44_06000 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type\tK00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]" }, { "name":"DDW44_04205 lpdA; dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" }, { "name":"DDW44_17575 2-oxoglutarate ferredoxin oxidoreductase subunit alpha\tK00174 korA; 2-oxoglutarate\/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]" }, { "name":"DDW44_23695 2-oxoglutarate ferredoxin oxidoreductase subunit alpha\tK00174 korA; 2-oxoglutarate\/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]" }, { "name":"DDW44_17570 2-oxoacid:ferredoxin oxidoreductase subunit beta\tK00175 korB; 2-oxoglutarate\/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]" }, { "name":"DDW44_23690 2-oxoacid:ferredoxin oxidoreductase subunit beta\tK00175 korB; 2-oxoglutarate\/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]" }, { "name":"DDW44_02585 alcohol dehydrogenase\tK00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase \/ alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]" }, { "name":"DDW44_04725 Zn-dependent alcohol dehydrogenase\tK00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase \/ alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]" }, { "name":"DDW44_01395 zinc-binding alcohol dehydrogenase family protein\tK13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]" }, { "name":"DDW44_19125 NAD(P)-dependent alcohol dehydrogenase\tK13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]" }, { "name":"DDW44_02590 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_04850 aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_12765 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_16710 aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_18985 betaine-aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_31145 hypothetical protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_29265 aldehyde dehydrogenase\tK00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]" }, { "name":"DDW44_16365 acs; acetate--CoA ligase\tK01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]" }, { "name":"DDW44_13220 pimeloyl-CoA synthetase\tK24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]" }, { "name":"DDW44_05425 aldose epimerase\tK01785 galM; aldose 1-epimerase [EC:5.1.3.3]" }, { "name":"DDW44_29105 alpha-D-glucose phosphate-specific phosphoglucomutase\tK01835 pgm; phosphoglucomutase [EC:5.4.2.2]" }, { "name":"DDW44_19665 polyphosphate glucokinase\tK00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]" }, { "name":"DDW44_19330 phosphoenolpyruvate carboxykinase (GTP)\tK01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]" }, { "name":"DDW44_08570 6-phospho-beta-glucosidase\tK01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86]" }, { "name":"DDW44_26935 6-phospho-beta-glucosidase\tK01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86]" }, { "name":"DDW44_10950 phosphoenolpyruvate--carbohydrate phosphotransferase\tK02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]" } ] }, { "name":"00020 Citrate cycle (TCA cycle) [PATH:stir00020]", "children":[ { "name":"DDW44_08795 citrate (Si)-synthase\tK01647 CS; citrate synthase [EC:2.3.3.1]" }, { "name":"DDW44_13420 citrate synthase\tK01647 CS; citrate synthase [EC:2.3.3.1]" }, { "name":"DDW44_24230 acnA; aconitate hydratase AcnA\tK27802 acnA; aconitate hydratase A \/ 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]" }, { "name":"DDW44_01375 NADP-dependent isocitrate dehydrogenase\tK00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]" }, { "name":"DDW44_20685 kgd; multifunctional oxoglutarate decarboxylase\/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit\/dihydrolipoyllysine-residue succinyltransferase subunit\tK01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]" }, { "name":"DDW44_04205 lpdA; dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" }, { "name":"DDW44_17575 2-oxoglutarate ferredoxin oxidoreductase subunit alpha\tK00174 korA; 2-oxoglutarate\/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]" }, { "name":"DDW44_23695 2-oxoglutarate ferredoxin oxidoreductase subunit alpha\tK00174 korA; 2-oxoglutarate\/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]" }, { "name":"DDW44_17570 2-oxoacid:ferredoxin oxidoreductase subunit beta\tK00175 korB; 2-oxoglutarate\/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]" }, { "name":"DDW44_23690 2-oxoacid:ferredoxin oxidoreductase subunit beta\tK00175 korB; 2-oxoglutarate\/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]" }, { "name":"DDW44_18510 succinate--CoA ligase subunit alpha\tK01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]" }, { "name":"DDW44_18505 ADP-forming succinate--CoA ligase subunit beta\tK01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]" }, { "name":"DDW44_18730 succinate dehydrogenase flavoprotein subunit\tK00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]" }, { "name":"DDW44_19820 fumarate reductase\/succinate dehydrogenase flavoprotein subunit\tK00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]" }, { "name":"DDW44_28425 fumarate reductase\/succinate dehydrogenase flavoprotein subunit\tK00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]" }, { "name":"DDW44_18725 succinate dehydrogenase iron-sulfur subunit\tK00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]" }, { "name":"DDW44_19815 succinate dehydrogenase\/fumarate reductase iron-sulfur subunit\tK00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]" }, { "name":"DDW44_28430 succinate dehydrogenase\/fumarate reductase iron-sulfur subunit\tK00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]" }, { "name":"DDW44_18740 sdhC; succinate dehydrogenase, cytochrome b556 subunit\tK00241 sdhC; succinate dehydrogenase cytochrome b subunit" }, { "name":"DDW44_28420 succinate dehydrogenase\tK00241 sdhC; succinate dehydrogenase cytochrome b subunit" }, { "name":"DDW44_18735 succinate dehydrogenase\tK00242 sdhD; succinate dehydrogenase membrane anchor subunit" }, { "name":"DDW44_19620 fumarate hydratase\tK01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]" }, { "name":"DDW44_19615 aspA; aspartate ammonia-lyase\tK01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]" }, { "name":"DDW44_18565 malate dehydrogenase\tK00024 mdh; malate dehydrogenase [EC:1.1.1.37]" }, { "name":"DDW44_00555 pyruvate carboxylase\tK01958 PC; pyruvate carboxylase [EC:6.4.1.1]" }, { "name":"DDW44_19330 phosphoenolpyruvate carboxykinase (GTP)\tK01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]" }, { "name":"DDW44_04225 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type\tK00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]" }, { "name":"DDW44_06000 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type\tK00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]" } ] }, { "name":"00030 Pentose phosphate pathway [PATH:stir00030]", "children":[ { "name":"DDW44_02920 glucose-6-phosphate isomerase\tK01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]" }, { "name":"DDW44_02885 glucose-6-phosphate dehydrogenase\tK00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]" }, { "name":"DDW44_24675 zwf; glucose-6-phosphate dehydrogenase\tK00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]" }, { "name":"DDW44_02895 pgl; 6-phosphogluconolactonase\tK01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]" }, { "name":"DDW44_15095 gnd; decarboxylating 6-phosphogluconate dehydrogenase\tK00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]" }, { "name":"DDW44_24670 gnd; decarboxylating 6-phosphogluconate dehydrogenase\tK00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]" }, { "name":"DDW44_28260 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating)\tK00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]" }, { "name":"DDW44_11335 rpe; ribulose-phosphate 3-epimerase\tK01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]" }, { "name":"DDW44_02875 transketolase\tK00615 E2.2.1.1; transketolase [EC:2.2.1.1]" }, { "name":"DDW44_24665 tkt; transketolase\tK00615 E2.2.1.1; transketolase [EC:2.2.1.1]" }, { "name":"DDW44_27470 transketolase\tK00615 E2.2.1.1; transketolase [EC:2.2.1.1]" }, { "name":"DDW44_29365 transketolase\tK00615 E2.2.1.1; transketolase [EC:2.2.1.1]" }, { "name":"DDW44_02880 tal; transaldolase\tK00616 TALDO1; transaldolase [EC:2.2.1.2]" }, { "name":"DDW44_08445 ribose-5-phosphate isomerase\tK01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]" }, { "name":"DDW44_18990 deoC; deoxyribose-phosphate aldolase\tK01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]" }, { "name":"DDW44_30300 ribokinase\tK00852 rbsK; ribokinase [EC:2.7.1.15]" }, { "name":"DDW44_29105 alpha-D-glucose phosphate-specific phosphoglucomutase\tK01835 pgm; phosphoglucomutase [EC:5.4.2.2]" }, { "name":"DDW44_12060 ribose-phosphate diphosphokinase\tK00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]" }, { "name":"DDW44_26075 sugar dehydrogenase\tK00034 gdh; glucose 1-dehydrogenase [EC:1.1.1.47]" }, { "name":"DDW44_02460 gluconate kinase\tK00851 idnK; gluconokinase [EC:2.7.1.12]" }, { "name":"DDW44_00785 ketose-bisphosphate aldolase\tK01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]" }, { "name":"DDW44_05435 class II fructose-bisphosphate aldolase\tK01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]" }, { "name":"DDW44_19635 glpX; class II fructose-bisphosphatase\tK02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]" }, { "name":"DDW44_01695 ATP-dependent 6-phosphofructokinase\tK21071 pfk; ATP-dependent phosphofructokinase \/ diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]" }, { "name":"DDW44_03915 6-phosphofructokinase\tK21071 pfk; ATP-dependent phosphofructokinase \/ diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]" }, { "name":"DDW44_21290 6-phosphofructokinase\tK21071 pfk; ATP-dependent phosphofructokinase \/ diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]" } ] }, { "name":"00040 Pentose and glucuronate interconversions [PATH:stir00040]", "children":[ { "name":"DDW44_10305 UDP-glucose\/GDP-mannose dehydrogenase family protein\tK00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]" }, { "name":"DDW44_12425 galU; UTP--glucose-1-phosphate uridylyltransferase\tK00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]" }, { "name":"DDW44_11335 rpe; ribulose-phosphate 3-epimerase\tK01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]" }, { "name":"DDW44_06350 sugar kinase\tK00854 xylB; xylulokinase [EC:2.7.1.17]" }, { "name":"DDW44_08240 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase\tK21681 bcs1; ribitol-5-phosphate 2-dehydrogenase (NADP+) \/ D-ribitol-5-phosphate cytidylyltransferase [EC:1.1.1.405 2.7.7.40]" }, { "name":"DDW44_07715 fuculose phosphate aldolase\tK01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]" } ] }, { "name":"00051 Fructose and mannose metabolism [PATH:stir00051]", "children":[ { "name":"DDW44_02990 carbohydrate kinase\tK00847 E2.7.1.4; fructokinase [EC:2.7.1.4]" }, { "name":"DDW44_10165 manA; mannose-6-phosphate isomerase, class I\tK01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]" }, { "name":"DDW44_10180 phosphomannomutase\/phosphoglucomutase\tK01840 manB; phosphomannomutase [EC:5.4.2.8]" }, { "name":"DDW44_19005 phosphomannomutase\tK01840 manB; phosphomannomutase [EC:5.4.2.8]" }, { "name":"DDW44_10925 mannose-1-phosphate guanyltransferase\tK16881 K16881; mannose-1-phosphate guanylyltransferase \/ phosphomannomutase [EC:2.7.7.13 5.4.2.8]" }, { "name":"DDW44_10230 GDP-mannose pyrophosphorylase\tK00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]" }, { "name":"DDW44_25820 gmd; GDP-mannose 4,6-dehydratase\tK01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]" }, { "name":"DDW44_25810 GDP-fucose synthetase\tK02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]" }, { "name":"DDW44_07715 fuculose phosphate aldolase\tK01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]" }, { "name":"DDW44_01695 ATP-dependent 6-phosphofructokinase\tK21071 pfk; ATP-dependent phosphofructokinase \/ diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]" }, { "name":"DDW44_03915 6-phosphofructokinase\tK21071 pfk; ATP-dependent phosphofructokinase \/ diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]" }, { "name":"DDW44_21290 6-phosphofructokinase\tK21071 pfk; ATP-dependent phosphofructokinase \/ diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]" }, { "name":"DDW44_19635 glpX; class II fructose-bisphosphatase\tK02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]" }, { "name":"DDW44_12545 pfkB; 1-phosphofructokinase\tK00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]" }, { "name":"DDW44_00785 ketose-bisphosphate aldolase\tK01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]" }, { "name":"DDW44_05435 class II fructose-bisphosphate aldolase\tK01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]" }, { "name":"DDW44_02935 triose-phosphate isomerase\tK01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]" }, { "name":"DDW44_08445 ribose-5-phosphate isomerase\tK01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]" }, { "name":"DDW44_12540 hypothetical protein\tK02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]" }, { "name":"DDW44_05680 HAD family hydrolase\tK19270 hxpA; mannitol-1-\/sugar-\/sorbitol-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50]" } ] }, { "name":"00052 Galactose metabolism [PATH:stir00052]", "children":[ { "name":"DDW44_05425 aldose epimerase\tK01785 galM; aldose 1-epimerase [EC:5.1.3.3]" }, { "name":"DDW44_26650 galK; galactokinase\tK00849 galK; galactokinase [EC:2.7.1.6]" }, { "name":"DDW44_26655 galT; galactose-1-phosphate uridylyltransferase\tK00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]" }, { "name":"DDW44_08290 galE; UDP-glucose 4-epimerase GalE\tK01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]" }, { "name":"DDW44_12125 galE; UDP-glucose 4-epimerase GalE\tK01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]" }, { "name":"DDW44_17135 NAD-dependent dehydratase\tK01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]" }, { "name":"DDW44_27200 galE; UDP-glucose 4-epimerase GalE\tK01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]" }, { "name":"DDW44_12425 galU; UTP--glucose-1-phosphate uridylyltransferase\tK00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]" }, { "name":"DDW44_29105 alpha-D-glucose phosphate-specific phosphoglucomutase\tK01835 pgm; phosphoglucomutase [EC:5.4.2.2]" }, { "name":"DDW44_03950 glucokinase\tK25026 glk; glucokinase [EC:2.7.1.2]" }, { "name":"DDW44_13815 sugar kinase\tK25026 glk; glucokinase [EC:2.7.1.2]" }, { "name":"DDW44_26105 glucokinase\tK25026 glk; glucokinase [EC:2.7.1.2]" }, { "name":"DDW44_29900 hypothetical protein\tK25026 glk; glucokinase [EC:2.7.1.2]" }, { "name":"DDW44_26625 beta-galactosidase\tK12308 bgaB; beta-galactosidase [EC:3.2.1.23]" }, { "name":"DDW44_26620 alpha-galactosidase\tK07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]" }, { "name":"DDW44_01695 ATP-dependent 6-phosphofructokinase\tK21071 pfk; ATP-dependent phosphofructokinase \/ diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]" }, { "name":"DDW44_03915 6-phosphofructokinase\tK21071 pfk; ATP-dependent phosphofructokinase \/ diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]" }, { "name":"DDW44_21290 6-phosphofructokinase\tK21071 pfk; ATP-dependent phosphofructokinase \/ diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]" }, { "name":"DDW44_01060 DUF3459 domain-containing protein\tK01187 malZ; alpha-glucosidase [EC:3.2.1.20]" }, { "name":"DDW44_04405 alpha-glucosidase\tK01187 malZ; alpha-glucosidase [EC:3.2.1.20]" }, { "name":"DDW44_04425 alpha-glucosidase\tK01187 malZ; alpha-glucosidase [EC:3.2.1.20]" }, { "name":"DDW44_10970 glycosyl hydrolase\tK01187 malZ; alpha-glucosidase [EC:3.2.1.20]" } ] }, { "name":"00053 Ascorbate and aldarate metabolism [PATH:stir00053]", "children":[ { "name":"DDW44_10305 UDP-glucose\/GDP-mannose dehydrogenase family protein\tK00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]" }, { "name":"DDW44_02590 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_04850 aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_12765 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_16710 aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_18985 betaine-aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_31145 hypothetical protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_00065 epimerase\tK18981 udh; uronate dehydrogenase [EC:1.1.1.203]" } ] }, { "name":"00500 Starch and sucrose metabolism [PATH:stir00500]", "children":[ { "name":"DDW44_01060 DUF3459 domain-containing protein\tK01187 malZ; alpha-glucosidase [EC:3.2.1.20]" }, { "name":"DDW44_04405 alpha-glucosidase\tK01187 malZ; alpha-glucosidase [EC:3.2.1.20]" }, { "name":"DDW44_04425 alpha-glucosidase\tK01187 malZ; alpha-glucosidase [EC:3.2.1.20]" }, { "name":"DDW44_10970 glycosyl hydrolase\tK01187 malZ; alpha-glucosidase [EC:3.2.1.20]" }, { "name":"DDW44_12425 galU; UTP--glucose-1-phosphate uridylyltransferase\tK00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]" }, { "name":"DDW44_09105 beta-glucosidase\tK05350 bglB; beta-glucosidase [EC:3.2.1.21]" }, { "name":"DDW44_24645 beta-glucosidase\tK05350 bglB; beta-glucosidase [EC:3.2.1.21]" }, { "name":"DDW44_09350 endoglucanase\tK01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]" }, { "name":"DDW44_11265 endoglucanase\tK01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]" }, { "name":"DDW44_08570 6-phospho-beta-glucosidase\tK01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86]" }, { "name":"DDW44_26935 6-phospho-beta-glucosidase\tK01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86]" }, { "name":"DDW44_21345 1,4-alpha-glucan branching enzyme\tK00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]" }, { "name":"DDW44_21365 DUF3417 domain-containing protein\tK00688 PYG; glycogen phosphorylase [EC:2.4.1.1]" }, { "name":"DDW44_04395 glycosidase\tK01176 AMY; alpha-amylase [EC:3.2.1.1]" }, { "name":"DDW44_21355 treS; maltose alpha-D-glucosyltransferase\tK05343 treS; maltose alpha-D-glucosyltransferase \/ alpha-amylase [EC:5.4.99.16 3.2.1.1]" }, { "name":"DDW44_08535 malQ; 4-alpha-glucanotransferase\tK00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]" }, { "name":"DDW44_21350 maltokinase\tK16146 pep2; maltokinase [EC:2.7.1.175]" }, { "name":"DDW44_21360 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase\tK16147 glgE; starch synthase (maltosyl-transferring) [EC:2.4.99.16]" }, { "name":"DDW44_10950 phosphoenolpyruvate--carbohydrate phosphotransferase\tK02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]" }, { "name":"DDW44_21400 glgX; glycogen debranching enzyme GlgX\tK01214 ISA; isoamylase [EC:3.2.1.68]" }, { "name":"DDW44_24695 glgX; glycogen debranching enzyme GlgX\tK01214 ISA; isoamylase [EC:3.2.1.68]" }, { "name":"DDW44_24690 treY; malto-oligosyltrehalose synthase\tK06044 treY; (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase [EC:5.4.99.15]" }, { "name":"DDW44_24640 treZ; malto-oligosyltrehalose trehalohydrolase\tK01236 treZ; maltooligosyltrehalose trehalohydrolase [EC:3.2.1.141]" }, { "name":"DDW44_13795 trehalose-6-phosphate synthase\tK00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]" }, { "name":"DDW44_13800 otsB; trehalose-phosphatase\tK01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12]" }, { "name":"DDW44_29105 alpha-D-glucose phosphate-specific phosphoglucomutase\tK01835 pgm; phosphoglucomutase [EC:5.4.2.2]" }, { "name":"DDW44_03950 glucokinase\tK25026 glk; glucokinase [EC:2.7.1.2]" }, { "name":"DDW44_13815 sugar kinase\tK25026 glk; glucokinase [EC:2.7.1.2]" }, { "name":"DDW44_26105 glucokinase\tK25026 glk; glucokinase [EC:2.7.1.2]" }, { "name":"DDW44_29900 hypothetical protein\tK25026 glk; glucokinase [EC:2.7.1.2]" }, { "name":"DDW44_02920 glucose-6-phosphate isomerase\tK01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]" }, { "name":"DDW44_02990 carbohydrate kinase\tK00847 E2.7.1.4; fructokinase [EC:2.7.1.4]" } ] }, { "name":"00620 Pyruvate metabolism [PATH:stir00620]", "children":[ { "name":"DDW44_16365 acs; acetate--CoA ligase\tK01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]" }, { "name":"DDW44_17575 2-oxoglutarate ferredoxin oxidoreductase subunit alpha\tK00174 korA; 2-oxoglutarate\/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]" }, { "name":"DDW44_23695 2-oxoglutarate ferredoxin oxidoreductase subunit alpha\tK00174 korA; 2-oxoglutarate\/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]" }, { "name":"DDW44_17570 2-oxoacid:ferredoxin oxidoreductase subunit beta\tK00175 korB; 2-oxoglutarate\/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]" }, { "name":"DDW44_23690 2-oxoacid:ferredoxin oxidoreductase subunit beta\tK00175 korB; 2-oxoglutarate\/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]" }, { "name":"DDW44_04225 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type\tK00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]" }, { "name":"DDW44_06000 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type\tK00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]" }, { "name":"DDW44_04205 lpdA; dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" }, { "name":"DDW44_01590 acetaldehyde dehydrogenase (acetylating)\tK04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10]" }, { "name":"DDW44_01395 zinc-binding alcohol dehydrogenase family protein\tK13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]" }, { "name":"DDW44_02585 alcohol dehydrogenase\tK00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase \/ alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]" }, { "name":"DDW44_04725 Zn-dependent alcohol dehydrogenase\tK00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase \/ alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]" }, { "name":"DDW44_19125 NAD(P)-dependent alcohol dehydrogenase\tK13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]" }, { "name":"DDW44_21280 acetate kinase\tK00925 ackA; acetate kinase [EC:2.7.2.1]" }, { "name":"DDW44_21285 phosphate acetyltransferase\tK13788 pta; phosphate acetyltransferase [EC:2.3.1.8]" }, { "name":"DDW44_03250 pyk; pyruvate kinase\tK00873 PK; pyruvate kinase [EC:2.7.1.40]" }, { "name":"DDW44_21275 pyk; pyruvate kinase\tK00873 PK; pyruvate kinase [EC:2.7.1.40]" }, { "name":"DDW44_19035 acetyl-\/propionyl-CoA carboxylase subunit alpha\tK11263 bccA; acetyl-CoA\/propionyl-CoA\/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]" }, { "name":"DDW44_09425 acylphosphatase\tK01512 acyP; acylphosphatase [EC:3.6.1.7]" }, { "name":"DDW44_22120 acylphosphatase\tK01512 acyP; acylphosphatase [EC:3.6.1.7]" }, { "name":"DDW44_02590 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_04850 aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_12765 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_16710 aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_18985 betaine-aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_31145 hypothetical protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_29265 aldehyde dehydrogenase\tK00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]" }, { "name":"DDW44_13220 pimeloyl-CoA synthetase\tK24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]" }, { "name":"DDW44_24890 pyruvate dehydrogenase\tK00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1]" }, { "name":"DDW44_11535 MBL fold metallo-hydrolase\tK01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]" }, { "name":"DDW44_09770 NAD-dependent malic enzyme\tK00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]" }, { "name":"DDW44_20635 NADP-dependent malic enzyme\tK00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]" }, { "name":"DDW44_00555 pyruvate carboxylase\tK01958 PC; pyruvate carboxylase [EC:6.4.1.1]" }, { "name":"DDW44_18565 malate dehydrogenase\tK00024 mdh; malate dehydrogenase [EC:1.1.1.37]" }, { "name":"DDW44_19620 fumarate hydratase\tK01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]" }, { "name":"DDW44_19615 aspA; aspartate ammonia-lyase\tK01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]" }, { "name":"DDW44_12080 phosphoenolpyruvate carboxylase\tK01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]" }, { "name":"DDW44_19330 phosphoenolpyruvate carboxykinase (GTP)\tK01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]" }, { "name":"DDW44_00670 pyruvate, phosphate dikinase\tK01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]" }, { "name":"DDW44_07865 pyruvate, phosphate dikinase\tK01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]" }, { "name":"DDW44_25485 malate synthase A\tK01638 aceB; malate synthase [EC:2.3.3.9]" }, { "name":"DDW44_25930 malate synthase A\tK01638 aceB; malate synthase [EC:2.3.3.9]" }, { "name":"DDW44_11800 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_12820 acetyl-CoA C-acyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_21175 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_27075 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_29685 thiolase domain-containing protein\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_07960 leuA; 2-isopropylmalate synthase\tK01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]" }, { "name":"DDW44_21870 citramalate synthase\tK01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]" }, { "name":"DDW44_16575 isopropylmalate synthase\tK02594 nifV; homocitrate synthase NifV [EC:2.3.3.14]" } ] }, { "name":"00630 Glyoxylate and dicarboxylate metabolism [PATH:stir00630]", "children":[ { "name":"DDW44_25490 isocitrate lyase\tK01637 ICL; isocitrate\/methylisocitrate lyase [EC:4.1.3.1 4.1.3.30]" }, { "name":"DDW44_25485 malate synthase A\tK01638 aceB; malate synthase [EC:2.3.3.9]" }, { "name":"DDW44_25930 malate synthase A\tK01638 aceB; malate synthase [EC:2.3.3.9]" }, { "name":"DDW44_18565 malate dehydrogenase\tK00024 mdh; malate dehydrogenase [EC:1.1.1.37]" }, { "name":"DDW44_08795 citrate (Si)-synthase\tK01647 CS; citrate synthase [EC:2.3.3.1]" }, { "name":"DDW44_13420 citrate synthase\tK01647 CS; citrate synthase [EC:2.3.3.1]" }, { "name":"DDW44_24230 acnA; aconitate hydratase AcnA\tK27802 acnA; aconitate hydratase A \/ 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]" }, { "name":"DDW44_16365 acs; acetate--CoA ligase\tK01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]" }, { "name":"DDW44_11800 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_12820 acetyl-CoA C-acyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_21175 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_27075 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_29685 thiolase domain-containing protein\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_21170 mce; methylmalonyl-CoA epimerase\tK05606 MCEE; methylmalonyl-CoA\/ethylmalonyl-CoA epimerase [EC:5.1.99.1]" }, { "name":"DDW44_26345 protein meaA\tK14447 ecm; ethylmalonyl-CoA mutase [EC:5.4.99.63]" }, { "name":"DDW44_19035 acetyl-\/propionyl-CoA carboxylase subunit alpha\tK11263 bccA; acetyl-CoA\/propionyl-CoA\/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]" }, { "name":"DDW44_19055 acyl-CoA carboxylase subunit beta\tK27094 accD5; propionyl-CoA\/long-chain acyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.3 6.4.1.- 2.1.3.15]" }, { "name":"DDW44_19050 acyl-CoA carboxylase subunit epsilon\tK27095 accE5; acyl-CoA carboxylase epsilon subunit" }, { "name":"DDW44_28950 mutA; methylmalonyl-CoA mutase small subunit\tK01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]" }, { "name":"DDW44_28955 methylmalonyl-CoA mutase\tK01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]" }, { "name":"DDW44_18795 methylmalonyl-CoA mutase\tK01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2]" }, { "name":"DDW44_27530 hypothetical protein\tK19268 glmE; methylaspartate mutase epsilon subunit [EC:5.4.99.1]" }, { "name":"DDW44_27525 methylaspartate mutase\tK01846 glmS; methylaspartate mutase sigma subunit [EC:5.4.99.1]" }, { "name":"DDW44_09655 FAD-binding oxidoreductase\tK00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14]" }, { "name":"DDW44_19600 catalase\tK03781 katE; catalase [EC:1.11.1.6]" }, { "name":"DDW44_20350 catalase\tK03781 katE; catalase [EC:1.11.1.6]" }, { "name":"DDW44_25665 catalase\tK03781 katE; catalase [EC:1.11.1.6]" }, { "name":"DDW44_13630 HAD family hydrolase\tK01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]" }, { "name":"DDW44_00430 transcriptional regulator\tK05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]" }, { "name":"DDW44_02115 glutamine synthetase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"DDW44_04295 glnA; type I glutamate--ammonia ligase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"DDW44_04360 glutamine synthetase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"DDW44_04460 glutamine synthetase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"DDW44_18625 glyA; serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"DDW44_21010 serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"DDW44_21445 serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"DDW44_10875 gcvP; glycine dehydrogenase (aminomethyl-transferring)\tK00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]" }, { "name":"DDW44_21455 gcvT; glycine cleavage system aminomethyltransferase GcvT\tK00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]" }, { "name":"DDW44_04205 lpdA; dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" }, { "name":"DDW44_21450 gcvH; glycine cleavage system protein GcvH\tK02437 gcvH; glycine cleavage system H protein" }, { "name":"DDW44_25610 gcl; glyoxylate carboligase\tK01608 gcl; tartronate-semialdehyde synthase [EC:4.1.1.47]" }, { "name":"DDW44_25675 hydroxypyruvate isomerase\tK01816 hyi; hydroxypyruvate isomerase [EC:5.3.1.22]" }, { "name":"DDW44_25670 2-hydroxy-3-oxopropionate reductase\tK00042 garR; 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60]" }, { "name":"DDW44_26295 glycerate kinase\tK00865 glxK; glycerate 2-kinase [EC:2.7.1.165]" }, { "name":"DDW44_20685 kgd; multifunctional oxoglutarate decarboxylase\/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit\/dihydrolipoyllysine-residue succinyltransferase subunit\tK01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]" }, { "name":"DDW44_00500 NAD-dependent formate dehydrogenase\tK00122 FDH; formate dehydrogenase [EC:1.17.1.9]" }, { "name":"DDW44_02470 formate dehydrogenase\tK00127 fdoI; formate dehydrogenase subunit gamma" }, { "name":"DDW44_13335 purU; formyltetrahydrofolate deformylase\tK01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]" }, { "name":"DDW44_00525 acetamidase\/formamidase family protein\tK01455 fmdA; formamidase [EC:3.5.1.49]" } ] }, { "name":"00640 Propanoate metabolism [PATH:stir00640]", "children":[ { "name":"DDW44_16365 acs; acetate--CoA ligase\tK01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]" }, { "name":"DDW44_13220 pimeloyl-CoA synthetase\tK24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]" }, { "name":"DDW44_21280 acetate kinase\tK00925 ackA; acetate kinase [EC:2.7.2.1]" }, { "name":"DDW44_21285 phosphate acetyltransferase\tK13788 pta; phosphate acetyltransferase [EC:2.3.1.8]" }, { "name":"DDW44_15425 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha\tK00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]" }, { "name":"DDW44_15505 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha\tK00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]" }, { "name":"DDW44_15430 alpha-ketoacid dehydrogenase subunit beta\tK00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]" }, { "name":"DDW44_15510 alpha-ketoacid dehydrogenase subunit beta\tK00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]" }, { "name":"DDW44_15435 branched-chain alpha-keto acid dehydrogenase subunit E2\tK09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]" }, { "name":"DDW44_15515 branched-chain alpha-keto acid dehydrogenase subunit E2\tK09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]" }, { "name":"DDW44_04205 lpdA; dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" }, { "name":"DDW44_21415 enoyl-CoA hydratase\tK01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]" }, { "name":"DDW44_27080 3-hydroxyacyl-CoA dehydrogenase\tK01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase \/ enoyl-CoA hydratase \/ 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]" }, { "name":"DDW44_19035 acetyl-\/propionyl-CoA carboxylase subunit alpha\tK11263 bccA; acetyl-CoA\/propionyl-CoA\/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]" }, { "name":"DDW44_26205 aspartate aminotransferase family protein\tK00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]" }, { "name":"DDW44_22435 gabT; 4-aminobutyrate--2-oxoglutarate transaminase\tK07250 gabT; 4-aminobutyrate aminotransferase \/ (S)-3-amino-2-methylpropionate transaminase \/ 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]" }, { "name":"DDW44_19055 acyl-CoA carboxylase subunit beta\tK27094 accD5; propionyl-CoA\/long-chain acyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.3 6.4.1.- 2.1.3.15]" }, { "name":"DDW44_19050 acyl-CoA carboxylase subunit epsilon\tK27095 accE5; acyl-CoA carboxylase epsilon subunit" }, { "name":"DDW44_21170 mce; methylmalonyl-CoA epimerase\tK05606 MCEE; methylmalonyl-CoA\/ethylmalonyl-CoA epimerase [EC:5.1.99.1]" }, { "name":"DDW44_28950 mutA; methylmalonyl-CoA mutase small subunit\tK01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]" }, { "name":"DDW44_28955 methylmalonyl-CoA mutase\tK01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]" }, { "name":"DDW44_18795 methylmalonyl-CoA mutase\tK01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2]" }, { "name":"DDW44_18505 ADP-forming succinate--CoA ligase subunit beta\tK01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]" }, { "name":"DDW44_18510 succinate--CoA ligase subunit alpha\tK01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]" }, { "name":"DDW44_08755 mmsA; methylmalonate-semialdehyde dehydrogenase (CoA acylating)\tK00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) \/ methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]" }, { "name":"DDW44_24230 acnA; aconitate hydratase AcnA\tK27802 acnA; aconitate hydratase A \/ 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]" }, { "name":"DDW44_25490 isocitrate lyase\tK01637 ICL; isocitrate\/methylisocitrate lyase [EC:4.1.3.1 4.1.3.30]" } ] }, { "name":"00650 Butanoate metabolism [PATH:stir00650]", "children":[ { "name":"DDW44_11800 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_12820 acetyl-CoA C-acyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_21175 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_27075 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_29685 thiolase domain-containing protein\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_00290 3-hydroxybutyryl-CoA dehydrogenase\tK00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]" }, { "name":"DDW44_02020 3-hydroxybutyryl-CoA dehydrogenase\tK00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]" }, { "name":"DDW44_12830 3-hydroxyacyl-CoA dehydrogenase\tK00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]" }, { "name":"DDW44_15410 3-hydroxyacyl-CoA dehydrogenase\tK00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]" }, { "name":"DDW44_21105 3-hydroxybutyryl-CoA dehydrogenase\tK00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]" }, { "name":"DDW44_25480 3-hydroxybutyryl-CoA dehydrogenase\tK00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]" }, { "name":"DDW44_26360 3-hydroxybutyryl-CoA dehydrogenase\tK00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]" }, { "name":"DDW44_27080 3-hydroxyacyl-CoA dehydrogenase\tK01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase \/ enoyl-CoA hydratase \/ 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]" }, { "name":"DDW44_21415 enoyl-CoA hydratase\tK01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]" }, { "name":"DDW44_26350 ccrA; crotonyl-CoA carboxylase\/reductase\tK17829 ccrA; crotonyl-CoA reductase [EC:1.3.1.86]" }, { "name":"DDW44_01590 acetaldehyde dehydrogenase (acetylating)\tK04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10]" }, { "name":"DDW44_00020 hypothetical protein\tK23352 gcdD; glutaconyl-CoA\/methylmalonyl-CoA decarboxylase subunit delta" }, { "name":"DDW44_09195 decarboxylase\tK01799 nicE; maleate isomerase [EC:5.2.1.1]" }, { "name":"DDW44_18730 succinate dehydrogenase flavoprotein subunit\tK00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]" }, { "name":"DDW44_19820 fumarate reductase\/succinate dehydrogenase flavoprotein subunit\tK00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]" }, { "name":"DDW44_28425 fumarate reductase\/succinate dehydrogenase flavoprotein subunit\tK00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]" }, { "name":"DDW44_18725 succinate dehydrogenase iron-sulfur subunit\tK00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]" }, { "name":"DDW44_19815 succinate dehydrogenase\/fumarate reductase iron-sulfur subunit\tK00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]" }, { "name":"DDW44_28430 succinate dehydrogenase\/fumarate reductase iron-sulfur subunit\tK00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]" }, { "name":"DDW44_18740 sdhC; succinate dehydrogenase, cytochrome b556 subunit\tK00241 sdhC; succinate dehydrogenase cytochrome b subunit" }, { "name":"DDW44_28420 succinate dehydrogenase\tK00241 sdhC; succinate dehydrogenase cytochrome b subunit" }, { "name":"DDW44_18735 succinate dehydrogenase\tK00242 sdhD; succinate dehydrogenase membrane anchor subunit" }, { "name":"DDW44_16720 glutamate decarboxylase\tK01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]" }, { "name":"DDW44_26205 aspartate aminotransferase family protein\tK00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]" }, { "name":"DDW44_22435 gabT; 4-aminobutyrate--2-oxoglutarate transaminase\tK07250 gabT; 4-aminobutyrate aminotransferase \/ (S)-3-amino-2-methylpropionate transaminase \/ 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]" }, { "name":"DDW44_15860 NADP-dependent succinic semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"DDW44_18360 gabD2; succinic semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"DDW44_17575 2-oxoglutarate ferredoxin oxidoreductase subunit alpha\tK00174 korA; 2-oxoglutarate\/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]" }, { "name":"DDW44_23695 2-oxoglutarate ferredoxin oxidoreductase subunit alpha\tK00174 korA; 2-oxoglutarate\/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]" }, { "name":"DDW44_17570 2-oxoacid:ferredoxin oxidoreductase subunit beta\tK00175 korB; 2-oxoglutarate\/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]" }, { "name":"DDW44_23690 2-oxoacid:ferredoxin oxidoreductase subunit beta\tK00175 korB; 2-oxoglutarate\/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]" }, { "name":"DDW44_08975 hydroxymethylglutaryl-CoA lyase\tK01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]" }, { "name":"DDW44_10965 acetoacetate--CoA ligase\tK01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]" }, { "name":"DDW44_30055 3-hydroxybutyrate dehydrogenase\tK00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30]" }, { "name":"DDW44_30110 NAD(P)-dependent alcohol dehydrogenase\tK18382 adh1; NAD+-dependent secondary alcohol dehydrogenase Adh1 [EC:1.1.1.-]" }, { "name":"DDW44_08855 acetolactate synthase\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"DDW44_21630 acetolactate synthase large subunit\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"DDW44_31140 hypothetical protein\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"DDW44_21635 acetolactate synthase small subunit\tK01653 E2.2.1.6S; acetolactate synthase I\/III small subunit [EC:2.2.1.6]" } ] }, { "name":"00660 C5-Branched dibasic acid metabolism [PATH:stir00660]", "children":[ { "name":"DDW44_08855 acetolactate synthase\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"DDW44_21630 acetolactate synthase large subunit\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"DDW44_31140 hypothetical protein\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"DDW44_21635 acetolactate synthase small subunit\tK01653 E2.2.1.6S; acetolactate synthase I\/III small subunit [EC:2.2.1.6]" }, { "name":"DDW44_02625 CoA transferase\tK18289 ict-P; itaconate CoA-transferase [EC:2.8.3.- 2.8.3.22]" }, { "name":"DDW44_18505 ADP-forming succinate--CoA ligase subunit beta\tK01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]" }, { "name":"DDW44_18510 succinate--CoA ligase subunit alpha\tK01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]" }, { "name":"DDW44_01555 dehydratase\tK18290 ich-Y; itaconyl-CoA hydratase [EC:4.2.1.56]" }, { "name":"DDW44_01570 CoA ester lyase\tK18292 E4.1.3.25; (S)-citramalyl-CoA lyase [EC:4.1.3.25]" }, { "name":"DDW44_27530 hypothetical protein\tK19268 glmE; methylaspartate mutase epsilon subunit [EC:5.4.99.1]" }, { "name":"DDW44_27525 methylaspartate mutase\tK01846 glmS; methylaspartate mutase sigma subunit [EC:5.4.99.1]" }, { "name":"DDW44_22000 leuC; 3-isopropylmalate dehydratase large subunit\tK01703 leuC; 3-isopropylmalate\/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]" }, { "name":"DDW44_22005 leuD; 3-isopropylmalate dehydratase small subunit\tK01704 leuD; 3-isopropylmalate\/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]" }, { "name":"DDW44_21830 3-isopropylmalate dehydrogenase\tK00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]" } ] }, { "name":"00562 Inositol phosphate metabolism [PATH:stir00562]", "children":[ { "name":"DDW44_17815 inositol monophosphatase\tK01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]" }, { "name":"DDW44_23585 inositol monophosphatase\tK01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]" }, { "name":"DDW44_05145 hydrolase\tK01083 E3.1.3.8; 3-phytase [EC:3.1.3.8]" }, { "name":"DDW44_14980 inositol-3-phosphate synthase\tK01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]" }, { "name":"DDW44_11620 CDP-alcohol phosphatidyltransferase family protein\tK27681 pgsA; phosphatidylinositol phosphate synthase [EC:2.7.8.-]" }, { "name":"DDW44_21595 phospholipase C, phosphocholine-specific\tK01114 plc; phospholipase C [EC:3.1.4.3]" }, { "name":"DDW44_06575 phospholipase\tK01771 plc; 1-phosphatidylinositol phosphodiesterase [EC:4.6.1.13]" }, { "name":"DDW44_26005 dehydrogenase\tK00010 iolG; myo-inositol 2-dehydrogenase \/ D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]" }, { "name":"DDW44_08780 2-keto-myo-inositol dehydratase\tK03335 iolE; inosose dehydratase [EC:4.2.1.44]" }, { "name":"DDW44_08760 iolD; 3D-(3,5\/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)\tK03336 iolD; 3D-(3,5\/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22]" }, { "name":"DDW44_08765 iolB; 5-deoxy-glucuronate isomerase\tK03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30]" }, { "name":"DDW44_08775 iolC; 5-dehydro-2-deoxygluconokinase\tK03338 iolC; 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92]" }, { "name":"DDW44_08755 mmsA; methylmalonate-semialdehyde dehydrogenase (CoA acylating)\tK00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) \/ methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]" }, { "name":"DDW44_02935 triose-phosphate isomerase\tK01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]" } ] }, { "name":"00566 Sulfoquinovose metabolism", "children":[ { "name":"DDW44_18565 malate dehydrogenase\tK00024 mdh; malate dehydrogenase [EC:1.1.1.37]" } ] } ] }, { "name":"09102 Energy metabolism", "children":[ { "name":"00190 Oxidative phosphorylation [PATH:stir00190]", "children":[ { "name":"DDW44_17450 NADH-quinone oxidoreductase subunit A\tK00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]" }, { "name":"DDW44_17585 NADH-quinone oxidoreductase subunit A\tK00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]" }, { "name":"DDW44_27405 NADH-quinone oxidoreductase subunit I\tK00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]" }, { "name":"DDW44_17455 NADH-quinone oxidoreductase subunit B 1\tK00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]" }, { "name":"DDW44_17590 NADH-quinone oxidoreductase subunit B\tK00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]" }, { "name":"DDW44_17460 NADH-quinone oxidoreductase subunit C\tK00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]" }, { "name":"DDW44_16845 NADH-quinone oxidoreductase subunit D\tK00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]" }, { "name":"DDW44_17465 NADH-quinone oxidoreductase subunit D\tK00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]" }, { "name":"DDW44_17470 NADH-quinone oxidoreductase subunit NuoE\tK00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]" }, { "name":"DDW44_17475 NADH oxidoreductase (quinone) subunit F\tK00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]" }, { "name":"DDW44_17480 NADH-quinone oxidoreductase subunit G\tK00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]" }, { "name":"DDW44_17485 NADH-quinone oxidoreductase subunit NuoH\tK00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]" }, { "name":"DDW44_17600 NADH-quinone oxidoreductase subunit H\tK00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]" }, { "name":"DDW44_27395 NADH-quinone oxidoreductase subunit H\tK00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]" }, { "name":"DDW44_17490 NADH-quinone oxidoreductase subunit NuoI\tK00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]" }, { "name":"DDW44_17605 NADH-quinone oxidoreductase subunit I\tK00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]" }, { "name":"DDW44_17495 NADH-quinone oxidoreductase subunit J\tK00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]" }, { "name":"DDW44_17610 proton-conducting membrane transporter\tK00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]" }, { "name":"DDW44_27390 NADH:ubiquinone oxidoreductase subunit J\tK00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]" }, { "name":"DDW44_17500 NADH-quinone oxidoreductase subunit K 1\tK00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]" }, { "name":"DDW44_17615 NADH-quinone oxidoreductase subunit NuoK\tK00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]" }, { "name":"DDW44_17505 NADH-quinone oxidoreductase subunit L\tK00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]" }, { "name":"DDW44_17620 NADH-quinone oxidoreductase subunit L\tK00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]" }, { "name":"DDW44_27380 hypothetical protein\tK00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]" }, { "name":"DDW44_17510 NADH-quinone oxidoreductase subunit M\tK00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]" }, { "name":"DDW44_17625 NADH-quinone oxidoreductase subunit M\tK00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]" }, { "name":"DDW44_27375 oxidoreductase\tK00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]" }, { "name":"DDW44_17515 NADH-quinone oxidoreductase subunit NuoN\tK00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]" }, { "name":"DDW44_17630 NADH-quinone oxidoreductase subunit N\tK00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]" }, { "name":"DDW44_27370 NADH-quinone oxidoreductase subunit N\tK00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]" }, { "name":"DDW44_27385 NADH-quinone oxidoreductase subunit NuoK\tK05576 ndhE; NAD(P)H-quinone oxidoreductase subunit 4L [EC:7.1.1.2]" }, { "name":"DDW44_06735 FAD-dependent oxidoreductase\tK03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]" }, { "name":"DDW44_11850 NAD(P)\/FAD-dependent oxidoreductase\tK03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]" }, { "name":"DDW44_17050 pyridine nucleotide-disulfide oxidoreductase\tK03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]" }, { "name":"DDW44_29370 FAD-dependent oxidoreductase\tK03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]" }, { "name":"DDW44_18730 succinate dehydrogenase flavoprotein subunit\tK00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]" }, { "name":"DDW44_19820 fumarate reductase\/succinate dehydrogenase flavoprotein subunit\tK00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]" }, { "name":"DDW44_28425 fumarate reductase\/succinate dehydrogenase flavoprotein subunit\tK00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]" }, { "name":"DDW44_18725 succinate dehydrogenase iron-sulfur subunit\tK00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]" }, { "name":"DDW44_19815 succinate dehydrogenase\/fumarate reductase iron-sulfur subunit\tK00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]" }, { "name":"DDW44_28430 succinate dehydrogenase\/fumarate reductase iron-sulfur subunit\tK00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]" }, { "name":"DDW44_18740 sdhC; succinate dehydrogenase, cytochrome b556 subunit\tK00241 sdhC; succinate dehydrogenase cytochrome b subunit" }, { "name":"DDW44_28420 succinate dehydrogenase\tK00241 sdhC; succinate dehydrogenase cytochrome b subunit" }, { "name":"DDW44_18735 succinate dehydrogenase\tK00242 sdhD; succinate dehydrogenase membrane anchor subunit" }, { "name":"DDW44_04045 Rieske (2Fe-2S) protein\tK03890 qcrA; quinol---cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]" }, { "name":"DDW44_04040 ubiquinol-cytochrome c reductase cytochrome b subunit\tK03891 qcrB; quinol---cytochrome-c reductase cytochrome b subunit [EC:7.1.1.8]" }, { "name":"DDW44_04050 cystathionine beta-lyase\tK03889 qcrC; quinol---cytochrome-c reductase cytochrome c subunit [EC:7.1.1.8]" }, { "name":"DDW44_02870 protoheme IX farnesyltransferase\tK02257 COX10; heme o synthase [EC:2.5.1.141]" }, { "name":"DDW44_04070 cytochrome c oxidase subunit 4\tK27109 ctaF; cytochrome c oxidase subunit IV [EC:7.1.1.9]" }, { "name":"DDW44_04055 heme-copper oxidase subunit III\tK02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]" }, { "name":"DDW44_04075 ctaD; cytochrome c oxidase subunit I\tK02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]" }, { "name":"DDW44_28585 ctaD; cytochrome c oxidase subunit I\tK02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]" }, { "name":"DDW44_04080 coxB; cytochrome c oxidase subunit II\tK02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]" }, { "name":"DDW44_02855 cytochrome B\tK02259 COX15; heme a synthase [EC:1.17.99.9]" }, { "name":"DDW44_14810 cytochrome ubiquinol oxidase subunit I\tK00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]" }, { "name":"DDW44_26080 cytochrome ubiquinol oxidase subunit I\tK00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]" }, { "name":"DDW44_14805 cydB; cytochrome d ubiquinol oxidase subunit II\tK00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]" }, { "name":"DDW44_26085 cytochrome BD oxidase subunit II\tK00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]" }, { "name":"DDW44_21050 F0F1 ATP synthase subunit alpha\tK02111 ATPF1A; F-type H+\/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]" }, { "name":"DDW44_21060 atpD; F0F1 ATP synthase subunit beta\tK02112 ATPF1B; F-type H+\/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]" }, { "name":"DDW44_21055 F0F1 ATP synthase subunit gamma\tK02115 ATPF1G; F-type H+-transporting ATPase subunit gamma" }, { "name":"DDW44_21045 F0F1 ATP synthase subunit delta\tK02113 ATPF1D; F-type H+-transporting ATPase subunit delta" }, { "name":"DDW44_21065 F0F1 ATP synthase subunit epsilon\tK02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon" }, { "name":"DDW44_21030 atpB; ATP synthase F0 subunit A\tK02108 ATPF0A; F-type H+-transporting ATPase subunit a" }, { "name":"DDW44_21040 F0F1 ATP synthase subunit B\tK02109 ATPF0B; F-type H+-transporting ATPase subunit b" }, { "name":"DDW44_21035 atpE; ATP synthase F0 subunit C\tK02110 ATPF0C; F-type H+-transporting ATPase subunit c" }, { "name":"DDW44_16745 inorganic diphosphatase\tK01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]" }, { "name":"DDW44_06595 RNA degradosome polyphosphate kinase\tK00937 ppk1; polyphosphate kinase [EC:2.7.4.1]" }, { "name":"DDW44_29155 ppk2; polyphosphate kinase 2\tK22468 ppk2; polyphosphate kinase [EC:2.7.4.34]" } ] }, { "name":"00195 Photosynthesis" }, { "name":"00196 Photosynthesis - antenna proteins" }, { "name":"00710 Carbon fixation by Calvin cycle [PATH:stir00710]", "children":[ { "name":"DDW44_02940 pgk; phosphoglycerate kinase\tK00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]" }, { "name":"DDW44_02945 gap; type I glyceraldehyde-3-phosphate dehydrogenase\tK00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]" }, { "name":"DDW44_29170 glyceraldehyde-3-phosphate dehydrogenase\tK00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]" }, { "name":"DDW44_00785 ketose-bisphosphate aldolase\tK01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]" }, { "name":"DDW44_05435 class II fructose-bisphosphate aldolase\tK01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]" }, { "name":"DDW44_19635 glpX; class II fructose-bisphosphatase\tK02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]" }, { "name":"DDW44_02875 transketolase\tK00615 E2.2.1.1; transketolase [EC:2.2.1.1]" }, { "name":"DDW44_24665 tkt; transketolase\tK00615 E2.2.1.1; transketolase [EC:2.2.1.1]" }, { "name":"DDW44_27470 transketolase\tK00615 E2.2.1.1; transketolase [EC:2.2.1.1]" }, { "name":"DDW44_29365 transketolase\tK00615 E2.2.1.1; transketolase [EC:2.2.1.1]" }, { "name":"DDW44_08445 ribose-5-phosphate isomerase\tK01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]" }, { "name":"DDW44_02935 triose-phosphate isomerase\tK01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]" }, { "name":"DDW44_11335 rpe; ribulose-phosphate 3-epimerase\tK01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]" }, { "name":"DDW44_02880 tal; transaldolase\tK00616 TALDO1; transaldolase [EC:2.2.1.2]" }, { "name":"DDW44_12080 phosphoenolpyruvate carboxylase\tK01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]" }, { "name":"DDW44_00670 pyruvate, phosphate dikinase\tK01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]" }, { "name":"DDW44_07865 pyruvate, phosphate dikinase\tK01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]" }, { "name":"DDW44_18565 malate dehydrogenase\tK00024 mdh; malate dehydrogenase [EC:1.1.1.37]" } ] }, { "name":"00720 Other carbon fixation pathways [PATH:stir00720]", "children":[ { "name":"DDW44_00670 pyruvate, phosphate dikinase\tK01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]" }, { "name":"DDW44_07865 pyruvate, phosphate dikinase\tK01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]" }, { "name":"DDW44_12080 phosphoenolpyruvate carboxylase\tK01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]" }, { "name":"DDW44_00555 pyruvate carboxylase\tK01958 PC; pyruvate carboxylase [EC:6.4.1.1]" }, { "name":"DDW44_18565 malate dehydrogenase\tK00024 mdh; malate dehydrogenase [EC:1.1.1.37]" }, { "name":"DDW44_19620 fumarate hydratase\tK01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]" }, { "name":"DDW44_19615 aspA; aspartate ammonia-lyase\tK01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]" }, { "name":"DDW44_18730 succinate dehydrogenase flavoprotein subunit\tK00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]" }, { "name":"DDW44_19820 fumarate reductase\/succinate dehydrogenase flavoprotein subunit\tK00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]" }, { "name":"DDW44_28425 fumarate reductase\/succinate dehydrogenase flavoprotein subunit\tK00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]" }, { "name":"DDW44_18725 succinate dehydrogenase iron-sulfur subunit\tK00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]" }, { "name":"DDW44_19815 succinate dehydrogenase\/fumarate reductase iron-sulfur subunit\tK00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]" }, { "name":"DDW44_28430 succinate dehydrogenase\/fumarate reductase iron-sulfur subunit\tK00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]" }, { "name":"DDW44_18740 sdhC; succinate dehydrogenase, cytochrome b556 subunit\tK00241 sdhC; succinate dehydrogenase cytochrome b subunit" }, { "name":"DDW44_28420 succinate dehydrogenase\tK00241 sdhC; succinate dehydrogenase cytochrome b subunit" }, { "name":"DDW44_18735 succinate dehydrogenase\tK00242 sdhD; succinate dehydrogenase membrane anchor subunit" }, { "name":"DDW44_18510 succinate--CoA ligase subunit alpha\tK01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]" }, { "name":"DDW44_18505 ADP-forming succinate--CoA ligase subunit beta\tK01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]" }, { "name":"DDW44_11800 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_12820 acetyl-CoA C-acyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_21175 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_27075 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_29685 thiolase domain-containing protein\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_17575 2-oxoglutarate ferredoxin oxidoreductase subunit alpha\tK00174 korA; 2-oxoglutarate\/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]" }, { "name":"DDW44_23695 2-oxoglutarate ferredoxin oxidoreductase subunit alpha\tK00174 korA; 2-oxoglutarate\/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]" }, { "name":"DDW44_17570 2-oxoacid:ferredoxin oxidoreductase subunit beta\tK00175 korB; 2-oxoglutarate\/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]" }, { "name":"DDW44_23690 2-oxoacid:ferredoxin oxidoreductase subunit beta\tK00175 korB; 2-oxoglutarate\/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]" }, { "name":"DDW44_01375 NADP-dependent isocitrate dehydrogenase\tK00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]" }, { "name":"DDW44_24230 acnA; aconitate hydratase AcnA\tK27802 acnA; aconitate hydratase A \/ 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]" }, { "name":"DDW44_21170 mce; methylmalonyl-CoA epimerase\tK05606 MCEE; methylmalonyl-CoA\/ethylmalonyl-CoA epimerase [EC:5.1.99.1]" }, { "name":"DDW44_28950 mutA; methylmalonyl-CoA mutase small subunit\tK01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]" }, { "name":"DDW44_28955 methylmalonyl-CoA mutase\tK01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]" }, { "name":"DDW44_18795 methylmalonyl-CoA mutase\tK01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2]" }, { "name":"DDW44_18545 bifunctional methylenetetrahydrofolate dehydrogenase\/methenyltetrahydrofolate cyclohydrolase\tK01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) \/ methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]" }, { "name":"DDW44_03820 metF; methylenetetrahydrofolate reductase [NAD(P)H]\tK00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]" }, { "name":"DDW44_21285 phosphate acetyltransferase\tK13788 pta; phosphate acetyltransferase [EC:2.3.1.8]" }, { "name":"DDW44_21280 acetate kinase\tK00925 ackA; acetate kinase [EC:2.7.2.1]" }, { "name":"DDW44_16365 acs; acetate--CoA ligase\tK01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]" } ] }, { "name":"00680 Methane metabolism [PATH:stir00680]", "children":[ { "name":"DDW44_14640 aldehyde dehydrogenase\tK00148 fdhA; glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46]" }, { "name":"DDW44_02585 alcohol dehydrogenase\tK00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase \/ alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]" }, { "name":"DDW44_04725 Zn-dependent alcohol dehydrogenase\tK00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase \/ alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]" }, { "name":"DDW44_00500 NAD-dependent formate dehydrogenase\tK00122 FDH; formate dehydrogenase [EC:1.17.1.9]" }, { "name":"DDW44_02470 formate dehydrogenase\tK00127 fdoI; formate dehydrogenase subunit gamma" }, { "name":"DDW44_18625 glyA; serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"DDW44_21010 serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"DDW44_21445 serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"DDW44_11870 phosphopyruvate hydratase\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" }, { "name":"DDW44_12080 phosphoenolpyruvate carboxylase\tK01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]" }, { "name":"DDW44_18565 malate dehydrogenase\tK00024 mdh; malate dehydrogenase [EC:1.1.1.37]" }, { "name":"DDW44_00785 ketose-bisphosphate aldolase\tK01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]" }, { "name":"DDW44_05435 class II fructose-bisphosphate aldolase\tK01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]" }, { "name":"DDW44_19635 glpX; class II fructose-bisphosphatase\tK02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]" }, { "name":"DDW44_01695 ATP-dependent 6-phosphofructokinase\tK21071 pfk; ATP-dependent phosphofructokinase \/ diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]" }, { "name":"DDW44_03915 6-phosphofructokinase\tK21071 pfk; ATP-dependent phosphofructokinase \/ diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]" }, { "name":"DDW44_21290 6-phosphofructokinase\tK21071 pfk; ATP-dependent phosphofructokinase \/ diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]" }, { "name":"DDW44_21280 acetate kinase\tK00925 ackA; acetate kinase [EC:2.7.2.1]" }, { "name":"DDW44_21285 phosphate acetyltransferase\tK13788 pta; phosphate acetyltransferase [EC:2.3.1.8]" }, { "name":"DDW44_16365 acs; acetate--CoA ligase\tK01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]" }, { "name":"DDW44_06385 phosphoglyceromutase\tK01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]" }, { "name":"DDW44_21645 phosphoglycerate dehydrogenase\tK00058 serA; D-3-phosphoglycerate dehydrogenase \/ 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]" }, { "name":"DDW44_13505 serC; phosphoserine transaminase\tK00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]" }, { "name":"DDW44_07470 serB; phosphoserine phosphatase SerB\tK01079 serB; phosphoserine phosphatase [EC:3.1.3.3]" }, { "name":"DDW44_12900 fbiC; 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase\tK11779 fbiC; FO synthase [EC:2.5.1.147 4.3.1.32]" }, { "name":"DDW44_22025 cofC; 2-phospho-L-lactate guanylyltransferase\tK14941 cofC; 2-phospho-L-lactate\/phosphoenolpyruvate guanylyltransferase [EC:2.7.7.68 2.7.7.105]" }, { "name":"DDW44_10215 2-phospho-L-lactate transferase\tK11212 cofD; LPPG:FO 2-phospho-L-lactate transferase [EC:2.7.8.28]" }, { "name":"DDW44_10220 coenzyme F420-0:L-glutamate ligase\tK24998 fbiB; dehydro coenzyme F420 reductase \/ coenzyme F420-0:L-glutamate ligase \/ coenzyme F420-1:gamma-L-glutamate ligase [EC:1.3.8.17 6.3.2.31 6.3.2.34]" }, { "name":"DDW44_21740 mfnA; tyrosine decarboxylase MfnA\tK18933 mfnA; tyrosine decarboxylase \/ aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11]" } ] }, { "name":"00910 Nitrogen metabolism [PATH:stir00910]", "children":[ { "name":"DDW44_00525 acetamidase\/formamidase family protein\tK01455 fmdA; formamidase [EC:3.5.1.49]" }, { "name":"DDW44_09800 MFS transporter\tK02575 NRT2; MFS transporter, NNP family, nitrate\/nitrite transporter" }, { "name":"DDW44_07780 nitrite reductase\tK00372 nasC; assimilatory nitrate reductase catalytic subunit [EC:1.7.99.-]" }, { "name":"DDW44_07825 FAD-dependent oxidoreductase\tK00360 nasB; assimilatory nitrate reductase electron transfer subunit [EC:1.7.99.-]" }, { "name":"DDW44_07830 nitrite reductase large subunit\tK00362 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15]" }, { "name":"DDW44_07835 nirD; nitrite reductase (NAD(P)H) small subunit\tK00363 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15]" }, { "name":"DDW44_06230 2-nitropropane dioxygenase\tK00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]" }, { "name":"DDW44_08055 2-nitropropane dioxygenase\tK00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]" }, { "name":"DDW44_10025 NAD-glutamate dehydrogenase\tK15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]" }, { "name":"DDW44_16545 glutamate dehydrogenase\tK00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]" }, { "name":"DDW44_27355 glutamate dehydrogenase\tK00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]" }, { "name":"DDW44_05655 NADP-specific glutamate dehydrogenase\tK00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]" }, { "name":"DDW44_02115 glutamine synthetase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"DDW44_04295 glnA; type I glutamate--ammonia ligase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"DDW44_04360 glutamine synthetase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"DDW44_04460 glutamine synthetase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"DDW44_03385 glutamate synthase large subunit\tK00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]" }, { "name":"DDW44_03380 gltD; glutamate synthase subunit beta\tK00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]" }, { "name":"DDW44_29745 gltD; glutamate synthase\tK00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]" }, { "name":"DDW44_03720 carbonic anhydrase\tK01673 cynT; carbonic anhydrase [EC:4.2.1.1]" }, { "name":"DDW44_16370 transporter\tK01673 cynT; carbonic anhydrase [EC:4.2.1.1]" }, { "name":"DDW44_19090 carbonic anhydrase\tK01673 cynT; carbonic anhydrase [EC:4.2.1.1]" }, { "name":"DDW44_25090 carbonic anhydrase\tK01673 cynT; carbonic anhydrase [EC:4.2.1.1]" } ] }, { "name":"00920 Sulfur metabolism [PATH:stir00920]", "children":[ { "name":"DDW44_23715 ABC transporter substrate-binding protein\tK15553 ssuA; sulfonate transport system substrate-binding protein" }, { "name":"DDW44_24755 sulfate ABC transporter substrate-binding protein\tK15553 ssuA; sulfonate transport system substrate-binding protein" }, { "name":"DDW44_23710 ABC transporter permease\tK15554 ssuC; sulfonate transport system permease protein" }, { "name":"DDW44_24745 ABC transporter permease\tK15554 ssuC; sulfonate transport system permease protein" }, { "name":"DDW44_23705 ABC transporter ATP-binding protein\tK15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]" }, { "name":"DDW44_24750 ABC transporter ATP-binding protein\tK15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]" }, { "name":"DDW44_24760 sulfate adenylyltransferase\tK00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]" }, { "name":"DDW44_24765 sulfate adenylyltransferase subunit CysD\tK00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]" }, { "name":"DDW44_24770 cysC; adenylyl-sulfate kinase\tK00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]" }, { "name":"DDW44_24775 phosphoadenylyl-sulfate reductase\tK00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]" }, { "name":"DDW44_24785 sulfite reductase\tK00392 sir; sulfite reductase (ferredoxin) [EC:1.8.7.1]" }, { "name":"DDW44_06520 sulfurtransferase\tK01011 TST; thiosulfate\/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]" }, { "name":"DDW44_23555 sulfurtransferase\tK01011 TST; thiosulfate\/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]" }, { "name":"DDW44_31170 serine acetyltransferase\tK00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]" }, { "name":"DDW44_31100 cysteine synthase A\tK01738 cysK; cysteine synthase [EC:2.5.1.47]" }, { "name":"DDW44_31175 cysteine synthase family protein\tK01738 cysK; cysteine synthase [EC:2.5.1.47]" }, { "name":"DDW44_19160 cystathionine gamma-synthase\tK01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]" } ] } ] }, { "name":"09103 Lipid metabolism", "children":[ { "name":"00061 Fatty acid biosynthesis [PATH:stir00061]", "children":[ { "name":"DDW44_19035 acetyl-\/propionyl-CoA carboxylase subunit alpha\tK11263 bccA; acetyl-CoA\/propionyl-CoA\/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]" }, { "name":"DDW44_06090 acyl carrier protein\tK02078 acpP; acyl carrier protein" }, { "name":"DDW44_29580 acyl carrier protein\tK02078 acpP; acyl carrier protein" }, { "name":"DDW44_06080 ACP S-malonyltransferase\tK00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]" }, { "name":"DDW44_00190 hypothetical protein\tK00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]" }, { "name":"DDW44_06085 ketoacyl-ACP synthase III\tK00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]" }, { "name":"DDW44_26565 ketoacyl-ACP synthase III\tK00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]" }, { "name":"DDW44_27770 3-oxoacyl-ACP synthase\tK00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]" }, { "name":"DDW44_06095 fabF; beta-ketoacyl-[acyl-carrier-protein] synthase II\tK09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]" }, { "name":"DDW44_07505 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"DDW44_07630 KR domain-containing protein\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"DDW44_10785 3-oxoacyl-ACP reductase FabG\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"DDW44_27015 acyl-ACP desaturase\tK03921 FAB2; acyl-[acyl-carrier protein] desaturase [EC:1.14.19.2 1.14.19.11 1.14.19.26]" }, { "name":"DDW44_02530 acyl-CoA synthetase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"DDW44_03975 long-chain fatty acid--CoA ligase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"DDW44_06280 long-chain fatty acid--CoA ligase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"DDW44_08095 long-chain fatty acid--CoA ligase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"DDW44_15655 acyl-CoA synthetase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"DDW44_26555 long-chain fatty acid--CoA ligase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" } ] }, { "name":"00062 Fatty acid elongation" }, { "name":"00071 Fatty acid degradation [PATH:stir00071]", "children":[ { "name":"DDW44_11800 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_12820 acetyl-CoA C-acyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_21175 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_27075 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_29685 thiolase domain-containing protein\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_03340 acetyl-CoA C-acetyltransferase\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"DDW44_04745 Nonspecific lipid-transfer protein\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"DDW44_05610 steroid 3-ketoacyl-CoA thiolase\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"DDW44_24435 acetyl-CoA C-acyltransferase\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"DDW44_27080 3-hydroxyacyl-CoA dehydrogenase\tK01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase \/ enoyl-CoA hydratase \/ 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]" }, { "name":"DDW44_21415 enoyl-CoA hydratase\tK01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]" }, { "name":"DDW44_00280 acyl-CoA dehydrogenase\tK00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]" }, { "name":"DDW44_00285 acyl-CoA dehydrogenase\tK00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]" }, { "name":"DDW44_02520 acyl-CoA dehydrogenase\tK00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]" }, { "name":"DDW44_29805 acyl-CoA dehydrogenase\tK00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]" }, { "name":"DDW44_08935 acyl-CoA dehydrogenase\tK00255 ACADL; long-chain-acyl-CoA dehydrogenase [EC:1.3.8.8]" }, { "name":"DDW44_15230 acyl-CoA dehydrogenase\tK00255 ACADL; long-chain-acyl-CoA dehydrogenase [EC:1.3.8.8]" }, { "name":"DDW44_27070 acyl-CoA dehydrogenase\tK00255 ACADL; long-chain-acyl-CoA dehydrogenase [EC:1.3.8.8]" }, { "name":"DDW44_07075 acyl-CoA dehydrogenase\tK00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]" }, { "name":"DDW44_02530 acyl-CoA synthetase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"DDW44_03975 long-chain fatty acid--CoA ligase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"DDW44_06280 long-chain fatty acid--CoA ligase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"DDW44_08095 long-chain fatty acid--CoA ligase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"DDW44_15655 acyl-CoA synthetase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"DDW44_26555 long-chain fatty acid--CoA ligase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"DDW44_03845 oxidoreductase\tK00529 hcaD; 3-phenylpropionate\/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]" }, { "name":"DDW44_07755 FAD-dependent oxidoreductase\tK00529 hcaD; 3-phenylpropionate\/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]" }, { "name":"DDW44_02585 alcohol dehydrogenase\tK00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase \/ alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]" }, { "name":"DDW44_04725 Zn-dependent alcohol dehydrogenase\tK00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase \/ alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]" }, { "name":"DDW44_01395 zinc-binding alcohol dehydrogenase family protein\tK13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]" }, { "name":"DDW44_02590 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_04850 aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_12765 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_16710 aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_18985 betaine-aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_31145 hypothetical protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" } ] }, { "name":"00073 Cutin, suberine and wax biosynthesis", "children":[ { "name":"DDW44_28305 wax ester\/triacylglycerol synthase family O-acyltransferase\tK00635 tgs; wax synthase \/ diacylglycerol O-acyltransferase [EC:2.3.1.75 2.3.1.20]" } ] }, { "name":"00074 Mycolic acid biosynthesis [PATH:stir00074]", "children":[ { "name":"DDW44_19035 acetyl-\/propionyl-CoA carboxylase subunit alpha\tK11263 bccA; acetyl-CoA\/propionyl-CoA\/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]" }, { "name":"DDW44_18215 holo-ACP synthase\tK00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]" }, { "name":"DDW44_27640 4'-phosphopantetheinyl transferase\tK02362 entD; enterobactin synthetase component D \/ holo-[acyl-carrier protein] synthase [EC:6.3.2.14 2.7.8.7]" }, { "name":"DDW44_06090 acyl carrier protein\tK02078 acpP; acyl carrier protein" }, { "name":"DDW44_29580 acyl carrier protein\tK02078 acpP; acyl carrier protein" }, { "name":"DDW44_06080 ACP S-malonyltransferase\tK00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]" }, { "name":"DDW44_07500 enoyl-[acyl-carrier-protein] reductase FabI\tK11611 inhA; meromycolic acid enoyl-[acyl-carrier protein] reductase [EC:1.3.1.118]" }, { "name":"DDW44_27015 acyl-ACP desaturase\tK03921 FAB2; acyl-[acyl-carrier protein] desaturase [EC:1.14.19.2 1.14.19.11 1.14.19.26]" }, { "name":"DDW44_19055 acyl-CoA carboxylase subunit beta\tK27094 accD5; propionyl-CoA\/long-chain acyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.3 6.4.1.- 2.1.3.15]" }, { "name":"DDW44_19050 acyl-CoA carboxylase subunit epsilon\tK27095 accE5; acyl-CoA carboxylase epsilon subunit" } ] }, { "name":"00100 Steroid biosynthesis" }, { "name":"00120 Primary bile acid biosynthesis" }, { "name":"00121 Secondary bile acid biosynthesis" }, { "name":"00140 Steroid hormone biosynthesis" }, { "name":"00561 Glycerolipid metabolism [PATH:stir00561]", "children":[ { "name":"DDW44_26295 glycerate kinase\tK00865 glxK; glycerate 2-kinase [EC:2.7.1.165]" }, { "name":"DDW44_02590 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_04850 aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_12765 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_16710 aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_18985 betaine-aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_31145 hypothetical protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_19125 NAD(P)-dependent alcohol dehydrogenase\tK13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]" }, { "name":"DDW44_15785 dhaK; dihydroxyacetone kinase subunit DhaK\tK05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121]" }, { "name":"DDW44_15790 dhaL; dihydroxyacetone kinase subunit L\tK05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121]" }, { "name":"DDW44_15795 PTS fructose transporter subunit IIA\tK05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121]" }, { "name":"DDW44_02330 glpK; glycerol kinase\tK00864 glpK; glycerol kinase [EC:2.7.1.30]" }, { "name":"DDW44_11000 glpK; glycerol kinase\tK00864 glpK; glycerol kinase [EC:2.7.1.30]" }, { "name":"DDW44_07340 HAD family hydrolase\tK06117 E3.1.3.21; glycerol-1-phosphatase [EC:3.1.3.21]" }, { "name":"DDW44_01705 1-acyl-sn-glycerol-3-phosphate acyltransferase\tK00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]" }, { "name":"DDW44_01905 1-acyl-sn-glycerol-3-phosphate acyltransferase\tK00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]" }, { "name":"DDW44_03930 1-acyl-sn-glycerol-3-phosphate acyltransferase\tK00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]" }, { "name":"DDW44_07125 1-acyl-sn-glycerol-3-phosphate acyltransferase\tK00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]" }, { "name":"DDW44_28305 wax ester\/triacylglycerol synthase family O-acyltransferase\tK00635 tgs; wax synthase \/ diacylglycerol O-acyltransferase [EC:2.3.1.75 2.3.1.20]" }, { "name":"DDW44_26620 alpha-galactosidase\tK07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]" } ] }, { "name":"00564 Glycerophospholipid metabolism [PATH:stir00564]", "children":[ { "name":"DDW44_22035 glycerol-3-phosphate dehydrogenase\tK00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]" }, { "name":"DDW44_02335 glycerol-3-phosphate dehydrogenase\tK00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]" }, { "name":"DDW44_18340 glycerol-3-phosphate dehydrogenase\/oxidase\tK00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]" }, { "name":"DDW44_25975 glycerol-3-phosphate dehydrogenase\tK00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]" }, { "name":"DDW44_01705 1-acyl-sn-glycerol-3-phosphate acyltransferase\tK00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]" }, { "name":"DDW44_01905 1-acyl-sn-glycerol-3-phosphate acyltransferase\tK00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]" }, { "name":"DDW44_03930 1-acyl-sn-glycerol-3-phosphate acyltransferase\tK00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]" }, { "name":"DDW44_07125 1-acyl-sn-glycerol-3-phosphate acyltransferase\tK00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]" }, { "name":"DDW44_21595 phospholipase C, phosphocholine-specific\tK01114 plc; phospholipase C [EC:3.1.4.3]" }, { "name":"DDW44_01435 glycerophosphodiester phosphodiesterase\tK01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]" }, { "name":"DDW44_01900 glycerophosphodiester phosphodiesterase\tK01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]" }, { "name":"DDW44_11130 glycerophosphodiester phosphodiesterase\tK01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]" }, { "name":"DDW44_14650 glycerophosphodiester phosphodiesterase\tK01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]" }, { "name":"DDW44_22365 glycerophosphodiester phosphodiesterase\tK01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]" }, { "name":"DDW44_22295 phosphatidate cytidylyltransferase\tK00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]" }, { "name":"DDW44_26320 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase\tK17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]" }, { "name":"DDW44_26325 phosphatidylserine decarboxylase family protein\tK01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]" }, { "name":"DDW44_23005 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase\tK00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]" }, { "name":"DDW44_29150 cardiolipin synthase B\tK06131 clsA_B; cardiolipin synthase A\/B [EC:2.7.8.-]" }, { "name":"DDW44_10930 CDP-alcohol phosphatidyltransferase family protein\tK08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41]" }, { "name":"DDW44_27215 dehydrogenase\tK00096 araM; glycerol-1-phosphate dehydrogenase [NAD(P)+] [EC:1.1.1.261]" } ] }, { "name":"00565 Ether lipid metabolism [PATH:stir00565]", "children":[ { "name":"DDW44_25985 FAD-binding oxidoreductase\tK00803 AGPS; alkyldihydroxyacetonephosphate synthase [EC:2.5.1.26]" }, { "name":"DDW44_21595 phospholipase C, phosphocholine-specific\tK01114 plc; phospholipase C [EC:3.1.4.3]" } ] }, { "name":"00600 Sphingolipid metabolism [PATH:stir00600]", "children":[ { "name":"DDW44_26620 alpha-galactosidase\tK07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]" }, { "name":"DDW44_18750 beta-N-acetylglucosaminidase\tK12373 HEXA_B; hexosaminidase [EC:3.2.1.52]" } ] }, { "name":"00590 Arachidonic acid metabolism" }, { "name":"00591 Linoleic acid metabolism" }, { "name":"00592 alpha-Linolenic acid metabolism [PATH:stir00592]", "children":[ { "name":"DDW44_03340 acetyl-CoA C-acetyltransferase\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"DDW44_04745 Nonspecific lipid-transfer protein\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"DDW44_05610 steroid 3-ketoacyl-CoA thiolase\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"DDW44_24435 acetyl-CoA C-acyltransferase\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" } ] }, { "name":"01040 Biosynthesis of unsaturated fatty acids [PATH:stir01040]", "children":[ { "name":"DDW44_12085 acyl-CoA desaturase\tK00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]" }, { "name":"DDW44_27015 acyl-ACP desaturase\tK03921 FAB2; acyl-[acyl-carrier protein] desaturase [EC:1.14.19.2 1.14.19.11 1.14.19.26]" }, { "name":"DDW44_13715 G-D-S-L family lipolytic protein\tK10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]" }, { "name":"DDW44_08940 tesB; acyl-CoA thioesterase II\tK10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.20]" } ] } ] }, { "name":"09104 Nucleotide metabolism", "children":[ { "name":"00230 Purine metabolism [PATH:stir00230]", "children":[ { "name":"DDW44_29105 alpha-D-glucose phosphate-specific phosphoglucomutase\tK01835 pgm; phosphoglucomutase [EC:5.4.2.2]" }, { "name":"DDW44_12060 ribose-phosphate diphosphokinase\tK00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]" }, { "name":"DDW44_14165 amidophosphoribosyltransferase\tK00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]" }, { "name":"DDW44_14260 phosphoribosylamine--glycine ligase\tK01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]" }, { "name":"DDW44_00210 hypothetical protein\tK11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]" }, { "name":"DDW44_18530 phosphoribosylglycinamide formyltransferase\tK11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]" }, { "name":"DDW44_14190 phosphoribosylformylglycinamidine synthase subunit PurL\tK23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3]" }, { "name":"DDW44_14200 phosphoribosylformylglycinamidine synthase subunit PurS\tK23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]" }, { "name":"DDW44_14195 phosphoribosylformylglycinamidine synthase subunit PurQ\tK23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ \/ glutaminase [EC:6.3.5.3 3.5.1.2]" }, { "name":"DDW44_14160 phosphoribosylformylglycinamidine cyclo-ligase\tK01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]" }, { "name":"DDW44_10330 5-(carboxyamino)imidazole ribonucleotide synthase\tK01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]" }, { "name":"DDW44_10325 purE; 5-(carboxyamino)imidazole ribonucleotide mutase\tK01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]" }, { "name":"DDW44_14245 phosphoribosylaminoimidazolesuccinocarboxamide synthase\tK01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]" }, { "name":"DDW44_10535 adenylosuccinate lyase\tK01756 purB; adenylosuccinate lyase [EC:4.3.2.2]" }, { "name":"DDW44_18535 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase\/IMP cyclohydrolase PurH\tK00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase \/ IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]" }, { "name":"DDW44_11555 adenine phosphoribosyltransferase\tK00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]" }, { "name":"DDW44_06580 bifunctional metallophosphatase\/5'-nucleotidase\tK01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]" }, { "name":"DDW44_09365 HAD family hydrolase\tK02566 nagD; 5'-nucleotidase [EC:3.1.3.5]" }, { "name":"DDW44_19010 purine-nucleoside phosphorylase\tK03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]" }, { "name":"DDW44_03660 pgeF; peptidoglycan editing factor PgeF\tK05810 LACC1; purine-nucleoside\/S-methyl-5'-thioadenosine phosphorylase \/ adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]" }, { "name":"DDW44_29330 pyrimidine-specific ribonucleoside hydrolase RihA\tK25589 inuH; inosine\/uridine nucleosidase [EC:3.2.2.2 3.2.2.3]" }, { "name":"DDW44_16770 hpt; hypoxanthine phosphoribosyltransferase\tK00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]" }, { "name":"DDW44_18325 IMP dehydrogenase\tK00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]" }, { "name":"DDW44_18330 GuaB3 family IMP dehydrogenase-related protein\tK00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]" }, { "name":"DDW44_08360 nucleoside-diphosphate kinase\tK00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]" }, { "name":"DDW44_09510 rdgB; non-canonical purine NTP pyrophosphatase, RdgB\/HAM1 family\tK01519 rdgB; XTP\/dITP diphosphohydrolase [EC:3.6.1.66]" }, { "name":"DDW44_24045 xanthine dehydrogenase\tK11177 yagR; xanthine dehydrogenase YagR molybdenum-binding subunit [EC:1.17.1.4]" }, { "name":"DDW44_26720 xanthine dehydrogenase\tK11177 yagR; xanthine dehydrogenase YagR molybdenum-binding subunit [EC:1.17.1.4]" }, { "name":"DDW44_24040 molybdopterin dehydrogenase\tK11178 yagS; xanthine dehydrogenase YagS FAD-binding subunit [EC:1.17.1.4]" }, { "name":"DDW44_26725 xanthine dehydrogenase\tK11178 yagS; xanthine dehydrogenase YagS FAD-binding subunit [EC:1.17.1.4]" }, { "name":"DDW44_24050 (2Fe-2S)-binding protein\tK13483 yagT; xanthine dehydrogenase YagT iron-sulfur-binding subunit" }, { "name":"DDW44_26730 (2Fe-2S)-binding protein\tK13483 yagT; xanthine dehydrogenase YagT iron-sulfur-binding subunit" }, { "name":"DDW44_18380 GMP synthase (glutamine-hydrolyzing)\tK01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]" }, { "name":"DDW44_11315 GuaB1 family IMP dehydrogenase-related protein\tK26110 guaB1; GMP reductase [EC:1.7.1.7]" }, { "name":"DDW44_11380 guanylate kinase\tK00942 gmk; guanylate kinase [EC:2.7.4.8]" }, { "name":"DDW44_20440 ribonucleoside-diphosphate reductase subunit alpha\tK00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]" }, { "name":"DDW44_23280 vitamin B12-dependent ribonucleotide reductase\tK00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]" }, { "name":"DDW44_20435 ribonucleoside-diphosphate reductase\tK00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]" }, { "name":"DDW44_07760 deoxyguanosinetriphosphate triphosphohydrolase\tK01129 dgt; dGTPase [EC:3.1.5.1]" }, { "name":"DDW44_11550 GTP pyrophosphokinase\tK01139 spoT; GTP diphosphokinase \/ guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]" }, { "name":"DDW44_11855 Ppx\/GppA family phosphatase\tK01524 ppx-gppA; exopolyphosphatase \/ guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]" }, { "name":"DDW44_17015 Ppx\/GppA family phosphatase\tK01524 ppx-gppA; exopolyphosphatase \/ guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]" }, { "name":"DDW44_19065 adenylate\/guanylate cyclase domain-containing protein\tK01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]" }, { "name":"DDW44_05525 adenylosuccinate synthase\tK01939 purA; adenylosuccinate synthase [EC:6.3.4.4]" }, { "name":"DDW44_04090 carbohydrate kinase family protein\tK00856 ADK; adenosine kinase [EC:2.7.1.20]" }, { "name":"DDW44_17885 adenosine deaminase\tK01488 add; adenosine deaminase [EC:3.5.4.4]" }, { "name":"DDW44_18925 adenosine deaminase\tK01488 add; adenosine deaminase [EC:3.5.4.4]" }, { "name":"DDW44_26435 adenosine deaminase\tK01488 add; adenosine deaminase [EC:3.5.4.4]" }, { "name":"DDW44_08030 adenosine deaminase\tK21053 ade; adenine deaminase [EC:3.5.4.2]" }, { "name":"DDW44_03255 bifunctional metallophosphatase\/5'-nucleotidase\tK01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase \/ 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]" }, { "name":"DDW44_18105 adenylate kinase\tK00939 adk; adenylate kinase [EC:2.7.4.3]" }, { "name":"DDW44_11635 HIT domain-containing protein\tK19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53]" }, { "name":"DDW44_24770 cysC; adenylyl-sulfate kinase\tK00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]" }, { "name":"DDW44_24760 sulfate adenylyltransferase\tK00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]" }, { "name":"DDW44_24765 sulfate adenylyltransferase subunit CysD\tK00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]" }, { "name":"DDW44_25770 pucL; urate oxidase\tK00365 uaZ; urate oxidase [EC:1.7.3.3]" }, { "name":"DDW44_25765 uraH; hydroxyisourate hydrolase\tK07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]" }, { "name":"DDW44_18745 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase\tK16840 hpxQ; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [EC:4.1.1.97]" }, { "name":"DDW44_25760 uraD; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase\tK16840 hpxQ; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [EC:4.1.1.97]" }, { "name":"DDW44_03840 Asp\/Glu\/hydantoin racemase\tK16841 hpxA; allantoin racemase [EC:5.1.99.3]" }, { "name":"DDW44_25960 allB; allantoinase AllB\tK01466 allB; allantoinase [EC:3.5.2.5]" }, { "name":"DDW44_25965 alc; allantoicase\tK01477 alc; allantoicase [EC:3.5.3.4]" }, { "name":"DDW44_10420 urease subunit alpha\tK01428 ureC; urease subunit alpha [EC:3.5.1.5]" }, { "name":"DDW44_21850 urease subunit alpha\tK01428 ureC; urease subunit alpha [EC:3.5.1.5]" }, { "name":"DDW44_10425 urease subunit beta\tK01429 ureB; urease subunit beta [EC:3.5.1.5]" }, { "name":"DDW44_10430 urease subunit gamma\tK01430 ureA; urease subunit gamma [EC:3.5.1.5]" }, { "name":"DDW44_21845 ureA; urease subunit gamma\tK14048 ureAB; urease subunit gamma\/beta [EC:3.5.1.5]" } ] }, { "name":"00240 Pyrimidine metabolism [PATH:stir00240]", "children":[ { "name":"DDW44_11400 carB; carbamoyl-phosphate synthase large subunit\tK01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]" }, { "name":"DDW44_11405 carbamoyl-phosphate synthase small subunit\tK01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]" }, { "name":"DDW44_11420 aspartate carbamoyltransferase\tK00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]" }, { "name":"DDW44_11415 dihydroorotase\tK01465 URA4; dihydroorotase [EC:3.5.2.3]" }, { "name":"DDW44_31120 dihydroorotase\tK01465 URA4; dihydroorotase [EC:3.5.2.3]" }, { "name":"DDW44_11395 dihydroorotate dehydrogenase (quinone)\tK00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]" }, { "name":"DDW44_05430 orotate phosphoribosyltransferase\tK00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]" }, { "name":"DDW44_11390 pyrF; orotidine-5'-phosphate decarboxylase\tK01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]" }, { "name":"DDW44_22285 UMP kinase\tK09903 pyrH; uridylate kinase [EC:2.7.4.22]" }, { "name":"DDW44_08360 nucleoside-diphosphate kinase\tK00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]" }, { "name":"DDW44_19045 septum formation inhibitor Maf\tK06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]" }, { "name":"DDW44_07275 CTP synthase\tK01937 pyrG; CTP synthase [EC:6.3.4.2]" }, { "name":"DDW44_07130 (d)CMP kinase\tK00945 cmk; CMP\/dCMP kinase [EC:2.7.4.25]" }, { "name":"DDW44_06580 bifunctional metallophosphatase\/5'-nucleotidase\tK01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]" }, { "name":"DDW44_09365 HAD family hydrolase\tK02566 nagD; 5'-nucleotidase [EC:3.1.3.5]" }, { "name":"DDW44_29330 pyrimidine-specific ribonucleoside hydrolase RihA\tK25589 inuH; inosine\/uridine nucleosidase [EC:3.2.2.2 3.2.2.3]" }, { "name":"DDW44_14420 uracil phosphoribosyltransferase\tK00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]" }, { "name":"DDW44_11425 bifunctional pyr operon transcriptional regulator\/uracil phosphoribosyltransferase PyrR\tK02825 pyrR; pyrimidine operon attenuation protein \/ uracil phosphoribosyltransferase [EC:2.4.2.9]" }, { "name":"DDW44_03255 bifunctional metallophosphatase\/5'-nucleotidase\tK01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase \/ 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]" }, { "name":"DDW44_03060 pseudouridine-5'-phosphate glycosidase\tK16329 psuG; pseudouridylate synthase [EC:4.2.1.70]" }, { "name":"DDW44_18880 cytidine deaminase\tK01489 cdd; cytidine deaminase [EC:3.5.4.5]" }, { "name":"DDW44_17850 hydrolase\tK01485 codA; cytosine\/creatinine deaminase [EC:3.5.4.1 3.5.4.21]" }, { "name":"DDW44_17330 tRNA-specific adenosine deaminase\tK03365 FCY1; cytosine\/creatinine deaminase [EC:3.5.4.1 3.5.4.21]" }, { "name":"DDW44_05295 dCTP deaminase\tK01494 dcd; dCTP deaminase [EC:3.5.4.13]" }, { "name":"DDW44_20440 ribonucleoside-diphosphate reductase subunit alpha\tK00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]" }, { "name":"DDW44_23280 vitamin B12-dependent ribonucleotide reductase\tK00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]" }, { "name":"DDW44_20435 ribonucleoside-diphosphate reductase\tK00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]" }, { "name":"DDW44_09705 tmk; dTMP kinase\tK00943 tmk; dTMP kinase [EC:2.7.4.9]" }, { "name":"DDW44_16470 dTMP kinase\tK00943 tmk; dTMP kinase [EC:2.7.4.9]" }, { "name":"DDW44_23620 dUTP diphosphatase\tK01520 dut; dUTP diphosphatase [EC:3.6.1.23]" }, { "name":"DDW44_18885 thymidine phosphorylase\tK00758 deoA; thymidine phosphorylase [EC:2.4.2.4]" }, { "name":"DDW44_23440 thymidine kinase\tK00857 tdk; thymidine kinase [EC:2.7.1.21]" }, { "name":"DDW44_23535 thymidine kinase\tK00857 tdk; thymidine kinase [EC:2.7.1.21]" }, { "name":"DDW44_22950 thymidylate synthase (FAD)\tK03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]" }, { "name":"DDW44_26210 hydA; dihydropyrimidinase\tK01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]" }, { "name":"DDW44_21730 carbon-nitrogen hydrolase family protein\tK01431 UPB1; beta-ureidopropionase [EC:3.5.1.6]" }, { "name":"DDW44_26200 acyltransferase\tK01431 UPB1; beta-ureidopropionase [EC:3.5.1.6]" }, { "name":"DDW44_11735 allantoate amidohydrolase\tK06016 pydC; beta-ureidopropionase \/ N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]" }, { "name":"DDW44_19645 malonic semialdehyde reductase\tK09019 rutE; 3-hydroxypropanoate dehydrogenase [EC:1.1.1.-]" } ] } ] }, { "name":"09105 Amino acid metabolism", "children":[ { "name":"00250 Alanine, aspartate and glutamate metabolism [PATH:stir00250]", "children":[ { "name":"DDW44_16535 aminotransferase\tK00812 aspB; aspartate aminotransferase [EC:2.6.1.1]" }, { "name":"DDW44_17890 aspartate aminotransferase\tK00812 aspB; aspartate aminotransferase [EC:2.6.1.1]" }, { "name":"DDW44_20585 aminotransferase\tK00812 aspB; aspartate aminotransferase [EC:2.6.1.1]" }, { "name":"DDW44_16895 L-aspartate oxidase\tK00278 nadB; L-aspartate oxidase [EC:1.4.3.16]" }, { "name":"DDW44_25105 asparaginase\tK01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]" }, { "name":"DDW44_25440 asnB; asparagine synthase (glutamine-hydrolyzing)\tK01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]" }, { "name":"DDW44_31105 asnB; asparagine synthase (glutamine-hydrolyzing)\tK01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]" }, { "name":"DDW44_03080 pyridoxal phosphate-dependent aminotransferase\tK14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]" }, { "name":"DDW44_19340 aminotransferase\tK14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]" }, { "name":"DDW44_07260 ald; alanine dehydrogenase\tK00259 ald; alanine dehydrogenase [EC:1.4.1.1]" }, { "name":"DDW44_25110 aspA; aspartate ammonia-lyase\tK01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]" }, { "name":"DDW44_01935 argininosuccinate synthase\tK01940 argG; argininosuccinate synthase [EC:6.3.4.5]" }, { "name":"DDW44_01930 argH; argininosuccinate lyase\tK01755 argH; argininosuccinate lyase [EC:4.3.2.1]" }, { "name":"DDW44_05525 adenylosuccinate synthase\tK01939 purA; adenylosuccinate synthase [EC:6.3.4.4]" }, { "name":"DDW44_10535 adenylosuccinate lyase\tK01756 purB; adenylosuccinate lyase [EC:4.3.2.2]" }, { "name":"DDW44_11420 aspartate carbamoyltransferase\tK00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]" }, { "name":"DDW44_16720 glutamate decarboxylase\tK01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]" }, { "name":"DDW44_26205 aspartate aminotransferase family protein\tK00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]" }, { "name":"DDW44_22435 gabT; 4-aminobutyrate--2-oxoglutarate transaminase\tK07250 gabT; 4-aminobutyrate aminotransferase \/ (S)-3-amino-2-methylpropionate transaminase \/ 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]" }, { "name":"DDW44_15860 NADP-dependent succinic semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"DDW44_18360 gabD2; succinic semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"DDW44_03385 glutamate synthase large subunit\tK00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]" }, { "name":"DDW44_03380 gltD; glutamate synthase subunit beta\tK00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]" }, { "name":"DDW44_29745 gltD; glutamate synthase\tK00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]" }, { "name":"DDW44_10025 NAD-glutamate dehydrogenase\tK15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]" }, { "name":"DDW44_16545 glutamate dehydrogenase\tK00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]" }, { "name":"DDW44_27355 glutamate dehydrogenase\tK00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]" }, { "name":"DDW44_05655 NADP-specific glutamate dehydrogenase\tK00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]" }, { "name":"DDW44_21815 pruA; 1-pyrroline-5-carboxylate dehydrogenase\tK00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88]" }, { "name":"DDW44_02115 glutamine synthetase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"DDW44_04295 glnA; type I glutamate--ammonia ligase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"DDW44_04360 glutamine synthetase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"DDW44_04460 glutamine synthetase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"DDW44_11400 carB; carbamoyl-phosphate synthase large subunit\tK01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]" }, { "name":"DDW44_11405 carbamoyl-phosphate synthase small subunit\tK01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]" }, { "name":"DDW44_17430 glutaminase\tK01425 glsA; glutaminase [EC:3.5.1.2]" }, { "name":"DDW44_14195 phosphoribosylformylglycinamidine synthase subunit PurQ\tK23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ \/ glutaminase [EC:6.3.5.3 3.5.1.2]" }, { "name":"DDW44_09020 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing)\tK00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]" }, { "name":"DDW44_18210 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing)\tK00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]" }, { "name":"DDW44_14165 amidophosphoribosyltransferase\tK00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]" } ] }, { "name":"00260 Glycine, serine and threonine metabolism [PATH:stir00260]", "children":[ { "name":"DDW44_15970 aspartate kinase\tK00928 lysC; aspartate kinase [EC:2.7.2.4]" }, { "name":"DDW44_08485 aspartate-semialdehyde dehydrogenase\tK00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]" }, { "name":"DDW44_15975 aspartate-semialdehyde dehydrogenase\tK00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]" }, { "name":"DDW44_20955 homoserine dehydrogenase\tK00003 hom; homoserine dehydrogenase [EC:1.1.1.3]" }, { "name":"DDW44_20965 homoserine kinase\tK00872 thrB; homoserine kinase [EC:2.7.1.39]" }, { "name":"DDW44_13780 threonine synthase\tK01733 thrC; threonine synthase [EC:4.2.3.1]" }, { "name":"DDW44_19775 threonine synthase\tK01733 thrC; threonine synthase [EC:4.2.3.1]" }, { "name":"DDW44_20960 threonine synthase\tK01733 thrC; threonine synthase [EC:4.2.3.1]" }, { "name":"DDW44_01420 threonine aldolase\tK01620 ltaE; threonine aldolase [EC:4.1.2.48]" }, { "name":"DDW44_18625 glyA; serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"DDW44_21010 serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"DDW44_21445 serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"DDW44_26295 glycerate kinase\tK00865 glxK; glycerate 2-kinase [EC:2.7.1.165]" }, { "name":"DDW44_06385 phosphoglyceromutase\tK01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]" }, { "name":"DDW44_21645 phosphoglycerate dehydrogenase\tK00058 serA; D-3-phosphoglycerate dehydrogenase \/ 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]" }, { "name":"DDW44_13505 serC; phosphoserine transaminase\tK00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]" }, { "name":"DDW44_07470 serB; phosphoserine phosphatase SerB\tK01079 serB; phosphoserine phosphatase [EC:3.1.3.3]" }, { "name":"DDW44_29645 glycine C-acetyltransferase\tK00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]" }, { "name":"DDW44_29640 L-threonine 3-dehydrogenase\tK00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103]" }, { "name":"DDW44_06185 flavin-containing monoamine oxidase AofH\tK00274 MAO; monoamine oxidase [EC:1.4.3.4]" }, { "name":"DDW44_10875 gcvP; glycine dehydrogenase (aminomethyl-transferring)\tK00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]" }, { "name":"DDW44_21455 gcvT; glycine cleavage system aminomethyltransferase GcvT\tK00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]" }, { "name":"DDW44_04205 lpdA; dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" }, { "name":"DDW44_21450 gcvH; glycine cleavage system protein GcvH\tK02437 gcvH; glycine cleavage system H protein" }, { "name":"DDW44_26320 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase\tK17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]" }, { "name":"DDW44_01370 FAD-binding protein\tK17755 codA; choline oxidase [EC:1.1.3.17]" }, { "name":"DDW44_00220 gamma-aminobutyraldehyde dehydrogenase\tK00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]" }, { "name":"DDW44_01365 betaine-aldehyde dehydrogenase\tK00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]" }, { "name":"DDW44_18570 betaine-aldehyde dehydrogenase\tK00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]" }, { "name":"DDW44_22355 gamma-aminobutyraldehyde dehydrogenase\tK00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]" }, { "name":"DDW44_22385 gamma-aminobutyraldehyde dehydrogenase\tK00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]" }, { "name":"DDW44_11790 cystathionine beta-synthase\tK01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]" }, { "name":"DDW44_23840 cysteine synthase\tK01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]" }, { "name":"DDW44_29235 cysteine synthase\tK01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]" }, { "name":"DDW44_14875 cystathionine gamma-lyase\tK01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]" }, { "name":"DDW44_21440 L-serine ammonia-lyase\tK01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]" }, { "name":"DDW44_19180 threonine ammonia-lyase\tK01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]" }, { "name":"DDW44_23875 threonine dehydratase\tK01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]" }, { "name":"DDW44_03435 tryptophan synthase subunit alpha\tK01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]" }, { "name":"DDW44_03440 trpB; tryptophan synthase subunit beta\tK01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]" }, { "name":"DDW44_21670 TrpB-like pyridoxal phosphate-dependent enzyme\tK06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]" }, { "name":"DDW44_02710 ectB; diaminobutyrate--2-oxoglutarate transaminase\tK00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]" }, { "name":"DDW44_23245 aspartate aminotransferase family protein\tK00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]" }, { "name":"DDW44_02705 ectA; diaminobutyrate acetyltransferase\tK06718 ectA; L-2,4-diaminobutyric acid acetyltransferase [EC:2.3.1.178]" }, { "name":"DDW44_02715 ectC; ectoine synthase\tK06720 ectC; L-ectoine synthase [EC:4.2.1.108]" }, { "name":"DDW44_02720 thpD; ectoine hydroxylase\tK10674 ectD; ectoine hydroxylase [EC:1.14.11.55]" }, { "name":"DDW44_03265 aspartate aminotransferase family protein\tK13745 ddc; L-2,4-diaminobutyrate decarboxylase [EC:4.1.1.86]" } ] }, { "name":"00270 Cysteine and methionine metabolism [PATH:stir00270]", "children":[ { "name":"DDW44_31170 serine acetyltransferase\tK00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]" }, { "name":"DDW44_31100 cysteine synthase A\tK01738 cysK; cysteine synthase [EC:2.5.1.47]" }, { "name":"DDW44_31175 cysteine synthase family protein\tK01738 cysK; cysteine synthase [EC:2.5.1.47]" }, { "name":"DDW44_14875 cystathionine gamma-lyase\tK01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]" }, { "name":"DDW44_05445 transcriptional regulator\tK14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]" }, { "name":"DDW44_11790 cystathionine beta-synthase\tK01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]" }, { "name":"DDW44_23840 cysteine synthase\tK01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]" }, { "name":"DDW44_29235 cysteine synthase\tK01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]" }, { "name":"DDW44_24095 homocysteine S-methyltransferase\tK00547 mmuM; homocysteine S-methyltransferase [EC:2.1.1.10]" }, { "name":"DDW44_02315 metH; methionine synthase\tK00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]" }, { "name":"DDW44_25475 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase\tK00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]" }, { "name":"DDW44_11365 methionine adenosyltransferase\tK00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]" }, { "name":"DDW44_31075 methionine adenosyltransferase\tK00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]" }, { "name":"DDW44_05415 polyamine aminopropyltransferase\tK00797 speE; spermidine synthase [EC:2.5.1.16]" }, { "name":"DDW44_12470 S-methyl-5'-thioadenosine phosphorylase\tK00772 mtaP; 5'-methylthioadenosine phosphorylase [EC:2.4.2.28]" }, { "name":"DDW44_03660 pgeF; peptidoglycan editing factor PgeF\tK05810 LACC1; purine-nucleoside\/S-methyl-5'-thioadenosine phosphorylase \/ adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]" }, { "name":"DDW44_10095 mtnA; S-methyl-5-thioribose-1-phosphate isomerase\tK08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23]" }, { "name":"DDW44_10590 cystathionine gamma-synthase\tK01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11]" }, { "name":"DDW44_10155 adenosylhomocysteinase\tK01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]" }, { "name":"DDW44_15970 aspartate kinase\tK00928 lysC; aspartate kinase [EC:2.7.2.4]" }, { "name":"DDW44_08485 aspartate-semialdehyde dehydrogenase\tK00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]" }, { "name":"DDW44_15975 aspartate-semialdehyde dehydrogenase\tK00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]" }, { "name":"DDW44_20955 homoserine dehydrogenase\tK00003 hom; homoserine dehydrogenase [EC:1.1.1.3]" }, { "name":"DDW44_20965 homoserine kinase\tK00872 thrB; homoserine kinase [EC:2.7.1.39]" }, { "name":"DDW44_19160 cystathionine gamma-synthase\tK01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]" }, { "name":"DDW44_01770 4-amino-4-deoxychorismate lyase\tK00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]" }, { "name":"DDW44_21835 branched-chain amino acid aminotransferase\tK00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]" }, { "name":"DDW44_28490 egtA; ergothioneine biosynthesis glutamate--cysteine ligase EgtA\tK01919 gshA; glutamate---cysteine ligase [EC:6.3.2.2]" }, { "name":"DDW44_16535 aminotransferase\tK00812 aspB; aspartate aminotransferase [EC:2.6.1.1]" }, { "name":"DDW44_17890 aspartate aminotransferase\tK00812 aspB; aspartate aminotransferase [EC:2.6.1.1]" }, { "name":"DDW44_20585 aminotransferase\tK00812 aspB; aspartate aminotransferase [EC:2.6.1.1]" }, { "name":"DDW44_06520 sulfurtransferase\tK01011 TST; thiosulfate\/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]" }, { "name":"DDW44_23555 sulfurtransferase\tK01011 TST; thiosulfate\/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]" }, { "name":"DDW44_07230 1-aminocyclopropane-1-carboxylate deaminase\tK05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15]" }, { "name":"DDW44_29980 cysteine synthase\tK28981 cds1; L-cysteine desulfidase [EC:4.4.1.28]" }, { "name":"DDW44_18565 malate dehydrogenase\tK00024 mdh; malate dehydrogenase [EC:1.1.1.37]" }, { "name":"DDW44_21440 L-serine ammonia-lyase\tK01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]" }, { "name":"DDW44_21645 phosphoglycerate dehydrogenase\tK00058 serA; D-3-phosphoglycerate dehydrogenase \/ 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]" }, { "name":"DDW44_13505 serC; phosphoserine transaminase\tK00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]" } ] }, { "name":"00280 Valine, leucine and isoleucine degradation [PATH:stir00280]", "children":[ { "name":"DDW44_01770 4-amino-4-deoxychorismate lyase\tK00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]" }, { "name":"DDW44_21835 branched-chain amino acid aminotransferase\tK00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]" }, { "name":"DDW44_14150 valine dehydrogenase\tK00271 vdh; valine dehydrogenase (NAD+) [EC:1.4.1.23]" }, { "name":"DDW44_15425 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha\tK00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]" }, { "name":"DDW44_15505 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha\tK00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]" }, { "name":"DDW44_15430 alpha-ketoacid dehydrogenase subunit beta\tK00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]" }, { "name":"DDW44_15510 alpha-ketoacid dehydrogenase subunit beta\tK00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]" }, { "name":"DDW44_15435 branched-chain alpha-keto acid dehydrogenase subunit E2\tK09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]" }, { "name":"DDW44_15515 branched-chain alpha-keto acid dehydrogenase subunit E2\tK09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]" }, { "name":"DDW44_04205 lpdA; dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" }, { "name":"DDW44_00280 acyl-CoA dehydrogenase\tK00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]" }, { "name":"DDW44_00285 acyl-CoA dehydrogenase\tK00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]" }, { "name":"DDW44_02520 acyl-CoA dehydrogenase\tK00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]" }, { "name":"DDW44_29805 acyl-CoA dehydrogenase\tK00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]" }, { "name":"DDW44_08980 acyl-CoA dehydrogenase\tK11410 acdH; short-chain 2-methylacyl-CoA dehydrogenase [EC:1.3.8.5]" }, { "name":"DDW44_21415 enoyl-CoA hydratase\tK01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]" }, { "name":"DDW44_27080 3-hydroxyacyl-CoA dehydrogenase\tK01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase \/ enoyl-CoA hydratase \/ 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]" }, { "name":"DDW44_03340 acetyl-CoA C-acetyltransferase\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"DDW44_04745 Nonspecific lipid-transfer protein\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"DDW44_05610 steroid 3-ketoacyl-CoA thiolase\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"DDW44_24435 acetyl-CoA C-acyltransferase\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"DDW44_19035 acetyl-\/propionyl-CoA carboxylase subunit alpha\tK11263 bccA; acetyl-CoA\/propionyl-CoA\/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]" }, { "name":"DDW44_19055 acyl-CoA carboxylase subunit beta\tK27094 accD5; propionyl-CoA\/long-chain acyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.3 6.4.1.- 2.1.3.15]" }, { "name":"DDW44_19050 acyl-CoA carboxylase subunit epsilon\tK27095 accE5; acyl-CoA carboxylase epsilon subunit" }, { "name":"DDW44_21170 mce; methylmalonyl-CoA epimerase\tK05606 MCEE; methylmalonyl-CoA\/ethylmalonyl-CoA epimerase [EC:5.1.99.1]" }, { "name":"DDW44_28950 mutA; methylmalonyl-CoA mutase small subunit\tK01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]" }, { "name":"DDW44_28955 methylmalonyl-CoA mutase\tK01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]" }, { "name":"DDW44_18795 methylmalonyl-CoA mutase\tK01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2]" }, { "name":"DDW44_29095 NAD(P)-dependent oxidoreductase\tK00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]" }, { "name":"DDW44_29770 2-hydroxy-3-oxopropionate reductase\tK00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]" }, { "name":"DDW44_08755 mmsA; methylmalonate-semialdehyde dehydrogenase (CoA acylating)\tK00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) \/ methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]" }, { "name":"DDW44_02590 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_04850 aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_12765 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_16710 aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_18985 betaine-aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_31145 hypothetical protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_06145 acyl-CoA synthetase\tK18661 matB; malonyl-CoA\/methylmalonyl-CoA synthetase [EC:6.2.1.76 6.2.1.-]" }, { "name":"DDW44_22435 gabT; 4-aminobutyrate--2-oxoglutarate transaminase\tK07250 gabT; 4-aminobutyrate aminotransferase \/ (S)-3-amino-2-methylpropionate transaminase \/ 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]" }, { "name":"DDW44_08970 acetyl\/propionyl-CoA carboxylase subunit alpha\tK01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4]" }, { "name":"DDW44_08965 methylcrotonoyl-CoA carboxylase\tK01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4]" }, { "name":"DDW44_08975 hydroxymethylglutaryl-CoA lyase\tK01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]" }, { "name":"DDW44_10965 acetoacetate--CoA ligase\tK01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]" }, { "name":"DDW44_11800 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_12820 acetyl-CoA C-acyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_21175 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_27075 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_29685 thiolase domain-containing protein\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" } ] }, { "name":"00290 Valine, leucine and isoleucine biosynthesis [PATH:stir00290]", "children":[ { "name":"DDW44_19180 threonine ammonia-lyase\tK01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]" }, { "name":"DDW44_23875 threonine dehydratase\tK01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]" }, { "name":"DDW44_22000 leuC; 3-isopropylmalate dehydratase large subunit\tK01703 leuC; 3-isopropylmalate\/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]" }, { "name":"DDW44_22005 leuD; 3-isopropylmalate dehydratase small subunit\tK01704 leuD; 3-isopropylmalate\/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]" }, { "name":"DDW44_21830 3-isopropylmalate dehydrogenase\tK00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]" }, { "name":"DDW44_08855 acetolactate synthase\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"DDW44_21630 acetolactate synthase large subunit\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"DDW44_31140 hypothetical protein\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"DDW44_21635 acetolactate synthase small subunit\tK01653 E2.2.1.6S; acetolactate synthase I\/III small subunit [EC:2.2.1.6]" }, { "name":"DDW44_21640 ketol-acid reductoisomerase\tK00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]" }, { "name":"DDW44_17030 dihydroxy-acid dehydratase\tK01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]" }, { "name":"DDW44_01770 4-amino-4-deoxychorismate lyase\tK00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]" }, { "name":"DDW44_21835 branched-chain amino acid aminotransferase\tK00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]" }, { "name":"DDW44_03080 pyridoxal phosphate-dependent aminotransferase\tK14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]" }, { "name":"DDW44_19340 aminotransferase\tK14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]" }, { "name":"DDW44_07960 leuA; 2-isopropylmalate synthase\tK01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]" }, { "name":"DDW44_21870 citramalate synthase\tK01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]" } ] }, { "name":"00300 Lysine biosynthesis [PATH:stir00300]", "children":[ { "name":"DDW44_20955 homoserine dehydrogenase\tK00003 hom; homoserine dehydrogenase [EC:1.1.1.3]" }, { "name":"DDW44_15970 aspartate kinase\tK00928 lysC; aspartate kinase [EC:2.7.2.4]" }, { "name":"DDW44_08485 aspartate-semialdehyde dehydrogenase\tK00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]" }, { "name":"DDW44_15975 aspartate-semialdehyde dehydrogenase\tK00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]" }, { "name":"DDW44_02780 dapA; 4-hydroxy-tetrahydrodipicolinate synthase\tK01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]" }, { "name":"DDW44_20855 dihydrodipicolinate synthase family protein\tK01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]" }, { "name":"DDW44_22955 4-hydroxy-tetrahydrodipicolinate synthase\tK01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]" }, { "name":"DDW44_22930 4-hydroxy-tetrahydrodipicolinate reductase\tK00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]" }, { "name":"DDW44_02790 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase\tK00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]" }, { "name":"DDW44_01970 acetylornithine transaminase\tK00821 argD; acetylornithine\/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]" }, { "name":"DDW44_05400 putative succinyldiaminopimelate transaminase DapC\tK14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]" }, { "name":"DDW44_06270 succinyl-diaminopimelate desuccinylase\tK01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]" }, { "name":"DDW44_19970 succinyl-diaminopimelate desuccinylase\tK01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]" }, { "name":"DDW44_23215 diaminopimelate epimerase\tK01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]" }, { "name":"DDW44_01315 diaminopimelate decarboxylase\tK01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]" }, { "name":"DDW44_11745 diaminopimelate decarboxylase\tK01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]" }, { "name":"DDW44_20950 lysA; diaminopimelate decarboxylase\tK01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]" }, { "name":"DDW44_23835 amino acid decarboxylase\tK01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]" }, { "name":"DDW44_29215 amino acid decarboxylase\tK01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]" }, { "name":"DDW44_00430 transcriptional regulator\tK05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]" }, { "name":"DDW44_16570 lysine biosynthesis protein LysW\tK05826 lysW; alpha-aminoadipate\/glutamate carrier protein LysW" }, { "name":"DDW44_16565 RimK family alpha-L-glutamate ligase\tK05827 lysX; [lysine-biosynthesis-protein LysW]---L-2-aminoadipate ligase [EC:6.3.2.43]" }, { "name":"DDW44_16555 acetylglutamate kinase\tK05828 lysZ; [amino group carrier protein]-L-2-aminoadipate\/L-glutamate 6-kinase [EC:2.7.2.17 2.7.2.19]" }, { "name":"DDW44_16560 argC; N-acetyl-gamma-glutamyl-phosphate reductase\tK05829 lysY; [amino group carrier protein]-6-phospho-L-2-aminoadipate\/5-phospho-L-glutamate reductase [EC:1.2.1.103 1.2.1.106]" }, { "name":"DDW44_03705 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase\tK01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]" }, { "name":"DDW44_03700 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase\tK01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]" } ] }, { "name":"00310 Lysine degradation [PATH:stir00310]", "children":[ { "name":"DDW44_23125 aldehyde dehydrogenase family protein\tK26061 amaB; L-aminoadipate-semialdehyde dehydrogenase" }, { "name":"DDW44_04205 lpdA; dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" }, { "name":"DDW44_07075 acyl-CoA dehydrogenase\tK00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]" }, { "name":"DDW44_21415 enoyl-CoA hydratase\tK01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]" }, { "name":"DDW44_27080 3-hydroxyacyl-CoA dehydrogenase\tK01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase \/ enoyl-CoA hydratase \/ 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]" }, { "name":"DDW44_11800 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_12820 acetyl-CoA C-acyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_21175 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_27075 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_29685 thiolase domain-containing protein\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_11275 amine oxidase\tK00468 davB; lysine 2-monooxygenase [EC:1.13.12.2]" }, { "name":"DDW44_11280 carbon-nitrogen hydrolase\tK01506 davA; 5-aminopentanamidase [EC:3.5.1.30]" }, { "name":"DDW44_22435 gabT; 4-aminobutyrate--2-oxoglutarate transaminase\tK07250 gabT; 4-aminobutyrate aminotransferase \/ (S)-3-amino-2-methylpropionate transaminase \/ 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]" }, { "name":"DDW44_15860 NADP-dependent succinic semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"DDW44_18360 gabD2; succinic semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"DDW44_06770 L-2-hydroxyglutarate oxidase\tK15736 lhgO; (S)-2-hydroxyglutarate dehydrogenase [EC:1.1.5.13]" }, { "name":"DDW44_02590 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_04850 aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_12765 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_16710 aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_18985 betaine-aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_31145 hypothetical protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" } ] }, { "name":"00220 Arginine biosynthesis [PATH:stir00220]", "children":[ { "name":"DDW44_24115 argF; ornithine carbamoyltransferase\tK00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]" }, { "name":"DDW44_01935 argininosuccinate synthase\tK01940 argG; argininosuccinate synthase [EC:6.3.4.5]" }, { "name":"DDW44_01930 argH; argininosuccinate lyase\tK01755 argH; argininosuccinate lyase [EC:4.3.2.1]" }, { "name":"DDW44_04585 amidinotransferase\tK27545 argZ; arginine dihydrolase [EC:3.5.3.27]" }, { "name":"DDW44_10420 urease subunit alpha\tK01428 ureC; urease subunit alpha [EC:3.5.1.5]" }, { "name":"DDW44_21850 urease subunit alpha\tK01428 ureC; urease subunit alpha [EC:3.5.1.5]" }, { "name":"DDW44_10425 urease subunit beta\tK01429 ureB; urease subunit beta [EC:3.5.1.5]" }, { "name":"DDW44_10430 urease subunit gamma\tK01430 ureA; urease subunit gamma [EC:3.5.1.5]" }, { "name":"DDW44_21845 ureA; urease subunit gamma\tK14048 ureAB; urease subunit gamma\/beta [EC:3.5.1.5]" }, { "name":"DDW44_24110 arginine deiminase\tK01478 arcA; arginine deiminase [EC:3.5.3.6]" }, { "name":"DDW44_01525 nitric oxide synthase oxygenase\tK00491 nos; nitric-oxide synthase, bacterial [EC:1.14.14.47]" }, { "name":"DDW44_17430 glutaminase\tK01425 glsA; glutaminase [EC:3.5.1.2]" }, { "name":"DDW44_14195 phosphoribosylformylglycinamidine synthase subunit PurQ\tK23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ \/ glutaminase [EC:6.3.5.3 3.5.1.2]" }, { "name":"DDW44_02115 glutamine synthetase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"DDW44_04295 glnA; type I glutamate--ammonia ligase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"DDW44_04360 glutamine synthetase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"DDW44_04460 glutamine synthetase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"DDW44_11400 carB; carbamoyl-phosphate synthase large subunit\tK01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]" }, { "name":"DDW44_11405 carbamoyl-phosphate synthase small subunit\tK01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]" }, { "name":"DDW44_10025 NAD-glutamate dehydrogenase\tK15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]" }, { "name":"DDW44_16545 glutamate dehydrogenase\tK00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]" }, { "name":"DDW44_27355 glutamate dehydrogenase\tK00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]" }, { "name":"DDW44_05655 NADP-specific glutamate dehydrogenase\tK00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]" }, { "name":"DDW44_16535 aminotransferase\tK00812 aspB; aspartate aminotransferase [EC:2.6.1.1]" }, { "name":"DDW44_17890 aspartate aminotransferase\tK00812 aspB; aspartate aminotransferase [EC:2.6.1.1]" }, { "name":"DDW44_20585 aminotransferase\tK00812 aspB; aspartate aminotransferase [EC:2.6.1.1]" }, { "name":"DDW44_03080 pyridoxal phosphate-dependent aminotransferase\tK14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]" }, { "name":"DDW44_19340 aminotransferase\tK14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]" }, { "name":"DDW44_16925 amino-acid N-acetyltransferase\tK00619 argA; amino-acid N-acetyltransferase [EC:2.3.1.1]" }, { "name":"DDW44_01980 bifunctional ornithine acetyltransferase\/N-acetylglutamate synthase\tK00620 argJ; glutamate N-acetyltransferase \/ amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]" }, { "name":"DDW44_19945 GNAT family N-acetyltransferase\tK22476 K22476; N-acetylglutamate synthase [EC:2.3.1.1]" }, { "name":"DDW44_01975 argB; acetylglutamate kinase\tK00930 argB; acetylglutamate kinase [EC:2.7.2.8]" }, { "name":"DDW44_01985 N-acetyl-gamma-glutamyl-phosphate reductase\tK00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]" }, { "name":"DDW44_01970 acetylornithine transaminase\tK00821 argD; acetylornithine\/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]" }, { "name":"DDW44_16570 lysine biosynthesis protein LysW\tK05826 lysW; alpha-aminoadipate\/glutamate carrier protein LysW" }, { "name":"DDW44_16555 acetylglutamate kinase\tK05828 lysZ; [amino group carrier protein]-L-2-aminoadipate\/L-glutamate 6-kinase [EC:2.7.2.17 2.7.2.19]" }, { "name":"DDW44_16560 argC; N-acetyl-gamma-glutamyl-phosphate reductase\tK05829 lysY; [amino group carrier protein]-6-phospho-L-2-aminoadipate\/5-phospho-L-glutamate reductase [EC:1.2.1.103 1.2.1.106]" } ] }, { "name":"00330 Arginine and proline metabolism [PATH:stir00330]", "children":[ { "name":"DDW44_17850 hydrolase\tK01485 codA; cytosine\/creatinine deaminase [EC:3.5.4.1 3.5.4.21]" }, { "name":"DDW44_17330 tRNA-specific adenosine deaminase\tK03365 FCY1; cytosine\/creatinine deaminase [EC:3.5.4.1 3.5.4.21]" }, { "name":"DDW44_01185 amino acid decarboxylase\tK01585 speA; arginine decarboxylase [EC:4.1.1.19]" }, { "name":"DDW44_21855 agmatine deiminase family protein\tK10536 aguA; agmatine deiminase [EC:3.5.3.12]" }, { "name":"DDW44_05415 polyamine aminopropyltransferase\tK00797 speE; spermidine synthase [EC:2.5.1.16]" }, { "name":"DDW44_02590 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_04850 aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_12765 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_16710 aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_18985 betaine-aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_31145 hypothetical protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_00600 N-acetyltransferase\tK00657 speG; diamine N-acetyltransferase [EC:2.3.1.57]" }, { "name":"DDW44_06185 flavin-containing monoamine oxidase AofH\tK00274 MAO; monoamine oxidase [EC:1.4.3.4]" }, { "name":"DDW44_08860 speB; agmatinase\tK25365 gbh; guanidinobutyrase \/ D-arginase [EC:3.5.3.7 3.5.3.10]" }, { "name":"DDW44_00460 amidase\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"DDW44_26230 amidase\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"DDW44_27350 amidase\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"DDW44_28920 amidase\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"DDW44_30530 amidase\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"DDW44_01525 nitric oxide synthase oxygenase\tK00491 nos; nitric-oxide synthase, bacterial [EC:1.14.14.47]" }, { "name":"DDW44_04585 amidinotransferase\tK27545 argZ; arginine dihydrolase [EC:3.5.3.27]" }, { "name":"DDW44_18620 rocD; ornithine--oxo-acid transaminase\tK00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13]" }, { "name":"DDW44_27275 aspartate aminotransferase family protein\tK00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13]" }, { "name":"DDW44_17065 proC; pyrroline-5-carboxylate reductase\tK00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]" }, { "name":"DDW44_00400 proline dehydrogenase\tK00318 PRODH; proline dehydrogenase [EC:1.5.5.2]" }, { "name":"DDW44_21810 proline dehydrogenase\tK00318 PRODH; proline dehydrogenase [EC:1.5.5.2]" }, { "name":"DDW44_21815 pruA; 1-pyrroline-5-carboxylate dehydrogenase\tK00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88]" }, { "name":"DDW44_08230 glutamate 5-kinase\tK00931 proB; glutamate 5-kinase [EC:2.7.2.11]" }, { "name":"DDW44_08220 glutamate-5-semialdehyde dehydrogenase\tK00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]" }, { "name":"DDW44_15850 pip; prolyl aminopeptidase\tK01259 pip; proline iminopeptidase [EC:3.4.11.5]" }, { "name":"DDW44_16535 aminotransferase\tK00812 aspB; aspartate aminotransferase [EC:2.6.1.1]" }, { "name":"DDW44_17890 aspartate aminotransferase\tK00812 aspB; aspartate aminotransferase [EC:2.6.1.1]" }, { "name":"DDW44_20585 aminotransferase\tK00812 aspB; aspartate aminotransferase [EC:2.6.1.1]" }, { "name":"DDW44_24195 proline racemase\tK01777 prdF; proline racemase [EC:5.1.1.4]" } ] }, { "name":"00340 Histidine metabolism [PATH:stir00340]", "children":[ { "name":"DDW44_11215 ATP phosphoribosyltransferase\tK00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]" }, { "name":"DDW44_11220 phosphoribosyl-ATP diphosphatase\tK01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]" }, { "name":"DDW44_03475 phosphoribosyl-AMP cyclohydrolase\tK01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]" }, { "name":"DDW44_03500 bifunctional 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase\/phosphoribosylanthranilate isomerase PriA\tK24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24]" }, { "name":"DDW44_03505 imidazole glycerol phosphate synthase subunit HisH\tK02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]" }, { "name":"DDW44_03490 imidazole glycerol phosphate synthase subunit HisF\tK02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]" }, { "name":"DDW44_03510 imidazoleglycerol-phosphate dehydratase HisB\tK01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]" }, { "name":"DDW44_02685 threonine-phosphate decarboxylase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"DDW44_03515 histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"DDW44_14815 hisC; histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"DDW44_29230 hisC; histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"DDW44_20360 hisN; histidinol-phosphatase\tK05602 hisN; histidinol-phosphatase [EC:3.1.3.15]" }, { "name":"DDW44_03520 hisD; histidinol dehydrogenase\tK00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]" }, { "name":"DDW44_19080 hutH; histidine ammonia-lyase\tK01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]" }, { "name":"DDW44_11740 urocanate hydratase\tK01712 hutU; urocanate hydratase [EC:4.2.1.49]" }, { "name":"DDW44_11710 imidazolonepropionase\tK01468 hutI; imidazolonepropionase [EC:3.5.2.7]" }, { "name":"DDW44_02590 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_04850 aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_12765 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_16710 aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_18985 betaine-aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_31145 hypothetical protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_06185 flavin-containing monoamine oxidase AofH\tK00274 MAO; monoamine oxidase [EC:1.4.3.4]" }, { "name":"DDW44_28475 egtD; L-histidine N(alpha)-methyltransferase\tK18911 egtD; L-histidine Nalpha-methyltransferase [EC:2.1.1.44]" }, { "name":"DDW44_28490 egtA; ergothioneine biosynthesis glutamate--cysteine ligase EgtA\tK01919 gshA; glutamate---cysteine ligase [EC:6.3.2.2]" }, { "name":"DDW44_28485 ergothioneine biosynthesis protein EgtB\tK18912 egtB; gamma-glutamyl hercynylcysteine S-oxide synthase [EC:1.14.99.50]" }, { "name":"DDW44_28480 egtC; ergothioneine biosynthesis protein EgtC\tK07008 egtC; gamma-glutamyl hercynylcysteine S-oxide hydrolase [EC:3.5.1.118]" } ] }, { "name":"00350 Tyrosine metabolism [PATH:stir00350]", "children":[ { "name":"DDW44_16535 aminotransferase\tK00812 aspB; aspartate aminotransferase [EC:2.6.1.1]" }, { "name":"DDW44_17890 aspartate aminotransferase\tK00812 aspB; aspartate aminotransferase [EC:2.6.1.1]" }, { "name":"DDW44_20585 aminotransferase\tK00812 aspB; aspartate aminotransferase [EC:2.6.1.1]" }, { "name":"DDW44_02685 threonine-phosphate decarboxylase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"DDW44_03515 histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"DDW44_14815 hisC; histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"DDW44_29230 hisC; histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"DDW44_09665 hppD; 4-hydroxyphenylpyruvate dioxygenase\tK00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]" }, { "name":"DDW44_02605 hmgA; homogentisate 1,2-dioxygenase\tK00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]" }, { "name":"DDW44_17520 fahA; fumarylacetoacetase\tK01555 FAH; fumarylacetoacetase [EC:3.7.1.2]" }, { "name":"DDW44_28445 tyrosinase\tK00505 TYR; tyrosinase [EC:1.14.18.1]" }, { "name":"DDW44_21740 mfnA; tyrosine decarboxylase MfnA\tK18933 mfnA; tyrosine decarboxylase \/ aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11]" }, { "name":"DDW44_05640 O-methyltransferase\tK00545 COMT; catechol O-methyltransferase [EC:2.1.1.6]" }, { "name":"DDW44_06185 flavin-containing monoamine oxidase AofH\tK00274 MAO; monoamine oxidase [EC:1.4.3.4]" }, { "name":"DDW44_02585 alcohol dehydrogenase\tK00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase \/ alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]" }, { "name":"DDW44_04725 Zn-dependent alcohol dehydrogenase\tK00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase \/ alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]" }, { "name":"DDW44_01395 zinc-binding alcohol dehydrogenase family protein\tK13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]" }, { "name":"DDW44_31095 aldolase\tK02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52]" }, { "name":"DDW44_15860 NADP-dependent succinic semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"DDW44_18360 gabD2; succinic semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"DDW44_03000 maleylpyruvate isomerase family mycothiol-dependent enzyme\tK16163 K16163; maleylpyruvate isomerase [EC:5.2.1.4]" } ] }, { "name":"00360 Phenylalanine metabolism [PATH:stir00360]", "children":[ { "name":"DDW44_06185 flavin-containing monoamine oxidase AofH\tK00274 MAO; monoamine oxidase [EC:1.4.3.4]" }, { "name":"DDW44_29605 paaF; phenylacetate--CoA ligase\tK01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30]" }, { "name":"DDW44_15385 1,2-phenylacetyl-CoA epoxidase subunit A\tK02609 paaA; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149]" }, { "name":"DDW44_15380 1,2-phenylacetyl-CoA epoxidase subunit B\tK02610 paaB; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB" }, { "name":"DDW44_15375 paaI; phenylacetate-CoA oxygenase subunit PaaI\tK02611 paaC; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC [EC:1.14.13.149]" }, { "name":"DDW44_15370 paaJ; phenylacetate-CoA oxygenase subunit PaaJ\tK02612 paaD; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD" }, { "name":"DDW44_15365 phenylacetic acid degradation protein\tK02613 paaE; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE" }, { "name":"DDW44_13225 enoyl-CoA hydratase\tK15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]" }, { "name":"DDW44_19995 enoyl-CoA hydratase\tK15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]" }, { "name":"DDW44_21415 enoyl-CoA hydratase\tK01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]" }, { "name":"DDW44_00290 3-hydroxybutyryl-CoA dehydrogenase\tK00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]" }, { "name":"DDW44_02020 3-hydroxybutyryl-CoA dehydrogenase\tK00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]" }, { "name":"DDW44_12830 3-hydroxyacyl-CoA dehydrogenase\tK00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]" }, { "name":"DDW44_15410 3-hydroxyacyl-CoA dehydrogenase\tK00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]" }, { "name":"DDW44_21105 3-hydroxybutyryl-CoA dehydrogenase\tK00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]" }, { "name":"DDW44_25480 3-hydroxybutyryl-CoA dehydrogenase\tK00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]" }, { "name":"DDW44_26360 3-hydroxybutyryl-CoA dehydrogenase\tK00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]" }, { "name":"DDW44_16535 aminotransferase\tK00812 aspB; aspartate aminotransferase [EC:2.6.1.1]" }, { "name":"DDW44_17890 aspartate aminotransferase\tK00812 aspB; aspartate aminotransferase [EC:2.6.1.1]" }, { "name":"DDW44_20585 aminotransferase\tK00812 aspB; aspartate aminotransferase [EC:2.6.1.1]" }, { "name":"DDW44_02685 threonine-phosphate decarboxylase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"DDW44_03515 histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"DDW44_14815 hisC; histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"DDW44_29230 hisC; histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"DDW44_09665 hppD; 4-hydroxyphenylpyruvate dioxygenase\tK00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]" }, { "name":"DDW44_00550 katG; catalase\/peroxidase HPI\tK03782 katG; catalase-peroxidase [EC:1.11.1.21]" }, { "name":"DDW44_00460 amidase\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"DDW44_26230 amidase\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"DDW44_27350 amidase\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"DDW44_28920 amidase\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"DDW44_30530 amidase\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"DDW44_02825 non-heme iron oxygenase ferredoxin subunit\tK05710 hcaC; 3-phenylpropionate\/trans-cinnamate dioxygenase ferredoxin component" }, { "name":"DDW44_03845 oxidoreductase\tK00529 hcaD; 3-phenylpropionate\/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]" }, { "name":"DDW44_07755 FAD-dependent oxidoreductase\tK00529 hcaD; 3-phenylpropionate\/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]" }, { "name":"DDW44_01585 dmpG; 4-hydroxy-2-oxovalerate aldolase\tK01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]" }, { "name":"DDW44_01590 acetaldehyde dehydrogenase (acetylating)\tK04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10]" } ] }, { "name":"00380 Tryptophan metabolism [PATH:stir00380]", "children":[ { "name":"DDW44_05460 kynA; tryptophan 2,3-dioxygenase\tK00453 TDO2; tryptophan 2,3-dioxygenase [EC:1.13.11.11]" }, { "name":"DDW44_05465 kynU; kynureninase\tK01556 KYNU; kynureninase [EC:3.7.1.3]" }, { "name":"DDW44_04205 lpdA; dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" }, { "name":"DDW44_07075 acyl-CoA dehydrogenase\tK00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]" }, { "name":"DDW44_21415 enoyl-CoA hydratase\tK01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]" }, { "name":"DDW44_27080 3-hydroxyacyl-CoA dehydrogenase\tK01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase \/ enoyl-CoA hydratase \/ 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]" }, { "name":"DDW44_11800 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_12820 acetyl-CoA C-acyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_21175 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_27075 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_29685 thiolase domain-containing protein\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_06185 flavin-containing monoamine oxidase AofH\tK00274 MAO; monoamine oxidase [EC:1.4.3.4]" }, { "name":"DDW44_02590 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_04850 aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_12765 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_16710 aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_18985 betaine-aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_31145 hypothetical protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_00460 amidase\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"DDW44_26230 amidase\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"DDW44_27350 amidase\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"DDW44_28920 amidase\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"DDW44_30530 amidase\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"DDW44_19600 catalase\tK03781 katE; catalase [EC:1.11.1.6]" }, { "name":"DDW44_20350 catalase\tK03781 katE; catalase [EC:1.11.1.6]" }, { "name":"DDW44_25665 catalase\tK03781 katE; catalase [EC:1.11.1.6]" }, { "name":"DDW44_00550 katG; catalase\/peroxidase HPI\tK03782 katG; catalase-peroxidase [EC:1.11.1.21]" } ] }, { "name":"00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:stir00400]", "children":[ { "name":"DDW44_03895 3-deoxy-7-phosphoheptulonate synthase class II\tK01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]" }, { "name":"DDW44_11460 3-dehydroquinate synthase\tK01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]" }, { "name":"DDW44_11455 aroQ; type II 3-dehydroquinate dehydratase\tK03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]" }, { "name":"DDW44_11465 shikimate kinase\tK00891 aroK; shikimate kinase [EC:2.7.1.71]" }, { "name":"DDW44_20380 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase\tK00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]" }, { "name":"DDW44_11470 aroC; chorismate synthase\tK01736 aroC; chorismate synthase [EC:4.2.3.5]" }, { "name":"DDW44_03470 anthranilate synthase component I\tK01657 trpE; anthranilate synthase component I [EC:4.1.3.27]" }, { "name":"DDW44_04035 trpD; anthranilate phosphoribosyltransferase\tK00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]" }, { "name":"DDW44_13235 phosphoribosylanthranilate isomerase\tK01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]" }, { "name":"DDW44_03500 bifunctional 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase\/phosphoribosylanthranilate isomerase PriA\tK24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24]" }, { "name":"DDW44_03450 indole-3-glycerol phosphate synthase TrpC\tK01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]" }, { "name":"DDW44_03435 tryptophan synthase subunit alpha\tK01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]" }, { "name":"DDW44_03440 trpB; tryptophan synthase subunit beta\tK01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]" }, { "name":"DDW44_21670 TrpB-like pyridoxal phosphate-dependent enzyme\tK06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]" }, { "name":"DDW44_03275 chorismate mutase\tK04092 tyrA1; chorismate mutase [EC:5.4.99.5]" }, { "name":"DDW44_18375 chorismate mutase\tK04093 pheA1; chorismate mutase [EC:5.4.99.5]" }, { "name":"DDW44_07140 aroH; chorismate mutase\tK06208 aroH; chorismate mutase [EC:5.4.99.5]" }, { "name":"DDW44_07135 prephenate dehydrogenase\tK04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]" }, { "name":"DDW44_31420 prephenate dehydrogenase\/arogenate dehydrogenase family protein\tK04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]" }, { "name":"DDW44_14720 prephenate dehydratase\tK04518 pheA2; prephenate dehydratase [EC:4.2.1.51]" }, { "name":"DDW44_16535 aminotransferase\tK00812 aspB; aspartate aminotransferase [EC:2.6.1.1]" }, { "name":"DDW44_17890 aspartate aminotransferase\tK00812 aspB; aspartate aminotransferase [EC:2.6.1.1]" }, { "name":"DDW44_20585 aminotransferase\tK00812 aspB; aspartate aminotransferase [EC:2.6.1.1]" }, { "name":"DDW44_02685 threonine-phosphate decarboxylase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"DDW44_03515 histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"DDW44_14815 hisC; histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"DDW44_29230 hisC; histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"DDW44_31235 reactive intermediate\/imine deaminase\tK18240 xanB2; chorismate lyase \/ 3-hydroxybenzoate synthase [EC:4.1.3.40 4.1.3.45]" } ] } ] }, { "name":"09106 Metabolism of other amino acids", "children":[ { "name":"00410 beta-Alanine metabolism [PATH:stir00410]", "children":[ { "name":"DDW44_28245 aspartate 1-decarboxylase\tK01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]" }, { "name":"DDW44_21740 mfnA; tyrosine decarboxylase MfnA\tK18933 mfnA; tyrosine decarboxylase \/ aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11]" }, { "name":"DDW44_16720 glutamate decarboxylase\tK01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]" }, { "name":"DDW44_26205 aspartate aminotransferase family protein\tK00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]" }, { "name":"DDW44_22435 gabT; 4-aminobutyrate--2-oxoglutarate transaminase\tK07250 gabT; 4-aminobutyrate aminotransferase \/ (S)-3-amino-2-methylpropionate transaminase \/ 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]" }, { "name":"DDW44_15905 aspartate aminotransferase family protein\tK15372 toa; taurine---2-oxoglutarate transaminase [EC:2.6.1.55]" }, { "name":"DDW44_02590 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_04850 aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_12765 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_16710 aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_18985 betaine-aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_31145 hypothetical protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_16890 pantoate--beta-alanine ligase\tK01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]" }, { "name":"DDW44_26210 hydA; dihydropyrimidinase\tK01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]" }, { "name":"DDW44_21730 carbon-nitrogen hydrolase family protein\tK01431 UPB1; beta-ureidopropionase [EC:3.5.1.6]" }, { "name":"DDW44_26200 acyltransferase\tK01431 UPB1; beta-ureidopropionase [EC:3.5.1.6]" }, { "name":"DDW44_11735 allantoate amidohydrolase\tK06016 pydC; beta-ureidopropionase \/ N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]" }, { "name":"DDW44_21415 enoyl-CoA hydratase\tK01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]" }, { "name":"DDW44_27080 3-hydroxyacyl-CoA dehydrogenase\tK01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase \/ enoyl-CoA hydratase \/ 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]" }, { "name":"DDW44_08755 mmsA; methylmalonate-semialdehyde dehydrogenase (CoA acylating)\tK00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) \/ methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]" } ] }, { "name":"00430 Taurine and hypotaurine metabolism [PATH:stir00430]", "children":[ { "name":"DDW44_16720 glutamate decarboxylase\tK01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]" }, { "name":"DDW44_26155 ggt; gamma-glutamyltransferase\tK00681 ggt; gamma-glutamyltranspeptidase \/ glutathione hydrolase [EC:2.3.2.2 3.4.19.13]" }, { "name":"DDW44_07260 ald; alanine dehydrogenase\tK00259 ald; alanine dehydrogenase [EC:1.4.1.1]" }, { "name":"DDW44_15905 aspartate aminotransferase family protein\tK15372 toa; taurine---2-oxoglutarate transaminase [EC:2.6.1.55]" }, { "name":"DDW44_10025 NAD-glutamate dehydrogenase\tK15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]" }, { "name":"DDW44_21285 phosphate acetyltransferase\tK13788 pta; phosphate acetyltransferase [EC:2.3.1.8]" }, { "name":"DDW44_21280 acetate kinase\tK00925 ackA; acetate kinase [EC:2.7.2.1]" } ] }, { "name":"00440 Phosphonate and phosphinate metabolism" }, { "name":"00450 Selenocompound metabolism [PATH:stir00450]", "children":[ { "name":"DDW44_19160 cystathionine gamma-synthase\tK01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]" }, { "name":"DDW44_05445 transcriptional regulator\tK14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]" }, { "name":"DDW44_02315 metH; methionine synthase\tK00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]" }, { "name":"DDW44_25475 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase\tK00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]" }, { "name":"DDW44_14875 cystathionine gamma-lyase\tK01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]" }, { "name":"DDW44_10590 cystathionine gamma-synthase\tK01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11]" }, { "name":"DDW44_02815 cysteine desulfurase\tK11717 sufS; cysteine desulfurase \/ selenocysteine lyase [EC:2.8.1.7 4.4.1.16]" }, { "name":"DDW44_15020 trxB; thioredoxin-disulfide reductase\tK00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]" }, { "name":"DDW44_24760 sulfate adenylyltransferase\tK00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]" }, { "name":"DDW44_24765 sulfate adenylyltransferase subunit CysD\tK00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]" }, { "name":"DDW44_04625 methionine--tRNA ligase\tK01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]" }, { "name":"DDW44_04885 methionine--tRNA ligase\tK01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]" } ] }, { "name":"00460 Cyanoamino acid metabolism [PATH:stir00460]", "children":[ { "name":"DDW44_09105 beta-glucosidase\tK05350 bglB; beta-glucosidase [EC:3.2.1.21]" }, { "name":"DDW44_24645 beta-glucosidase\tK05350 bglB; beta-glucosidase [EC:3.2.1.21]" }, { "name":"DDW44_26155 ggt; gamma-glutamyltransferase\tK00681 ggt; gamma-glutamyltranspeptidase \/ glutathione hydrolase [EC:2.3.2.2 3.4.19.13]" }, { "name":"DDW44_25105 asparaginase\tK01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]" }, { "name":"DDW44_18625 glyA; serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"DDW44_21010 serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"DDW44_21445 serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"DDW44_00525 acetamidase\/formamidase family protein\tK01455 fmdA; formamidase [EC:3.5.1.49]" } ] }, { "name":"00470 D-Amino acid metabolism [PATH:stir00470]", "children":[ { "name":"DDW44_18225 alanine racemase\tK01775 alr; alanine racemase [EC:5.1.1.1]" }, { "name":"DDW44_22040 D-alanine--D-alanine ligase A\tK01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]" }, { "name":"DDW44_17430 glutaminase\tK01425 glsA; glutaminase [EC:3.5.1.2]" }, { "name":"DDW44_14195 phosphoribosylformylglycinamidine synthase subunit PurQ\tK23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ \/ glutaminase [EC:6.3.5.3 3.5.1.2]" }, { "name":"DDW44_30030 glutamate racemase\tK01776 murI; glutamate racemase [EC:5.1.1.3]" }, { "name":"DDW44_03690 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase\tK01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]" }, { "name":"DDW44_20880 mandelate racemase\/muconate lactonizing protein\tK19802 ycjG; L-Ala-D\/L-Glu epimerase \/ N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25]" }, { "name":"DDW44_07230 1-aminocyclopropane-1-carboxylate deaminase\tK05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15]" }, { "name":"DDW44_23215 diaminopimelate epimerase\tK01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]" }, { "name":"DDW44_01315 diaminopimelate decarboxylase\tK01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]" }, { "name":"DDW44_11745 diaminopimelate decarboxylase\tK01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]" }, { "name":"DDW44_20950 lysA; diaminopimelate decarboxylase\tK01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]" }, { "name":"DDW44_23835 amino acid decarboxylase\tK01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]" }, { "name":"DDW44_29215 amino acid decarboxylase\tK01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]" }, { "name":"DDW44_08860 speB; agmatinase\tK25365 gbh; guanidinobutyrase \/ D-arginase [EC:3.5.3.7 3.5.3.10]" }, { "name":"DDW44_24195 proline racemase\tK01777 prdF; proline racemase [EC:5.1.1.4]" }, { "name":"DDW44_24185 FAD\/NAD(P)-binding oxidoreductase\tK22549 lhpC; D-hydroxyproline dehydrogenase subunit alpha [EC:1.5.99.-]" }, { "name":"DDW44_24175 FAD-dependent oxidoreductase\tK21061 lhpB; D-hydroxyproline dehydrogenase subunit beta [EC:1.5.99.-]" }, { "name":"DDW44_24190 dihydrodipicolinate synthase family protein\tK21062 lhpC; 1-pyrroline-4-hydroxy-2-carboxylate deaminase [EC:3.5.4.22]" } ] }, { "name":"00480 Glutathione metabolism [PATH:stir00480]", "children":[ { "name":"DDW44_26155 ggt; gamma-glutamyltransferase\tK00681 ggt; gamma-glutamyltranspeptidase \/ glutathione hydrolase [EC:2.3.2.2 3.4.19.13]" }, { "name":"DDW44_11080 5-oxoprolinase\tK01469 OPLAH; 5-oxoprolinase (ATP-hydrolysing) [EC:3.5.2.9]" }, { "name":"DDW44_11065 LamB\/YcsF family protein\tK07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]" }, { "name":"DDW44_28805 carboxylate--amine ligase\tK06048 gshA; glutamate---cysteine ligase \/ carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-]" }, { "name":"DDW44_29145 carboxylate--amine ligase\tK06048 gshA; glutamate---cysteine ligase \/ carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-]" }, { "name":"DDW44_28490 egtA; ergothioneine biosynthesis glutamate--cysteine ligase EgtA\tK01919 gshA; glutamate---cysteine ligase [EC:6.3.2.2]" }, { "name":"DDW44_04200 leucyl aminopeptidase\tK01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]" }, { "name":"DDW44_03270 pepN; aminopeptidase N\tK01256 pepN; aminopeptidase N [EC:3.4.11.2]" }, { "name":"DDW44_08470 pepN; aminopeptidase N\tK01256 pepN; aminopeptidase N [EC:3.4.11.2]" }, { "name":"DDW44_08490 pepN; aminopeptidase N\tK01256 pepN; aminopeptidase N [EC:3.4.11.2]" }, { "name":"DDW44_30390 hypothetical protein\tK00799 GST; glutathione S-transferase [EC:2.5.1.18]" }, { "name":"DDW44_01375 NADP-dependent isocitrate dehydrogenase\tK00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]" }, { "name":"DDW44_15095 gnd; decarboxylating 6-phosphogluconate dehydrogenase\tK00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]" }, { "name":"DDW44_24670 gnd; decarboxylating 6-phosphogluconate dehydrogenase\tK00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]" }, { "name":"DDW44_28260 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating)\tK00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]" }, { "name":"DDW44_02885 glucose-6-phosphate dehydrogenase\tK00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]" }, { "name":"DDW44_24675 zwf; glucose-6-phosphate dehydrogenase\tK00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]" }, { "name":"DDW44_01665 glutathione peroxidase\tK00432 gpx; glutathione peroxidase [EC:1.11.1.9]" }, { "name":"DDW44_27735 glutathione peroxidase\tK00432 gpx; glutathione peroxidase [EC:1.11.1.9]" }, { "name":"DDW44_05415 polyamine aminopropyltransferase\tK00797 speE; spermidine synthase [EC:2.5.1.16]" } ] } ] }, { "name":"09107 Glycan biosynthesis and metabolism", "children":[ { "name":"00520 Amino sugar and nucleotide sugar metabolism [PATH:stir00520]", "children":[ { "name":"DDW44_28935 anhydro-N-acetylmuramic acid kinase\tK09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]" }, { "name":"DDW44_10950 phosphoenolpyruvate--carbohydrate phosphotransferase\tK02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]" }, { "name":"DDW44_13710 murQ; N-acetylmuramic acid 6-phosphate etherase\tK07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]" }, { "name":"DDW44_09530 PTS lactose transporter subunit IIC\tK02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]" }, { "name":"DDW44_09535 PTS lactose transporter subunit IIC\tK02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]" }, { "name":"DDW44_12055 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase\/glucosamine-1-phosphate N-acetyltransferase GlmU\tK04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase \/ glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]" }, { "name":"DDW44_08275 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)\tK01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]" }, { "name":"DDW44_09760 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase\tK00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]" }, { "name":"DDW44_24220 UDP-N-acetylglucosamine 1-carboxyvinyltransferase\tK00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]" }, { "name":"DDW44_17880 UDP-N-acetylenolpyruvoylglucosamine reductase\tK00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]" }, { "name":"DDW44_21080 chitinase\tK01183 E3.2.1.14; chitinase [EC:3.2.1.14]" }, { "name":"DDW44_08810 beta-N-acetylhexosaminidase\tK01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]" }, { "name":"DDW44_20480 sugar hydrolase\tK01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]" }, { "name":"DDW44_18750 beta-N-acetylglucosaminidase\tK12373 HEXA_B; hexosaminidase [EC:3.2.1.52]" }, { "name":"DDW44_27010 chitosanase\tK01233 csn; chitosanase [EC:3.2.1.132]" }, { "name":"DDW44_13820 nagA; N-acetylglucosamine-6-phosphate deacetylase\tK01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]" }, { "name":"DDW44_18170 phosphoglucosamine mutase\tK03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]" }, { "name":"DDW44_20485 nagB; glucosamine-6-phosphate deaminase\tK02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]" }, { "name":"DDW44_09020 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing)\tK00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]" }, { "name":"DDW44_18210 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing)\tK00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]" }, { "name":"DDW44_02990 carbohydrate kinase\tK00847 E2.7.1.4; fructokinase [EC:2.7.1.4]" }, { "name":"DDW44_02920 glucose-6-phosphate isomerase\tK01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]" }, { "name":"DDW44_10165 manA; mannose-6-phosphate isomerase, class I\tK01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]" }, { "name":"DDW44_03950 glucokinase\tK25026 glk; glucokinase [EC:2.7.1.2]" }, { "name":"DDW44_13815 sugar kinase\tK25026 glk; glucokinase [EC:2.7.1.2]" }, { "name":"DDW44_26105 glucokinase\tK25026 glk; glucokinase [EC:2.7.1.2]" }, { "name":"DDW44_29900 hypothetical protein\tK25026 glk; glucokinase [EC:2.7.1.2]" }, { "name":"DDW44_19665 polyphosphate glucokinase\tK00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]" }, { "name":"DDW44_29105 alpha-D-glucose phosphate-specific phosphoglucomutase\tK01835 pgm; phosphoglucomutase [EC:5.4.2.2]" }, { "name":"DDW44_12425 galU; UTP--glucose-1-phosphate uridylyltransferase\tK00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]" }, { "name":"DDW44_10305 UDP-glucose\/GDP-mannose dehydrogenase family protein\tK00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]" }, { "name":"DDW44_26650 galK; galactokinase\tK00849 galK; galactokinase [EC:2.7.1.6]" }, { "name":"DDW44_26655 galT; galactose-1-phosphate uridylyltransferase\tK00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]" }, { "name":"DDW44_08290 galE; UDP-glucose 4-epimerase GalE\tK01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]" }, { "name":"DDW44_12125 galE; UDP-glucose 4-epimerase GalE\tK01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]" }, { "name":"DDW44_17135 NAD-dependent dehydratase\tK01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]" }, { "name":"DDW44_27200 galE; UDP-glucose 4-epimerase GalE\tK01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]" }, { "name":"DDW44_10180 phosphomannomutase\/phosphoglucomutase\tK01840 manB; phosphomannomutase [EC:5.4.2.8]" }, { "name":"DDW44_19005 phosphomannomutase\tK01840 manB; phosphomannomutase [EC:5.4.2.8]" }, { "name":"DDW44_10925 mannose-1-phosphate guanyltransferase\tK16881 K16881; mannose-1-phosphate guanylyltransferase \/ phosphomannomutase [EC:2.7.7.13 5.4.2.8]" }, { "name":"DDW44_10230 GDP-mannose pyrophosphorylase\tK00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]" }, { "name":"DDW44_27920 rfbA; glucose-1-phosphate thymidylyltransferase\tK00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]" } ] }, { "name":"00541 Biosynthesis of various nucleotide sugars [PATH:stir00541]", "children":[ { "name":"DDW44_12055 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase\/glucosamine-1-phosphate N-acetyltransferase GlmU\tK04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase \/ glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]" }, { "name":"DDW44_18335 nucleotide sugar dehydrogenase\tK13015 wbpA; UDP-N-acetyl-D-glucosamine dehydrogenase [EC:1.1.1.136]" }, { "name":"DDW44_08265 N-acetyltransferase\tK13018 wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-glucuronate N-acetyltransferase [EC:2.3.1.201]" }, { "name":"DDW44_18845 N-acetylneuraminate synthase\tK01654 neuB; N-acetylneuraminate synthase [EC:2.5.1.56]" }, { "name":"DDW44_08275 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)\tK01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]" }, { "name":"DDW44_12425 galU; UTP--glucose-1-phosphate uridylyltransferase\tK00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]" }, { "name":"DDW44_10305 UDP-glucose\/GDP-mannose dehydrogenase family protein\tK00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]" }, { "name":"DDW44_27920 rfbA; glucose-1-phosphate thymidylyltransferase\tK00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]" }, { "name":"DDW44_27750 rfbB; dTDP-glucose 4,6-dehydratase\tK01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]" }, { "name":"DDW44_10230 GDP-mannose pyrophosphorylase\tK00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]" }, { "name":"DDW44_10925 mannose-1-phosphate guanyltransferase\tK16881 K16881; mannose-1-phosphate guanylyltransferase \/ phosphomannomutase [EC:2.7.7.13 5.4.2.8]" }, { "name":"DDW44_25820 gmd; GDP-mannose 4,6-dehydratase\tK01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]" }, { "name":"DDW44_25810 GDP-fucose synthetase\tK02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]" } ] }, { "name":"00510 N-Glycan biosynthesis" }, { "name":"00513 Various types of N-glycan biosynthesis" }, { "name":"00512 Mucin type O-glycan biosynthesis" }, { "name":"00515 Mannose type O-glycan biosynthesis [PATH:stir00515]", "children":[ { "name":"DDW44_12200 phospholipid carrier-dependent glycosyltransferase\tK00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]" } ] }, { "name":"00514 Other types of O-glycan biosynthesis [PATH:stir00514]", "children":[ { "name":"DDW44_12200 phospholipid carrier-dependent glycosyltransferase\tK00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]" } ] }, { "name":"00532 Glycosaminoglycan biosynthesis - chondroitin sulfate \/ dermatan sulfate" }, { "name":"00534 Glycosaminoglycan biosynthesis - heparan sulfate \/ heparin" }, { "name":"00533 Glycosaminoglycan biosynthesis - keratan sulfate" }, { "name":"00531 Glycosaminoglycan degradation" }, { "name":"00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis" }, { "name":"00601 Glycosphingolipid biosynthesis - lacto and neolacto series" }, { "name":"00603 Glycosphingolipid biosynthesis - globo and isoglobo series" }, { "name":"00604 Glycosphingolipid biosynthesis - ganglio series" }, { "name":"00511 Other glycan degradation [PATH:stir00511]", "children":[ { "name":"DDW44_18750 beta-N-acetylglucosaminidase\tK12373 HEXA_B; hexosaminidase [EC:3.2.1.52]" }, { "name":"DDW44_01195 alpha-mannosidase\tK01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24]" }, { "name":"DDW44_26930 alpha-mannosidase\tK01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24]" } ] }, { "name":"00540 Lipopolysaccharide biosynthesis" }, { "name":"00542 O-Antigen repeat unit biosynthesis [PATH:stir00542]", "children":[ { "name":"DDW44_21015 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase\tK02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate\/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]" } ] }, { "name":"00550 Peptidoglycan biosynthesis [PATH:stir00550]", "children":[ { "name":"DDW44_09760 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase\tK00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]" }, { "name":"DDW44_24220 UDP-N-acetylglucosamine 1-carboxyvinyltransferase\tK00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]" }, { "name":"DDW44_17880 UDP-N-acetylenolpyruvoylglucosamine reductase\tK00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]" }, { "name":"DDW44_24540 UDP-N-acetylmuramate--L-alanine ligase\tK01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]" }, { "name":"DDW44_03690 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase\tK01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]" }, { "name":"DDW44_03705 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase\tK01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]" }, { "name":"DDW44_22040 D-alanine--D-alanine ligase A\tK01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]" }, { "name":"DDW44_03700 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase\tK01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]" }, { "name":"DDW44_07930 isoprenyl transferase\tK00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]" }, { "name":"DDW44_10720 undecaprenyl-diphosphate phosphatase\tK06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]" }, { "name":"DDW44_06650 hypothetical protein\tK19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]" }, { "name":"DDW44_03695 phospho-N-acetylmuramoyl-pentapeptide-transferase\tK01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]" }, { "name":"DDW44_03680 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase\tK02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]" }, { "name":"DDW44_19595 penicillin-binding protein\tK05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]" }, { "name":"DDW44_03685 ftsW; putative lipid II flippase FtsW\tK03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"DDW44_15305 cell division protein FtsW\tK03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"DDW44_20795 cell division protein FtsW\tK03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"DDW44_08335 rod shape-determining protein RodA\tK05837 rodA; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"DDW44_08340 mrdA; penicillin-binding protein 2\tK05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]" }, { "name":"DDW44_03710 cell division protein\tK03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]" }, { "name":"DDW44_02745 penicillin-binding protein\tK05364 pbpA; penicillin-binding protein A" }, { "name":"DDW44_15300 penicillin-binding protein\tK05364 pbpA; penicillin-binding protein A" }, { "name":"DDW44_20790 penicillin-binding protein\tK05364 pbpA; penicillin-binding protein A" }, { "name":"DDW44_23135 penicillin-binding protein\tK05364 pbpA; penicillin-binding protein A" }, { "name":"DDW44_12865 hypothetical protein\tK07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5\/6) [EC:3.4.16.4]" }, { "name":"DDW44_15520 D-alanyl-D-alanine carboxypeptidase\tK07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5\/6) [EC:3.4.16.4]" }, { "name":"DDW44_18670 D-alanyl-D-alanine carboxypeptidase\tK07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5\/6) [EC:3.4.16.4]" }, { "name":"DDW44_23085 penicillin-binding protein\tK07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5\/6) [EC:3.4.16.4]" }, { "name":"DDW44_16750 dacB; D-alanyl-D-alanine carboxypeptidase\/D-alanyl-D-alanine-endopeptidase\tK07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase\/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]" }, { "name":"DDW44_16950 dacB; D-alanyl-D-alanine carboxypeptidase\/D-alanyl-D-alanine-endopeptidase\tK07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase\/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]" }, { "name":"DDW44_01685 DUF1727 domain-containing protein\tK23393 murT; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]" }, { "name":"DDW44_01690 glutamine amidotransferase\tK07009 gatD; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]" } ] }, { "name":"00552 Teichoic acid biosynthesis [PATH:stir00552]", "children":[ { "name":"DDW44_10720 undecaprenyl-diphosphate phosphatase\tK06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]" }, { "name":"DDW44_06650 hypothetical protein\tK19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]" }, { "name":"DDW44_21015 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase\tK02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate\/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]" }, { "name":"DDW44_25905 glycosyltransferase\tK05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187]" } ] }, { "name":"00571 Lipoarabinomannan (LAM) biosynthesis" }, { "name":"00572 Arabinogalactan biosynthesis - Mycobacterium", "children":[ { "name":"DDW44_21015 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase\tK02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate\/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]" } ] }, { "name":"00543 Exopolysaccharide biosynthesis [PATH:stir00543]", "children":[ { "name":"DDW44_21015 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase\tK02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate\/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]" }, { "name":"DDW44_31170 serine acetyltransferase\tK00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]" } ] } ] }, { "name":"09108 Metabolism of cofactors and vitamins", "children":[ { "name":"00730 Thiamine metabolism [PATH:stir00730]", "children":[ { "name":"DDW44_14835 phosphomethylpyrimidine synthase ThiC\tK03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]" }, { "name":"DDW44_22060 thiD; bifunctional hydroxymethylpyrimidine kinase\/phosphomethylpyrimidine kinase\tK00941 thiD; hydroxymethylpyrimidine\/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]" }, { "name":"DDW44_04085 cysteine desulfurase\tK04487 iscS; cysteine desulfurase [EC:2.8.1.7]" }, { "name":"DDW44_21525 cysteine desulfurase\tK04487 iscS; cysteine desulfurase [EC:2.8.1.7]" }, { "name":"DDW44_03855 thiO; glycine oxidase ThiO\tK03153 thiO; glycine oxidase [EC:1.4.3.19]" }, { "name":"DDW44_15200 FAD-dependent oxidoreductase\tK03153 thiO; glycine oxidase [EC:1.4.3.19]" }, { "name":"DDW44_24410 dxs; 1-deoxy-D-xylulose-5-phosphate synthase\tK01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]" }, { "name":"DDW44_03865 thiazole synthase\tK03149 thiG; thiazole synthase [EC:2.8.1.10]" }, { "name":"DDW44_03825 thiamine phosphate synthase\tK00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]" }, { "name":"DDW44_22055 thiamine-phosphate kinase\tK00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]" }, { "name":"DDW44_20375 rsgA; ribosome small subunit-dependent GTPase A\tK06949 rsgA; ribosome biogenesis GTPase \/ thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]" }, { "name":"DDW44_24875 rsgA; ribosome small subunit-dependent GTPase A\tK06949 rsgA; ribosome biogenesis GTPase \/ thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]" }, { "name":"DDW44_18105 adenylate kinase\tK00939 adk; adenylate kinase [EC:2.7.4.3]" } ] }, { "name":"00740 Riboflavin metabolism [PATH:stir00740]", "children":[ { "name":"DDW44_05185 ribA; GTP cyclohydrolase II\tK01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]" }, { "name":"DDW44_11230 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase\/GTP cyclohydrolase II\tK14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase \/ GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]" }, { "name":"DDW44_05195 deaminase\tK11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase \/ 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]" }, { "name":"DDW44_11245 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase\/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD\tK11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase \/ 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]" }, { "name":"DDW44_11225 6,7-dimethyl-8-ribityllumazine synthase\tK00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]" }, { "name":"DDW44_11240 riboflavin synthase\tK00793 ribE; riboflavin synthase [EC:2.5.1.9]" }, { "name":"DDW44_22795 bifunctional riboflavin kinase\/FAD synthetase\tK11753 ribF; riboflavin kinase \/ FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]" }, { "name":"DDW44_17360 aromatic acid decarboxylase\tK03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]" } ] }, { "name":"00750 Vitamin B6 metabolism [PATH:stir00750]", "children":[ { "name":"DDW44_13140 oxidase\tK00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]" }, { "name":"DDW44_13415 pdxH; pyridoxamine 5'-phosphate oxidase\tK00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]" }, { "name":"DDW44_27925 oxidoreductase\tK05275 E1.1.1.65; pyridoxine 4-dehydrogenase [EC:1.1.1.65]" }, { "name":"DDW44_13505 serC; phosphoserine transaminase\tK00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]" }, { "name":"DDW44_13780 threonine synthase\tK01733 thrC; threonine synthase [EC:4.2.3.1]" }, { "name":"DDW44_19775 threonine synthase\tK01733 thrC; threonine synthase [EC:4.2.3.1]" }, { "name":"DDW44_20960 threonine synthase\tK01733 thrC; threonine synthase [EC:4.2.3.1]" }, { "name":"DDW44_11600 pyridoxal 5'-phosphate synthase lyase subunit PdxS\tK06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]" }, { "name":"DDW44_11595 pdxT; pyridoxal 5'-phosphate synthase glutaminase subunit PdxT\tK08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6]" } ] }, { "name":"00760 Nicotinate and nicotinamide metabolism [PATH:stir00760]", "children":[ { "name":"DDW44_16895 L-aspartate oxidase\tK00278 nadB; L-aspartate oxidase [EC:1.4.3.16]" }, { "name":"DDW44_04115 quinolinate synthase NadA\tK03517 nadA; quinolinate synthase [EC:2.5.1.72]" }, { "name":"DDW44_16900 carboxylating nicotinate-nucleotide diphosphorylase\tK00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]" }, { "name":"DDW44_00695 nicotinate phosphoribosyltransferase\tK00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]" }, { "name":"DDW44_09610 nicotinate phosphoribosyltransferase\tK00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]" }, { "name":"DDW44_19010 purine-nucleoside phosphorylase\tK03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]" }, { "name":"DDW44_07220 transcriptional regulator\tK06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]" }, { "name":"DDW44_06580 bifunctional metallophosphatase\/5'-nucleotidase\tK01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]" }, { "name":"DDW44_09365 HAD family hydrolase\tK02566 nagD; 5'-nucleotidase [EC:3.1.3.5]" }, { "name":"DDW44_08200 nicotinate-nucleotide adenylyltransferase\tK00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]" }, { "name":"DDW44_20210 NAD(+) diphosphatase\tK03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]" }, { "name":"DDW44_17825 NAD(+) synthase\tK01916 nadE; NAD+ synthase [EC:6.3.1.5]" }, { "name":"DDW44_04500 NAD+ synthase\tK01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]" }, { "name":"DDW44_23010 damage-inducible protein CinA\tK03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]" }, { "name":"DDW44_09615 nicotinamidase\tK08281 pncA; nicotinamidase\/pyrazinamidase [EC:3.5.1.19 3.5.1.-]" }, { "name":"DDW44_26280 NAD-dependent deacetylase\tK12410 cobB; NAD-dependent protein deacetylase\/lipoamidase [EC:2.3.1.286 2.3.1.313]" }, { "name":"DDW44_07305 NAD kinase\tK00858 ppnK; NAD+ kinase [EC:2.7.1.23]" }, { "name":"DDW44_09195 decarboxylase\tK01799 nicE; maleate isomerase [EC:5.2.1.1]" }, { "name":"DDW44_15860 NADP-dependent succinic semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"DDW44_18360 gabD2; succinic semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" } ] }, { "name":"00770 Pantothenate and CoA biosynthesis [PATH:stir00770]", "children":[ { "name":"DDW44_08855 acetolactate synthase\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"DDW44_21630 acetolactate synthase large subunit\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"DDW44_31140 hypothetical protein\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"DDW44_21635 acetolactate synthase small subunit\tK01653 E2.2.1.6S; acetolactate synthase I\/III small subunit [EC:2.2.1.6]" }, { "name":"DDW44_21640 ketol-acid reductoisomerase\tK00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]" }, { "name":"DDW44_17030 dihydroxy-acid dehydratase\tK01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]" }, { "name":"DDW44_04520 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase\tK00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]" }, { "name":"DDW44_16890 pantoate--beta-alanine ligase\tK01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]" }, { "name":"DDW44_18200 type I pantothenate kinase\tK00867 coaA; type I pantothenate kinase [EC:2.7.1.33]" }, { "name":"DDW44_16905 type III pantothenate kinase\tK03525 coaX; type III pantothenate kinase [EC:2.7.1.33]" }, { "name":"DDW44_11370 coaBC; bifunctional phosphopantothenoylcysteine decarboxylase\/phosphopantothenate--cysteine ligase CoaBC\tK13038 coaBC; phosphopantothenoylcysteine decarboxylase \/ phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]" }, { "name":"DDW44_22085 pantetheine-phosphate adenylyltransferase\tK00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]" }, { "name":"DDW44_03135 dephospho-CoA kinase\tK00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]" }, { "name":"DDW44_18215 holo-ACP synthase\tK00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]" }, { "name":"DDW44_27640 4'-phosphopantetheinyl transferase\tK02362 entD; enterobactin synthetase component D \/ holo-[acyl-carrier protein] synthase [EC:6.3.2.14 2.7.8.7]" }, { "name":"DDW44_27645 metallophosphoesterase\tK28885 pptH; [acyl-carrier-protein] phosphodiesterase [EC:3.1.4.14]" }, { "name":"DDW44_01770 4-amino-4-deoxychorismate lyase\tK00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]" }, { "name":"DDW44_21835 branched-chain amino acid aminotransferase\tK00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]" }, { "name":"DDW44_26210 hydA; dihydropyrimidinase\tK01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]" }, { "name":"DDW44_21730 carbon-nitrogen hydrolase family protein\tK01431 UPB1; beta-ureidopropionase [EC:3.5.1.6]" }, { "name":"DDW44_26200 acyltransferase\tK01431 UPB1; beta-ureidopropionase [EC:3.5.1.6]" }, { "name":"DDW44_11735 allantoate amidohydrolase\tK06016 pydC; beta-ureidopropionase \/ N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]" }, { "name":"DDW44_28245 aspartate 1-decarboxylase\tK01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]" }, { "name":"DDW44_21740 mfnA; tyrosine decarboxylase MfnA\tK18933 mfnA; tyrosine decarboxylase \/ aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11]" }, { "name":"DDW44_02590 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_04850 aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_12765 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_16710 aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_18985 betaine-aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_31145 hypothetical protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" } ] }, { "name":"00780 Biotin metabolism [PATH:stir00780]", "children":[ { "name":"DDW44_06095 fabF; beta-ketoacyl-[acyl-carrier-protein] synthase II\tK09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]" }, { "name":"DDW44_07505 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"DDW44_07630 KR domain-containing protein\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"DDW44_10785 3-oxoacyl-ACP reductase FabG\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"DDW44_10480 8-amino-7-oxononanoate synthase\tK00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]" }, { "name":"DDW44_10490 adenosylmethionine--8-amino-7-oxononanoate transaminase\tK00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]" }, { "name":"DDW44_10495 dethiobiotin synthase\tK01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]" }, { "name":"DDW44_10485 biotin synthase BioB\tK01012 bioB; biotin synthase [EC:2.8.1.6]" }, { "name":"DDW44_19060 biotin--[acetyl-CoA-carboxylase] ligase\tK03524 birA; BirA family transcriptional regulator, biotin operon repressor \/ biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]" } ] }, { "name":"00785 Lipoic acid metabolism [PATH:stir00785]", "children":[ { "name":"DDW44_04270 lipoyl(octanoyl) transferase LipB\tK03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]" }, { "name":"DDW44_04275 lipA; lipoyl synthase\tK03644 lipA; lipoyl synthase [EC:2.8.1.8]" }, { "name":"DDW44_04205 lpdA; dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" }, { "name":"DDW44_04225 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type\tK00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]" }, { "name":"DDW44_06000 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type\tK00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]" }, { "name":"DDW44_20685 kgd; multifunctional oxoglutarate decarboxylase\/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit\/dihydrolipoyllysine-residue succinyltransferase subunit\tK01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]" }, { "name":"DDW44_15425 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha\tK00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]" }, { "name":"DDW44_15505 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha\tK00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]" }, { "name":"DDW44_15430 alpha-ketoacid dehydrogenase subunit beta\tK00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]" }, { "name":"DDW44_15510 alpha-ketoacid dehydrogenase subunit beta\tK00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]" }, { "name":"DDW44_15435 branched-chain alpha-keto acid dehydrogenase subunit E2\tK09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]" }, { "name":"DDW44_15515 branched-chain alpha-keto acid dehydrogenase subunit E2\tK09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]" }, { "name":"DDW44_10875 gcvP; glycine dehydrogenase (aminomethyl-transferring)\tK00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]" }, { "name":"DDW44_21455 gcvT; glycine cleavage system aminomethyltransferase GcvT\tK00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]" }, { "name":"DDW44_21450 gcvH; glycine cleavage system protein GcvH\tK02437 gcvH; glycine cleavage system H protein" } ] }, { "name":"00790 Folate biosynthesis [PATH:stir00790]", "children":[ { "name":"DDW44_16780 folE; GTP cyclohydrolase I FolE\tK01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]" }, { "name":"DDW44_03585 alkaline phosphatase\tK01113 phoD; alkaline phosphatase D [EC:3.1.3.1]" }, { "name":"DDW44_04605 alkaline phosphatase\tK01113 phoD; alkaline phosphatase D [EC:3.1.3.1]" }, { "name":"DDW44_05575 alkaline phosphatase\tK01113 phoD; alkaline phosphatase D [EC:3.1.3.1]" }, { "name":"DDW44_10575 alkaline phosphatase\tK01113 phoD; alkaline phosphatase D [EC:3.1.3.1]" }, { "name":"DDW44_16795 folB; dihydroneopterin aldolase\tK01633 folB; 7,8-dihydroneopterin aldolase\/epimerase\/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]" }, { "name":"DDW44_16790 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase\tK00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]" }, { "name":"DDW44_16805 folP; dihydropteroate synthase\tK00796 folP; dihydropteroate synthase [EC:2.5.1.15]" }, { "name":"DDW44_08370 dihydrofolate synthase\tK11754 folC; dihydrofolate synthase \/ folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]" }, { "name":"DDW44_05185 ribA; GTP cyclohydrolase II\tK01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]" }, { "name":"DDW44_11230 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase\/GTP cyclohydrolase II\tK14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase \/ GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]" }, { "name":"DDW44_15280 aminodeoxychorismate\/anthranilate synthase component II\tK01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]" }, { "name":"DDW44_01775 chloride transporter\tK01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]" }, { "name":"DDW44_26525 4a-hydroxytetrahydrobiopterin dehydratase\tK01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]" }, { "name":"DDW44_07560 GTP 3',8-cyclase MoaA\tK03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]" }, { "name":"DDW44_12415 moaC; cyclic pyranopterin monophosphate synthase MoaC\tK03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]" }, { "name":"DDW44_20290 molybdenum cofactor biosynthesis protein MoaE\tK03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]" }, { "name":"DDW44_12420 molybdopterin molybdenumtransferase MoeA\tK03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]" }, { "name":"DDW44_15445 molybdopterin molybdenumtransferase MoeA\tK03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]" } ] }, { "name":"00670 One carbon pool by folate [PATH:stir00670]", "children":[ { "name":"DDW44_18545 bifunctional methylenetetrahydrofolate dehydrogenase\/methenyltetrahydrofolate cyclohydrolase\tK01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) \/ methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]" }, { "name":"DDW44_18625 glyA; serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"DDW44_21010 serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"DDW44_21445 serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"DDW44_00210 hypothetical protein\tK11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]" }, { "name":"DDW44_18530 phosphoribosylglycinamide formyltransferase\tK11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]" }, { "name":"DDW44_18535 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase\/IMP cyclohydrolase PurH\tK00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase \/ IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]" }, { "name":"DDW44_21455 gcvT; glycine cleavage system aminomethyltransferase GcvT\tK00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]" }, { "name":"DDW44_02315 metH; methionine synthase\tK00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]" }, { "name":"DDW44_22950 thymidylate synthase (FAD)\tK03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]" }, { "name":"DDW44_13335 purU; formyltetrahydrofolate deformylase\tK01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]" }, { "name":"DDW44_03820 metF; methylenetetrahydrofolate reductase [NAD(P)H]\tK00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]" }, { "name":"DDW44_12430 5-formyltetrahydrofolate cyclo-ligase\tK01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]" }, { "name":"DDW44_24095 homocysteine S-methyltransferase\tK00547 mmuM; homocysteine S-methyltransferase [EC:2.1.1.10]" }, { "name":"DDW44_11365 methionine adenosyltransferase\tK00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]" }, { "name":"DDW44_31075 methionine adenosyltransferase\tK00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]" }, { "name":"DDW44_10155 adenosylhomocysteinase\tK01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]" }, { "name":"DDW44_10875 gcvP; glycine dehydrogenase (aminomethyl-transferring)\tK00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]" }, { "name":"DDW44_04205 lpdA; dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" }, { "name":"DDW44_21450 gcvH; glycine cleavage system protein GcvH\tK02437 gcvH; glycine cleavage system H protein" }, { "name":"DDW44_01370 FAD-binding protein\tK17755 codA; choline oxidase [EC:1.1.3.17]" }, { "name":"DDW44_00220 gamma-aminobutyraldehyde dehydrogenase\tK00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]" }, { "name":"DDW44_01365 betaine-aldehyde dehydrogenase\tK00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]" }, { "name":"DDW44_18570 betaine-aldehyde dehydrogenase\tK00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]" }, { "name":"DDW44_22355 gamma-aminobutyraldehyde dehydrogenase\tK00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]" }, { "name":"DDW44_22385 gamma-aminobutyraldehyde dehydrogenase\tK00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]" }, { "name":"DDW44_11790 cystathionine beta-synthase\tK01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]" }, { "name":"DDW44_23840 cysteine synthase\tK01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]" }, { "name":"DDW44_29235 cysteine synthase\tK01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]" }, { "name":"DDW44_14875 cystathionine gamma-lyase\tK01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]" } ] }, { "name":"00830 Retinol metabolism" }, { "name":"00860 Porphyrin metabolism [PATH:stir00860]", "children":[ { "name":"DDW44_21950 glutamate--tRNA ligase\tK01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]" }, { "name":"DDW44_17170 glutamyl-tRNA reductase\tK02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]" }, { "name":"DDW44_17290 hemL; glutamate-1-semialdehyde-2,1-aminomutase\tK01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]" }, { "name":"DDW44_17185 porphobilinogen synthase\tK01698 hemB; porphobilinogen synthase [EC:4.2.1.24]" }, { "name":"DDW44_17175 hydroxymethylbilane synthase\tK01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]" }, { "name":"DDW44_09795 uroporphyrinogen-III synthase\tK01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]" }, { "name":"DDW44_24455 uroporphyrinogen decarboxylase\tK01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]" }, { "name":"DDW44_27305 coproporphyrinogen III oxidase family protein\tK02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]" }, { "name":"DDW44_24470 hemG; protoporphyrinogen oxidase\tK00231 PPOX; protoporphyrinogen\/coproporphyrinogen III oxidase [EC:1.3.3.4 1.3.3.15]" }, { "name":"DDW44_23580 ferrochelatase\tK01772 hemH; protoporphyrin\/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]" }, { "name":"DDW44_24475 hypothetical protein\tK00435 hemQ; hydrogen peroxide-dependent heme synthase [EC:1.3.98.5]" }, { "name":"DDW44_17180 bifunctional uroporphyrinogen-III C-methyltransferase\/uroporphyrinogen-III synthase\tK13542 cobA-hemD; uroporphyrinogen III methyltransferase \/ synthase [EC:2.1.1.107 4.2.1.75]" }, { "name":"DDW44_01840 cobA; uroporphyrinogen-III C-methyltransferase\tK02302 cysG; uroporphyrin-III C-methyltransferase \/ precorrin-2 dehydrogenase \/ sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]" }, { "name":"DDW44_02870 protoheme IX farnesyltransferase\tK02257 COX10; heme o synthase [EC:2.5.1.141]" }, { "name":"DDW44_02855 cytochrome B\tK02259 COX15; heme a synthase [EC:1.17.99.9]" }, { "name":"DDW44_02680 hypothetical protein\tK03795 cbiX; sirohydrochlorin cobaltochelatase [EC:4.99.1.3]" }, { "name":"DDW44_05000 precorrin-3B C(17)-methyltransferase\tK13540 cobIJ; precorrin-2 C20-methyltransferase \/ precorrin-3B C17-methyltransferase [EC:2.1.1.130 2.1.1.131]" }, { "name":"DDW44_05010 hypothetical protein\tK02229 cobG; precorrin-3B synthase [EC:1.14.13.83]" }, { "name":"DDW44_04990 cobM; precorrin-4 C(11)-methyltransferase\tK05936 cobM; precorrin-4\/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271]" }, { "name":"DDW44_04995 cobalt-precorrin-6A reductase\tK05895 cobK-cbiJ; precorrin-6A\/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106]" }, { "name":"DDW44_01850 cbiE; precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE\tK00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase \/ cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196]" }, { "name":"DDW44_04985 cobalamin biosynthesis bifunctional protein CbiET\tK00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase \/ cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196]" }, { "name":"DDW44_05005 precorrin-8X methylmutase\tK06042 cobH-cbiC; precorrin-8X\/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60]" }, { "name":"DDW44_02675 cobyrinate a,c-diamide synthase\tK02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]" }, { "name":"DDW44_05015 cobaltochelatase subunit CobN\tK02230 cobN; cobaltochelatase CobN [EC:6.6.1.2]" }, { "name":"DDW44_21100 cob(I)yrinic acid a,c-diamide adenosyltransferase\tK00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]" }, { "name":"DDW44_02670 cobO; cob(I)yrinic acid a,c-diamide adenosyltransferase\tK19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]" }, { "name":"DDW44_02660 cobyric acid synthase\tK02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]" }, { "name":"DDW44_04165 adenosylcobinamide kinase\/adenosylcobinamide phosphate guanyltransferase\tK02231 cobP; adenosylcobinamide kinase \/ adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]" }, { "name":"DDW44_04185 adenosylcobinamide-GDP ribazoletransferase\tK02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]" }, { "name":"DDW44_01845 5,6-dimethylbenzimidazole synthase\tK00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]" }, { "name":"DDW44_04170 cobT; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase\tK00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]" }, { "name":"DDW44_04700 bifunctional RNase H\/acid phosphatase\tK22316 rhnA-cobC; ribonuclease H \/ adenosylcobalamin\/alpha-ribazole phosphatase [EC:3.1.26.4 3.1.3.73]" }, { "name":"DDW44_02665 putative cobaltochelatase\tK03404 chlD; magnesium chelatase subunit D [EC:6.6.1.1]" }, { "name":"DDW44_04565 biliverdin-producing heme oxygenase\tK21480 HO; heme oxygenase (biliverdin-producing, ferredoxin) [EC:1.14.15.20]" }, { "name":"DDW44_05355 nitrilase\tK23825 K23825; F420H(2)-dependent biliverdin reductase [EC:1.3.98.-]" }, { "name":"DDW44_03885 bfr; bacterioferritin\tK03594 bfr; bacterioferritin [EC:1.16.3.1]" }, { "name":"DDW44_04495 copper oxidase\tK22552 mmcO; multicopper oxidase [EC:1.16.3.1]" } ] }, { "name":"00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:stir00130]", "children":[ { "name":"DDW44_31235 reactive intermediate\/imine deaminase\tK18240 xanB2; chorismate lyase \/ 3-hydroxybenzoate synthase [EC:4.1.3.40 4.1.3.45]" }, { "name":"DDW44_17345 4-hydroxybenzoate octaprenyltransferase\tK03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]" }, { "name":"DDW44_17340 menaquinone biosynthesis decarboxylase\tK03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]" }, { "name":"DDW44_17360 aromatic acid decarboxylase\tK03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]" }, { "name":"DDW44_17425 demethylmenaquinone methyltransferase\tK03183 ubiE; demethylmenaquinone methyltransferase \/ 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]" }, { "name":"DDW44_06255 menC; o-succinylbenzoate synthase\tK02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]" }, { "name":"DDW44_17410 menaquinone biosynthesis protein\tK11782 mqnA; chorismate dehydratase [EC:4.2.1.151]" }, { "name":"DDW44_17370 aminofutalosine synthase MqnE\tK18285 mqnE; aminodeoxyfutalosine synthase [EC:2.5.1.120]" }, { "name":"DDW44_22370 adenosine deaminase\tK18286 add; aminodeoxyfutalosine deaminase [EC:3.5.4.40]" }, { "name":"DDW44_13610 futalosine hydrolase\tK11783 mqnB; futalosine hydrolase [EC:3.2.2.26]" }, { "name":"DDW44_17415 mqnC; dehypoxanthine futalosine cyclase\tK11784 mqnC; cyclic dehypoxanthinyl futalosine synthase [EC:1.21.98.1]" }, { "name":"DDW44_13615 1,4-dihydroxy-6-naphthoate synthase\tK11785 mqnD; 5,8-dihydroxy-2-naphthoate synthase [EC:4.1.99.29]" }, { "name":"DDW44_06235 NADPH-dependent FMN reductase\tK03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]" }, { "name":"DDW44_09665 hppD; 4-hydroxyphenylpyruvate dioxygenase\tK00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]" } ] } ] }, { "name":"09109 Metabolism of terpenoids and polyketides", "children":[ { "name":"00900 Terpenoid backbone biosynthesis [PATH:stir00900]", "children":[ { "name":"DDW44_24410 dxs; 1-deoxy-D-xylulose-5-phosphate synthase\tK01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]" }, { "name":"DDW44_22710 1-deoxy-D-xylulose-5-phosphate reductoisomerase\tK00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]" }, { "name":"DDW44_14085 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase\tK00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]" }, { "name":"DDW44_12170 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase\tK00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]" }, { "name":"DDW44_14080 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase\tK01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]" }, { "name":"DDW44_22720 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase\tK03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]" }, { "name":"DDW44_19660 4-hydroxy-3-methylbut-2-enyl diphosphate reductase\tK03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]" }, { "name":"DDW44_11800 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_12820 acetyl-CoA C-acyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_21175 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_27075 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_29685 thiolase domain-containing protein\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_17360 aromatic acid decarboxylase\tK03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]" }, { "name":"DDW44_27180 isopentenyl-diphosphate Delta-isomerase\tK01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]" }, { "name":"DDW44_20550 polyprenyl synthetase\tK13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]" }, { "name":"DDW44_25165 polyprenyl diphosphate synthase\tK13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]" }, { "name":"DDW44_27255 dimethylallyltranstransferase\tK13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]" }, { "name":"DDW44_19550 isoprenyl transferase\tK12503 uppS; short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68]" }, { "name":"DDW44_07930 isoprenyl transferase\tK00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]" } ] }, { "name":"00902 Monoterpenoid biosynthesis" }, { "name":"00909 Sesquiterpenoid and triterpenoid biosynthesis [PATH:stir00909]", "children":[ { "name":"DDW44_29705 Geosmin synthase\tK10187 cyc2; germacradienol\/geosmin synthase [EC:4.2.3.22 4.2.3.75 4.1.99.16]" }, { "name":"DDW44_27260 shc; squalene--hopene cyclase\tK06045 shc; squalene-hopene\/tetraprenyl-beta-curcumene cyclase [EC:5.4.99.17 4.2.1.129]" } ] }, { "name":"00904 Diterpenoid biosynthesis" }, { "name":"00906 Carotenoid biosynthesis [PATH:stir00906]", "children":[ { "name":"DDW44_25175 phytoene synthase\tK02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]" }, { "name":"DDW44_27245 hpnD; squalene synthase HpnD\tK02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]" }, { "name":"DDW44_25170 phytoene desaturase\tK10027 crtI; phytoene desaturase [EC:1.3.99.26 1.3.99.28 1.3.99.29 1.3.99.31]" }, { "name":"DDW44_25195 lycopene cyclase\tK06443 lcyB; lycopene beta-cyclase [EC:5.5.1.19]" }, { "name":"DDW44_25185 isorenieratene synthase\tK09879 crtU; carotenoid phi-ring synthase \/ carotenoid chi-ring synthase [EC:1.3.99.39 1.3.99.40]" } ] }, { "name":"00905 Brassinosteroid biosynthesis" }, { "name":"00981 Insect hormone biosynthesis" }, { "name":"00908 Zeatin biosynthesis" }, { "name":"00903 Limonene degradation", "children":[ { "name":"DDW44_02590 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_04850 aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_12765 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_16710 aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_18985 betaine-aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_31145 hypothetical protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" } ] }, { "name":"00907 Pinene, camphor and geraniol degradation [PATH:stir00907]", "children":[ { "name":"DDW44_21415 enoyl-CoA hydratase\tK01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]" }, { "name":"DDW44_27080 3-hydroxyacyl-CoA dehydrogenase\tK01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase \/ enoyl-CoA hydratase \/ 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]" }, { "name":"DDW44_08975 hydroxymethylglutaryl-CoA lyase\tK01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]" }, { "name":"DDW44_03340 acetyl-CoA C-acetyltransferase\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"DDW44_04745 Nonspecific lipid-transfer protein\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"DDW44_05610 steroid 3-ketoacyl-CoA thiolase\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"DDW44_24435 acetyl-CoA C-acyltransferase\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" } ] }, { "name":"01052 Type I polyketide structures" }, { "name":"00522 Biosynthesis of 12-, 14- and 16-membered macrolides" }, { "name":"01051 Biosynthesis of ansamycins", "children":[ { "name":"DDW44_02875 transketolase\tK00615 E2.2.1.1; transketolase [EC:2.2.1.1]" }, { "name":"DDW44_24665 tkt; transketolase\tK00615 E2.2.1.1; transketolase [EC:2.2.1.1]" }, { "name":"DDW44_27470 transketolase\tK00615 E2.2.1.1; transketolase [EC:2.2.1.1]" }, { "name":"DDW44_29365 transketolase\tK00615 E2.2.1.1; transketolase [EC:2.2.1.1]" } ] }, { "name":"01059 Biosynthesis of enediyne antibiotics [PATH:stir01059]", "children":[ { "name":"DDW44_31470 erythronolide synthase\tK15314 sgcE; enediyne polyketide synthase" }, { "name":"DDW44_31465 acyl-CoA thioesterase\tK15315 sgcE10; enediyne core biosynthesis thioesterase" }, { "name":"DDW44_03130 hydrolase\tK21159 sgcF; epoxide hydrolase" }, { "name":"DDW44_31270 epoxide hydrolase\tK21159 sgcF; epoxide hydrolase" }, { "name":"DDW44_31490 enediyne biosynthesis protein\tK21160 sgcE2; enediyne biosynthesis protein E2" }, { "name":"DDW44_31485 DUF1702 domain-containing protein\tK21161 sgcE3; enediyne biosynthesis protein E3" }, { "name":"DDW44_31480 RNA-binding protein\tK21162 sgcE4; enediyne biosynthesis protein E4" }, { "name":"DDW44_31475 enediyne biosynthesis protein\tK21163 sgcE5; enediyne biosynthesis protein E5" }, { "name":"DDW44_31455 cytochrome P450\tK21164 sgcE7; enediyne biosynthesis protein E7" }, { "name":"DDW44_31440 regulator\tK21165 sgcE8; enediyne biosynthesis protein E8" }, { "name":"DDW44_31435 GMC family oxidoreductase\tK21166 sgcE9; enediyne biosynthesis protein E9" }, { "name":"DDW44_31425 TIGR03084 family protein\tK21167 sgcE11; enediyne biosynthesis protein E11" }, { "name":"DDW44_31315 aminodeoxychorismate synthase component I\tK20159 sgcD; 2-amino-4-deoxychorismate synthase [EC:2.6.1.86]" }, { "name":"DDW44_31310 aminodeoxychorismate\/anthranilate synthase component II\tK21175 sgcD1; 2-amino-4-deoxychorismate synthase, glutamine amidotransferase component [EC:2.6.1.86]" }, { "name":"DDW44_31325 flavodoxin family protein\tK20156 sgcG; 2-amino-4-deoxychorismate dehydrogenase [EC:1.3.8.16]" }, { "name":"DDW44_31320 CoF synthetase\tK21176 sgcD5; benzoxazolinate moiety biosynthesis protein SgcD5" }, { "name":"DDW44_31330 cytochrome P450\tK21177 sgcD3; cytochrome P450 hydroxylase [EC:1.14.-.-]" }, { "name":"DDW44_31335 methyltransferase\tK21178 sgcD4; O-methyltransferase [EC:2.1.1.-]" }, { "name":"DDW44_31305 phenylacetate--CoA ligase family protein\tK21179 sgcH; CoA-ligase" }, { "name":"DDW44_31245 cmdF; tyrosine 2,3-aminomutase\tK21181 sgcC4; MIO-dependent L-tyrosine 2,3-aminomutase [EC:5.4.3.6]" }, { "name":"DDW44_31400 Pyoverdin chromophore biosynthetic protein pvcC\tK21184 sgcC; two-component FAD-dependent monooxygenase [EC:1.14.14.15 1.14.14.-]" }, { "name":"DDW44_24265 flavin reductase\tK21185 sgcE6; flavin reductase" }, { "name":"DDW44_31460 flavin reductase\tK21185 sgcE6; flavin reductase" }, { "name":"DDW44_31365 peptide synthase\tK21186 sgcC5; condensation enzyme" }, { "name":"DDW44_00810 cytochrome P450\tK20420 ncsB3; 2-hydroxy-5-methyl-1-naphthoate 7-hydroxylase [EC:1.14.15.31]" }, { "name":"DDW44_29175 cytochrome P450\tK20420 ncsB3; 2-hydroxy-5-methyl-1-naphthoate 7-hydroxylase [EC:1.14.15.31]" }, { "name":"DDW44_31375 cytochrome P450\tK20420 ncsB3; 2-hydroxy-5-methyl-1-naphthoate 7-hydroxylase [EC:1.14.15.31]" }, { "name":"DDW44_01140 nucleoside-diphosphate-sugar pyrophosphorylase\tK21210 ncsC; NDP-mannose synthase" }, { "name":"DDW44_01135 NAD-dependent dehydratase\tK21211 ncsC1; NDP-hexose 4,6-dehydratase" }, { "name":"DDW44_01145 NarL family transcriptional regulator\tK21214 ncsC4; NDP-hexose 4-ketoreductase" }, { "name":"DDW44_20155 reductase\tK21214 ncsC4; NDP-hexose 4-ketoreductase" }, { "name":"DDW44_27810 NAD-dependent epimerase\tK21214 ncsC4; NDP-hexose 4-ketoreductase" }, { "name":"DDW44_27895 methyltransferase\tK15958 rdmB; SAM-dependent hydroxylase" } ] }, { "name":"01056 Biosynthesis of type II polyketide backbone [PATH:stir01056]", "children":[ { "name":"DDW44_27780 beta-ketoacyl-[acyl-carrier-protein] synthase family protein\tK05551 actI1; minimal PKS ketosynthase (KS\/KS alpha) [EC:2.3.1.- 2.3.1.260 2.3.1.235]" }, { "name":"DDW44_27775 ketosynthase chain-length factor\tK05552 actI2; minimal PKS chain-length factor (CLF\/KS beta) [EC:2.3.1.- 2.3.1.260 2.3.1.235]" }, { "name":"DDW44_27915 acyl carrier protein\tK05553 actI3; minimal PKS acyl carrier protein" }, { "name":"DDW44_27855 3-oxoacyl-ACP reductase FabG\tK12420 actIII; ketoreductase [EC:1.1.1.-]" }, { "name":"DDW44_27850 actinorhodin polyketide synthase\tK05554 actVII; aromatase [EC:4.2.1.-]" } ] }, { "name":"01057 Biosynthesis of type II polyketide products [PATH:stir01057]", "children":[ { "name":"DDW44_27835 cyclase\tK14250 oxyN; cyclase" }, { "name":"DDW44_01285 methyltransferase\tK14251 oxyF; C-methyltransferase [EC:2.1.1.-]" }, { "name":"DDW44_27785 antibiotic biosynthesis monooxygenase\tK15941 snoaB; deoxynogalonate \/ 12-deoxyaklanonic acid monooxygenase [EC:1.13.12.22 1.13.12.-]" }, { "name":"DDW44_27905 methyltransferase\tK15942 snoaC; O-methyltransferase \/ aklanonic acid methyltransferase [EC:2.1.1.- 2.1.1.288]" }, { "name":"DDW44_27900 SnoaL\/DnrD family polyketide biosynthesis methyl ester cyclase\tK15943 snoaL; nogalonic acid methyl ester cyclase \/ aklanonic acid methyl ester cyclase [EC:5.5.1.26 5.5.1.23]" }, { "name":"DDW44_27845 KR domain-containing protein\tK15944 snoaF; nogalaviketone\/aklaviketone reductase [EC:1.1.1.- 1.1.1.362]" }, { "name":"DDW44_27880 FAD-dependent oxidoreductase\tK15950 dnrF; aklavinone 12-hydroxylase [EC:1.14.13.180]" }, { "name":"DDW44_27890 alpha\/beta hydrolase\tK15957 rdmC; aclacinomycin methylesterase [EC:3.1.1.95]" }, { "name":"DDW44_27895 methyltransferase\tK15958 rdmB; SAM-dependent hydroxylase" } ] }, { "name":"00253 Tetracycline biosynthesis [PATH:stir00253]", "children":[ { "name":"DDW44_27780 beta-ketoacyl-[acyl-carrier-protein] synthase family protein\tK05551 actI1; minimal PKS ketosynthase (KS\/KS alpha) [EC:2.3.1.- 2.3.1.260 2.3.1.235]" }, { "name":"DDW44_27775 ketosynthase chain-length factor\tK05552 actI2; minimal PKS chain-length factor (CLF\/KS beta) [EC:2.3.1.- 2.3.1.260 2.3.1.235]" }, { "name":"DDW44_27915 acyl carrier protein\tK05553 actI3; minimal PKS acyl carrier protein" }, { "name":"DDW44_27855 3-oxoacyl-ACP reductase FabG\tK12420 actIII; ketoreductase [EC:1.1.1.-]" }, { "name":"DDW44_27835 cyclase\tK14250 oxyN; cyclase" }, { "name":"DDW44_01285 methyltransferase\tK14251 oxyF; C-methyltransferase [EC:2.1.1.-]" } ] }, { "name":"00523 Polyketide sugar unit biosynthesis [PATH:stir00523]", "children":[ { "name":"DDW44_27920 rfbA; glucose-1-phosphate thymidylyltransferase\tK00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]" }, { "name":"DDW44_27750 rfbB; dTDP-glucose 4,6-dehydratase\tK01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]" }, { "name":"DDW44_27830 SAM-dependent methyltransferase\tK13311 desVI; dTDP-3-amino-3,4,6-trideoxy-alpha-D-glucopyranose N,N-dimethyltransferase [EC:2.1.1.234]" }, { "name":"DDW44_27885 SAM-dependent methyltransferase\tK13311 desVI; dTDP-3-amino-3,4,6-trideoxy-alpha-D-glucopyranose N,N-dimethyltransferase [EC:2.1.1.234]" }, { "name":"DDW44_27815 NDP-hexose 2,3-dehydratase\tK16435 evaA; dTDP-4-dehydro-6-deoxy-alpha-D-glucopyranose 2,3-dehydratase [EC:4.2.1.159]" }, { "name":"DDW44_27805 dTDP-4-keto-6-deoxy-D-glucose epimerase\tK16438 evaD; 5-epimerase [EC:5.1.3.-]" }, { "name":"DDW44_27875 oxidoreductase\tK13327 spnN; dTDP-3,4-didehydro-2,6-dideoxy-alpha-D-glucose 3-reductase [EC:1.1.1.384]" }, { "name":"DDW44_27860 lipopolysaccharide biosynthesis protein RfbH\tK13328 spnQ; dTDP-4-dehydro-2,6-dideoxy-D-glucose 3-dehydratase [EC:4.2.1.164]" }, { "name":"DDW44_27825 DegT\/DnrJ\/EryC1\/StrS family aminotransferase\tK16436 evaB; dTDP-3-amino-2,3,6-trideoxy-4-keto-D-glucose\/dTDP-3-amino-3,4,6-trideoxy-alpha-D-glucose\/dTDP-2,6-dideoxy-D-kanosamine transaminase [EC:2.6.1.- 2.6.1.106]" } ] }, { "name":"01054 Nonribosomal peptide structures" }, { "name":"01053 Biosynthesis of siderophore group nonribosomal peptides", "children":[ { "name":"DDW44_27640 4'-phosphopantetheinyl transferase\tK02362 entD; enterobactin synthetase component D \/ holo-[acyl-carrier protein] synthase [EC:6.3.2.14 2.7.8.7]" } ] }, { "name":"01055 Biosynthesis of vancomycin group antibiotics [PATH:stir01055]", "children":[ { "name":"DDW44_27750 rfbB; dTDP-glucose 4,6-dehydratase\tK01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]" }, { "name":"DDW44_27815 NDP-hexose 2,3-dehydratase\tK16435 evaA; dTDP-4-dehydro-6-deoxy-alpha-D-glucopyranose 2,3-dehydratase [EC:4.2.1.159]" }, { "name":"DDW44_27825 DegT\/DnrJ\/EryC1\/StrS family aminotransferase\tK16436 evaB; dTDP-3-amino-2,3,6-trideoxy-4-keto-D-glucose\/dTDP-3-amino-3,4,6-trideoxy-alpha-D-glucose\/dTDP-2,6-dideoxy-D-kanosamine transaminase [EC:2.6.1.- 2.6.1.106]" }, { "name":"DDW44_27805 dTDP-4-keto-6-deoxy-D-glucose epimerase\tK16438 evaD; 5-epimerase [EC:5.1.3.-]" } ] } ] }, { "name":"09110 Biosynthesis of other secondary metabolites", "children":[ { "name":"00940 Phenylpropanoid biosynthesis" }, { "name":"00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis" }, { "name":"00941 Flavonoid biosynthesis" }, { "name":"00944 Flavone and flavonol biosynthesis" }, { "name":"00942 Anthocyanin biosynthesis" }, { "name":"00943 Isoflavonoid biosynthesis" }, { "name":"00946 Degradation of flavonoids [PATH:stir00946]", "children":[ { "name":"DDW44_09105 beta-glucosidase\tK05350 bglB; beta-glucosidase [EC:3.2.1.21]" }, { "name":"DDW44_24645 beta-glucosidase\tK05350 bglB; beta-glucosidase [EC:3.2.1.21]" } ] }, { "name":"00901 Indole alkaloid biosynthesis" }, { "name":"00403 Indole diterpene alkaloid biosynthesis" }, { "name":"00950 Isoquinoline alkaloid biosynthesis" }, { "name":"00960 Tropane, piperidine and pyridine alkaloid biosynthesis" }, { "name":"00996 Biosynthesis of various alkaloids" }, { "name":"00232 Caffeine metabolism", "children":[ { "name":"DDW44_25770 pucL; urate oxidase\tK00365 uaZ; urate oxidase [EC:1.7.3.3]" } ] }, { "name":"00965 Betalain biosynthesis" }, { "name":"00966 Glucosinolate biosynthesis" }, { "name":"00402 Benzoxazinoid biosynthesis" }, { "name":"00311 Penicillin and cephalosporin biosynthesis [PATH:stir00311]", "children":[ { "name":"DDW44_23095 non-ribosomal peptide synthetase\tK12743 PCBAB; N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase [EC:6.3.2.26]" }, { "name":"DDW44_23090 penicillin synthase\tK04126 PCBC; isopenicillin-N synthase [EC:1.21.3.1]" }, { "name":"DDW44_23120 aminotransferase\tK04127 cefD; isopenicillin-N epimerase [EC:5.1.1.17]" }, { "name":"DDW44_12435 penicillin acylase family protein\tK01434 pac; penicillin G amidase [EC:3.5.1.11]" }, { "name":"DDW44_19895 penicillin amidase\tK01434 pac; penicillin G amidase [EC:3.5.1.11]" }, { "name":"DDW44_23115 class A beta-lactamase\tK17836 penP; beta-lactamase class A [EC:3.5.2.6]" } ] }, { "name":"00332 Carbapenem biosynthesis [PATH:stir00332]", "children":[ { "name":"DDW44_08230 glutamate 5-kinase\tK00931 proB; glutamate 5-kinase [EC:2.7.2.11]" }, { "name":"DDW44_08220 glutamate-5-semialdehyde dehydrogenase\tK00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]" } ] }, { "name":"00261 Monobactam biosynthesis [PATH:stir00261]", "children":[ { "name":"DDW44_27565 MbtH family protein\tK05375 mbtH; MbtH protein" }, { "name":"DDW44_31360 MbtH family protein\tK05375 mbtH; MbtH protein" }, { "name":"DDW44_24760 sulfate adenylyltransferase\tK00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]" }, { "name":"DDW44_24765 sulfate adenylyltransferase subunit CysD\tK00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]" }, { "name":"DDW44_15970 aspartate kinase\tK00928 lysC; aspartate kinase [EC:2.7.2.4]" }, { "name":"DDW44_08485 aspartate-semialdehyde dehydrogenase\tK00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]" }, { "name":"DDW44_15975 aspartate-semialdehyde dehydrogenase\tK00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]" }, { "name":"DDW44_02780 dapA; 4-hydroxy-tetrahydrodipicolinate synthase\tK01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]" }, { "name":"DDW44_20855 dihydrodipicolinate synthase family protein\tK01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]" }, { "name":"DDW44_22955 4-hydroxy-tetrahydrodipicolinate synthase\tK01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]" }, { "name":"DDW44_22930 4-hydroxy-tetrahydrodipicolinate reductase\tK00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]" } ] }, { "name":"00331 Clavulanic acid biosynthesis" }, { "name":"00521 Streptomycin biosynthesis [PATH:stir00521]", "children":[ { "name":"DDW44_03950 glucokinase\tK25026 glk; glucokinase [EC:2.7.1.2]" }, { "name":"DDW44_13815 sugar kinase\tK25026 glk; glucokinase [EC:2.7.1.2]" }, { "name":"DDW44_26105 glucokinase\tK25026 glk; glucokinase [EC:2.7.1.2]" }, { "name":"DDW44_29900 hypothetical protein\tK25026 glk; glucokinase [EC:2.7.1.2]" }, { "name":"DDW44_29105 alpha-D-glucose phosphate-specific phosphoglucomutase\tK01835 pgm; phosphoglucomutase [EC:5.4.2.2]" }, { "name":"DDW44_14980 inositol-3-phosphate synthase\tK01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]" }, { "name":"DDW44_17815 inositol monophosphatase\tK01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]" }, { "name":"DDW44_23585 inositol monophosphatase\tK01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]" }, { "name":"DDW44_26005 dehydrogenase\tK00010 iolG; myo-inositol 2-dehydrogenase \/ D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]" }, { "name":"DDW44_27920 rfbA; glucose-1-phosphate thymidylyltransferase\tK00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]" }, { "name":"DDW44_27750 rfbB; dTDP-glucose 4,6-dehydratase\tK01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]" }, { "name":"DDW44_10285 hydroxyurea phosphotransferase\tK12570 aphD; streptomycin 6-kinase [EC:2.7.1.72]" } ] }, { "name":"00524 Neomycin, kanamycin and gentamicin biosynthesis", "children":[ { "name":"DDW44_03950 glucokinase\tK25026 glk; glucokinase [EC:2.7.1.2]" }, { "name":"DDW44_13815 sugar kinase\tK25026 glk; glucokinase [EC:2.7.1.2]" }, { "name":"DDW44_26105 glucokinase\tK25026 glk; glucokinase [EC:2.7.1.2]" }, { "name":"DDW44_29900 hypothetical protein\tK25026 glk; glucokinase [EC:2.7.1.2]" } ] }, { "name":"00525 Acarbose and validamycin biosynthesis [PATH:stir00525]", "children":[ { "name":"DDW44_27920 rfbA; glucose-1-phosphate thymidylyltransferase\tK00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]" }, { "name":"DDW44_27750 rfbB; dTDP-glucose 4,6-dehydratase\tK01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]" }, { "name":"DDW44_27335 carbohydrate kinase family protein\tK19978 acbK; acarbose 7IV-phosphotransferase [EC:2.7.1.187]" } ] }, { "name":"00401 Novobiocin biosynthesis [PATH:stir00401]", "children":[ { "name":"DDW44_07135 prephenate dehydrogenase\tK04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]" }, { "name":"DDW44_31420 prephenate dehydrogenase\/arogenate dehydrogenase family protein\tK04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]" }, { "name":"DDW44_16535 aminotransferase\tK00812 aspB; aspartate aminotransferase [EC:2.6.1.1]" }, { "name":"DDW44_17890 aspartate aminotransferase\tK00812 aspB; aspartate aminotransferase [EC:2.6.1.1]" }, { "name":"DDW44_20585 aminotransferase\tK00812 aspB; aspartate aminotransferase [EC:2.6.1.1]" }, { "name":"DDW44_02685 threonine-phosphate decarboxylase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"DDW44_03515 histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"DDW44_14815 hisC; histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"DDW44_29230 hisC; histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" } ] }, { "name":"00404 Staurosporine biosynthesis", "children":[ { "name":"DDW44_27805 dTDP-4-keto-6-deoxy-D-glucose epimerase\tK16438 evaD; 5-epimerase [EC:5.1.3.-]" } ] }, { "name":"00405 Phenazine biosynthesis [PATH:stir00405]", "children":[ { "name":"DDW44_03905 phenazine-specific anthranilate synthase component I\tK13063 phzE; 2-amino-4-deoxychorismate synthase [EC:2.6.1.86]" }, { "name":"DDW44_03470 anthranilate synthase component I\tK01657 trpE; anthranilate synthase component I [EC:4.1.3.27]" } ] }, { "name":"00333 Prodigiosin biosynthesis", "children":[ { "name":"DDW44_06080 ACP S-malonyltransferase\tK00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]" }, { "name":"DDW44_07505 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"DDW44_07630 KR domain-containing protein\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"DDW44_10785 3-oxoacyl-ACP reductase FabG\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" } ] }, { "name":"00254 Aflatoxin biosynthesis" }, { "name":"00975 Biosynthesis of various siderophores [PATH:stir00975]", "children":[ { "name":"DDW44_08995 aminotransferase class V-fold PLP-dependent enzyme\tK28682 desA; lysine decarboxylase [EC:4.1.1.18]" }, { "name":"DDW44_03260 lysine 6-monooxygenase\tK27501 alcA; putrescine\/cadaverine\/1,3-diaminopropane N-hydroxylase [EC:1.14.13.252 1.14.13.-]" }, { "name":"DDW44_09000 alcaligin biosynthesis protein\tK27501 alcA; putrescine\/cadaverine\/1,3-diaminopropane N-hydroxylase [EC:1.14.13.252 1.14.13.-]" }, { "name":"DDW44_09005 N-acetyltransferase\tK28683 desC; hydroxycadaverine acyltransferase [EC:2.3.1.-]" }, { "name":"DDW44_09010 IucA\/IucC family protein\tK28684 desD; desferrioxamine E synthetase [EC:6.3.2.-]" }, { "name":"DDW44_02710 ectB; diaminobutyrate--2-oxoglutarate transaminase\tK00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]" }, { "name":"DDW44_23245 aspartate aminotransferase family protein\tK00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]" }, { "name":"DDW44_03265 aspartate aminotransferase family protein\tK13745 ddc; L-2,4-diaminobutyrate decarboxylase [EC:4.1.1.86]" }, { "name":"DDW44_20885 2,3-diaminopropionate biosynthesis protein SbnA\tK21949 sbnA; N-(2-amino-2-carboxyethyl)-L-glutamate synthase [EC:2.5.1.140]" }, { "name":"DDW44_29810 2,3-diaminopropionate biosynthesis protein SbnA\tK21949 sbnA; N-(2-amino-2-carboxyethyl)-L-glutamate synthase [EC:2.5.1.140]" } ] }, { "name":"00998 Biosynthesis of various antibiotics [PATH:stir00998]", "children":[ { "name":"DDW44_06090 acyl carrier protein\tK02078 acpP; acyl carrier protein" }, { "name":"DDW44_29580 acyl carrier protein\tK02078 acpP; acyl carrier protein" }, { "name":"DDW44_20885 2,3-diaminopropionate biosynthesis protein SbnA\tK21949 sbnA; N-(2-amino-2-carboxyethyl)-L-glutamate synthase [EC:2.5.1.140]" }, { "name":"DDW44_29810 2,3-diaminopropionate biosynthesis protein SbnA\tK21949 sbnA; N-(2-amino-2-carboxyethyl)-L-glutamate synthase [EC:2.5.1.140]" }, { "name":"DDW44_05705 FAD-binding protein\tK25562 creE; L-aspartate N-monooxygenase (nitrosuccinate-forming) [EC:1.14.13.248]" } ] }, { "name":"00999 Biosynthesis of various plant secondary metabolites [PATH:stir00999]", "children":[ { "name":"DDW44_11365 methionine adenosyltransferase\tK00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]" }, { "name":"DDW44_31075 methionine adenosyltransferase\tK00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]" }, { "name":"DDW44_09105 beta-glucosidase\tK05350 bglB; beta-glucosidase [EC:3.2.1.21]" }, { "name":"DDW44_24645 beta-glucosidase\tK05350 bglB; beta-glucosidase [EC:3.2.1.21]" } ] }, { "name":"00997 Biosynthesis of various other secondary metabolites [PATH:stir00997]", "children":[ { "name":"DDW44_25450 pyoverdine biosynthesis protein PvcA\tK22952 pvcA; L-tyrosine isonitrile synthase [EC:4.1.99.24]" }, { "name":"DDW44_20550 polyprenyl synthetase\tK13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]" }, { "name":"DDW44_25165 polyprenyl diphosphate synthase\tK13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]" }, { "name":"DDW44_27255 dimethylallyltranstransferase\tK13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]" } ] } ] }, { "name":"09111 Xenobiotics biodegradation and metabolism", "children":[ { "name":"00362 Benzoate degradation [PATH:stir00362]", "children":[ { "name":"DDW44_26115 pcaC; 4-carboxymuconolactone decarboxylase\tK14727 pcaL; 3-oxoadipate enol-lactonase \/ 4-carboxymuconolactone decarboxylase [EC:3.1.1.24 4.1.1.44]" }, { "name":"DDW44_03340 acetyl-CoA C-acetyltransferase\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"DDW44_04745 Nonspecific lipid-transfer protein\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"DDW44_05610 steroid 3-ketoacyl-CoA thiolase\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"DDW44_24435 acetyl-CoA C-acyltransferase\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"DDW44_01585 dmpG; 4-hydroxy-2-oxovalerate aldolase\tK01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]" }, { "name":"DDW44_01590 acetaldehyde dehydrogenase (acetylating)\tK04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10]" }, { "name":"DDW44_31085 4-oxalocrotonate tautomerase family enzyme\tK01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]" }, { "name":"DDW44_03845 oxidoreductase\tK00529 hcaD; 3-phenylpropionate\/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]" }, { "name":"DDW44_07755 FAD-dependent oxidoreductase\tK00529 hcaD; 3-phenylpropionate\/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]" }, { "name":"DDW44_16540 acyl--CoA ligase\tK04116 aliA; cyclohexanecarboxylate-CoA ligase [EC:6.2.1.-]" }, { "name":"DDW44_27080 3-hydroxyacyl-CoA dehydrogenase\tK01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase \/ enoyl-CoA hydratase \/ 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]" }, { "name":"DDW44_00020 hypothetical protein\tK23352 gcdD; glutaconyl-CoA\/methylmalonyl-CoA decarboxylase subunit delta" }, { "name":"DDW44_07075 acyl-CoA dehydrogenase\tK00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]" }, { "name":"DDW44_21415 enoyl-CoA hydratase\tK01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]" }, { "name":"DDW44_00290 3-hydroxybutyryl-CoA dehydrogenase\tK00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]" }, { "name":"DDW44_02020 3-hydroxybutyryl-CoA dehydrogenase\tK00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]" }, { "name":"DDW44_12830 3-hydroxyacyl-CoA dehydrogenase\tK00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]" }, { "name":"DDW44_15410 3-hydroxyacyl-CoA dehydrogenase\tK00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]" }, { "name":"DDW44_21105 3-hydroxybutyryl-CoA dehydrogenase\tK00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]" }, { "name":"DDW44_25480 3-hydroxybutyryl-CoA dehydrogenase\tK00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]" }, { "name":"DDW44_26360 3-hydroxybutyryl-CoA dehydrogenase\tK00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]" }, { "name":"DDW44_11800 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_12820 acetyl-CoA C-acyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_21175 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_27075 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_29685 thiolase domain-containing protein\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" } ] }, { "name":"00627 Aminobenzoate degradation [PATH:stir00627]", "children":[ { "name":"DDW44_00460 amidase\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"DDW44_26230 amidase\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"DDW44_27350 amidase\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"DDW44_28920 amidase\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"DDW44_30530 amidase\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"DDW44_09425 acylphosphatase\tK01512 acyP; acylphosphatase [EC:3.6.1.7]" }, { "name":"DDW44_22120 acylphosphatase\tK01512 acyP; acylphosphatase [EC:3.6.1.7]" }, { "name":"DDW44_17360 aromatic acid decarboxylase\tK03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]" }, { "name":"DDW44_24145 2-aminobenzoate-CoA ligase\tK08295 abmG; 2-aminobenzoate-CoA ligase [EC:6.2.1.32]" }, { "name":"DDW44_24135 bifunctional salicylyl-CoA 5-hydroxylase\/oxidoreductase\tK09461 E1.14.13.40; anthraniloyl-CoA monooxygenase [EC:1.14.13.40]" }, { "name":"DDW44_21415 enoyl-CoA hydratase\tK01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]" } ] }, { "name":"00364 Fluorobenzoate degradation" }, { "name":"00625 Chloroalkane and chloroalkene degradation [PATH:stir00625]", "children":[ { "name":"DDW44_29210 haloalkane dehalogenase\tK01563 dhaA; haloalkane dehalogenase [EC:3.8.1.5]" }, { "name":"DDW44_01395 zinc-binding alcohol dehydrogenase family protein\tK13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]" }, { "name":"DDW44_02585 alcohol dehydrogenase\tK00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase \/ alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]" }, { "name":"DDW44_04725 Zn-dependent alcohol dehydrogenase\tK00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase \/ alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]" }, { "name":"DDW44_02590 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_04850 aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_12765 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_16710 aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_18985 betaine-aldehyde dehydrogenase\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_31145 hypothetical protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"DDW44_14640 aldehyde dehydrogenase\tK00148 fdhA; glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46]" }, { "name":"DDW44_26960 haloacid dehalogenase type II\tK01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]" } ] }, { "name":"00361 Chlorocyclohexane and chlorobenzene degradation [PATH:stir00361]", "children":[ { "name":"DDW44_29210 haloalkane dehalogenase\tK01563 dhaA; haloalkane dehalogenase [EC:3.8.1.5]" }, { "name":"DDW44_26960 haloacid dehalogenase type II\tK01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]" } ] }, { "name":"00623 Toluene degradation" }, { "name":"00622 Xylene degradation [PATH:stir00622]", "children":[ { "name":"DDW44_31085 4-oxalocrotonate tautomerase family enzyme\tK01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]" }, { "name":"DDW44_01585 dmpG; 4-hydroxy-2-oxovalerate aldolase\tK01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]" }, { "name":"DDW44_01590 acetaldehyde dehydrogenase (acetylating)\tK04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10]" } ] }, { "name":"00633 Nitrotoluene degradation [PATH:stir00633]", "children":[ { "name":"DDW44_02725 alkene reductase\tK10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]" }, { "name":"DDW44_31290 alkene reductase\tK10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]" }, { "name":"DDW44_01000 hydrogenase\tK06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]" }, { "name":"DDW44_01005 hydrogenase expression protein HypE\tK06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]" } ] }, { "name":"00642 Ethylbenzene degradation", "children":[ { "name":"DDW44_03340 acetyl-CoA C-acetyltransferase\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"DDW44_04745 Nonspecific lipid-transfer protein\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"DDW44_05610 steroid 3-ketoacyl-CoA thiolase\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"DDW44_24435 acetyl-CoA C-acyltransferase\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" } ] }, { "name":"00643 Styrene degradation [PATH:stir00643]", "children":[ { "name":"DDW44_02605 hmgA; homogentisate 1,2-dioxygenase\tK00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]" }, { "name":"DDW44_17520 fahA; fumarylacetoacetase\tK01555 FAH; fumarylacetoacetase [EC:3.7.1.2]" }, { "name":"DDW44_00460 amidase\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"DDW44_26230 amidase\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"DDW44_27350 amidase\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"DDW44_28920 amidase\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"DDW44_30530 amidase\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" } ] }, { "name":"00791 Atrazine degradation", "children":[ { "name":"DDW44_10420 urease subunit alpha\tK01428 ureC; urease subunit alpha [EC:3.5.1.5]" }, { "name":"DDW44_21850 urease subunit alpha\tK01428 ureC; urease subunit alpha [EC:3.5.1.5]" }, { "name":"DDW44_10425 urease subunit beta\tK01429 ureB; urease subunit beta [EC:3.5.1.5]" }, { "name":"DDW44_10430 urease subunit gamma\tK01430 ureA; urease subunit gamma [EC:3.5.1.5]" }, { "name":"DDW44_21845 ureA; urease subunit gamma\tK14048 ureAB; urease subunit gamma\/beta [EC:3.5.1.5]" } ] }, { "name":"00930 Caprolactam degradation [PATH:stir00930]", "children":[ { "name":"DDW44_21415 enoyl-CoA hydratase\tK01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]" }, { "name":"DDW44_27080 3-hydroxyacyl-CoA dehydrogenase\tK01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase \/ enoyl-CoA hydratase \/ 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]" } ] }, { "name":"00363 Bisphenol degradation" }, { "name":"00621 Dioxin degradation [PATH:stir00621]", "children":[ { "name":"DDW44_31085 4-oxalocrotonate tautomerase family enzyme\tK01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]" }, { "name":"DDW44_01585 dmpG; 4-hydroxy-2-oxovalerate aldolase\tK01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]" }, { "name":"DDW44_01590 acetaldehyde dehydrogenase (acetylating)\tK04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10]" } ] }, { "name":"00626 Naphthalene degradation [PATH:stir00626]", "children":[ { "name":"DDW44_01395 zinc-binding alcohol dehydrogenase family protein\tK13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]" }, { "name":"DDW44_02585 alcohol dehydrogenase\tK00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase \/ alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]" }, { "name":"DDW44_04725 Zn-dependent alcohol dehydrogenase\tK00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase \/ alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]" } ] }, { "name":"00624 Polycyclic aromatic hydrocarbon degradation" }, { "name":"00365 Furfural degradation" }, { "name":"00984 Steroid degradation [PATH:stir00984]", "children":[ { "name":"DDW44_03980 cholesterol oxidase\tK03333 choD; cholesterol oxidase [EC:1.1.3.6]" }, { "name":"DDW44_18365 cholesterol oxidase\tK03333 choD; cholesterol oxidase [EC:1.1.3.6]" }, { "name":"DDW44_05615 steroid C27-monooxygenase\tK15981 CYP125A; cholest-4-en-3-one 26-monooxygenase [EC:1.14.15.29]" }, { "name":"DDW44_29665 acyl-CoA synthetase\tK18688 fadD19; 3-oxocholest-4-en-26-oate---CoA ligase [EC:6.2.1.42]" }, { "name":"DDW44_27065 carnitine dehydratase\tK01796 AMACR; alpha-methylacyl-CoA racemase [EC:5.1.99.4]" }, { "name":"DDW44_15720 acyl-CoA dehydrogenase\tK22818 fadE26; 3-oxocholest-4-en-26-oyl-CoA dehydrogenase alpha subunit [EC:1.3.99.-]" }, { "name":"DDW44_15360 acyl-CoA dehydrogenase\tK22819 fadE27; 3-oxocholest-4-en-26-oyl-CoA dehydrogenase beta subunit [EC:1.3.99.-]" }, { "name":"DDW44_03340 acetyl-CoA C-acetyltransferase\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"DDW44_04745 Nonspecific lipid-transfer protein\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"DDW44_05610 steroid 3-ketoacyl-CoA thiolase\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"DDW44_24435 acetyl-CoA C-acyltransferase\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"DDW44_04730 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase\tK28218 chsH3; 3-oxochol-4,22-dien-24-oyl-CoA hydratase (S-form) [EC:4.2.1.-]" }, { "name":"DDW44_04720 3-oxoacyl-ACP reductase\tK28219 chsB1; (22S)-hydroxy-3-oxochol-4-en-24-oyl-CoA dehydrogenase [EC:1.1.1.-]" }, { "name":"DDW44_14580 hypothetical protein\tK25621 chsH2; 3-oxo-4,17-pregnadiene-20-carboxyl-CoA hydratase alpha subunit [EC:4.2.1.-]" }, { "name":"DDW44_14575 acyl dehydratase\tK25622 chsH1; 3-oxo-4,17-pregnadiene-20-carboxyl-CoA hydratase beta subunit [EC:4.2.1.-]" }, { "name":"DDW44_14570 lipid-transfer protein\tK25623 ltp2; 17-hydroxy-3-oxo-4-pregnene-20-carboxyl-CoA lyase [EC:4.1.3.-]" }, { "name":"DDW44_31370 acyl-CoA dehydrogenase\tK16047 hsaA; 3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione monooxygenase [EC:1.14.14.12]" }, { "name":"DDW44_13240 NADPH-flavin oxidoreductase\tK16048 hsaB; 3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione monooxygenase reductase component [EC:1.5.1.-]" }, { "name":"DDW44_13080 fatty acid--CoA ligase\tK18687 fadD3; HIP---CoA ligase [EC:6.2.1.41]" }, { "name":"DDW44_03350 short chain dehydrogenase\tK28220 scdG; hydroxylacyl dehydrogenase [EC:1.1.-.-]" }, { "name":"DDW44_13260 acyl-CoA dehydrogenase\tK28222 scdC2; 5OH-HIP-CoA dehydrogenase [EC:1.3.99.-]" }, { "name":"DDW44_02560 dehydratase\tK28224 scdD; enoyl-CoA hydratase [EC:4.2.1.-]" }, { "name":"DDW44_03295 KR domain-containing protein\tK28225 scdE; 3-hydroxyl acyl-CoA dehydrogenase [EC:1.1.-.-]" }, { "name":"DDW44_03320 2-nitropropane dioxygenase\tK28226 scdK; acyl-CoA dehydrogenase [EC:1.3.99.-]" }, { "name":"DDW44_03305 enoyl-CoA hydratase family protein\tK28227 scdY; HIEC-CoA hydrolase [EC:4.1.-.-]" }, { "name":"DDW44_03310 CoA transferase subunit A\tK28228 scdL1; COCHEA-CoA hydrolase alpha subunit [EC:4.1.-.-]" }, { "name":"DDW44_03315 CoA-transferase\tK28229 scdL2; COCHEA-CoA hydrolase beta subunit [EC:4.1.-.-]" }, { "name":"DDW44_03355 acyl-CoA dehydrogenase\tK28230 scdM1; acyl-CoA dehydrogenase [EC:1.3.99.-]" }, { "name":"DDW44_03360 acyl-CoA dehydrogenase\tK28231 scdM2; acyl-CoA dehydrogenase [EC:1.3.99.-]" } ] }, { "name":"00980 Metabolism of xenobiotics by cytochrome P450" }, { "name":"00982 Drug metabolism - cytochrome P450" }, { "name":"00983 Drug metabolism - other enzymes" } ] }, { "name":"09112 Not included in regular maps", "children":[ { "name":"09113 Global maps only" } ] } ] }, { "name":"09120 Genetic Information Processing", "children":[ { "name":"09121 Transcription", "children":[ { "name":"03020 RNA polymerase [PATH:stir03020]", "children":[ { "name":"DDW44_17945 rpoB; DNA-directed RNA polymerase subunit beta\tK03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]" }, { "name":"DDW44_17950 DNA-directed RNA polymerase subunit beta'\tK03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]" }, { "name":"DDW44_18135 DNA-directed RNA polymerase subunit alpha\tK03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]" }, { "name":"DDW44_11375 DNA-directed RNA polymerase subunit omega\tK03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]" } ] }, { "name":"03022 Basal transcription factors", "children":[ { "name":"DDW44_13645 helicase\tK10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]" } ] }, { "name":"03040 Spliceosome" } ] }, { "name":"09122 Translation", "children":[ { "name":"03010 Ribosome [PATH:stir03010]", "children":[ { "name":"DDW44_06710 16S ribosomal RNA\tK01977 16SrRNA; 16S ribosomal RNA" }, { "name":"DDW44_07370 16S ribosomal RNA\tK01977 16SrRNA; 16S ribosomal RNA" }, { "name":"DDW44_10135 16S ribosomal RNA\tK01977 16SrRNA; 16S ribosomal RNA" }, { "name":"DDW44_10945 16S ribosomal RNA\tK01977 16SrRNA; 16S ribosomal RNA" }, { "name":"DDW44_17090 16S ribosomal RNA\tK01977 16SrRNA; 16S ribosomal RNA" }, { "name":"DDW44_06705 23S ribosomal RNA\tK01980 23SrRNA; 23S ribosomal RNA" }, { "name":"DDW44_07365 23S ribosomal RNA\tK01980 23SrRNA; 23S ribosomal RNA" }, { "name":"DDW44_10130 23S ribosomal RNA\tK01980 23SrRNA; 23S ribosomal RNA" }, { "name":"DDW44_10940 23S ribosomal RNA\tK01980 23SrRNA; 23S ribosomal RNA" }, { "name":"DDW44_17095 23S ribosomal RNA\tK01980 23SrRNA; 23S ribosomal RNA" }, { "name":"DDW44_06700 rrf; 5S ribosomal RNA\tK01985 5SrRNA; 5S ribosomal RNA" }, { "name":"DDW44_07360 rrf; 5S ribosomal RNA\tK01985 5SrRNA; 5S ribosomal RNA" }, { "name":"DDW44_10125 rrf; 5S ribosomal RNA\tK01985 5SrRNA; 5S ribosomal RNA" }, { "name":"DDW44_10935 rrf; 5S ribosomal RNA\tK01985 5SrRNA; 5S ribosomal RNA" }, { "name":"DDW44_17100 rrf; 5S ribosomal RNA\tK01985 5SrRNA; 5S ribosomal RNA" }, { "name":"DDW44_22965 rrf; 5S ribosomal RNA\tK01985 5SrRNA; 5S ribosomal RNA" }, { "name":"DDW44_03145 30S ribosomal protein S1\tK02945 RP-S1; small subunit ribosomal protein S1" }, { "name":"DDW44_22275 rpsB; 30S ribosomal protein S2\tK02967 RP-S2; small subunit ribosomal protein S2" }, { "name":"DDW44_18025 30S ribosomal protein S3\tK02982 RP-S3; small subunit ribosomal protein S3" }, { "name":"DDW44_11510 30S ribosomal protein S4\tK02986 RP-S4; small subunit ribosomal protein S4" }, { "name":"DDW44_18085 30S ribosomal protein S5\tK02988 RP-S5; small subunit ribosomal protein S5" }, { "name":"DDW44_14945 30S ribosomal protein S6\tK02990 RP-S6; small subunit ribosomal protein S6" }, { "name":"DDW44_17965 30S ribosomal protein S7\tK02992 RP-S7; small subunit ribosomal protein S7" }, { "name":"DDW44_18070 30S ribosomal protein S8\tK02994 RP-S8; small subunit ribosomal protein S8" }, { "name":"DDW44_18165 30S ribosomal protein S9\tK02996 RP-S9; small subunit ribosomal protein S9" }, { "name":"DDW44_17990 30S ribosomal protein S10\tK02946 RP-S10; small subunit ribosomal protein S10" }, { "name":"DDW44_18130 30S ribosomal protein S11\tK02948 RP-S11; small subunit ribosomal protein S11" }, { "name":"DDW44_17960 30S ribosomal protein S12\tK02950 RP-S12; small subunit ribosomal protein S12" }, { "name":"DDW44_18125 30S ribosomal protein S13\tK02952 RP-S13; small subunit ribosomal protein S13" }, { "name":"DDW44_16670 30S ribosomal protein S14\tK02954 RP-S14; small subunit ribosomal protein S14" }, { "name":"DDW44_18060 type Z 30S ribosomal protein S14\tK02954 RP-S14; small subunit ribosomal protein S14" }, { "name":"DDW44_28000 30S ribosomal protein S14\tK02954 RP-S14; small subunit ribosomal protein S14" }, { "name":"DDW44_22915 30S ribosomal protein S15\tK02956 RP-S15; small subunit ribosomal protein S15" }, { "name":"DDW44_22190 30S ribosomal protein S16\tK02959 RP-S16; small subunit ribosomal protein S16" }, { "name":"DDW44_18040 30S ribosomal protein S17\tK02961 RP-S17; small subunit ribosomal protein S17" }, { "name":"DDW44_14935 rpsR; 30S ribosomal protein S18\tK02963 RP-S18; small subunit ribosomal protein S18" }, { "name":"DDW44_16690 rpsR; 30S ribosomal protein S18\tK02963 RP-S18; small subunit ribosomal protein S18" }, { "name":"DDW44_18015 30S ribosomal protein S19\tK02965 RP-S19; small subunit ribosomal protein S19" }, { "name":"DDW44_08105 30S ribosomal protein S20\tK02968 RP-S20; small subunit ribosomal protein S20" }, { "name":"DDW44_17920 50S ribosomal protein L1\tK02863 RP-L1; large subunit ribosomal protein L1" }, { "name":"DDW44_18010 50S ribosomal protein L2\tK02886 RP-L2; large subunit ribosomal protein L2" }, { "name":"DDW44_17995 50S ribosomal protein L3\tK02906 RP-L3; large subunit ribosomal protein L3" }, { "name":"DDW44_18000 50S ribosomal protein L4\tK02926 RP-L4; large subunit ribosomal protein L4" }, { "name":"DDW44_18055 50S ribosomal protein L5\tK02931 RP-L5; large subunit ribosomal protein L5" }, { "name":"DDW44_18075 50S ribosomal protein L6\tK02933 RP-L6; large subunit ribosomal protein L6" }, { "name":"DDW44_14930 50S ribosomal protein L9\tK02939 RP-L9; large subunit ribosomal protein L9" }, { "name":"DDW44_17930 50S ribosomal protein L10\tK02864 RP-L10; large subunit ribosomal protein L10" }, { "name":"DDW44_17915 rplK; 50S ribosomal protein L11\tK02867 RP-L11; large subunit ribosomal protein L11" }, { "name":"DDW44_17935 50S ribosomal protein L7\/L12\tK02935 RP-L7; large subunit ribosomal protein L7\/L12" }, { "name":"DDW44_18160 50S ribosomal protein L13\tK02871 RP-L13; large subunit ribosomal protein L13" }, { "name":"DDW44_18045 50S ribosomal protein L14\tK02874 RP-L14; large subunit ribosomal protein L14" }, { "name":"DDW44_18095 50S ribosomal protein L15\tK02876 RP-L15; large subunit ribosomal protein L15" }, { "name":"DDW44_18030 50S ribosomal protein L16\tK02878 RP-L16; large subunit ribosomal protein L16" }, { "name":"DDW44_18140 50S ribosomal protein L17\tK02879 RP-L17; large subunit ribosomal protein L17" }, { "name":"DDW44_18080 50S ribosomal protein L18\tK02881 RP-L18; large subunit ribosomal protein L18" }, { "name":"DDW44_22210 50S ribosomal protein L19\tK02884 RP-L19; large subunit ribosomal protein L19" }, { "name":"DDW44_02060 50S ribosomal protein L20\tK02887 RP-L20; large subunit ribosomal protein L20" }, { "name":"DDW44_08260 rplU; 50S ribosomal protein L21\tK02888 RP-L21; large subunit ribosomal protein L21" }, { "name":"DDW44_18020 50S ribosomal protein L22\tK02890 RP-L22; large subunit ribosomal protein L22" }, { "name":"DDW44_18005 50S ribosomal protein L23\tK02892 RP-L23; large subunit ribosomal protein L23" }, { "name":"DDW44_18050 50S ribosomal protein L24\tK02895 RP-L24; large subunit ribosomal protein L24" }, { "name":"DDW44_12065 50S ribosomal protein L25\tK02897 RP-L25; large subunit ribosomal protein L25" }, { "name":"DDW44_08255 50S ribosomal protein L27\tK02899 RP-L27; large subunit ribosomal protein L27" }, { "name":"DDW44_22065 rpmB; 50S ribosomal protein L28\tK02902 RP-L28; large subunit ribosomal protein L28" }, { "name":"DDW44_27995 rpmB; 50S ribosomal protein L28\tK02902 RP-L28; large subunit ribosomal protein L28" }, { "name":"DDW44_18035 50S ribosomal protein L29\tK02904 RP-L29; large subunit ribosomal protein L29" }, { "name":"DDW44_18090 50S ribosomal protein L30\tK02907 RP-L30; large subunit ribosomal protein L30" }, { "name":"DDW44_16680 type B 50S ribosomal protein L31\tK02909 RP-L31; large subunit ribosomal protein L31" }, { "name":"DDW44_20985 rpmE; 50S ribosomal protein L31\tK02909 RP-L31; large subunit ribosomal protein L31" }, { "name":"DDW44_27990 hypothetical protein\tK02909 RP-L31; large subunit ribosomal protein L31" }, { "name":"DDW44_06225 rpmF; 50S ribosomal protein L32\tK02911 RP-L32; large subunit ribosomal protein L32" }, { "name":"DDW44_22100 50S ribosomal protein L32\tK02911 RP-L32; large subunit ribosomal protein L32" }, { "name":"DDW44_28010 rpmF; 50S ribosomal protein L32\tK02911 RP-L32; large subunit ribosomal protein L32" }, { "name":"DDW44_16675 rpmG; 50S ribosomal protein L33\tK02913 RP-L33; large subunit ribosomal protein L33" }, { "name":"DDW44_17865 rpmG; 50S ribosomal protein L33\tK02913 RP-L33; large subunit ribosomal protein L33" }, { "name":"DDW44_15070 50S ribosomal protein L34\tK02914 RP-L34; large subunit ribosomal protein L34" }, { "name":"DDW44_02065 rpmI; 50S ribosomal protein L35\tK02916 RP-L35; large subunit ribosomal protein L35" }, { "name":"DDW44_18120 50S ribosomal protein L36\tK02919 RP-L36; large subunit ribosomal protein L36" } ] }, { "name":"00970 Aminoacyl-tRNA biosynthesis [PATH:stir00970]", "children":[ { "name":"DDW44_08165 tRNA-Ala\tK14218 tRNA-Ala; tRNA Ala" }, { "name":"DDW44_08180 tRNA-Ala\tK14218 tRNA-Ala; tRNA Ala" }, { "name":"DDW44_12395 tRNA-Ala\tK14218 tRNA-Ala; tRNA Ala" }, { "name":"DDW44_15150 tRNA-Ala\tK14218 tRNA-Ala; tRNA Ala" }, { "name":"DDW44_08665 tRNA-Arg\tK14219 tRNA-Arg; tRNA Arg" }, { "name":"DDW44_12600 tRNA-Arg\tK14219 tRNA-Arg; tRNA Arg" }, { "name":"DDW44_14540 tRNA-Arg\tK14219 tRNA-Arg; tRNA Arg" }, { "name":"DDW44_20935 tRNA-Arg\tK14219 tRNA-Arg; tRNA Arg" }, { "name":"DDW44_06335 tRNA-Asn\tK14220 tRNA-Asn; tRNA Asn" }, { "name":"DDW44_06340 tRNA-Asn\tK14220 tRNA-Asn; tRNA Asn" }, { "name":"DDW44_06870 tRNA-Asp\tK14221 tRNA-Asp; tRNA Asp" }, { "name":"DDW44_06890 tRNA-Asp\tK14221 tRNA-Asp; tRNA Asp" }, { "name":"DDW44_14130 tRNA-Asp\tK14221 tRNA-Asp; tRNA Asp" }, { "name":"DDW44_01785 tRNA-Cys\tK14222 tRNA-Cys; tRNA Cys" }, { "name":"DDW44_12050 tRNA-Gln\tK14223 tRNA-Gln; tRNA Gln" }, { "name":"DDW44_21960 tRNA-Gln\tK14223 tRNA-Gln; tRNA Gln" }, { "name":"DDW44_21975 tRNA-Gln\tK14223 tRNA-Gln; tRNA Gln" }, { "name":"DDW44_06865 tRNA-Glu\tK14224 tRNA-Glu; tRNA Glu" }, { "name":"DDW44_21965 tRNA-Glu\tK14224 tRNA-Glu; tRNA Glu" }, { "name":"DDW44_21970 tRNA-Glu\tK14224 tRNA-Glu; tRNA Glu" }, { "name":"DDW44_21980 tRNA-Glu\tK14224 tRNA-Glu; tRNA Glu" }, { "name":"DDW44_01780 tRNA-Gly\tK14225 tRNA-Gly; tRNA Gly" }, { "name":"DDW44_05285 tRNA-Gly\tK14225 tRNA-Gly; tRNA Gly" }, { "name":"DDW44_08410 tRNA-Gly\tK14225 tRNA-Gly; tRNA Gly" }, { "name":"DDW44_14210 tRNA-Gly\tK14225 tRNA-Gly; tRNA Gly" }, { "name":"DDW44_14215 tRNA-Gly\tK14225 tRNA-Gly; tRNA Gly" }, { "name":"DDW44_14240 tRNA-Gly\tK14225 tRNA-Gly; tRNA Gly" }, { "name":"DDW44_09050 tRNA-His\tK14226 tRNA-His; tRNA His" }, { "name":"DDW44_15125 tRNA-Ile\tK14227 tRNA-Ile; tRNA Ile" }, { "name":"DDW44_02420 tRNA-Leu\tK14228 tRNA-Leu; tRNA Leu" }, { "name":"DDW44_03230 tRNA-Leu\tK14228 tRNA-Leu; tRNA Leu" }, { "name":"DDW44_09505 tRNA-Leu\tK14228 tRNA-Leu; tRNA Leu" }, { "name":"DDW44_11830 tRNA-Leu\tK14228 tRNA-Leu; tRNA Leu" }, { "name":"DDW44_15325 tRNA-Leu\tK14228 tRNA-Leu; tRNA Leu" }, { "name":"DDW44_26590 tRNA-Leu\tK14228 tRNA-Leu; tRNA Leu" }, { "name":"DDW44_06840 tRNA-Lys\tK14229 tRNA-Lys; tRNA Lys" }, { "name":"DDW44_09170 tRNA-Lys\tK14229 tRNA-Lys; tRNA Lys" }, { "name":"DDW44_09240 tRNA-Lys\tK14229 tRNA-Lys; tRNA Lys" }, { "name":"DDW44_09265 tRNA-Lys\tK14229 tRNA-Lys; tRNA Lys" }, { "name":"DDW44_06330 tRNA-Met\tK14230 tRNA-Met; tRNA Met" }, { "name":"DDW44_06800 tRNA-Met\tK14230 tRNA-Met; tRNA Met" }, { "name":"DDW44_17860 tRNA-Met\tK14230 tRNA-Met; tRNA Met" }, { "name":"DDW44_20310 tRNA-Met\tK14230 tRNA-Met; tRNA Met" }, { "name":"DDW44_20340 tRNA-Met\tK14230 tRNA-Met; tRNA Met" }, { "name":"DDW44_06875 tRNA-Phe\tK14231 tRNA-Phe; tRNA Phe" }, { "name":"DDW44_06895 tRNA-Phe\tK14231 tRNA-Phe; tRNA Phe" }, { "name":"DDW44_08405 tRNA-Pro\tK14232 tRNA-Pro; tRNA Pro" }, { "name":"DDW44_16250 tRNA-Pro\tK14232 tRNA-Pro; tRNA Pro" }, { "name":"DDW44_27475 tRNA-Pro\tK14232 tRNA-Pro; tRNA Pro" }, { "name":"DDW44_27635 tRNA-Pro\tK14232 tRNA-Pro; tRNA Pro" }, { "name":"DDW44_14280 tRNA-Ser\tK14233 tRNA-Ser; tRNA Ser" }, { "name":"DDW44_14330 tRNA-Ser\tK14233 tRNA-Ser; tRNA Ser" }, { "name":"DDW44_14440 tRNA-Ser\tK14233 tRNA-Ser; tRNA Ser" }, { "name":"DDW44_14545 tRNA-Ser\tK14233 tRNA-Ser; tRNA Ser" }, { "name":"DDW44_14615 tRNA-Ser\tK14233 tRNA-Ser; tRNA Ser" }, { "name":"DDW44_14735 tRNA-Ser\tK14233 tRNA-Ser; tRNA Ser" }, { "name":"DDW44_14035 tRNA-Thr\tK14234 tRNA-Thr; tRNA Thr" }, { "name":"DDW44_16485 tRNA-Thr\tK14234 tRNA-Thr; tRNA Thr" }, { "name":"DDW44_17855 tRNA-Thr\tK14234 tRNA-Thr; tRNA Thr" }, { "name":"DDW44_22970 tRNA-Thr\tK14234 tRNA-Thr; tRNA Thr" }, { "name":"DDW44_17895 tRNA-Trp\tK14235 tRNA-Trp; tRNA Trp" }, { "name":"DDW44_17675 tRNA-Tyr\tK14236 tRNA-Tyr; tRNA Tyr" }, { "name":"DDW44_01735 tRNA-Val\tK14237 tRNA-Val; tRNA Val" }, { "name":"DDW44_01790 tRNA-Val\tK14237 tRNA-Val; tRNA Val" }, { "name":"DDW44_01795 tRNA-Val\tK14237 tRNA-Val; tRNA Val" }, { "name":"DDW44_01800 tRNA-Val\tK14237 tRNA-Val; tRNA Val" }, { "name":"DDW44_05930 tRNA-Val\tK14237 tRNA-Val; tRNA Val" }, { "name":"DDW44_11665 tRNA-Val\tK14237 tRNA-Val; tRNA Val" }, { "name":"DDW44_21950 glutamate--tRNA ligase\tK01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]" }, { "name":"DDW44_09205 amidase\tK02433 gatA; aspartyl-tRNA(Asn)\/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]" }, { "name":"DDW44_21575 Asp-tRNA(Asn)\/Glu-tRNA(Gln) amidotransferase GatCAB subunit A\tK02433 gatA; aspartyl-tRNA(Asn)\/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]" }, { "name":"DDW44_21585 Asp-tRNA(Asn)\/Glu-tRNA(Gln) amidotransferase subunit GatB\tK02434 gatB; aspartyl-tRNA(Asn)\/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]" }, { "name":"DDW44_21570 Asp-tRNA(Asn)\/Glu-tRNA(Gln) amidotransferase subunit GatC\tK02435 gatC; aspartyl-tRNA(Asn)\/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]" }, { "name":"DDW44_11495 alanine--tRNA ligase\tK01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]" }, { "name":"DDW44_15635 aspartate--tRNA ligase\tK01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]" }, { "name":"DDW44_07905 glycine--tRNA ligase\tK01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]" }, { "name":"DDW44_11645 threonine--tRNA ligase\tK01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]" }, { "name":"DDW44_14725 serine--tRNA ligase\tK01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]" }, { "name":"DDW44_14070 cysteine--tRNA ligase\tK01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]" }, { "name":"DDW44_04625 methionine--tRNA ligase\tK01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]" }, { "name":"DDW44_04885 methionine--tRNA ligase\tK01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]" }, { "name":"DDW44_11345 methionyl-tRNA formyltransferase\tK00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]" }, { "name":"DDW44_08375 valine--tRNA ligase\tK01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]" }, { "name":"DDW44_08150 leucine--tRNA ligase\tK01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]" }, { "name":"DDW44_03635 isoleucine--tRNA ligase\tK01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]" }, { "name":"DDW44_16810 hypothetical protein\tK04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]" }, { "name":"DDW44_28365 lysS; bifunctional lysylphosphatidylglycerol synthetase\/lysine--tRNA ligase LysX\tK04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]" }, { "name":"DDW44_17200 lysine--tRNA ligase\tK04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]" }, { "name":"DDW44_17195 arginine--tRNA ligase\tK01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]" }, { "name":"DDW44_20945 hypothetical protein\tK01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]" }, { "name":"DDW44_22735 proline--tRNA ligase\tK01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]" }, { "name":"DDW44_11530 histidine--tRNA ligase\tK01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]" }, { "name":"DDW44_02045 phenylalanine--tRNA ligase subunit alpha\tK01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]" }, { "name":"DDW44_02040 phenylalanine--tRNA ligase subunit beta\tK01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]" }, { "name":"DDW44_07540 tyrosine--tRNA ligase\tK01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]" }, { "name":"DDW44_17080 trpS; tryptophan--tRNA ligase\tK01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]" }, { "name":"DDW44_18630 trpS; tryptophan--tRNA ligase\tK01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]" } ] }, { "name":"03013 Nucleocytoplasmic transport" }, { "name":"03015 mRNA surveillance pathway" }, { "name":"03008 Ribosome biogenesis in eukaryotes [PATH:stir03008]", "children":[ { "name":"DDW44_22105 ribonuclease III\tK03685 rnc; ribonuclease III [EC:3.1.26.3]" }, { "name":"DDW44_09045 oligoribonuclease\tK13288 orn; oligoribonuclease [EC:3.1.-.-]" } ] } ] }, { "name":"09123 Folding, sorting and degradation", "children":[ { "name":"03060 Protein export [PATH:stir03060]", "children":[ { "name":"DDW44_18100 preprotein translocase subunit SecY\tK03076 secY; preprotein translocase subunit SecY" }, { "name":"DDW44_17900 preprotein translocase subunit SecE\tK03073 secE; preprotein translocase subunit SecE" }, { "name":"DDW44_02930 preprotein translocase subunit SecG\tK03075 secG; preprotein translocase subunit SecG" }, { "name":"DDW44_11565 secD; protein translocase subunit SecD\tK03072 secD; preprotein translocase subunit SecD" }, { "name":"DDW44_11560 protein translocase subunit SecF\tK03074 secF; preprotein translocase subunit SecF" }, { "name":"DDW44_12635 protein translocase subunit SecD\tK12257 secDF; SecD\/SecF fusion protein" }, { "name":"DDW44_11570 yajC; preprotein translocase subunit YajC\tK03210 yajC; preprotein translocase subunit YajC" }, { "name":"DDW44_09400 hypothetical protein\tK03217 yidC; YidC\/Oxa1 family membrane protein insertase" }, { "name":"DDW44_15055 membrane protein insertase YidC\tK03217 yidC; YidC\/Oxa1 family membrane protein insertase" }, { "name":"DDW44_10050 preprotein translocase subunit SecA\tK03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]" }, { "name":"DDW44_22170 signal recognition particle protein\tK03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]" }, { "name":"DDW44_14275 ffs; signal recognition particle sRNA small type\tK01983 ffs; signal recognition particle 4.5S RNA" }, { "name":"DDW44_14325 ffs; signal recognition particle sRNA small type\tK01983 ffs; signal recognition particle 4.5S RNA" }, { "name":"DDW44_22140 signal recognition particle-docking protein FtsY\tK03110 ftsY; fused signal recognition particle receptor" }, { "name":"DDW44_03960 hypothetical protein\tK01551 arsA; arsenite\/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]" }, { "name":"DDW44_00365 hypothetical protein\tK03116 tatA; sec-independent protein translocase protein TatA" }, { "name":"DDW44_02195 twin-arginine translocase TatA\/TatE family subunit\tK03116 tatA; sec-independent protein translocase protein TatA" }, { "name":"DDW44_13200 twin-arginine translocase TatA\/TatE family subunit\tK03116 tatA; sec-independent protein translocase protein TatA" }, { "name":"DDW44_13195 hypothetical protein\tK03117 tatB; sec-independent protein translocase protein TatB" }, { "name":"DDW44_20025 Sec-independent protein translocase TatB\tK03117 tatB; sec-independent protein translocase protein TatB" }, { "name":"DDW44_02190 tatC; twin-arginine translocase subunit TatC\tK03118 tatC; sec-independent protein translocase protein TatC" }, { "name":"DDW44_22215 lepB; signal peptidase I\tK03100 lepB; signal peptidase I [EC:3.4.21.89]" }, { "name":"DDW44_22225 lepB; signal peptidase I\tK03100 lepB; signal peptidase I [EC:3.4.21.89]" }, { "name":"DDW44_22230 lepB; signal peptidase I\tK03100 lepB; signal peptidase I [EC:3.4.21.89]" }, { "name":"DDW44_03620 signal peptidase II\tK03101 lspA; signal peptidase II [EC:3.4.23.36]" } ] }, { "name":"04141 Protein processing in endoplasmic reticulum", "children":[ { "name":"DDW44_00735 Hsp20\/alpha crystallin family protein\tK13993 HSP20; HSP20 family protein" }, { "name":"DDW44_29490 Hsp20\/alpha crystallin family protein\tK13993 HSP20; HSP20 family protein" } ] }, { "name":"04130 SNARE interactions in vesicular transport" }, { "name":"04120 Ubiquitin mediated proteolysis" }, { "name":"04122 Sulfur relay system [PATH:stir04122]", "children":[ { "name":"DDW44_04085 cysteine desulfurase\tK04487 iscS; cysteine desulfurase [EC:2.8.1.7]" }, { "name":"DDW44_21525 cysteine desulfurase\tK04487 iscS; cysteine desulfurase [EC:2.8.1.7]" }, { "name":"DDW44_06520 sulfurtransferase\tK01011 TST; thiosulfate\/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]" }, { "name":"DDW44_23555 sulfurtransferase\tK01011 TST; thiosulfate\/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]" }, { "name":"DDW44_21535 tRNA 2-thiouridine(34) synthase MnmA\tK00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]" }, { "name":"DDW44_20290 molybdenum cofactor biosynthesis protein MoaE\tK03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]" }, { "name":"DDW44_07560 GTP 3',8-cyclase MoaA\tK03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]" }, { "name":"DDW44_06540 molybdopterin synthase sulfur carrier subunit\tK03636 moaD; sulfur-carrier protein" }, { "name":"DDW44_09565 MoaD\/ThiS family protein\tK03636 moaD; sulfur-carrier protein" }, { "name":"DDW44_13775 MoaD\/ThiS family protein\tK03636 moaD; sulfur-carrier protein" }, { "name":"DDW44_20165 adenylyltransferase\/sulfurtransferase MoeZ\tK21147 moeZR; sulfur-carrier protein adenylyltransferase\/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-]" }, { "name":"DDW44_12415 moaC; cyclic pyranopterin monophosphate synthase MoaC\tK03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]" }, { "name":"DDW44_03860 thiS; thiamine biosynthesis protein ThiS\tK03154 thiS; sulfur carrier protein" }, { "name":"DDW44_09560 cysM; cysteine synthase B\tK21148 cysM; [CysO sulfur-carrier protein]-thiocarboxylate-dependent cysteine synthase [EC:2.5.1.113]" }, { "name":"DDW44_09575 peptidase\tK21140 mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6]" } ] }, { "name":"03050 Proteasome [PATH:stir03050]", "children":[ { "name":"DDW44_02265 arc; proteasome ATPase\tK13527 mpa; proteasome-associated ATPase" }, { "name":"DDW44_02245 prcA; proteasome subunit alpha\tK03432 psmA; proteasome alpha subunit [EC:3.4.25.1]" }, { "name":"DDW44_02250 prcB; proteasome subunit beta\tK03433 psmB; proteasome beta subunit [EC:3.4.25.1]" } ] }, { "name":"03018 RNA degradation [PATH:stir03018]", "children":[ { "name":"DDW44_08315 ribonuclease E\/G\tK08300 rne; ribonuclease E [EC:3.1.26.12]" }, { "name":"DDW44_11870 phosphopyruvate hydratase\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" }, { "name":"DDW44_22920 polyribonucleotide nucleotidyltransferase\tK00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]" }, { "name":"DDW44_23325 recombinase RecQ\tK03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]" }, { "name":"DDW44_20970 transcription termination factor Rho\tK03628 rho; transcription termination factor Rho" }, { "name":"DDW44_22960 RNase J family beta-CASP ribonuclease\tK12574 rnj; ribonuclease J [EC:3.1.-.-]" }, { "name":"DDW44_05325 molecular chaperone DnaK\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"DDW44_28075 hypothetical protein\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"DDW44_13765 groL; chaperonin GroEL\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"DDW44_18285 groL; chaperonin GroEL\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"DDW44_06595 RNA degradosome polyphosphate kinase\tK00937 ppk1; polyphosphate kinase [EC:2.7.4.1]" }, { "name":"DDW44_29155 ppk2; polyphosphate kinase 2\tK22468 ppk2; polyphosphate kinase [EC:2.7.4.34]" }, { "name":"DDW44_14990 CCA tRNA nucleotidyltransferase\tK00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]" } ] } ] }, { "name":"09124 Replication and repair", "children":[ { "name":"03030 DNA replication [PATH:stir03030]", "children":[ { "name":"DDW44_07610 DEDDh family exonuclease\tK02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]" }, { "name":"DDW44_11660 3'-5' exonuclease\tK02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]" }, { "name":"DDW44_24710 DNA polymerase III subunit epsilon\tK02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]" }, { "name":"DDW44_03565 DNA polymerase III subunit alpha\tK02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]" }, { "name":"DDW44_16475 DNA polymerase III subunit delta'\tK02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]" }, { "name":"DDW44_08110 holA; DNA polymerase III subunit delta\tK02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]" }, { "name":"DDW44_15090 DNA polymerase III subunit beta\tK02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]" }, { "name":"DDW44_14920 dnaB; replicative DNA helicase\tK02314 dnaB; replicative DNA helicase [EC:5.6.2.3]" }, { "name":"DDW44_07750 DNA primase\tK02316 dnaG; DNA primase [EC:2.7.7.101]" }, { "name":"DDW44_14940 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"DDW44_04700 bifunctional RNase H\/acid phosphatase\tK22316 rhnA-cobC; ribonuclease H \/ adenosylcobalamin\/alpha-ribazole phosphatase [EC:3.1.26.4 3.1.3.73]" }, { "name":"DDW44_23310 ribonuclease HII\tK03470 rnhB; ribonuclease HII [EC:3.1.26.4]" }, { "name":"DDW44_03180 DNA polymerase I\tK02335 polA; DNA polymerase I [EC:2.7.7.7]" }, { "name":"DDW44_21560 NAD-dependent DNA ligase LigA\tK01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]" } ] }, { "name":"03410 Base excision repair [PATH:stir03410]", "children":[ { "name":"DDW44_16330 nth; endonuclease III\tK10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]" }, { "name":"DDW44_01510 uracil-DNA glycosylase\tK03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]" }, { "name":"DDW44_10770 uracil-DNA glycosylase\tK03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]" }, { "name":"DDW44_16985 adenine glycosylase\tK03575 mutY; A\/G-specific adenine glycosylase [EC:3.2.2.31]" }, { "name":"DDW44_07375 DNA-3-methyladenine glycosylase\tK03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]" }, { "name":"DDW44_22110 DNA-formamidopyrimidine glycosylase\tK10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]" }, { "name":"DDW44_28310 endonuclease VIII\tK10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]" }, { "name":"DDW44_08440 DNA glycosylase\tK05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]" }, { "name":"DDW44_23030 DNA glycosylase\tK05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]" }, { "name":"DDW44_26270 DNA-3-methyladenine glycosylase\tK13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response \/ DNA-3-methyladenine glycosylase II [EC:3.2.2.21]" }, { "name":"DDW44_19990 DNA-3-methyladenine glycosylase I\tK01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]" }, { "name":"DDW44_10540 G\/U mismatch-specific DNA glycosylase\tK03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]" }, { "name":"DDW44_29465 uracil-DNA glycosylase\tK21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]" }, { "name":"DDW44_12345 xth; exodeoxyribonuclease III\tK01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]" }, { "name":"DDW44_26125 xth; exodeoxyribonuclease III\tK01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]" }, { "name":"DDW44_03875 deoxyribonuclease IV\tK01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]" }, { "name":"DDW44_03180 DNA polymerase I\tK02335 polA; DNA polymerase I [EC:2.7.7.7]" }, { "name":"DDW44_21560 NAD-dependent DNA ligase LigA\tK01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]" } ] }, { "name":"03420 Nucleotide excision repair [PATH:stir03420]", "children":[ { "name":"DDW44_11970 mfd; transcription-repair coupling factor\tK03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]" }, { "name":"DDW44_02995 excinuclease ABC subunit A\tK03701 uvrA; excinuclease ABC subunit A" }, { "name":"DDW44_21720 ABC transporter\tK03701 uvrA; excinuclease ABC subunit A" }, { "name":"DDW44_03030 excinuclease ABC subunit B\tK03702 uvrB; excinuclease ABC subunit B" }, { "name":"DDW44_02970 excinuclease ABC subunit UvrC\tK03703 uvrC; excinuclease ABC subunit C" }, { "name":"DDW44_18440 pcrA; DNA helicase PcrA\tK03657 uvrD; ATP-dependent DNA helicase UvrD\/PcrA [EC:5.6.2.4]" }, { "name":"DDW44_20200 ATP-dependent DNA helicase\tK03657 uvrD; ATP-dependent DNA helicase UvrD\/PcrA [EC:5.6.2.4]" }, { "name":"DDW44_20220 ATP-dependent DNA helicase\tK03657 uvrD; ATP-dependent DNA helicase UvrD\/PcrA [EC:5.6.2.4]" }, { "name":"DDW44_03180 DNA polymerase I\tK02335 polA; DNA polymerase I [EC:2.7.7.7]" }, { "name":"DDW44_21560 NAD-dependent DNA ligase LigA\tK01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]" }, { "name":"DDW44_13645 helicase\tK10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]" } ] }, { "name":"03430 Mismatch repair [PATH:stir03430]", "children":[ { "name":"DDW44_18440 pcrA; DNA helicase PcrA\tK03657 uvrD; ATP-dependent DNA helicase UvrD\/PcrA [EC:5.6.2.4]" }, { "name":"DDW44_20200 ATP-dependent DNA helicase\tK03657 uvrD; ATP-dependent DNA helicase UvrD\/PcrA [EC:5.6.2.4]" }, { "name":"DDW44_20220 ATP-dependent DNA helicase\tK03657 uvrD; ATP-dependent DNA helicase UvrD\/PcrA [EC:5.6.2.4]" }, { "name":"DDW44_19655 exodeoxyribonuclease VII large subunit\tK03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]" }, { "name":"DDW44_19650 exodeoxyribonuclease VII small subunit\tK03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]" }, { "name":"DDW44_14940 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"DDW44_03565 DNA polymerase III subunit alpha\tK02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]" }, { "name":"DDW44_15090 DNA polymerase III subunit beta\tK02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]" }, { "name":"DDW44_08110 holA; DNA polymerase III subunit delta\tK02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]" }, { "name":"DDW44_16475 DNA polymerase III subunit delta'\tK02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]" }, { "name":"DDW44_07610 DEDDh family exonuclease\tK02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]" }, { "name":"DDW44_11660 3'-5' exonuclease\tK02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]" }, { "name":"DDW44_24710 DNA polymerase III subunit epsilon\tK02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]" }, { "name":"DDW44_21560 NAD-dependent DNA ligase LigA\tK01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]" } ] }, { "name":"03440 Homologous recombination [PATH:stir03440]", "children":[ { "name":"DDW44_14940 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"DDW44_15100 DNA replication\/repair protein RecF\tK03629 recF; DNA replication and repair protein RecF" }, { "name":"DDW44_07935 DNA repair protein RecO\tK03584 recO; DNA repair protein RecO (recombination protein O)" }, { "name":"DDW44_15960 recombination protein RecR\tK06187 recR; recombination protein RecR" }, { "name":"DDW44_23070 recA; recombinase RecA\tK03553 recA; recombination protein RecA" }, { "name":"DDW44_03180 DNA polymerase I\tK02335 polA; DNA polymerase I [EC:2.7.7.7]" }, { "name":"DDW44_11580 Holliday junction branch migration protein RuvA\tK03550 ruvA; holliday junction DNA helicase RuvA" }, { "name":"DDW44_11575 Holliday junction branch migration DNA helicase RuvB\tK03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]" }, { "name":"DDW44_11585 crossover junction endodeoxyribonuclease RuvC\tK01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]" }, { "name":"DDW44_22075 DNA helicase RecG\tK03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]" }, { "name":"DDW44_08800 ATP-dependent RecD-like DNA helicase\tK03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]" }, { "name":"DDW44_03565 DNA polymerase III subunit alpha\tK02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]" }, { "name":"DDW44_15090 DNA polymerase III subunit beta\tK02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]" }, { "name":"DDW44_08110 holA; DNA polymerase III subunit delta\tK02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]" }, { "name":"DDW44_16475 DNA polymerase III subunit delta'\tK02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]" }, { "name":"DDW44_07610 DEDDh family exonuclease\tK02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]" }, { "name":"DDW44_11660 3'-5' exonuclease\tK02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]" }, { "name":"DDW44_24710 DNA polymerase III subunit epsilon\tK02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]" }, { "name":"DDW44_11360 primosome assembly protein PriA\tK04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]" } ] }, { "name":"03450 Non-homologous end-joining [PATH:stir03450]", "children":[ { "name":"DDW44_20830 Ku protein\tK10979 ku; DNA end-binding protein Ku" }, { "name":"DDW44_30955 Ku protein\tK10979 ku; DNA end-binding protein Ku" }, { "name":"DDW44_20825 ATP-dependent DNA ligase\tK01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]" }, { "name":"DDW44_29360 ATP-dependent DNA ligase\tK01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]" } ] }, { "name":"03460 Fanconi anemia pathway" } ] }, { "name":"09126 Chromosome", "children":[ { "name":"03082 ATP-dependent chromatin remodeling" }, { "name":"03083 Polycomb repressive complex" } ] }, { "name":"09125 Information processing in viruses", "children":[ { "name":"03230 Viral genome structure" }, { "name":"03240 Viral replication" }, { "name":"03250 Viral life cycle - HIV-1 [PATH:stir03250]", "children":[ { "name":"DDW44_15255 peptidylprolyl isomerase\tK03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]" } ] }, { "name":"03260 Virion - Human immunodeficiency virus" }, { "name":"03271 Virion - Rotavirus" }, { "name":"03262 Virion - Coronavirus" }, { "name":"03261 Virion - Influenza virus" }, { "name":"03263 Virion - Enterovirus" }, { "name":"03264 Virion - Flavivirus and Alphavirus" }, { "name":"03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus" }, { "name":"03273 Virion - Lassa virus and SFTS virus" }, { "name":"03272 Virion - Hepatitis viruses", "children":[ { "name":"DDW44_19910 S9 family peptidase\tK01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]" } ] }, { "name":"03266 Virion - Herpesvirus" }, { "name":"03268 Virion - Orthopoxvirus" }, { "name":"03267 Virion - Adenovirus" }, { "name":"03259 Virion - Bacteriophages T4 and T7" }, { "name":"03258 Virion - Bacteriophage lambda" } ] } ] }, { "name":"09130 Environmental Information Processing", "children":[ { "name":"09131 Membrane transport", "children":[ { "name":"02010 ABC transporters [PATH:stir02010]", "children":[ { "name":"DDW44_23715 ABC transporter substrate-binding protein\tK15553 ssuA; sulfonate transport system substrate-binding protein" }, { "name":"DDW44_24755 sulfate ABC transporter substrate-binding protein\tK15553 ssuA; sulfonate transport system substrate-binding protein" }, { "name":"DDW44_23710 ABC transporter permease\tK15554 ssuC; sulfonate transport system permease protein" }, { "name":"DDW44_24745 ABC transporter permease\tK15554 ssuC; sulfonate transport system permease protein" }, { "name":"DDW44_23705 ABC transporter ATP-binding protein\tK15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]" }, { "name":"DDW44_24750 ABC transporter ATP-binding protein\tK15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]" }, { "name":"DDW44_17240 iron ABC transporter substrate-binding protein\tK02012 afuA; iron(III) transport system substrate-binding protein" }, { "name":"DDW44_17235 iron ABC transporter permease\tK02011 afuB; iron(III) transport system permease protein" }, { "name":"DDW44_17230 ABC transporter ATP-binding protein\tK02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]" }, { "name":"DDW44_22320 thiamine ABC transporter substrate-binding protein\tK02064 thiB; thiamine transport system substrate-binding protein" }, { "name":"DDW44_22325 iron ABC transporter permease\tK02063 thiP; thiamine transport system permease protein" }, { "name":"DDW44_22330 iron ABC transporter ATP-binding protein\tK02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]" }, { "name":"DDW44_00245 ABC transporter substrate-binding protein\tK11069 potD; spermidine\/putrescine transport system substrate-binding protein" }, { "name":"DDW44_22360 polyamine ABC transporter substrate-binding protein\tK11069 potD; spermidine\/putrescine transport system substrate-binding protein" }, { "name":"DDW44_22390 ABC transporter substrate-binding protein\tK11069 potD; spermidine\/putrescine transport system substrate-binding protein" }, { "name":"DDW44_00235 ABC transporter permease\tK11070 potC; spermidine\/putrescine transport system permease protein" }, { "name":"DDW44_22405 ABC transporter permease\tK11070 potC; spermidine\/putrescine transport system permease protein" }, { "name":"DDW44_00240 ABC transporter permease\tK11071 potB; spermidine\/putrescine transport system permease protein" }, { "name":"DDW44_22400 ABC transporter permease\tK11071 potB; spermidine\/putrescine transport system permease protein" }, { "name":"DDW44_00230 spermidine\/putrescine ABC transporter ATP-binding protein\tK11072 potA; spermidine\/putrescine transport system ATP-binding protein [EC:7.6.2.11]" }, { "name":"DDW44_22395 ABC transporter ATP-binding protein\tK11072 potA; spermidine\/putrescine transport system ATP-binding protein [EC:7.6.2.11]" }, { "name":"DDW44_02155 glycine\/betaine ABC transporter permease\tK02001 proW; glycine betaine\/proline transport system permease protein" }, { "name":"DDW44_18590 glycine\/betaine ABC transporter substrate-binding protein\tK02002 proX; glycine betaine\/proline transport system substrate-binding protein" }, { "name":"DDW44_18585 glycine\/betaine ABC transporter permease\tK02001 proW; glycine betaine\/proline transport system permease protein" }, { "name":"DDW44_02160 glycine\/betaine ABC transporter ATP-binding protein\tK02000 proV; glycine betaine\/proline transport system ATP-binding protein [EC:7.6.2.9]" }, { "name":"DDW44_18580 glycine\/betaine ABC transporter ATP-binding protein\tK02000 proV; glycine betaine\/proline transport system ATP-binding protein [EC:7.6.2.9]" }, { "name":"DDW44_16835 amino acid ABC transporter substrate-binding protein\tK05845 opuC; osmoprotectant transport system substrate-binding protein" }, { "name":"DDW44_29005 ABC transporter substrate-binding protein\tK05845 opuC; osmoprotectant transport system substrate-binding protein" }, { "name":"DDW44_16825 ABC transporter permease\tK05846 opuBD; osmoprotectant transport system permease protein" }, { "name":"DDW44_16830 ABC transporter permease\tK05846 opuBD; osmoprotectant transport system permease protein" }, { "name":"DDW44_28995 ABC transporter permease\tK05846 opuBD; osmoprotectant transport system permease protein" }, { "name":"DDW44_29000 ABC transporter permease\tK05846 opuBD; osmoprotectant transport system permease protein" }, { "name":"DDW44_16820 ABC transporter ATP-binding protein\tK05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]" }, { "name":"DDW44_29010 ABC transporter ATP-binding protein\tK05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]" }, { "name":"DDW44_14040 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC\tK10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]" }, { "name":"DDW44_04420 sugar ABC transporter substrate-binding protein\tK15770 cycB; arabinogalactan oligomer \/ maltooligosaccharide transport system substrate-binding protein" }, { "name":"DDW44_04415 sugar ABC transporter permease\tK15771 ganP; arabinogalactan oligomer \/ maltooligosaccharide transport system permease protein" }, { "name":"DDW44_04410 ABC transporter permease\tK15772 ganQ; arabinogalactan oligomer \/ maltooligosaccharide transport system permease protein" }, { "name":"DDW44_01065 carbohydrate ABC transporter substrate-binding protein\tK10232 aglE; alpha-glucoside transport system substrate-binding protein" }, { "name":"DDW44_09970 sugar ABC transporter substrate-binding protein\tK10232 aglE; alpha-glucoside transport system substrate-binding protein" }, { "name":"DDW44_01070 ABC transporter permease\tK10233 aglF; alpha-glucoside transport system permease protein" }, { "name":"DDW44_09975 ABC transporter permease\tK10233 aglF; alpha-glucoside transport system permease protein" }, { "name":"DDW44_01075 carbohydrate ABC transporter permease\tK10234 aglG; alpha-glucoside transport system permease protein" }, { "name":"DDW44_09980 sugar ABC transporter permease\tK10234 aglG; alpha-glucoside transport system permease protein" }, { "name":"DDW44_00120 ABC transporter substrate-binding protein\tK10236 thuE; trehalose\/maltose transport system substrate-binding protein" }, { "name":"DDW44_01055 ABC transporter substrate-binding protein\tK10236 thuE; trehalose\/maltose transport system substrate-binding protein" }, { "name":"DDW44_24375 ngcE; carbohydrate ABC transporter, N-acetylglucosamine\/diacetylchitobiose-binding protein\tK10200 ngcE; N-acetylglucosamine transport system substrate-binding protein" }, { "name":"DDW44_24380 ABC transporter permease\tK10201 ngcF; N-acetylglucosamine transport system permease protein" }, { "name":"DDW44_24385 carbohydrate ABC transporter permease\tK10202 ngcG; N-acetylglucosamine transport system permease protein" }, { "name":"DDW44_09090 carbohydrate ABC transporter substrate-binding protein\tK10240 cebE; cellobiose transport system substrate-binding protein" }, { "name":"DDW44_09095 ABC transporter permease\tK10241 cebF; cellobiose transport system permease protein" }, { "name":"DDW44_09100 sugar ABC transporter permease\tK10242 cebG; cellobiose transport system permease protein" }, { "name":"DDW44_20465 sugar ABC transporter substrate-binding protein\tK17329 dasA; N,N'-diacetylchitobiose transport system substrate-binding protein" }, { "name":"DDW44_20470 sugar ABC transporter permease\tK17330 dasB; N,N'-diacetylchitobiose transport system permease protein" }, { "name":"DDW44_20475 sugar ABC transporter permease\tK17331 dasC; N,N'-diacetylchitobiose transport system permease protein" }, { "name":"DDW44_01225 ABC transporter substrate-binding protein\tK17244 chiE; putative chitobiose transport system substrate-binding protein" }, { "name":"DDW44_01220 ABC transporter permease\tK17245 chiF; putative chitobiose transport system permease protein" }, { "name":"DDW44_01215 ABC transporter permease\tK17246 chiG; putative chitobiose transport system permease protein" }, { "name":"DDW44_25690 ABC transporter substrate-binding protein\tK02067 mlaD; phospholipid\/cholesterol\/gamma-HCH transport system substrate-binding protein" }, { "name":"DDW44_25695 mammalian cell entry protein\tK02067 mlaD; phospholipid\/cholesterol\/gamma-HCH transport system substrate-binding protein" }, { "name":"DDW44_25700 mammalian cell entry protein\tK02067 mlaD; phospholipid\/cholesterol\/gamma-HCH transport system substrate-binding protein" }, { "name":"DDW44_25705 MCE family protein\tK02067 mlaD; phospholipid\/cholesterol\/gamma-HCH transport system substrate-binding protein" }, { "name":"DDW44_25710 MCE family protein\tK02067 mlaD; phospholipid\/cholesterol\/gamma-HCH transport system substrate-binding protein" }, { "name":"DDW44_25715 mammalian cell entry protein\tK02067 mlaD; phospholipid\/cholesterol\/gamma-HCH transport system substrate-binding protein" }, { "name":"DDW44_25720 ABC transporter permease\tK02066 mlaE; phospholipid\/cholesterol\/gamma-HCH transport system permease protein" }, { "name":"DDW44_25725 ABC transporter permease\tK02066 mlaE; phospholipid\/cholesterol\/gamma-HCH transport system permease protein" }, { "name":"DDW44_25730 ABC transporter ATP-binding protein\tK02065 mlaF; phospholipid\/cholesterol\/gamma-HCH transport system ATP-binding protein" }, { "name":"DDW44_18860 BMP family ABC transporter substrate-binding protein\tK07335 bmpA; basic membrane protein A and related proteins" }, { "name":"DDW44_18870 sugar ABC transporter permease\tK23535 nupB; general nucleoside transport system permease protein" }, { "name":"DDW44_18875 ABC transporter permease\tK23536 nupC; general nucleoside transport system permease protein" }, { "name":"DDW44_18865 ABC transporter ATP-binding protein\tK23537 nupA; general nucleoside transport system ATP-binding protein" }, { "name":"DDW44_30295 transporter\tK10439 rbsB; ribose transport system substrate-binding protein" }, { "name":"DDW44_30290 sugar ABC transporter ATP-binding protein\tK10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]" }, { "name":"DDW44_30305 D-ribose pyranase\tK06726 rbsD; D-ribose pyranase [EC:5.4.99.62]" }, { "name":"DDW44_24395 ABC transporter substrate-binding protein\tK10543 xylF; D-xylose transport system substrate-binding protein" }, { "name":"DDW44_29125 ABC transporter substrate-binding protein\tK10543 xylF; D-xylose transport system substrate-binding protein" }, { "name":"DDW44_24405 ABC transporter permease\tK10544 xylH; D-xylose transport system permease protein" }, { "name":"DDW44_29115 ABC transporter permease\tK10544 xylH; D-xylose transport system permease protein" }, { "name":"DDW44_24400 sugar ABC transporter ATP-binding protein\tK10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]" }, { "name":"DDW44_29120 sugar ABC transporter ATP-binding protein\tK10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]" }, { "name":"DDW44_30090 ABC transporter ATP-binding protein\tK17324 glpS; glycerol transport system ATP-binding protein" }, { "name":"DDW44_30085 ABC transporter ATP-binding protein\tK17325 glpT; glycerol transport system ATP-binding protein" }, { "name":"DDW44_31275 phosphate ABC transporter\tK05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein" }, { "name":"DDW44_05170 phosphate ABC transporter substrate-binding protein PstS family protein\tK02040 pstS; phosphate transport system substrate-binding protein" }, { "name":"DDW44_06610 pstS; phosphate ABC transporter substrate-binding protein PstS\tK02040 pstS; phosphate transport system substrate-binding protein" }, { "name":"DDW44_05165 pstC; phosphate ABC transporter permease subunit PstC\tK02037 pstC; phosphate transport system permease protein" }, { "name":"DDW44_06615 pstC; phosphate ABC transporter permease subunit PstC\tK02037 pstC; phosphate transport system permease protein" }, { "name":"DDW44_05160 pstA; phosphate ABC transporter permease PtsA\tK02038 pstA; phosphate transport system permease protein" }, { "name":"DDW44_06620 pstA; phosphate ABC transporter permease PtsA\tK02038 pstA; phosphate transport system permease protein" }, { "name":"DDW44_05155 pstB; phosphate ABC transporter ATP-binding protein\tK02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]" }, { "name":"DDW44_06625 phosphate ABC transporter ATP-binding protein\tK02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]" }, { "name":"DDW44_01105 glutamate-binding protein\tK10005 gluB; glutamate transport system substrate-binding protein" }, { "name":"DDW44_23160 glutamate-binding protein\tK10005 gluB; glutamate transport system substrate-binding protein" }, { "name":"DDW44_01100 glutamate ABC transporter permease\tK10006 gluC; glutamate transport system permease protein" }, { "name":"DDW44_23155 amino acid ABC transporter permease\tK10006 gluC; glutamate transport system permease protein" }, { "name":"DDW44_01095 amino acid ABC transporter permease\tK10007 gluD; glutamate transport system permease protein" }, { "name":"DDW44_23150 amino acid ABC transporter permease\tK10007 gluD; glutamate transport system permease protein" }, { "name":"DDW44_01110 amino acid ABC transporter ATP-binding protein\tK10008 gluA; glutamate transport system ATP-binding protein [EC:7.4.2.1]" }, { "name":"DDW44_23165 amino acid ABC transporter ATP-binding protein\tK10008 gluA; glutamate transport system ATP-binding protein [EC:7.4.2.1]" }, { "name":"DDW44_03200 branched-chain amino acid ABC transporter substrate-binding protein\tK01999 livK; branched-chain amino acid transport system substrate-binding protein" }, { "name":"DDW44_13325 hypothetical protein\tK01999 livK; branched-chain amino acid transport system substrate-binding protein" }, { "name":"DDW44_03205 branched-chain amino acid ABC transporter permease\tK01997 livH; branched-chain amino acid transport system permease protein" }, { "name":"DDW44_25560 branched-chain amino acid ABC transporter permease\tK01997 livH; branched-chain amino acid transport system permease protein" }, { "name":"DDW44_03210 branched-chain amino acid ABC transporter permease\tK01998 livM; branched-chain amino acid transport system permease protein" }, { "name":"DDW44_25565 branched-chain amino acid ABC transporter permease\tK01998 livM; branched-chain amino acid transport system permease protein" }, { "name":"DDW44_03215 ABC transporter ATP-binding protein\tK01995 livG; branched-chain amino acid transport system ATP-binding protein" }, { "name":"DDW44_25555 ABC transporter ATP-binding protein\tK01995 livG; branched-chain amino acid transport system ATP-binding protein" }, { "name":"DDW44_03220 ABC transporter ATP-binding protein\tK01996 livF; branched-chain amino acid transport system ATP-binding protein" }, { "name":"DDW44_25550 ABC transporter ATP-binding protein\tK01996 livF; branched-chain amino acid transport system ATP-binding protein" }, { "name":"DDW44_01860 metal ABC transporter substrate-binding protein\tK02073 metQ; D-methionine transport system substrate-binding protein" }, { "name":"DDW44_01865 ABC transporter permease\tK02072 metI; D-methionine transport system permease protein" }, { "name":"DDW44_01870 methionine ABC transporter ATP-binding protein\tK02071 metN; D-methionine transport system ATP-binding protein" }, { "name":"DDW44_19845 ABC transporter substrate-binding protein\tK15580 oppA; oligopeptide transport system substrate-binding protein" }, { "name":"DDW44_19870 peptide ABC transporter substrate-binding protein\tK15580 oppA; oligopeptide transport system substrate-binding protein" }, { "name":"DDW44_19850 ABC transporter permease\tK15581 oppB; oligopeptide transport system permease protein" }, { "name":"DDW44_19875 ABC transporter permease\tK15581 oppB; oligopeptide transport system permease protein" }, { "name":"DDW44_19855 ABC transporter permease\tK15582 oppC; oligopeptide transport system permease protein" }, { "name":"DDW44_19880 ABC transporter permease\tK15582 oppC; oligopeptide transport system permease protein" }, { "name":"DDW44_19860 ABC transporter ATP-binding protein\tK15583 oppD; oligopeptide transport system ATP-binding protein" }, { "name":"DDW44_19885 ABC transporter ATP-binding protein\tK15583 oppD; oligopeptide transport system ATP-binding protein" }, { "name":"DDW44_19865 dipeptide ABC transporter ATP-binding protein\tK10823 oppF; oligopeptide transport system ATP-binding protein" }, { "name":"DDW44_19890 peptide ABC transporter ATP-binding protein\tK10823 oppF; oligopeptide transport system ATP-binding protein" }, { "name":"DDW44_08985 ABC transporter substrate-binding protein\tK25287 desE; iron-desferrioxamine transport system substrate-binding protein" }, { "name":"DDW44_15855 ABC transporter substrate-binding protein\tK25287 desE; iron-desferrioxamine transport system substrate-binding protein" }, { "name":"DDW44_07335 iron ABC transporter permease\tK23186 fepD; iron-siderophore transport system permease protein" }, { "name":"DDW44_07330 hypothetical protein\tK23187 fepG; iron-siderophore transport system permease protein" }, { "name":"DDW44_07325 ABC transporter ATP-binding protein\tK23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]" }, { "name":"DDW44_28575 ABC transporter substrate-binding protein\tK23227 fhuD; ferric hydroxamate transport system substrate-binding protein" }, { "name":"DDW44_28570 ABC transporter permease\tK23228 fhuB; ferric hydroxamate transport system permease protein" }, { "name":"DDW44_28580 fecE; Fe(3+)-dicitrate ABC transporter ATP-binding protein\tK10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]" }, { "name":"DDW44_07910 zinc ABC transporter substrate-binding protein\tK09815 znuA; zinc transport system substrate-binding protein" }, { "name":"DDW44_07920 ABC transporter\tK09816 znuB; zinc transport system permease protein" }, { "name":"DDW44_07915 metal ABC transporter ATP-binding protein\tK09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]" }, { "name":"DDW44_15805 energy-coupling factor ABC transporter substrate-binding protein\tK02009 cbiN; cobalt\/nickel transport protein" }, { "name":"DDW44_12295 cobalt ABC transporter permease\tK02007 cbiM; cobalt\/nickel transport system permease protein" }, { "name":"DDW44_15800 energy-coupling factor ABC transporter permease\tK02007 cbiM; cobalt\/nickel transport system permease protein" }, { "name":"DDW44_12290 cbiQ; cobalt ECF transporter T component CbiQ\tK02008 cbiQ; cobalt\/nickel transport system permease protein" }, { "name":"DDW44_15810 cbiQ; cobalt ECF transporter T component CbiQ\tK02008 cbiQ; cobalt\/nickel transport system permease protein" }, { "name":"DDW44_12285 ABC transporter ATP-binding protein\tK02006 cbiO; cobalt\/nickel transport system ATP-binding protein" }, { "name":"DDW44_15815 cobalt ABC transporter\tK02006 cbiO; cobalt\/nickel transport system ATP-binding protein" }, { "name":"DDW44_08450 biotin transporter BioY\tK03523 bioY; biotin transport system substrate-specific component" }, { "name":"DDW44_05590 cobalt ABC transporter permease\tK16785 ecfT; energy-coupling factor transport system permease protein" }, { "name":"DDW44_10000 ABC transporter\tK09692 tagG; teichoic acid transport system permease protein" }, { "name":"DDW44_27230 ABC transporter\tK09692 tagG; teichoic acid transport system permease protein" }, { "name":"DDW44_10005 teichoic acid ABC transporter ATP-binding protein\tK09693 tagH; teichoic acid transport system ATP-binding protein [EC:7.5.2.4]" }, { "name":"DDW44_27235 ABC transporter ATP-binding protein\tK09693 tagH; teichoic acid transport system ATP-binding protein [EC:7.5.2.4]" }, { "name":"DDW44_09860 ABC transporter permease\tK09811 ftsX; cell division transport system permease protein" }, { "name":"DDW44_09865 ftsE; cell division ATP-binding protein FtsE\tK09812 ftsE; cell division transport system ATP-binding protein" }, { "name":"DDW44_06355 multidrug ABC transporter ATP-binding protein\tK18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump" }, { "name":"DDW44_06360 multidrug ABC transporter ATP-binding protein\tK18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump" }, { "name":"DDW44_14800 ABC transporter\tK16014 cydCD; ATP-binding cassette, subfamily C, bacterial CydCD" } ] }, { "name":"02060 Phosphotransferase system (PTS) [PATH:stir02060]", "children":[ { "name":"DDW44_10955 ptsP; phosphoenolpyruvate--protein phosphotransferase\tK08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]" }, { "name":"DDW44_23415 HPr family phosphocarrier protein\tK02784 ptsH; phosphocarrier protein HPr" }, { "name":"DDW44_10950 phosphoenolpyruvate--carbohydrate phosphotransferase\tK02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]" }, { "name":"DDW44_09530 PTS lactose transporter subunit IIC\tK02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]" }, { "name":"DDW44_09535 PTS lactose transporter subunit IIC\tK02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]" }, { "name":"DDW44_12540 hypothetical protein\tK02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]" }, { "name":"DDW44_12545 pfkB; 1-phosphofructokinase\tK00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]" } ] }, { "name":"03070 Bacterial secretion system [PATH:stir03070]", "children":[ { "name":"DDW44_11565 secD; protein translocase subunit SecD\tK03072 secD; preprotein translocase subunit SecD" }, { "name":"DDW44_12635 protein translocase subunit SecD\tK12257 secDF; SecD\/SecF fusion protein" }, { "name":"DDW44_11560 protein translocase subunit SecF\tK03074 secF; preprotein translocase subunit SecF" }, { "name":"DDW44_17900 preprotein translocase subunit SecE\tK03073 secE; preprotein translocase subunit SecE" }, { "name":"DDW44_02930 preprotein translocase subunit SecG\tK03075 secG; preprotein translocase subunit SecG" }, { "name":"DDW44_18100 preprotein translocase subunit SecY\tK03076 secY; preprotein translocase subunit SecY" }, { "name":"DDW44_11570 yajC; preprotein translocase subunit YajC\tK03210 yajC; preprotein translocase subunit YajC" }, { "name":"DDW44_09400 hypothetical protein\tK03217 yidC; YidC\/Oxa1 family membrane protein insertase" }, { "name":"DDW44_15055 membrane protein insertase YidC\tK03217 yidC; YidC\/Oxa1 family membrane protein insertase" }, { "name":"DDW44_10050 preprotein translocase subunit SecA\tK03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]" }, { "name":"DDW44_22140 signal recognition particle-docking protein FtsY\tK03110 ftsY; fused signal recognition particle receptor" }, { "name":"DDW44_22170 signal recognition particle protein\tK03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]" }, { "name":"DDW44_00365 hypothetical protein\tK03116 tatA; sec-independent protein translocase protein TatA" }, { "name":"DDW44_02195 twin-arginine translocase TatA\/TatE family subunit\tK03116 tatA; sec-independent protein translocase protein TatA" }, { "name":"DDW44_13200 twin-arginine translocase TatA\/TatE family subunit\tK03116 tatA; sec-independent protein translocase protein TatA" }, { "name":"DDW44_13195 hypothetical protein\tK03117 tatB; sec-independent protein translocase protein TatB" }, { "name":"DDW44_20025 Sec-independent protein translocase TatB\tK03117 tatB; sec-independent protein translocase protein TatB" }, { "name":"DDW44_02190 tatC; twin-arginine translocase subunit TatC\tK03118 tatC; sec-independent protein translocase protein TatC" } ] } ] }, { "name":"09132 Signal transduction", "children":[ { "name":"02020 Two-component system [PATH:stir02020]", "children":[ { "name":"DDW44_03585 alkaline phosphatase\tK01113 phoD; alkaline phosphatase D [EC:3.1.3.1]" }, { "name":"DDW44_04605 alkaline phosphatase\tK01113 phoD; alkaline phosphatase D [EC:3.1.3.1]" }, { "name":"DDW44_05575 alkaline phosphatase\tK01113 phoD; alkaline phosphatase D [EC:3.1.3.1]" }, { "name":"DDW44_10575 alkaline phosphatase\tK01113 phoD; alkaline phosphatase D [EC:3.1.3.1]" }, { "name":"DDW44_14110 two-component sensor histidine kinase\tK07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]" }, { "name":"DDW44_14105 DNA-binding response regulator\tK07776 regX3; two-component system, OmpR family, response regulator RegX3" }, { "name":"DDW44_05170 phosphate ABC transporter substrate-binding protein PstS family protein\tK02040 pstS; phosphate transport system substrate-binding protein" }, { "name":"DDW44_06610 pstS; phosphate ABC transporter substrate-binding protein PstS\tK02040 pstS; phosphate transport system substrate-binding protein" }, { "name":"DDW44_25765 uraH; hydroxyisourate hydrolase\tK07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]" }, { "name":"DDW44_22260 RNA polymerase sigma factor WhiG\tK02405 fliA; RNA polymerase sigma factor FliA" }, { "name":"DDW44_23630 histidine kinase\tK07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]" }, { "name":"DDW44_23635 DNA-binding response regulator\tK07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE" }, { "name":"DDW44_25355 potassium-transporting ATPase subunit KdpA\tK01546 kdpA; potassium-transporting ATPase potassium-binding subunit" }, { "name":"DDW44_25350 kdpB; K(+)-transporting ATPase subunit B\tK01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6]" }, { "name":"DDW44_25345 potassium-transporting ATPase subunit C\tK01548 kdpC; potassium-transporting ATPase KdpC subunit" }, { "name":"DDW44_06965 tripartite tricarboxylate transporter TctA\tK07793 tctA; putative tricarboxylic transport membrane protein" }, { "name":"DDW44_06970 hypothetical protein\tK07794 tctB; putative tricarboxylic transport membrane protein" }, { "name":"DDW44_06975 tripartite tricarboxylate transporter substrate binding protein\tK07795 tctC; putative tricarboxylic transport membrane protein" }, { "name":"DDW44_02855 cytochrome B\tK02259 COX15; heme a synthase [EC:1.17.99.9]" }, { "name":"DDW44_06570 two-component sensor histidine kinase\tK07653 mprB; two-component system, OmpR family, sensor histidine kinase MprB [EC:2.7.13.3]" }, { "name":"DDW44_06565 DNA-binding response regulator\tK07669 mprA; two-component system, OmpR family, response regulator MprA" }, { "name":"DDW44_06560 serine protease\tK08372 pepD; putative serine protease PepD [EC:3.4.21.-]" }, { "name":"DDW44_14645 protease\tK08372 pepD; putative serine protease PepD [EC:3.4.21.-]" }, { "name":"DDW44_20020 protease\tK08372 pepD; putative serine protease PepD [EC:3.4.21.-]" }, { "name":"DDW44_10085 two-component sensor histidine kinase\tK07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]" }, { "name":"DDW44_18950 two-component sensor histidine kinase\tK07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]" }, { "name":"DDW44_10090 DNA-binding response regulator\tK07670 mtrA; two-component system, OmpR family, response regulator MtrA" }, { "name":"DDW44_15080 chromosomal replication initiator protein DnaA\tK02313 dnaA; chromosomal replication initiator protein" }, { "name":"DDW44_04310 two-component sensor histidine kinase\tK07655 prrB; two-component system, OmpR family, sensor histidine kinase PrrB [EC:2.7.13.3]" }, { "name":"DDW44_04315 DNA-binding response regulator\tK07671 prrA; two-component system, OmpR family, response regulator PrrA" }, { "name":"DDW44_10980 D-alanyl-D-alanine dipeptidase\tK08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]" }, { "name":"DDW44_04505 hypothetical protein\tK18353 vanJ; vancomycin resistance protein VanJ" }, { "name":"DDW44_30835 bacteriocin biosynthesis protein\tK20483 lanB; class I lanthipeptide synthase [EC:3.13.2.4]" }, { "name":"DDW44_30830 lanthionine synthetase\tK20484 lanC; class I lanthipeptide synthase [EC:3.13.2.4]" }, { "name":"DDW44_03420 CoA ester lyase\tK01644 citE; citrate lyase subunit beta \/ citryl-CoA lyase [EC:4.1.3.34]" }, { "name":"DDW44_26340 CoA ester lyase\tK01644 citE; citrate lyase subunit beta \/ citryl-CoA lyase [EC:4.1.3.34]" }, { "name":"DDW44_09770 NAD-dependent malic enzyme\tK00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]" }, { "name":"DDW44_20635 NADP-dependent malic enzyme\tK00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]" }, { "name":"DDW44_00310 DNA-binding response regulator\tK07684 narL; two-component system, NarL family, nitrate\/nitrite response regulator NarL" }, { "name":"DDW44_07430 DNA-binding response regulator\tK07684 narL; two-component system, NarL family, nitrate\/nitrite response regulator NarL" }, { "name":"DDW44_12625 sensor histidine kinase\tK07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]" }, { "name":"DDW44_14230 two-component sensor histidine kinase\tK07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]" }, { "name":"DDW44_04735 response regulator\tK07693 desR; two-component system, NarL family, response regulator DesR" }, { "name":"DDW44_14235 DNA-binding response regulator\tK07693 desR; two-component system, NarL family, response regulator DesR" }, { "name":"DDW44_15740 histidine kinase\tK07682 devS; two-component system, NarL family, sensor histidine kinase DevS [EC:2.7.13.3]" }, { "name":"DDW44_28560 histidine kinase\tK07682 devS; two-component system, NarL family, sensor histidine kinase DevS [EC:2.7.13.3]" }, { "name":"DDW44_15500 DNA-binding response regulator\tK07695 devR; two-component system, NarL family, response regulator DevR" }, { "name":"DDW44_15735 DNA-binding response regulator\tK07695 devR; two-component system, NarL family, response regulator DevR" }, { "name":"DDW44_28550 DNA-binding response regulator\tK07695 devR; two-component system, NarL family, response regulator DevR" }, { "name":"DDW44_19495 hypothetical protein\tK02651 flp; pilus assembly protein Flp\/PilA" }, { "name":"DDW44_19445 cpaB; Flp pilus assembly protein CpaB\tK02279 cpaB; pilus assembly protein CpaB" }, { "name":"DDW44_19450 septum formation initiator\tK02282 cpaE; pilus assembly protein CpaE" }, { "name":"DDW44_16400 pilus assembly protein CpaF\tK02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]" }, { "name":"DDW44_19470 CpaF family protein\tK02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]" }, { "name":"DDW44_16405 hypothetical protein\tK12510 tadB; tight adherence protein B" }, { "name":"DDW44_19475 hypothetical protein\tK12510 tadB; tight adherence protein B" }, { "name":"DDW44_16410 type II secretion protein F\tK12511 tadC; tight adherence protein C" }, { "name":"DDW44_19480 type II secretion system F family protein\tK12511 tadC; tight adherence protein C" }, { "name":"DDW44_22165 [protein-PII] uridylyltransferase\tK00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]" }, { "name":"DDW44_22160 P-II family nitrogen regulator\tK04751 glnB; nitrogen regulatory protein P-II 1" }, { "name":"DDW44_02115 glutamine synthetase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"DDW44_04295 glnA; type I glutamate--ammonia ligase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"DDW44_04360 glutamine synthetase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"DDW44_04460 glutamine synthetase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"DDW44_11800 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_12820 acetyl-CoA C-acyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_21175 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_27075 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_29685 thiolase domain-containing protein\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_21315 C4-dicarboxylate transporter DctA\tK11103 dctA; aerobic C4-dicarboxylate transport protein" }, { "name":"DDW44_01005 hydrogenase expression protein HypE\tK06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]" }, { "name":"DDW44_01000 hydrogenase\tK06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]" }, { "name":"DDW44_16325 Crp\/Fnr family transcriptional regulator\tK10914 crp; CRP\/FNR family transcriptional regulator, cyclic AMP receptor protein" }, { "name":"DDW44_23995 Crp\/Fnr family transcriptional regulator\tK10914 crp; CRP\/FNR family transcriptional regulator, cyclic AMP receptor protein" }, { "name":"DDW44_17430 glutaminase\tK01425 glsA; glutaminase [EC:3.5.1.2]" }, { "name":"DDW44_14810 cytochrome ubiquinol oxidase subunit I\tK00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]" }, { "name":"DDW44_26080 cytochrome ubiquinol oxidase subunit I\tK00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]" }, { "name":"DDW44_14805 cydB; cytochrome d ubiquinol oxidase subunit II\tK00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]" }, { "name":"DDW44_26085 cytochrome BD oxidase subunit II\tK00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]" }, { "name":"DDW44_14870 protein tyrosine phosphatase\tK25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]" }, { "name":"DDW44_21005 protein-tyrosine-phosphatase\tK25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]" }, { "name":"DDW44_25925 low molecular weight phosphatase family protein\tK25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]" }, { "name":"DDW44_08275 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)\tK01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]" }, { "name":"DDW44_09350 endoglucanase\tK01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]" }, { "name":"DDW44_11265 endoglucanase\tK01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]" } ] }, { "name":"04010 MAPK signaling pathway" }, { "name":"04013 MAPK signaling pathway - fly" }, { "name":"04016 MAPK signaling pathway - plant" }, { "name":"04011 MAPK signaling pathway - yeast" }, { "name":"04012 ErbB signaling pathway" }, { "name":"04014 Ras signaling pathway" }, { "name":"04015 Rap1 signaling pathway" }, { "name":"04310 Wnt signaling pathway" }, { "name":"04330 Notch signaling pathway" }, { "name":"04340 Hedgehog signaling pathway" }, { "name":"04341 Hedgehog signaling pathway - fly" }, { "name":"04350 TGF-beta signaling pathway" }, { "name":"04390 Hippo signaling pathway" }, { "name":"04391 Hippo signaling pathway - fly" }, { "name":"04392 Hippo signaling pathway - multiple species" }, { "name":"04370 VEGF signaling pathway" }, { "name":"04371 Apelin signaling pathway" }, { "name":"04630 JAK-STAT signaling pathway" }, { "name":"04064 NF-kappa B signaling pathway" }, { "name":"04668 TNF signaling pathway" }, { "name":"04066 HIF-1 signaling pathway" }, { "name":"04068 FoxO signaling pathway" }, { "name":"04020 Calcium signaling pathway" }, { "name":"04070 Phosphatidylinositol signaling system" }, { "name":"04072 Phospholipase D signaling pathway" }, { "name":"04071 Sphingolipid signaling pathway" }, { "name":"04024 cAMP signaling pathway" }, { "name":"04022 cGMP-PKG signaling pathway" }, { "name":"04151 PI3K-Akt signaling pathway" }, { "name":"04152 AMPK signaling pathway" }, { "name":"04150 mTOR signaling pathway" }, { "name":"04075 Plant hormone signal transduction" } ] }, { "name":"09133 Signaling molecules and interaction", "children":[ { "name":"04080 Neuroactive ligand-receptor interaction" }, { "name":"04082 Neuroactive ligand signaling" }, { "name":"04081 Hormone signaling" }, { "name":"04060 Cytokine-cytokine receptor interaction" }, { "name":"04061 Viral protein interaction with cytokine and cytokine receptor" }, { "name":"04512 ECM-receptor interaction" }, { "name":"04514 Cell adhesion molecule (CAM) interaction" }, { "name":"04517 IgSF CAM signaling" }, { "name":"04518 Integrin signaling" }, { "name":"04519 Cadherin signaling" } ] } ] }, { "name":"09140 Cellular Processes", "children":[ { "name":"09141 Transport and catabolism", "children":[ { "name":"04144 Endocytosis" }, { "name":"04145 Phagocytosis" }, { "name":"04142 Lysosome biogenesis [PATH:stir04142]", "children":[ { "name":"DDW44_00180 DUF1211 domain-containing protein\tK24915 TMEM175; TMEM175 potassium channel family protein" }, { "name":"DDW44_01645 DUF1211 domain-containing protein\tK24915 TMEM175; TMEM175 potassium channel family protein" }, { "name":"DDW44_18750 beta-N-acetylglucosaminidase\tK12373 HEXA_B; hexosaminidase [EC:3.2.1.52]" }, { "name":"DDW44_08545 hyaluronidase\tK01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35]" } ] }, { "name":"04146 Peroxisome [PATH:stir04146]", "children":[ { "name":"DDW44_27065 carnitine dehydratase\tK01796 AMACR; alpha-methylacyl-CoA racemase [EC:5.1.99.4]" }, { "name":"DDW44_02530 acyl-CoA synthetase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"DDW44_03975 long-chain fatty acid--CoA ligase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"DDW44_06280 long-chain fatty acid--CoA ligase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"DDW44_08095 long-chain fatty acid--CoA ligase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"DDW44_15655 acyl-CoA synthetase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"DDW44_26555 long-chain fatty acid--CoA ligase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"DDW44_20210 NAD(+) diphosphatase\tK03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]" }, { "name":"DDW44_04325 carnitine O-acetyltransferase\tK00624 CRAT; carnitine O-acetyltransferase [EC:2.3.1.7]" }, { "name":"DDW44_25985 FAD-binding oxidoreductase\tK00803 AGPS; alkyldihydroxyacetonephosphate synthase [EC:2.5.1.26]" }, { "name":"DDW44_01375 NADP-dependent isocitrate dehydrogenase\tK00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]" }, { "name":"DDW44_08975 hydroxymethylglutaryl-CoA lyase\tK01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]" }, { "name":"DDW44_19600 catalase\tK03781 katE; catalase [EC:1.11.1.6]" }, { "name":"DDW44_20350 catalase\tK03781 katE; catalase [EC:1.11.1.6]" }, { "name":"DDW44_25665 catalase\tK03781 katE; catalase [EC:1.11.1.6]" }, { "name":"DDW44_05720 hypothetical protein\tK04565 SOD1; superoxide dismutase, Cu-Zn family [EC:1.15.1.1]" }, { "name":"DDW44_08460 superoxide dismutase\tK04564 SOD2; superoxide dismutase, Fe-Mn family [EC:1.15.1.1]" } ] }, { "name":"04149 Peroxisome - yeast" }, { "name":"04140 Autophagy - animal" }, { "name":"04138 Autophagy - yeast" }, { "name":"04136 Autophagy - other" }, { "name":"04137 Mitophagy - animal" }, { "name":"04139 Mitophagy - yeast" }, { "name":"04148 Efferocytosis" } ] }, { "name":"09143 Cell growth and death", "children":[ { "name":"04110 Cell cycle" }, { "name":"04111 Cell cycle - yeast" }, { "name":"04112 Cell cycle - Caulobacter" }, { "name":"04113 Meiosis - yeast" }, { "name":"04114 Oocyte meiosis" }, { "name":"04210 Apoptosis" }, { "name":"04214 Apoptosis - fly" }, { "name":"04215 Apoptosis - multiple species" }, { "name":"04216 Ferroptosis" }, { "name":"04217 Necroptosis" }, { "name":"04115 p53 signaling pathway" }, { "name":"04218 Cellular senescence" }, { "name":"04156 Integrated stress response (ISR) signaling pathway [PATH:stir04156]", "children":[ { "name":"DDW44_06330 tRNA-Met\tK14230 tRNA-Met; tRNA Met" }, { "name":"DDW44_06800 tRNA-Met\tK14230 tRNA-Met; tRNA Met" }, { "name":"DDW44_17860 tRNA-Met\tK14230 tRNA-Met; tRNA Met" }, { "name":"DDW44_20310 tRNA-Met\tK14230 tRNA-Met; tRNA Met" }, { "name":"DDW44_20340 tRNA-Met\tK14230 tRNA-Met; tRNA Met" }, { "name":"DDW44_05325 molecular chaperone DnaK\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"DDW44_28075 hypothetical protein\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"DDW44_13765 groL; chaperonin GroEL\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"DDW44_18285 groL; chaperonin GroEL\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" } ] } ] }, { "name":"09144 Cellular community - eukaryotes", "children":[ { "name":"04510 Focal adhesion" }, { "name":"04520 Adherens junction" }, { "name":"04530 Tight junction" }, { "name":"04540 Gap junction" }, { "name":"04550 Signaling pathways regulating pluripotency of stem cells" } ] }, { "name":"09145 Cellular community - prokaryotes", "children":[ { "name":"02024 Quorum sensing [PATH:stir02024]", "children":[ { "name":"DDW44_03470 anthranilate synthase component I\tK01657 trpE; anthranilate synthase component I [EC:4.1.3.27]" }, { "name":"DDW44_03895 3-deoxy-7-phosphoheptulonate synthase class II\tK01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]" }, { "name":"DDW44_03905 phenazine-specific anthranilate synthase component I\tK13063 phzE; 2-amino-4-deoxychorismate synthase [EC:2.6.1.86]" }, { "name":"DDW44_23635 DNA-binding response regulator\tK07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE" }, { "name":"DDW44_16720 glutamate decarboxylase\tK01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]" }, { "name":"DDW44_19740 ABC transporter substrate-binding protein\tK02055 ABC.SP.S; putative spermidine\/putrescine transport system substrate-binding protein" }, { "name":"DDW44_19750 ABC transporter permease\tK02053 ABC.SP.P; putative spermidine\/putrescine transport system permease protein" }, { "name":"DDW44_19745 ABC transporter\tK02054 ABC.SP.P1; putative spermidine\/putrescine transport system permease protein" }, { "name":"DDW44_19755 ABC transporter ATP-binding protein\tK02052 ABC.SP.A; putative spermidine\/putrescine transport system ATP-binding protein" }, { "name":"DDW44_03200 branched-chain amino acid ABC transporter substrate-binding protein\tK01999 livK; branched-chain amino acid transport system substrate-binding protein" }, { "name":"DDW44_13325 hypothetical protein\tK01999 livK; branched-chain amino acid transport system substrate-binding protein" }, { "name":"DDW44_03205 branched-chain amino acid ABC transporter permease\tK01997 livH; branched-chain amino acid transport system permease protein" }, { "name":"DDW44_25560 branched-chain amino acid ABC transporter permease\tK01997 livH; branched-chain amino acid transport system permease protein" }, { "name":"DDW44_03210 branched-chain amino acid ABC transporter permease\tK01998 livM; branched-chain amino acid transport system permease protein" }, { "name":"DDW44_25565 branched-chain amino acid ABC transporter permease\tK01998 livM; branched-chain amino acid transport system permease protein" }, { "name":"DDW44_03215 ABC transporter ATP-binding protein\tK01995 livG; branched-chain amino acid transport system ATP-binding protein" }, { "name":"DDW44_25555 ABC transporter ATP-binding protein\tK01995 livG; branched-chain amino acid transport system ATP-binding protein" }, { "name":"DDW44_03220 ABC transporter ATP-binding protein\tK01996 livF; branched-chain amino acid transport system ATP-binding protein" }, { "name":"DDW44_25550 ABC transporter ATP-binding protein\tK01996 livF; branched-chain amino acid transport system ATP-binding protein" }, { "name":"DDW44_27950 hypothetical protein\tK20276 bapA; large repetitive protein" }, { "name":"DDW44_02530 acyl-CoA synthetase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"DDW44_03975 long-chain fatty acid--CoA ligase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"DDW44_06280 long-chain fatty acid--CoA ligase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"DDW44_08095 long-chain fatty acid--CoA ligase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"DDW44_15655 acyl-CoA synthetase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"DDW44_26555 long-chain fatty acid--CoA ligase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"DDW44_16325 Crp\/Fnr family transcriptional regulator\tK10914 crp; CRP\/FNR family transcriptional regulator, cyclic AMP receptor protein" }, { "name":"DDW44_23995 Crp\/Fnr family transcriptional regulator\tK10914 crp; CRP\/FNR family transcriptional regulator, cyclic AMP receptor protein" }, { "name":"DDW44_05185 ribA; GTP cyclohydrolase II\tK01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]" }, { "name":"DDW44_05195 deaminase\tK11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase \/ 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]" }, { "name":"DDW44_11245 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase\/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD\tK11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase \/ 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]" }, { "name":"DDW44_19845 ABC transporter substrate-binding protein\tK15580 oppA; oligopeptide transport system substrate-binding protein" }, { "name":"DDW44_19870 peptide ABC transporter substrate-binding protein\tK15580 oppA; oligopeptide transport system substrate-binding protein" }, { "name":"DDW44_19850 ABC transporter permease\tK15581 oppB; oligopeptide transport system permease protein" }, { "name":"DDW44_19875 ABC transporter permease\tK15581 oppB; oligopeptide transport system permease protein" }, { "name":"DDW44_19855 ABC transporter permease\tK15582 oppC; oligopeptide transport system permease protein" }, { "name":"DDW44_19880 ABC transporter permease\tK15582 oppC; oligopeptide transport system permease protein" }, { "name":"DDW44_19860 ABC transporter ATP-binding protein\tK15583 oppD; oligopeptide transport system ATP-binding protein" }, { "name":"DDW44_19885 ABC transporter ATP-binding protein\tK15583 oppD; oligopeptide transport system ATP-binding protein" }, { "name":"DDW44_19865 dipeptide ABC transporter ATP-binding protein\tK10823 oppF; oligopeptide transport system ATP-binding protein" }, { "name":"DDW44_19890 peptide ABC transporter ATP-binding protein\tK10823 oppF; oligopeptide transport system ATP-binding protein" }, { "name":"DDW44_02300 ABC transporter substrate-binding protein\tK02035 ABC.PE.S; peptide\/nickel transport system substrate-binding protein" }, { "name":"DDW44_02305 peptide-binding protein\tK02035 ABC.PE.S; peptide\/nickel transport system substrate-binding protein" }, { "name":"DDW44_10775 peptide-binding protein\tK02035 ABC.PE.S; peptide\/nickel transport system substrate-binding protein" }, { "name":"DDW44_18680 peptide-binding protein\tK02035 ABC.PE.S; peptide\/nickel transport system substrate-binding protein" }, { "name":"DDW44_19835 hypothetical protein\tK02035 ABC.PE.S; peptide\/nickel transport system substrate-binding protein" }, { "name":"DDW44_21475 ABC transporter substrate-binding protein\tK02035 ABC.PE.S; peptide\/nickel transport system substrate-binding protein" }, { "name":"DDW44_22820 ABC transporter substrate-binding protein\tK02035 ABC.PE.S; peptide\/nickel transport system substrate-binding protein" }, { "name":"DDW44_23820 ABC transporter substrate-binding protein\tK02035 ABC.PE.S; peptide\/nickel transport system substrate-binding protein" }, { "name":"DDW44_12800 ABC transporter permease\tK02033 ABC.PE.P; peptide\/nickel transport system permease protein" }, { "name":"DDW44_21480 ABC transporter permease\tK02033 ABC.PE.P; peptide\/nickel transport system permease protein" }, { "name":"DDW44_22815 ABC transporter permease\tK02033 ABC.PE.P; peptide\/nickel transport system permease protein" }, { "name":"DDW44_23815 ABC transporter permease\tK02033 ABC.PE.P; peptide\/nickel transport system permease protein" }, { "name":"DDW44_12805 ABC transporter permease\tK02034 ABC.PE.P1; peptide\/nickel transport system permease protein" }, { "name":"DDW44_21485 ABC transporter permease\tK02034 ABC.PE.P1; peptide\/nickel transport system permease protein" }, { "name":"DDW44_22810 ABC transporter permease\tK02034 ABC.PE.P1; peptide\/nickel transport system permease protein" }, { "name":"DDW44_23810 ABC transporter permease\tK02034 ABC.PE.P1; peptide\/nickel transport system permease protein" }, { "name":"DDW44_12795 peptide ABC transporter ATP-binding protein\tK02031 ddpD; peptide\/nickel transport system ATP-binding protein" }, { "name":"DDW44_21490 dipeptide\/oligopeptide\/nickel ABC transporter ATP-binding protein\tK02031 ddpD; peptide\/nickel transport system ATP-binding protein" }, { "name":"DDW44_22805 dipeptide\/oligopeptide\/nickel ABC transporter ATP-binding protein\tK02031 ddpD; peptide\/nickel transport system ATP-binding protein" }, { "name":"DDW44_23805 ABC transporter ATP-binding protein\tK02031 ddpD; peptide\/nickel transport system ATP-binding protein" }, { "name":"DDW44_12790 ABC transporter ATP-binding protein\tK02032 ddpF; peptide\/nickel transport system ATP-binding protein" }, { "name":"DDW44_21495 oligopeptide ABC transporter ATP-binding protein\tK02032 ddpF; peptide\/nickel transport system ATP-binding protein" }, { "name":"DDW44_09400 hypothetical protein\tK03217 yidC; YidC\/Oxa1 family membrane protein insertase" }, { "name":"DDW44_15055 membrane protein insertase YidC\tK03217 yidC; YidC\/Oxa1 family membrane protein insertase" }, { "name":"DDW44_27615 protease\tK14645 K14645; serine protease [EC:3.4.21.-]" }, { "name":"DDW44_12635 protein translocase subunit SecD\tK12257 secDF; SecD\/SecF fusion protein" }, { "name":"DDW44_17900 preprotein translocase subunit SecE\tK03073 secE; preprotein translocase subunit SecE" }, { "name":"DDW44_02930 preprotein translocase subunit SecG\tK03075 secG; preprotein translocase subunit SecG" }, { "name":"DDW44_18100 preprotein translocase subunit SecY\tK03076 secY; preprotein translocase subunit SecY" }, { "name":"DDW44_11570 yajC; preprotein translocase subunit YajC\tK03210 yajC; preprotein translocase subunit YajC" }, { "name":"DDW44_10050 preprotein translocase subunit SecA\tK03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]" }, { "name":"DDW44_22140 signal recognition particle-docking protein FtsY\tK03110 ftsY; fused signal recognition particle receptor" }, { "name":"DDW44_22170 signal recognition particle protein\tK03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]" }, { "name":"DDW44_21595 phospholipase C, phosphocholine-specific\tK01114 plc; phospholipase C [EC:3.1.4.3]" }, { "name":"DDW44_30835 bacteriocin biosynthesis protein\tK20483 lanB; class I lanthipeptide synthase [EC:3.13.2.4]" }, { "name":"DDW44_30830 lanthionine synthetase\tK20484 lanC; class I lanthipeptide synthase [EC:3.13.2.4]" } ] }, { "name":"05111 Biofilm formation - Vibrio cholerae" }, { "name":"02025 Biofilm formation - Pseudomonas aeruginosa" }, { "name":"02026 Biofilm formation - Escherichia coli" } ] }, { "name":"09142 Cell motility", "children":[ { "name":"02030 Bacterial chemotaxis", "children":[ { "name":"DDW44_30295 transporter\tK10439 rbsB; ribose transport system substrate-binding protein" } ] }, { "name":"02040 Flagellar assembly [PATH:stir02040]", "children":[ { "name":"DDW44_07745 RNA polymerase subunit sigma-70\tK03086 rpoD; RNA polymerase primary sigma factor" }, { "name":"DDW44_23350 RNA polymerase sigma factor\tK03086 rpoD; RNA polymerase primary sigma factor" }, { "name":"DDW44_22260 RNA polymerase sigma factor WhiG\tK02405 fliA; RNA polymerase sigma factor FliA" } ] }, { "name":"04814 Motor proteins" }, { "name":"04820 Cytoskeleton in muscle cells", "children":[ { "name":"DDW44_11870 phosphopyruvate hydratase\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" } ] }, { "name":"04810 Regulation of actin cytoskeleton" } ] } ] }, { "name":"09150 Organismal Systems", "children":[ { "name":"09151 Immune system", "children":[ { "name":"04640 Hematopoietic cell lineage" }, { "name":"04610 Complement and coagulation cascades" }, { "name":"04611 Platelet activation" }, { "name":"04613 Neutrophil extracellular trap formation" }, { "name":"04620 Toll-like receptor signaling pathway" }, { "name":"04624 Toll and Imd signaling pathway" }, { "name":"04621 NOD-like receptor signaling pathway" }, { "name":"04622 RIG-I-like receptor signaling pathway" }, { "name":"04623 Cytosolic DNA-sensing pathway" }, { "name":"04625 C-type lectin receptor signaling pathway" }, { "name":"04650 Natural killer cell mediated cytotoxicity" }, { "name":"04612 Antigen processing and presentation" }, { "name":"04660 T cell receptor signaling pathway" }, { "name":"04658 Th1 and Th2 cell differentiation" }, { "name":"04659 Th17 cell differentiation" }, { "name":"04657 IL-17 signaling pathway" }, { "name":"04662 B cell receptor signaling pathway" }, { "name":"04664 Fc epsilon RI signaling pathway" }, { "name":"04666 Fc gamma R-mediated phagosome formation" }, { "name":"04670 Leukocyte transendothelial migration" }, { "name":"04672 Intestinal immune network for IgA production" }, { "name":"04062 Chemokine signaling pathway" } ] }, { "name":"09152 Endocrine system", "children":[ { "name":"04911 Insulin secretion" }, { "name":"04910 Insulin signaling pathway" }, { "name":"04922 Glucagon signaling pathway" }, { "name":"04923 Regulation of lipolysis in adipocytes" }, { "name":"04920 Adipocytokine signaling pathway" }, { "name":"03320 PPAR signaling pathway" }, { "name":"04929 GnRH secretion" }, { "name":"04912 GnRH signaling pathway" }, { "name":"04913 Ovarian steroidogenesis" }, { "name":"04915 Estrogen signaling pathway" }, { "name":"04914 Progesterone-mediated oocyte maturation" }, { "name":"04917 Prolactin signaling pathway" }, { "name":"04921 Oxytocin signaling pathway" }, { "name":"04926 Relaxin signaling pathway" }, { "name":"04935 Growth hormone synthesis, secretion and action" }, { "name":"04918 Thyroid hormone synthesis" }, { "name":"04919 Thyroid hormone signaling pathway" }, { "name":"04928 Parathyroid hormone synthesis, secretion and action" }, { "name":"04916 Melanogenesis" }, { "name":"04924 Renin secretion" }, { "name":"04614 Renin-angiotensin system" }, { "name":"04925 Aldosterone synthesis and secretion" }, { "name":"04927 Cortisol synthesis and secretion" } ] }, { "name":"09153 Circulatory system", "children":[ { "name":"04260 Cardiac muscle contraction" }, { "name":"04261 Adrenergic signaling in cardiomyocytes" }, { "name":"04270 Vascular smooth muscle contraction" } ] }, { "name":"09154 Digestive system", "children":[ { "name":"04970 Salivary secretion" }, { "name":"04971 Gastric acid secretion" }, { "name":"04972 Pancreatic secretion" }, { "name":"04976 Bile secretion" }, { "name":"04973 Carbohydrate digestion and absorption" }, { "name":"04974 Protein digestion and absorption" }, { "name":"04975 Fat digestion and absorption" }, { "name":"04979 Cholesterol metabolism" }, { "name":"04977 Vitamin digestion and absorption" }, { "name":"04981 Folate transport and metabolism [PATH:stir04981]", "children":[ { "name":"DDW44_12430 5-formyltetrahydrofolate cyclo-ligase\tK01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]" }, { "name":"DDW44_18625 glyA; serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"DDW44_21010 serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"DDW44_21445 serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"DDW44_24095 homocysteine S-methyltransferase\tK00547 mmuM; homocysteine S-methyltransferase [EC:2.1.1.10]" }, { "name":"DDW44_02315 metH; methionine synthase\tK00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]" } ] }, { "name":"04980 Cobalamin transport and metabolism [PATH:stir04980]", "children":[ { "name":"DDW44_21100 cob(I)yrinic acid a,c-diamide adenosyltransferase\tK00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]" }, { "name":"DDW44_21180 methylmalonyl Co-A mutase-associated GTPase MeaB\tK07588 MMAA; GTPase [EC:3.6.5.-]" }, { "name":"DDW44_28960 methylmalonyl Co-A mutase-associated GTPase MeaB\tK07588 MMAA; GTPase [EC:3.6.5.-]" }, { "name":"DDW44_28950 mutA; methylmalonyl-CoA mutase small subunit\tK01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]" }, { "name":"DDW44_28955 methylmalonyl-CoA mutase\tK01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]" }, { "name":"DDW44_02315 metH; methionine synthase\tK00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]" } ] }, { "name":"04978 Mineral absorption" } ] }, { "name":"09155 Excretory system", "children":[ { "name":"04962 Vasopressin-regulated water reabsorption" }, { "name":"04960 Aldosterone-regulated sodium reabsorption" }, { "name":"04961 Endocrine and other factor-regulated calcium reabsorption" }, { "name":"04964 Proximal tubule bicarbonate reclamation" }, { "name":"04966 Collecting duct acid secretion" } ] }, { "name":"09156 Nervous system", "children":[ { "name":"04724 Glutamatergic synapse" }, { "name":"04727 GABAergic synapse" }, { "name":"04725 Cholinergic synapse" }, { "name":"04728 Dopaminergic synapse" }, { "name":"04726 Serotonergic synapse" }, { "name":"04720 Long-term potentiation" }, { "name":"04730 Long-term depression" }, { "name":"04723 Retrograde endocannabinoid signaling" }, { "name":"04721 Synaptic vesicle cycle" }, { "name":"04722 Neurotrophin signaling pathway" } ] }, { "name":"09157 Sensory system", "children":[ { "name":"04744 Phototransduction" }, { "name":"04745 Phototransduction - fly" }, { "name":"04740 Olfactory transduction" }, { "name":"04742 Taste transduction" }, { "name":"04750 Inflammatory mediator regulation of TRP channels" } ] }, { "name":"09158 Development and regeneration", "children":[ { "name":"04320 Dorso-ventral axis formation" }, { "name":"04360 Axon guidance" }, { "name":"04361 Axon regeneration" }, { "name":"04380 Osteoclast differentiation" }, { "name":"04382 Cornified envelope formation [PATH:stir04382]", "children":[ { "name":"DDW44_26660 hypothetical protein\tK01481 E3.5.3.15; protein-arginine deiminase [EC:3.5.3.15]" }, { "name":"DDW44_19080 hutH; histidine ammonia-lyase\tK01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]" } ] } ] }, { "name":"09149 Aging", "children":[ { "name":"04211 Longevity regulating pathway" }, { "name":"04212 Longevity regulating pathway - worm" }, { "name":"04213 Longevity regulating pathway - multiple species" } ] }, { "name":"09159 Environmental adaptation", "children":[ { "name":"04710 Circadian rhythm" }, { "name":"04713 Circadian entrainment" }, { "name":"04711 Circadian rhythm - fly" }, { "name":"04712 Circadian rhythm - plant" }, { "name":"04714 Thermogenesis" }, { "name":"04626 Plant-pathogen interaction" } ] } ] }, { "name":"09160 Human Diseases", "children":[ { "name":"09161 Cancer: overview", "children":[ { "name":"05200 Pathways in cancer" }, { "name":"05202 Transcriptional misregulation in cancer" }, { "name":"05206 MicroRNAs in cancer" }, { "name":"05205 Proteoglycans in cancer" }, { "name":"05204 Chemical carcinogenesis - DNA adducts" }, { "name":"05207 Chemical carcinogenesis - receptor activation" }, { "name":"05208 Chemical carcinogenesis - reactive oxygen species" }, { "name":"05203 Viral carcinogenesis" }, { "name":"05230 Central carbon metabolism in cancer" }, { "name":"05231 Choline metabolism in cancer" }, { "name":"05235 PD-L1 expression and PD-1 checkpoint pathway in cancer" } ] }, { "name":"09162 Cancer: specific types", "children":[ { "name":"05210 Colorectal cancer" }, { "name":"05212 Pancreatic cancer" }, { "name":"05225 Hepatocellular carcinoma" }, { "name":"05226 Gastric cancer" }, { "name":"05214 Glioma" }, { "name":"05216 Thyroid cancer" }, { "name":"05221 Acute myeloid leukemia" }, { "name":"05220 Chronic myeloid leukemia" }, { "name":"05217 Basal cell carcinoma" }, { "name":"05218 Melanoma" }, { "name":"05211 Renal cell carcinoma" }, { "name":"05219 Bladder cancer" }, { "name":"05215 Prostate cancer" }, { "name":"05213 Endometrial cancer" }, { "name":"05224 Breast cancer" }, { "name":"05222 Small cell lung cancer" }, { "name":"05223 Non-small cell lung cancer" } ] }, { "name":"09172 Infectious disease: viral", "children":[ { "name":"05166 Human T-cell leukemia virus 1 infection" }, { "name":"05170 Human immunodeficiency virus 1 infection" }, { "name":"05161 Hepatitis B" }, { "name":"05160 Hepatitis C" }, { "name":"05171 Coronavirus disease" }, { "name":"05164 Influenza A" }, { "name":"05162 Measles" }, { "name":"05168 Herpes simplex virus 1 infection" }, { "name":"05163 Human cytomegalovirus infection" }, { "name":"05167 Kaposi sarcoma-associated herpesvirus infection" }, { "name":"05169 Epstein-Barr virus infection" }, { "name":"05165 Human papillomavirus infection" } ] }, { "name":"09171 Infectious disease: bacterial", "children":[ { "name":"05110 Vibrio cholerae infection" }, { "name":"05120 Epithelial cell signaling in Helicobacter pylori infection" }, { "name":"05130 Pathogenic Escherichia coli infection" }, { "name":"05132 Salmonella infection" }, { "name":"05131 Shigellosis" }, { "name":"05135 Yersinia infection" }, { "name":"05133 Pertussis" }, { "name":"05134 Legionellosis" }, { "name":"05150 Staphylococcus aureus infection" }, { "name":"05152 Tuberculosis" }, { "name":"05100 Bacterial invasion of epithelial cells" } ] }, { "name":"09174 Infectious disease: parasitic", "children":[ { "name":"05146 Amoebiasis" }, { "name":"05144 Malaria" }, { "name":"05145 Toxoplasmosis" }, { "name":"05140 Leishmaniasis" }, { "name":"05142 Chagas disease" }, { "name":"05143 African trypanosomiasis" } ] }, { "name":"09163 Immune disease", "children":[ { "name":"05310 Asthma" }, { "name":"05322 Systemic lupus erythematosus" }, { "name":"05323 Rheumatoid arthritis" }, { "name":"05320 Autoimmune thyroid disease" }, { "name":"05321 Inflammatory bowel disease" }, { "name":"05330 Allograft rejection" }, { "name":"05332 Graft-versus-host disease" }, { "name":"05340 Primary immunodeficiency" } ] }, { "name":"09164 Neurodegenerative disease", "children":[ { "name":"05010 Alzheimer disease" }, { "name":"05012 Parkinson disease" }, { "name":"05014 Amyotrophic lateral sclerosis" }, { "name":"05016 Huntington disease" }, { "name":"05017 Spinocerebellar ataxia" }, { "name":"05020 Prion disease" }, { "name":"05022 Pathways of neurodegeneration - multiple diseases" } ] }, { "name":"09165 Substance dependence", "children":[ { "name":"05030 Cocaine addiction" }, { "name":"05031 Amphetamine addiction" }, { "name":"05032 Morphine addiction" }, { "name":"05033 Nicotine addiction" }, { "name":"05034 Alcoholism" } ] }, { "name":"09166 Cardiovascular disease", "children":[ { "name":"05417 Lipid and atherosclerosis" }, { "name":"05418 Fluid shear stress and atherosclerosis" }, { "name":"05410 Hypertrophic cardiomyopathy" }, { "name":"05412 Arrhythmogenic right ventricular cardiomyopathy" }, { "name":"05414 Dilated cardiomyopathy" }, { "name":"05415 Diabetic cardiomyopathy" }, { "name":"05416 Viral myocarditis" } ] }, { "name":"09167 Endocrine and metabolic disease", "children":[ { "name":"04930 Type II diabetes mellitus" }, { "name":"04940 Type I diabetes mellitus" }, { "name":"04950 Maturity onset diabetes of the young" }, { "name":"04936 Alcoholic liver disease" }, { "name":"04932 Non-alcoholic fatty liver disease" }, { "name":"04931 Insulin resistance" }, { "name":"04933 AGE-RAGE signaling pathway in diabetic complications" }, { "name":"04934 Cushing syndrome" } ] }, { "name":"09175 Drug resistance: antimicrobial", "children":[ { "name":"01501 beta-Lactam resistance [PATH:stir01501]", "children":[ { "name":"DDW44_08810 beta-N-acetylhexosaminidase\tK01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]" }, { "name":"DDW44_20480 sugar hydrolase\tK01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]" }, { "name":"DDW44_19845 ABC transporter substrate-binding protein\tK15580 oppA; oligopeptide transport system substrate-binding protein" }, { "name":"DDW44_19870 peptide ABC transporter substrate-binding protein\tK15580 oppA; oligopeptide transport system substrate-binding protein" }, { "name":"DDW44_19850 ABC transporter permease\tK15581 oppB; oligopeptide transport system permease protein" }, { "name":"DDW44_19875 ABC transporter permease\tK15581 oppB; oligopeptide transport system permease protein" }, { "name":"DDW44_19855 ABC transporter permease\tK15582 oppC; oligopeptide transport system permease protein" }, { "name":"DDW44_19880 ABC transporter permease\tK15582 oppC; oligopeptide transport system permease protein" }, { "name":"DDW44_19860 ABC transporter ATP-binding protein\tK15583 oppD; oligopeptide transport system ATP-binding protein" }, { "name":"DDW44_19885 ABC transporter ATP-binding protein\tK15583 oppD; oligopeptide transport system ATP-binding protein" }, { "name":"DDW44_19865 dipeptide ABC transporter ATP-binding protein\tK10823 oppF; oligopeptide transport system ATP-binding protein" }, { "name":"DDW44_19890 peptide ABC transporter ATP-binding protein\tK10823 oppF; oligopeptide transport system ATP-binding protein" }, { "name":"DDW44_01450 M56 family peptidase\tK02172 blaR1; bla regulator protein blaR1" }, { "name":"DDW44_23115 class A beta-lactamase\tK17836 penP; beta-lactamase class A [EC:3.5.2.6]" }, { "name":"DDW44_19595 penicillin-binding protein\tK05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]" }, { "name":"DDW44_08340 mrdA; penicillin-binding protein 2\tK05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]" }, { "name":"DDW44_03710 cell division protein\tK03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]" } ] }, { "name":"01502 Vancomycin resistance [PATH:stir01502]", "children":[ { "name":"DDW44_10980 D-alanyl-D-alanine dipeptidase\tK08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]" }, { "name":"DDW44_22040 D-alanine--D-alanine ligase A\tK01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]" }, { "name":"DDW44_18225 alanine racemase\tK01775 alr; alanine racemase [EC:5.1.1.1]" }, { "name":"DDW44_03700 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase\tK01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]" }, { "name":"DDW44_03695 phospho-N-acetylmuramoyl-pentapeptide-transferase\tK01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]" }, { "name":"DDW44_03680 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase\tK02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]" }, { "name":"DDW44_04505 hypothetical protein\tK18353 vanJ; vancomycin resistance protein VanJ" } ] }, { "name":"01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:stir01503]", "children":[ { "name":"DDW44_04775 N-acetylmuramoyl-L-alanine amidase\tK01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]" }, { "name":"DDW44_15255 peptidylprolyl isomerase\tK03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]" } ] } ] }, { "name":"09176 Drug resistance: antineoplastic", "children":[ { "name":"01521 EGFR tyrosine kinase inhibitor resistance" }, { "name":"01524 Platinum drug resistance" }, { "name":"01523 Antifolate resistance" }, { "name":"01522 Endocrine resistance" } ] } ] }, { "name":"09180 Brite Hierarchies", "children":[ { "name":"09181 Protein families: metabolism", "children":[ { "name":"01000 Enzymes [BR:stir01000]" }, { "name":"01001 Protein kinases [BR:stir01001]", "children":[ { "name":"DDW44_08595 serine\/threonine protein kinase\tK14949 pknG; serine\/threonine-protein kinase PknG [EC:2.7.11.1]" }, { "name":"DDW44_03870 pknB; Stk1 family PASTA domain-containing Ser\/Thr kinase\tK12132 prkC; eukaryotic-like serine\/threonine-protein kinase [EC:2.7.11.1]" }, { "name":"DDW44_05540 serine\/threonine protein kinase\tK12132 prkC; eukaryotic-like serine\/threonine-protein kinase [EC:2.7.11.1]" }, { "name":"DDW44_11915 serine\/threonine protein kinase\tK12132 prkC; eukaryotic-like serine\/threonine-protein kinase [EC:2.7.11.1]" }, { "name":"DDW44_15295 pknB; Stk1 family PASTA domain-containing Ser\/Thr kinase\tK12132 prkC; eukaryotic-like serine\/threonine-protein kinase [EC:2.7.11.1]" }, { "name":"DDW44_15485 serine\/threonine protein kinase\tK12132 prkC; eukaryotic-like serine\/threonine-protein kinase [EC:2.7.11.1]" }, { "name":"DDW44_15490 serine\/threonine protein kinase\tK12132 prkC; eukaryotic-like serine\/threonine-protein kinase [EC:2.7.11.1]" }, { "name":"DDW44_15690 serine\/threonine protein kinase\tK12132 prkC; eukaryotic-like serine\/threonine-protein kinase [EC:2.7.11.1]" }, { "name":"DDW44_18345 serine\/threonine protein kinase\tK12132 prkC; eukaryotic-like serine\/threonine-protein kinase [EC:2.7.11.1]" }, { "name":"DDW44_18355 serine\/threonine protein kinase\tK12132 prkC; eukaryotic-like serine\/threonine-protein kinase [EC:2.7.11.1]" }, { "name":"DDW44_28030 serine\/threonine protein kinase\tK12132 prkC; eukaryotic-like serine\/threonine-protein kinase [EC:2.7.11.1]" }, { "name":"DDW44_09955 serine\/threonine protein kinase\tK08884 K08884; serine\/threonine protein kinase, bacterial [EC:2.7.11.1]" }, { "name":"DDW44_09960 serine\/threonine protein kinase\tK08884 K08884; serine\/threonine protein kinase, bacterial [EC:2.7.11.1]" }, { "name":"DDW44_25815 hypothetical protein\tK25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]" }, { "name":"DDW44_14110 two-component sensor histidine kinase\tK07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]" }, { "name":"DDW44_23630 histidine kinase\tK07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]" }, { "name":"DDW44_06570 two-component sensor histidine kinase\tK07653 mprB; two-component system, OmpR family, sensor histidine kinase MprB [EC:2.7.13.3]" }, { "name":"DDW44_10085 two-component sensor histidine kinase\tK07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]" }, { "name":"DDW44_18950 two-component sensor histidine kinase\tK07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]" }, { "name":"DDW44_04310 two-component sensor histidine kinase\tK07655 prrB; two-component system, OmpR family, sensor histidine kinase PrrB [EC:2.7.13.3]" }, { "name":"DDW44_14490 two-component sensor histidine kinase\tK02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]" }, { "name":"DDW44_12625 sensor histidine kinase\tK07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]" }, { "name":"DDW44_14230 two-component sensor histidine kinase\tK07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]" }, { "name":"DDW44_15740 histidine kinase\tK07682 devS; two-component system, NarL family, sensor histidine kinase DevS [EC:2.7.13.3]" }, { "name":"DDW44_28560 histidine kinase\tK07682 devS; two-component system, NarL family, sensor histidine kinase DevS [EC:2.7.13.3]" }, { "name":"DDW44_00305 hypothetical protein\tK02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3]" }, { "name":"DDW44_23380 histidine kinase\tK02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3]" }, { "name":"DDW44_28350 sensor histidine kinase\tK02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]" }, { "name":"DDW44_20490 ATPase\tK00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3]" } ] }, { "name":"01009 Protein phosphatases and associated proteins [BR:stir01009]", "children":[ { "name":"DDW44_10155 adenosylhomocysteinase\tK01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]" }, { "name":"DDW44_04965 MerR family DNA-binding transcriptional regulator\tK20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]" }, { "name":"DDW44_05130 serine\/threonine protein phosphatase\tK20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]" }, { "name":"DDW44_15310 serine\/threonine-protein phosphatase\tK20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]" }, { "name":"DDW44_07470 serB; phosphoserine phosphatase SerB\tK01079 serB; phosphoserine phosphatase [EC:3.1.3.3]" } ] }, { "name":"01002 Peptidases and inhibitors [BR:stir01002]", "children":[ { "name":"DDW44_03620 signal peptidase II\tK03101 lspA; signal peptidase II [EC:3.4.23.36]" }, { "name":"DDW44_19530 prepilin peptidase\tK02654 pilD; leader peptidase (prepilin peptidase) \/ N-methyltransferase [EC:3.4.23.43 2.1.1.-]" }, { "name":"DDW44_00705 peptidase M52\tK03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]" }, { "name":"DDW44_00975 protease\tK03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]" }, { "name":"DDW44_15730 peptidase M52\tK03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]" }, { "name":"DDW44_18380 GMP synthase (glutamine-hydrolyzing)\tK01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]" }, { "name":"DDW44_02130 gamma-glutamyl-gamma-aminobutyrate hydrolase\tK07010 K07010; putative glutamine amidotransferase" }, { "name":"DDW44_04000 hypothetical protein\tK21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]" }, { "name":"DDW44_04005 hypothetical protein\tK21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]" }, { "name":"DDW44_06410 glycoside hydrolase\tK21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]" }, { "name":"DDW44_17445 glycoside hydrolase\tK21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]" }, { "name":"DDW44_18425 hypothetical protein\tK21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]" }, { "name":"DDW44_18435 glycoside hydrolase\tK21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]" }, { "name":"DDW44_20760 hypothetical protein\tK21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]" }, { "name":"DDW44_14165 amidophosphoribosyltransferase\tK00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]" }, { "name":"DDW44_03385 glutamate synthase large subunit\tK00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]" }, { "name":"DDW44_09020 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing)\tK00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]" }, { "name":"DDW44_18210 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing)\tK00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]" }, { "name":"DDW44_25440 asnB; asparagine synthase (glutamine-hydrolyzing)\tK01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]" }, { "name":"DDW44_31105 asnB; asparagine synthase (glutamine-hydrolyzing)\tK01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]" }, { "name":"DDW44_10030 peptidase\tK05520 yhbO; deglycase [EC:3.5.1.124]" }, { "name":"DDW44_29345 protease\tK05520 yhbO; deglycase [EC:3.5.1.124]" }, { "name":"DDW44_15275 class E sortase\tK07284 srtA; sortase A [EC:3.4.22.70]" }, { "name":"DDW44_15285 class E sortase\tK07284 srtA; sortase A [EC:3.4.22.70]" }, { "name":"DDW44_03270 pepN; aminopeptidase N\tK01256 pepN; aminopeptidase N [EC:3.4.11.2]" }, { "name":"DDW44_08470 pepN; aminopeptidase N\tK01256 pepN; aminopeptidase N [EC:3.4.11.2]" }, { "name":"DDW44_08490 pepN; aminopeptidase N\tK01256 pepN; aminopeptidase N [EC:3.4.11.2]" }, { "name":"DDW44_09625 protease\tK09607 ina; immune inhibitor A [EC:3.4.24.-]" }, { "name":"DDW44_24170 collagenase\tK01387 colA; microbial collagenase [EC:3.4.24.3]" }, { "name":"DDW44_19425 carboxypeptidase\tK05996 cpt; carboxypeptidase T [EC:3.4.17.18]" }, { "name":"DDW44_20430 peptidase M15\tK08640 E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]" }, { "name":"DDW44_10980 D-alanyl-D-alanine dipeptidase\tK08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]" }, { "name":"DDW44_04200 leucyl aminopeptidase\tK01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]" }, { "name":"DDW44_10320 membrane dipeptidase\tK01273 DPEP; membrane dipeptidase [EC:3.4.13.19]" }, { "name":"DDW44_06270 succinyl-diaminopimelate desuccinylase\tK01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]" }, { "name":"DDW44_19970 succinyl-diaminopimelate desuccinylase\tK01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]" }, { "name":"DDW44_29925 dipeptidase\tK23980 tpdA; cysteinylglycine-S-conjugate dipeptidase [EC:3.4.13.23]" }, { "name":"DDW44_04560 map; type I methionyl aminopeptidase\tK01265 map; methionyl aminopeptidase [EC:3.4.11.18]" }, { "name":"DDW44_18110 map; type I methionyl aminopeptidase\tK01265 map; methionyl aminopeptidase [EC:3.4.11.18]" }, { "name":"DDW44_26180 map; type I methionyl aminopeptidase\tK01265 map; methionyl aminopeptidase [EC:3.4.11.18]" }, { "name":"DDW44_01550 Xaa-Pro aminopeptidase\tK01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]" }, { "name":"DDW44_14675 Xaa-Pro aminopeptidase\tK01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]" }, { "name":"DDW44_24160 Xaa-Pro aminopeptidase\tK01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]" }, { "name":"DDW44_17555 Leupeptin-inactivating enzyme 1\tK19702 E3.4.11.24; aminopeptidase S [EC:3.4.11.24]" }, { "name":"DDW44_14400 amidohydrolase\tK28939 lap; leucyl aminopeptidase [EC:3.4.11.1]" }, { "name":"DDW44_16775 cell division protein FtsH\tK03798 ftsH; cell division protease FtsH [EC:3.4.24.-]" }, { "name":"DDW44_22175 ATP-dependent metallopeptidase FtsH\/Yme1\/Tma family protein\tK03798 ftsH; cell division protease FtsH [EC:3.4.24.-]" }, { "name":"DDW44_17640 zinc metalloprotease HtpX\tK03799 htpX; heat shock protein HtpX [EC:3.4.24.-]" }, { "name":"DDW44_09295 hypothetical protein\tK16922 yydH; putative peptide zinc metalloprotease protein" }, { "name":"DDW44_09920 hypothetical protein\tK16922 yydH; putative peptide zinc metalloprotease protein" }, { "name":"DDW44_26415 peptide ABC transporter substrate-binding protein\tK16203 dppA1; D-amino peptidase [EC:3.4.11.-]" }, { "name":"DDW44_01450 M56 family peptidase\tK02172 blaR1; bla regulator protein blaR1" }, { "name":"DDW44_06780 PrsW family intramembrane metalloprotease\tK24131 prsW; protease PrsW [EC:3.4.-.-]" }, { "name":"DDW44_06560 serine protease\tK08372 pepD; putative serine protease PepD [EC:3.4.21.-]" }, { "name":"DDW44_14645 protease\tK08372 pepD; putative serine protease PepD [EC:3.4.21.-]" }, { "name":"DDW44_20020 protease\tK08372 pepD; putative serine protease PepD [EC:3.4.21.-]" }, { "name":"DDW44_29475 S1 family peptidase\tK18544 sprA; streptogrisin A [EC:3.4.21.80]" }, { "name":"DDW44_07060 serine protease\tK18545 sprB; streptogrisin B [EC:3.4.21.81]" }, { "name":"DDW44_07015 serine protease\tK18547 sprD; streptogrisin D [EC:3.4.21.-]" }, { "name":"DDW44_24505 serine protease\tK18547 sprD; streptogrisin D [EC:3.4.21.-]" }, { "name":"DDW44_28915 serine protease\tK18547 sprD; streptogrisin D [EC:3.4.21.-]" }, { "name":"DDW44_06165 peptidase S8\tK01342 aprE; subtilisin [EC:3.4.21.62]" }, { "name":"DDW44_27615 protease\tK14645 K14645; serine protease [EC:3.4.21.-]" }, { "name":"DDW44_22850 mycP; type VII secretion-associated serine protease mycosin\tK14743 mycP; membrane-anchored mycosin MYCP [EC:3.4.21.-]" }, { "name":"DDW44_19910 S9 family peptidase\tK01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]" }, { "name":"DDW44_12865 hypothetical protein\tK07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5\/6) [EC:3.4.16.4]" }, { "name":"DDW44_15520 D-alanyl-D-alanine carboxypeptidase\tK07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5\/6) [EC:3.4.16.4]" }, { "name":"DDW44_18670 D-alanyl-D-alanine carboxypeptidase\tK07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5\/6) [EC:3.4.16.4]" }, { "name":"DDW44_23085 penicillin-binding protein\tK07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5\/6) [EC:3.4.16.4]" }, { "name":"DDW44_16750 dacB; D-alanyl-D-alanine carboxypeptidase\/D-alanyl-D-alanine-endopeptidase\tK07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase\/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]" }, { "name":"DDW44_16950 dacB; D-alanyl-D-alanine carboxypeptidase\/D-alanyl-D-alanine-endopeptidase\tK07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase\/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]" }, { "name":"DDW44_08390 clpP; ATP-dependent Clp protease proteolytic subunit\tK01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]" }, { "name":"DDW44_08395 ATP-dependent Clp protease proteolytic subunit\tK01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]" }, { "name":"DDW44_10450 ATP-dependent Clp protease proteolytic subunit\tK01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]" }, { "name":"DDW44_03195 Xaa-Pro dipeptidase\tK01281 pepX; X-Pro dipeptidyl-peptidase [EC:3.4.14.11]" }, { "name":"DDW44_20710 lon; endopeptidase La\tK01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]" }, { "name":"DDW44_09675 hypothetical protein\tK07177 K07177; Lon-like protease" }, { "name":"DDW44_20295 PDZ\/DHR\/GLGF domain-containing protein\tK07177 K07177; Lon-like protease" }, { "name":"DDW44_23270 transcriptional repressor LexA\tK01356 lexA; repressor LexA [EC:3.4.21.88]" }, { "name":"DDW44_22215 lepB; signal peptidase I\tK03100 lepB; signal peptidase I [EC:3.4.21.89]" }, { "name":"DDW44_22225 lepB; signal peptidase I\tK03100 lepB; signal peptidase I [EC:3.4.21.89]" }, { "name":"DDW44_22230 lepB; signal peptidase I\tK03100 lepB; signal peptidase I [EC:3.4.21.89]" }, { "name":"DDW44_15850 pip; prolyl aminopeptidase\tK01259 pip; proline iminopeptidase [EC:3.4.11.5]" }, { "name":"DDW44_13025 epoxide hydrolase\tK27108 ephA_B; epoxide hydrolase A\/B [EC:3.3.2.-]" }, { "name":"DDW44_09855 peptidase S41\tK03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]" }, { "name":"DDW44_12315 peptidase S41\tK08676 tri; tricorn protease [EC:3.4.21.-]" }, { "name":"DDW44_12435 penicillin acylase family protein\tK01434 pac; penicillin G amidase [EC:3.5.1.11]" }, { "name":"DDW44_19895 penicillin amidase\tK01434 pac; penicillin G amidase [EC:3.5.1.11]" }, { "name":"DDW44_04020 rhomboid family intramembrane serine protease\tK07059 rho2; rhomboid family protease [EC:3.4.21.105]" }, { "name":"DDW44_26430 LD-carboxypeptidase\tK01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]" }, { "name":"DDW44_02245 prcA; proteasome subunit alpha\tK03432 psmA; proteasome alpha subunit [EC:3.4.25.1]" }, { "name":"DDW44_02250 prcB; proteasome subunit beta\tK03433 psmB; proteasome beta subunit [EC:3.4.25.1]" }, { "name":"DDW44_26155 ggt; gamma-glutamyltransferase\tK00681 ggt; gamma-glutamyltranspeptidase \/ glutathione hydrolase [EC:2.3.2.2 3.4.19.13]" }, { "name":"DDW44_07530 peptidase C69\tK03568 tldD; TldD protein" } ] }, { "name":"01003 Glycosyltransferases [BR:stir01003]", "children":[ { "name":"DDW44_11150 polyprenol monophosphomannose synthase\tK00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]" }, { "name":"DDW44_19270 dolichol-phosphate mannosyltransferase\tK00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]" }, { "name":"DDW44_19310 dolichol-phosphate mannosyltransferase\tK00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]" }, { "name":"DDW44_12200 phospholipid carrier-dependent glycosyltransferase\tK00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]" }, { "name":"DDW44_11610 alpha-(1-2)-phosphatidylinositol mannosyltransferase\tK08256 pimA; phosphatidyl-myo-inositol alpha-mannosyltransferase [EC:2.4.1.345]" }, { "name":"DDW44_03985 alpha-(1-2)-phosphatidylinositol mannosyltransferase\tK13668 pimB; phosphatidyl-myo-inositol dimannoside synthase [EC:2.4.1.346]" }, { "name":"DDW44_11090 glycosyl transferase\tK14335 pimC; alpha-1,6-mannosyltransferase [EC:2.4.1.-]" }, { "name":"DDW44_11095 glycosyl transferase family 1\tK12583 mgtA; phosphatidylinositol alpha 1,6-mannosyltransferase [EC:2.4.1.-]" }, { "name":"DDW44_19595 penicillin-binding protein\tK05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]" }, { "name":"DDW44_03685 ftsW; putative lipid II flippase FtsW\tK03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"DDW44_15305 cell division protein FtsW\tK03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"DDW44_20795 cell division protein FtsW\tK03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"DDW44_08335 rod shape-determining protein RodA\tK05837 rodA; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"DDW44_25905 glycosyltransferase\tK05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187]" }, { "name":"DDW44_21015 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase\tK02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate\/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]" }, { "name":"DDW44_19380 hypothetical protein\tK14339 mptB; alpha-1,6-mannosyltransferase [EC:2.4.1.-]" }, { "name":"DDW44_04835 glycosyltransferase family 1 protein\tK26815 manT; MMP alpha-(1->4)-mannosyltransferase [EC:2.4.1.393]" }, { "name":"DDW44_13795 trehalose-6-phosphate synthase\tK00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]" }, { "name":"DDW44_13785 glucosyl-3-phosphoglycerate synthase\tK13693 gpgS; glucosyl-3-phosphoglycerate synthase [EC:2.4.1.266]" } ] }, { "name":"01005 Lipopolysaccharide biosynthesis proteins [BR:stir01005]", "children":[ { "name":"DDW44_01080 hypothetical protein\tK20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]" }, { "name":"DDW44_21015 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase\tK02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate\/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]" } ] }, { "name":"01011 Peptidoglycan biosynthesis and degradation proteins [BR:stir01011]", "children":[ { "name":"DDW44_09760 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase\tK00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]" }, { "name":"DDW44_24220 UDP-N-acetylglucosamine 1-carboxyvinyltransferase\tK00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]" }, { "name":"DDW44_17880 UDP-N-acetylenolpyruvoylglucosamine reductase\tK00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]" }, { "name":"DDW44_24540 UDP-N-acetylmuramate--L-alanine ligase\tK01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]" }, { "name":"DDW44_03690 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase\tK01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]" }, { "name":"DDW44_03705 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase\tK01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]" }, { "name":"DDW44_22040 D-alanine--D-alanine ligase A\tK01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]" }, { "name":"DDW44_18225 alanine racemase\tK01775 alr; alanine racemase [EC:5.1.1.1]" }, { "name":"DDW44_30030 glutamate racemase\tK01776 murI; glutamate racemase [EC:5.1.1.3]" }, { "name":"DDW44_26430 LD-carboxypeptidase\tK01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]" }, { "name":"DDW44_03695 phospho-N-acetylmuramoyl-pentapeptide-transferase\tK01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]" }, { "name":"DDW44_03680 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase\tK02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]" }, { "name":"DDW44_10720 undecaprenyl-diphosphate phosphatase\tK06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]" }, { "name":"DDW44_06650 hypothetical protein\tK19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]" }, { "name":"DDW44_15000 mviN; murein biosynthesis integral membrane protein MurJ\tK03980 murJ; putative peptidoglycan lipid II flippase" }, { "name":"DDW44_19595 penicillin-binding protein\tK05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]" }, { "name":"DDW44_08340 mrdA; penicillin-binding protein 2\tK05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]" }, { "name":"DDW44_03710 cell division protein\tK03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]" }, { "name":"DDW44_02745 penicillin-binding protein\tK05364 pbpA; penicillin-binding protein A" }, { "name":"DDW44_15300 penicillin-binding protein\tK05364 pbpA; penicillin-binding protein A" }, { "name":"DDW44_20790 penicillin-binding protein\tK05364 pbpA; penicillin-binding protein A" }, { "name":"DDW44_23135 penicillin-binding protein\tK05364 pbpA; penicillin-binding protein A" }, { "name":"DDW44_12865 hypothetical protein\tK07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5\/6) [EC:3.4.16.4]" }, { "name":"DDW44_15520 D-alanyl-D-alanine carboxypeptidase\tK07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5\/6) [EC:3.4.16.4]" }, { "name":"DDW44_18670 D-alanyl-D-alanine carboxypeptidase\tK07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5\/6) [EC:3.4.16.4]" }, { "name":"DDW44_23085 penicillin-binding protein\tK07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5\/6) [EC:3.4.16.4]" }, { "name":"DDW44_16750 dacB; D-alanyl-D-alanine carboxypeptidase\/D-alanyl-D-alanine-endopeptidase\tK07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase\/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]" }, { "name":"DDW44_16950 dacB; D-alanyl-D-alanine carboxypeptidase\/D-alanyl-D-alanine-endopeptidase\tK07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase\/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]" }, { "name":"DDW44_03685 ftsW; putative lipid II flippase FtsW\tK03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"DDW44_15305 cell division protein FtsW\tK03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"DDW44_20795 cell division protein FtsW\tK03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"DDW44_08335 rod shape-determining protein RodA\tK05837 rodA; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"DDW44_10980 D-alanyl-D-alanine dipeptidase\tK08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]" }, { "name":"DDW44_20430 peptidase M15\tK08640 E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]" }, { "name":"DDW44_04000 hypothetical protein\tK21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]" }, { "name":"DDW44_04005 hypothetical protein\tK21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]" }, { "name":"DDW44_06410 glycoside hydrolase\tK21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]" }, { "name":"DDW44_17445 glycoside hydrolase\tK21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]" }, { "name":"DDW44_18425 hypothetical protein\tK21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]" }, { "name":"DDW44_18435 glycoside hydrolase\tK21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]" }, { "name":"DDW44_20760 hypothetical protein\tK21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]" }, { "name":"DDW44_15275 class E sortase\tK07284 srtA; sortase A [EC:3.4.22.70]" }, { "name":"DDW44_15285 class E sortase\tK07284 srtA; sortase A [EC:3.4.22.70]" }, { "name":"DDW44_11480 mltG; endolytic transglycosylase MltG\tK07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]" }, { "name":"DDW44_04775 N-acetylmuramoyl-L-alanine amidase\tK01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]" } ] }, { "name":"01004 Lipid biosynthesis proteins [BR:stir01004]", "children":[ { "name":"DDW44_06080 ACP S-malonyltransferase\tK00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]" }, { "name":"DDW44_00190 hypothetical protein\tK00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]" }, { "name":"DDW44_06085 ketoacyl-ACP synthase III\tK00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]" }, { "name":"DDW44_26565 ketoacyl-ACP synthase III\tK00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]" }, { "name":"DDW44_27770 3-oxoacyl-ACP synthase\tK00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]" }, { "name":"DDW44_06095 fabF; beta-ketoacyl-[acyl-carrier-protein] synthase II\tK09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]" }, { "name":"DDW44_07505 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"DDW44_07630 KR domain-containing protein\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"DDW44_10785 3-oxoacyl-ACP reductase FabG\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"DDW44_13715 G-D-S-L family lipolytic protein\tK10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]" }, { "name":"DDW44_08940 tesB; acyl-CoA thioesterase II\tK10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.20]" }, { "name":"DDW44_07500 enoyl-[acyl-carrier-protein] reductase FabI\tK11611 inhA; meromycolic acid enoyl-[acyl-carrier protein] reductase [EC:1.3.1.118]" }, { "name":"DDW44_12085 acyl-CoA desaturase\tK00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]" }, { "name":"DDW44_27015 acyl-ACP desaturase\tK03921 FAB2; acyl-[acyl-carrier protein] desaturase [EC:1.14.19.2 1.14.19.11 1.14.19.26]" }, { "name":"DDW44_27780 beta-ketoacyl-[acyl-carrier-protein] synthase family protein\tK05551 actI1; minimal PKS ketosynthase (KS\/KS alpha) [EC:2.3.1.- 2.3.1.260 2.3.1.235]" }, { "name":"DDW44_27775 ketosynthase chain-length factor\tK05552 actI2; minimal PKS chain-length factor (CLF\/KS beta) [EC:2.3.1.- 2.3.1.260 2.3.1.235]" }, { "name":"DDW44_27915 acyl carrier protein\tK05553 actI3; minimal PKS acyl carrier protein" }, { "name":"DDW44_27855 3-oxoacyl-ACP reductase FabG\tK12420 actIII; ketoreductase [EC:1.1.1.-]" }, { "name":"DDW44_27850 actinorhodin polyketide synthase\tK05554 actVII; aromatase [EC:4.2.1.-]" }, { "name":"DDW44_16365 acs; acetate--CoA ligase\tK01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]" }, { "name":"DDW44_10965 acetoacetate--CoA ligase\tK01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]" }, { "name":"DDW44_13220 pimeloyl-CoA synthetase\tK24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]" }, { "name":"DDW44_02530 acyl-CoA synthetase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"DDW44_03975 long-chain fatty acid--CoA ligase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"DDW44_06280 long-chain fatty acid--CoA ligase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"DDW44_08095 long-chain fatty acid--CoA ligase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"DDW44_15655 acyl-CoA synthetase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"DDW44_26555 long-chain fatty acid--CoA ligase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"DDW44_31240 AMP-dependent synthetase\tK12424 fadD22; 4-hydroxybenzoate adenylyltransferase [EC:6.2.1.50]" }, { "name":"DDW44_01705 1-acyl-sn-glycerol-3-phosphate acyltransferase\tK00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]" }, { "name":"DDW44_01905 1-acyl-sn-glycerol-3-phosphate acyltransferase\tK00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]" }, { "name":"DDW44_03930 1-acyl-sn-glycerol-3-phosphate acyltransferase\tK00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]" }, { "name":"DDW44_07125 1-acyl-sn-glycerol-3-phosphate acyltransferase\tK00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]" } ] }, { "name":"01008 Polyketide biosynthesis proteins [BR:stir01008]", "children":[ { "name":"DDW44_31470 erythronolide synthase\tK15314 sgcE; enediyne polyketide synthase" }, { "name":"DDW44_01260 beta-ACP synthase\tK14667 whiEIII; minimal PKS ketosynthase (KS\/KS alpha) [EC:2.3.1.-]" }, { "name":"DDW44_01265 ketosynthase chain-length factor\tK14668 whiEIV; minimal PKS chain-length factor (CLF\/KS beta) [EC:2.3.1.-]" }, { "name":"DDW44_01270 acyl carrier protein\tK14669 whiEV; minimal PKS acyl carrier protein" }, { "name":"DDW44_01275 polyketide cyclase\tK14670 whiEVI; aromatase" }, { "name":"DDW44_01280 TcmI family type II polyketide cyclase\tK14671 whiEVII; cyclase" }, { "name":"DDW44_27780 beta-ketoacyl-[acyl-carrier-protein] synthase family protein\tK05551 actI1; minimal PKS ketosynthase (KS\/KS alpha) [EC:2.3.1.- 2.3.1.260 2.3.1.235]" }, { "name":"DDW44_27775 ketosynthase chain-length factor\tK05552 actI2; minimal PKS chain-length factor (CLF\/KS beta) [EC:2.3.1.- 2.3.1.260 2.3.1.235]" }, { "name":"DDW44_27915 acyl carrier protein\tK05553 actI3; minimal PKS acyl carrier protein" }, { "name":"DDW44_27855 3-oxoacyl-ACP reductase FabG\tK12420 actIII; ketoreductase [EC:1.1.1.-]" }, { "name":"DDW44_27850 actinorhodin polyketide synthase\tK05554 actVII; aromatase [EC:4.2.1.-]" }, { "name":"DDW44_27835 cyclase\tK14250 oxyN; cyclase" }, { "name":"DDW44_24850 type III polyketide synthase\tK19580 rppA; 1,3,6,8-tetrahydroxynaphthalene synthase [EC:2.3.1.233]" }, { "name":"DDW44_23095 non-ribosomal peptide synthetase\tK12743 PCBAB; N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase [EC:6.3.2.26]" }, { "name":"DDW44_27565 MbtH family protein\tK05375 mbtH; MbtH protein" }, { "name":"DDW44_31360 MbtH family protein\tK05375 mbtH; MbtH protein" }, { "name":"DDW44_27640 4'-phosphopantetheinyl transferase\tK02362 entD; enterobactin synthetase component D \/ holo-[acyl-carrier protein] synthase [EC:6.3.2.14 2.7.8.7]" }, { "name":"DDW44_31465 acyl-CoA thioesterase\tK15315 sgcE10; enediyne core biosynthesis thioesterase" }, { "name":"DDW44_00810 cytochrome P450\tK20420 ncsB3; 2-hydroxy-5-methyl-1-naphthoate 7-hydroxylase [EC:1.14.15.31]" }, { "name":"DDW44_29175 cytochrome P450\tK20420 ncsB3; 2-hydroxy-5-methyl-1-naphthoate 7-hydroxylase [EC:1.14.15.31]" }, { "name":"DDW44_31375 cytochrome P450\tK20420 ncsB3; 2-hydroxy-5-methyl-1-naphthoate 7-hydroxylase [EC:1.14.15.31]" }, { "name":"DDW44_31400 Pyoverdin chromophore biosynthetic protein pvcC\tK21184 sgcC; two-component FAD-dependent monooxygenase [EC:1.14.14.15 1.14.14.-]" }, { "name":"DDW44_03130 hydrolase\tK21159 sgcF; epoxide hydrolase" }, { "name":"DDW44_31270 epoxide hydrolase\tK21159 sgcF; epoxide hydrolase" }, { "name":"DDW44_27785 antibiotic biosynthesis monooxygenase\tK15941 snoaB; deoxynogalonate \/ 12-deoxyaklanonic acid monooxygenase [EC:1.13.12.22 1.13.12.-]" }, { "name":"DDW44_01255 cupin domain-containing protein\tK14673 whiEII; putative monooxygenase" }, { "name":"DDW44_01245 monooxygenase\tK14672 whiEVIII; putative polyketide hydroxylase" }, { "name":"DDW44_31335 methyltransferase\tK21178 sgcD4; O-methyltransferase [EC:2.1.1.-]" }, { "name":"DDW44_01285 methyltransferase\tK14251 oxyF; C-methyltransferase [EC:2.1.1.-]" }, { "name":"DDW44_27905 methyltransferase\tK15942 snoaC; O-methyltransferase \/ aklanonic acid methyltransferase [EC:2.1.1.- 2.1.1.288]" }, { "name":"DDW44_31490 enediyne biosynthesis protein\tK21160 sgcE2; enediyne biosynthesis protein E2" }, { "name":"DDW44_31485 DUF1702 domain-containing protein\tK21161 sgcE3; enediyne biosynthesis protein E3" }, { "name":"DDW44_31480 RNA-binding protein\tK21162 sgcE4; enediyne biosynthesis protein E4" }, { "name":"DDW44_31475 enediyne biosynthesis protein\tK21163 sgcE5; enediyne biosynthesis protein E5" }, { "name":"DDW44_31455 cytochrome P450\tK21164 sgcE7; enediyne biosynthesis protein E7" }, { "name":"DDW44_31440 regulator\tK21165 sgcE8; enediyne biosynthesis protein E8" }, { "name":"DDW44_31435 GMC family oxidoreductase\tK21166 sgcE9; enediyne biosynthesis protein E9" }, { "name":"DDW44_31425 TIGR03084 family protein\tK21167 sgcE11; enediyne biosynthesis protein E11" }, { "name":"DDW44_31365 peptide synthase\tK21186 sgcC5; condensation enzyme" }, { "name":"DDW44_24265 flavin reductase\tK21185 sgcE6; flavin reductase" }, { "name":"DDW44_31460 flavin reductase\tK21185 sgcE6; flavin reductase" }, { "name":"DDW44_27900 SnoaL\/DnrD family polyketide biosynthesis methyl ester cyclase\tK15943 snoaL; nogalonic acid methyl ester cyclase \/ aklanonic acid methyl ester cyclase [EC:5.5.1.26 5.5.1.23]" }, { "name":"DDW44_27845 KR domain-containing protein\tK15944 snoaF; nogalaviketone\/aklaviketone reductase [EC:1.1.1.- 1.1.1.362]" }, { "name":"DDW44_23090 penicillin synthase\tK04126 PCBC; isopenicillin-N synthase [EC:1.21.3.1]" }, { "name":"DDW44_23120 aminotransferase\tK04127 cefD; isopenicillin-N epimerase [EC:5.1.1.17]" } ] }, { "name":"01006 Prenyltransferases [BR:stir01006]", "children":[ { "name":"DDW44_20550 polyprenyl synthetase\tK13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]" }, { "name":"DDW44_25165 polyprenyl diphosphate synthase\tK13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]" }, { "name":"DDW44_27255 dimethylallyltranstransferase\tK13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]" }, { "name":"DDW44_19550 isoprenyl transferase\tK12503 uppS; short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68]" }, { "name":"DDW44_07930 isoprenyl transferase\tK00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]" }, { "name":"DDW44_25175 phytoene synthase\tK02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]" }, { "name":"DDW44_27245 hpnD; squalene synthase HpnD\tK02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]" }, { "name":"DDW44_23205 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA\tK00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]" }, { "name":"DDW44_17345 4-hydroxybenzoate octaprenyltransferase\tK03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]" }, { "name":"DDW44_02870 protoheme IX farnesyltransferase\tK02257 COX10; heme o synthase [EC:2.5.1.141]" }, { "name":"DDW44_18660 decaprenyl-phosphate phosphoribosyltransferase\tK14136 K14136; decaprenyl-phosphate phosphoribosyltransferase [EC:2.4.2.45]" } ] }, { "name":"01007 Amino acid related enzymes [BR:stir01007]", "children":[ { "name":"DDW44_17200 lysine--tRNA ligase\tK04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]" }, { "name":"DDW44_21950 glutamate--tRNA ligase\tK01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]" }, { "name":"DDW44_07540 tyrosine--tRNA ligase\tK01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]" }, { "name":"DDW44_17080 trpS; tryptophan--tRNA ligase\tK01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]" }, { "name":"DDW44_18630 trpS; tryptophan--tRNA ligase\tK01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]" }, { "name":"DDW44_14070 cysteine--tRNA ligase\tK01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]" }, { "name":"DDW44_17195 arginine--tRNA ligase\tK01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]" }, { "name":"DDW44_20945 hypothetical protein\tK01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]" }, { "name":"DDW44_04625 methionine--tRNA ligase\tK01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]" }, { "name":"DDW44_04885 methionine--tRNA ligase\tK01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]" }, { "name":"DDW44_03635 isoleucine--tRNA ligase\tK01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]" }, { "name":"DDW44_08375 valine--tRNA ligase\tK01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]" }, { "name":"DDW44_08150 leucine--tRNA ligase\tK01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]" }, { "name":"DDW44_16810 hypothetical protein\tK04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]" }, { "name":"DDW44_28365 lysS; bifunctional lysylphosphatidylglycerol synthetase\/lysine--tRNA ligase LysX\tK04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]" }, { "name":"DDW44_15635 aspartate--tRNA ligase\tK01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]" }, { "name":"DDW44_11530 histidine--tRNA ligase\tK01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]" }, { "name":"DDW44_07905 glycine--tRNA ligase\tK01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]" }, { "name":"DDW44_14725 serine--tRNA ligase\tK01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]" }, { "name":"DDW44_22735 proline--tRNA ligase\tK01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]" }, { "name":"DDW44_11645 threonine--tRNA ligase\tK01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]" }, { "name":"DDW44_11495 alanine--tRNA ligase\tK01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]" }, { "name":"DDW44_02045 phenylalanine--tRNA ligase subunit alpha\tK01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]" }, { "name":"DDW44_02040 phenylalanine--tRNA ligase subunit beta\tK01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]" }, { "name":"DDW44_16535 aminotransferase\tK00812 aspB; aspartate aminotransferase [EC:2.6.1.1]" }, { "name":"DDW44_17890 aspartate aminotransferase\tK00812 aspB; aspartate aminotransferase [EC:2.6.1.1]" }, { "name":"DDW44_20585 aminotransferase\tK00812 aspB; aspartate aminotransferase [EC:2.6.1.1]" }, { "name":"DDW44_03080 pyridoxal phosphate-dependent aminotransferase\tK14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]" }, { "name":"DDW44_19340 aminotransferase\tK14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]" }, { "name":"DDW44_05400 putative succinyldiaminopimelate transaminase DapC\tK14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]" }, { "name":"DDW44_02685 threonine-phosphate decarboxylase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"DDW44_03515 histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"DDW44_14815 hisC; histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"DDW44_29230 hisC; histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"DDW44_29645 glycine C-acetyltransferase\tK00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]" }, { "name":"DDW44_10480 8-amino-7-oxononanoate synthase\tK00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]" }, { "name":"DDW44_05445 transcriptional regulator\tK14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]" }, { "name":"DDW44_23100 L-lysine 6-transaminase\tK03918 lat; L-lysine 6-transaminase [EC:2.6.1.36]" }, { "name":"DDW44_18620 rocD; ornithine--oxo-acid transaminase\tK00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13]" }, { "name":"DDW44_27275 aspartate aminotransferase family protein\tK00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13]" }, { "name":"DDW44_01970 acetylornithine transaminase\tK00821 argD; acetylornithine\/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]" }, { "name":"DDW44_22435 gabT; 4-aminobutyrate--2-oxoglutarate transaminase\tK07250 gabT; 4-aminobutyrate aminotransferase \/ (S)-3-amino-2-methylpropionate transaminase \/ 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]" }, { "name":"DDW44_26205 aspartate aminotransferase family protein\tK00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]" }, { "name":"DDW44_02710 ectB; diaminobutyrate--2-oxoglutarate transaminase\tK00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]" }, { "name":"DDW44_23245 aspartate aminotransferase family protein\tK00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]" }, { "name":"DDW44_10490 adenosylmethionine--8-amino-7-oxononanoate transaminase\tK00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]" }, { "name":"DDW44_17290 hemL; glutamate-1-semialdehyde-2,1-aminomutase\tK01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]" }, { "name":"DDW44_01770 4-amino-4-deoxychorismate lyase\tK00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]" }, { "name":"DDW44_21835 branched-chain amino acid aminotransferase\tK00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]" }, { "name":"DDW44_13505 serC; phosphoserine transaminase\tK00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]" } ] }, { "name":"00199 Cytochrome P450 [BR:stir00199]", "children":[ { "name":"DDW44_05615 steroid C27-monooxygenase\tK15981 CYP125A; cholest-4-en-3-one 26-monooxygenase [EC:1.14.15.29]" }, { "name":"DDW44_24845 cytochrome P450\tK13074 CYP158A2; biflaviolin synthase [EC:1.14.19.69]" }, { "name":"DDW44_24855 cytochrome P450\tK13074 CYP158A2; biflaviolin synthase [EC:1.14.19.69]" } ] }, { "name":"00194 Photosynthesis proteins [BR:stir00194]", "children":[ { "name":"DDW44_21065 F0F1 ATP synthase subunit epsilon\tK02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon" }, { "name":"DDW44_21060 atpD; F0F1 ATP synthase subunit beta\tK02112 ATPF1B; F-type H+\/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]" }, { "name":"DDW44_21055 F0F1 ATP synthase subunit gamma\tK02115 ATPF1G; F-type H+-transporting ATPase subunit gamma" }, { "name":"DDW44_21050 F0F1 ATP synthase subunit alpha\tK02111 ATPF1A; F-type H+\/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]" }, { "name":"DDW44_21045 F0F1 ATP synthase subunit delta\tK02113 ATPF1D; F-type H+-transporting ATPase subunit delta" }, { "name":"DDW44_21040 F0F1 ATP synthase subunit B\tK02109 ATPF0B; F-type H+-transporting ATPase subunit b" }, { "name":"DDW44_21035 atpE; ATP synthase F0 subunit C\tK02110 ATPF0C; F-type H+-transporting ATPase subunit c" }, { "name":"DDW44_21030 atpB; ATP synthase F0 subunit A\tK02108 ATPF0A; F-type H+-transporting ATPase subunit a" }, { "name":"DDW44_21025 hypothetical protein\tK02116 atpI; ATP synthase protein I" } ] } ] }, { "name":"09182 Protein families: genetic information processing", "children":[ { "name":"03000 Transcription factors [BR:stir03000]", "children":[ { "name":"DDW44_31450 AraC family transcriptional regulator\tK07506 K07506; AraC family transcriptional regulator" }, { "name":"DDW44_26270 DNA-3-methyladenine glycosylase\tK13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response \/ DNA-3-methyladenine glycosylase II [EC:3.2.2.21]" }, { "name":"DDW44_19580 hydrogen peroxide-inducible protein activator\tK04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator" }, { "name":"DDW44_00775 DeoR\/GlpR transcriptional regulator\tK02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor" }, { "name":"DDW44_12550 D-beta-D-heptose 1-phosphate adenosyltransferase\tK03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor" }, { "name":"DDW44_06555 LacI family transcriptional regulator\tK02529 galR; LacI family transcriptional regulator, galactose operon repressor" }, { "name":"DDW44_29895 LacI family transcriptional regulator\tK02529 galR; LacI family transcriptional regulator, galactose operon repressor" }, { "name":"DDW44_30285 LacI family transcriptional regulator\tK02529 galR; LacI family transcriptional regulator, galactose operon repressor" }, { "name":"DDW44_02240 LacI family transcriptional regulator\tK05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG" }, { "name":"DDW44_04430 LacI family transcriptional regulator\tK05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG" }, { "name":"DDW44_20460 GntR family transcriptional regulator\tK24969 dasR; GntR family transcriptional regulator, nutrient-sensing system regulator" }, { "name":"DDW44_13980 GntR family transcriptional regulator\tK03710 K03710; GntR family transcriptional regulator" }, { "name":"DDW44_16115 GntR family transcriptional regulator\tK03710 K03710; GntR family transcriptional regulator" }, { "name":"DDW44_23730 GntR family transcriptional regulator\tK03710 K03710; GntR family transcriptional regulator" }, { "name":"DDW44_00165 GntR family transcriptional regulator\tK00375 K00375; GntR family transcriptional regulator \/ MocR family aminotransferase" }, { "name":"DDW44_18600 GntR family transcriptional regulator\tK00375 K00375; GntR family transcriptional regulator \/ MocR family aminotransferase" }, { "name":"DDW44_06240 TetR family transcriptional regulator\tK16137 nemR; TetR\/AcrR family transcriptional regulator, transcriptional repressor for nem operon" }, { "name":"DDW44_01915 TetR\/AcrR family transcriptional regulator\tK18294 nfxB; TetR\/AcrR family transcriptional regulator, mexCD-oprJ operon repressor" }, { "name":"DDW44_10435 TetR\/AcrR family transcriptional regulator\tK21962 acnR; TetR\/AcrR family transcriptional regulator, transcriptional repressor of aconitase" }, { "name":"DDW44_04840 TetR\/AcrR family transcriptional regulator\tK22107 kstR; TetR\/AcrR family transcriptional regulator, cholesterol catabolism regulator" }, { "name":"DDW44_03345 TetR\/AcrR family transcriptional regulator\tK22108 kstR2; TetR\/AcrR family transcriptional regulator, cholesterol catabolism regulator" }, { "name":"DDW44_22350 Lrp\/AsnC family transcriptional regulator\tK03718 asnC; Lrp\/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA" }, { "name":"DDW44_10615 Lrp\/AsnC family transcriptional regulator\tK03719 lrp; Lrp\/AsnC family transcriptional regulator, leucine-responsive regulatory protein" }, { "name":"DDW44_11160 Lrp\/AsnC family transcriptional regulator\tK03719 lrp; Lrp\/AsnC family transcriptional regulator, leucine-responsive regulatory protein" }, { "name":"DDW44_17365 Lrp\/AsnC family transcriptional regulator\tK03719 lrp; Lrp\/AsnC family transcriptional regulator, leucine-responsive regulatory protein" }, { "name":"DDW44_30210 helix-turn-helix transcriptional regulator\tK24912 ramR; LuxR family transcriptional regulator, transcriptional activator for aerial hyphae formation" }, { "name":"DDW44_09945 LuxR family transcriptional regulator\tK03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein" }, { "name":"DDW44_28975 helix-turn-helix transcriptional regulator\tK03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein" }, { "name":"DDW44_02730 MarR family transcriptional regulator\tK22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator" }, { "name":"DDW44_01495 MarR family transcriptional regulator\tK23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator" }, { "name":"DDW44_07800 soxR; redox-sensitive transcriptional activator SoxR\tK13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR" }, { "name":"DDW44_05340 MerR family DNA-binding transcriptional regulator\tK13640 hspR; MerR family transcriptional regulator, heat shock protein HspR" }, { "name":"DDW44_25150 transcriptional regulator\tK22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator" }, { "name":"DDW44_06490 transcriptional repressor\tK03711 fur; Fur family transcriptional regulator, ferric uptake regulator" }, { "name":"DDW44_07925 transcriptional repressor\tK03711 fur; Fur family transcriptional regulator, ferric uptake regulator" }, { "name":"DDW44_20345 transcriptional repressor\tK22297 furA; Fur family transcriptional regulator, stress-responsive regulator" }, { "name":"DDW44_30205 transcriptional repressor\tK22297 furA; Fur family transcriptional regulator, stress-responsive regulator" }, { "name":"DDW44_12745 IclR family transcriptional regulator\tK13641 iclR; IclR family transcriptional regulator, acetate operon repressor" }, { "name":"DDW44_25955 IclR family transcriptional regulator\tK13641 iclR; IclR family transcriptional regulator, acetate operon repressor" }, { "name":"DDW44_16325 Crp\/Fnr family transcriptional regulator\tK10914 crp; CRP\/FNR family transcriptional regulator, cyclic AMP receptor protein" }, { "name":"DDW44_23995 Crp\/Fnr family transcriptional regulator\tK10914 crp; CRP\/FNR family transcriptional regulator, cyclic AMP receptor protein" }, { "name":"DDW44_26800 Rrf2 family transcriptional regulator\tK13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor" }, { "name":"DDW44_25075 ArsR family transcriptional regulator\tK03892 arsR; ArsR family transcriptional regulator, arsenate\/arsenite\/antimonite-responsive transcriptional repressor" }, { "name":"DDW44_14625 ArsR family transcriptional regulator\tK21885 cmtR; ArsR family transcriptional regulator, cadmium\/lead-responsive transcriptional repressor" }, { "name":"DDW44_09060 transcriptional regulator\tK21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator" }, { "name":"DDW44_25495 Cro\/Cl family transcriptional regulator\tK07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator" }, { "name":"DDW44_23015 XRE family transcriptional regulator\tK27043 clgR; XRE family transcriptional regulator, stress-response regulator" }, { "name":"DDW44_13400 metal-dependent transcriptional regulator\tK26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor" }, { "name":"DDW44_19060 biotin--[acetyl-CoA-carboxylase] ligase\tK03524 birA; BirA family transcriptional regulator, biotin operon repressor \/ biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]" }, { "name":"DDW44_07220 transcriptional regulator\tK06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]" }, { "name":"DDW44_30115 transcriptional regulator\tK21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR" }, { "name":"DDW44_13300 adenylate kinase\tK02019 modE; molybdate transport system regulatory protein" }, { "name":"DDW44_17165 redox-sensing transcriptional repressor Rex\tK01926 rex; redox-sensing transcriptional repressor" }, { "name":"DDW44_30545 hypothetical protein\tK27097 espR; ESX-1-secreted protein regulator" }, { "name":"DDW44_05565 transcriptional regulator\tK07727 K07727; putative transcriptional regulator" }, { "name":"DDW44_10205 WhiB family transcriptional regulator\tK18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator" }, { "name":"DDW44_16285 WhiB family transcriptional regulator\tK18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator" }, { "name":"DDW44_17795 hypothetical protein\tK18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator" }, { "name":"DDW44_18310 WhiB family transcriptional regulator\tK18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator" }, { "name":"DDW44_19630 WhiB family transcriptional regulator\tK18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator" }, { "name":"DDW44_20495 WhiB family transcriptional regulator\tK18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator" }, { "name":"DDW44_27005 WhiB family transcriptional regulator\tK18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator" }, { "name":"DDW44_28610 WhiB family transcriptional regulator\tK18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator" }, { "name":"DDW44_30180 WhiB family transcriptional regulator\tK18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator" }, { "name":"DDW44_20230 WhiB family transcriptional regulator\tK18958 whiB7; WhiB family transcriptional regulator, redox-sensing transcriptional regulator" }, { "name":"DDW44_06640 metal-sensitive transcriptional regulator\tK21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor" }, { "name":"DDW44_07290 transcriptional regulator\tK09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein" }, { "name":"DDW44_15180 hypothetical protein\tK22894 embR; SARP family transcriptional regulator, regulator of embCAB operon" }, { "name":"DDW44_23105 positive regulator\tK22894 embR; SARP family transcriptional regulator, regulator of embCAB operon" }, { "name":"DDW44_27910 transcriptional regulator\tK22894 embR; SARP family transcriptional regulator, regulator of embCAB operon" }, { "name":"DDW44_15035 chromosome partitioning protein ParB\tK03497 parB; ParB family transcriptional regulator, chromosome partitioning protein" }, { "name":"DDW44_30700 hypothetical protein\tK03497 parB; ParB family transcriptional regulator, chromosome partitioning protein" }, { "name":"DDW44_31540 chromosome partitioning protein ParB\tK03497 parB; ParB family transcriptional regulator, chromosome partitioning protein" }, { "name":"DDW44_14090 CarD family transcriptional regulator\tK07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription" }, { "name":"DDW44_01965 arginine repressor\tK03402 argR; transcriptional regulator of arginine metabolism" }, { "name":"DDW44_08065 heat-inducible transcriptional repressor HrcA\tK03705 hrcA; heat-inducible transcriptional repressor" }, { "name":"DDW44_00540 transcriptional regulator\tK02616 paaX; phenylacetic acid degradation operon negative regulatory protein" }, { "name":"DDW44_24140 PaaX family transcriptional regulator\tK02616 paaX; phenylacetic acid degradation operon negative regulatory protein" }, { "name":"DDW44_11425 bifunctional pyr operon transcriptional regulator\/uracil phosphoribosyltransferase PyrR\tK02825 pyrR; pyrimidine operon attenuation protein \/ uracil phosphoribosyltransferase [EC:2.4.2.9]" }, { "name":"DDW44_28110 hypothetical protein\tK07734 paiB; transcriptional regulator" }, { "name":"DDW44_09755 YqgE\/AlgH family protein\tK07735 algH; putative transcriptional regulator" }, { "name":"DDW44_03625 hypothetical protein\tK06204 dksA; RNA polymerase-binding transcription factor" }, { "name":"DDW44_12615 hypothetical protein\tK06204 dksA; RNA polymerase-binding transcription factor" }, { "name":"DDW44_23275 transcriptional repressor NrdR\tK07738 nrdR; transcriptional repressor NrdR" } ] }, { "name":"03021 Transcription machinery [BR:stir03021]", "children":[ { "name":"DDW44_13645 helicase\tK10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]" }, { "name":"DDW44_18135 DNA-directed RNA polymerase subunit alpha\tK03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]" }, { "name":"DDW44_17945 rpoB; DNA-directed RNA polymerase subunit beta\tK03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]" }, { "name":"DDW44_17950 DNA-directed RNA polymerase subunit beta'\tK03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]" }, { "name":"DDW44_11375 DNA-directed RNA polymerase subunit omega\tK03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]" }, { "name":"DDW44_07745 RNA polymerase subunit sigma-70\tK03086 rpoD; RNA polymerase primary sigma factor" }, { "name":"DDW44_23350 RNA polymerase sigma factor\tK03086 rpoD; RNA polymerase primary sigma factor" }, { "name":"DDW44_02175 RNA polymerase subunit sigma\tK03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily" }, { "name":"DDW44_09785 RNA polymerase subunit sigma\tK03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily" }, { "name":"DDW44_10010 RNA polymerase subunit sigma-24\tK03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily" }, { "name":"DDW44_10565 RNA polymerase subunit sigma-24\tK03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily" }, { "name":"DDW44_11975 SigE family RNA polymerase sigma factor\tK03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily" }, { "name":"DDW44_15010 RNA polymerase sigma factor SigM\tK03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily" }, { "name":"DDW44_17150 RNA polymerase subunit sigma-24\tK03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily" }, { "name":"DDW44_18320 RNA polymerase sigma factor ShbA\tK03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily" }, { "name":"DDW44_18780 RNA polymerase sigma factor\tK03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily" }, { "name":"DDW44_18900 RNA polymerase subunit sigma-70\tK03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily" }, { "name":"DDW44_19765 RNA polymerase sigma factor\tK03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily" }, { "name":"DDW44_20010 RNA polymerase sigma factor SigE\tK03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily" }, { "name":"DDW44_20400 RNA polymerase subunit sigma\tK03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily" }, { "name":"DDW44_25030 RNA polymerase subunit sigma\tK03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily" }, { "name":"DDW44_25200 siderophore-interacting protein\tK03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily" }, { "name":"DDW44_25410 RNA polymerase subunit sigma\tK03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily" }, { "name":"DDW44_28360 RNA polymerase subunit sigma\tK03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily" }, { "name":"DDW44_30575 hypothetical protein\tK03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily" }, { "name":"DDW44_30880 hypothetical protein\tK03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily" }, { "name":"DDW44_10380 B\/F\/G family RNA polymerase sigma-70 factor\tK03090 sigB; RNA polymerase sigma-B factor" }, { "name":"DDW44_14450 RNA polymerase sigma factor SigF\tK03090 sigB; RNA polymerase sigma-B factor" }, { "name":"DDW44_14455 B\/F\/G family RNA polymerase sigma-70 factor\tK03090 sigB; RNA polymerase sigma-B factor" }, { "name":"DDW44_20510 RNA polymerase sigma factor SigF\tK03090 sigB; RNA polymerase sigma-B factor" }, { "name":"DDW44_23800 B\/F\/G family RNA polymerase sigma-70 factor\tK03090 sigB; RNA polymerase sigma-B factor" }, { "name":"DDW44_25255 B\/F\/G family RNA polymerase sigma-70 factor\tK03090 sigB; RNA polymerase sigma-B factor" }, { "name":"DDW44_26765 B\/F\/G family RNA polymerase sigma-70 factor\tK03090 sigB; RNA polymerase sigma-B factor" }, { "name":"DDW44_27695 B\/F\/G family RNA polymerase sigma-70 factor\tK03090 sigB; RNA polymerase sigma-B factor" }, { "name":"DDW44_29335 B\/F\/G family RNA polymerase sigma-70 factor\tK03090 sigB; RNA polymerase sigma-B factor" }, { "name":"DDW44_22260 RNA polymerase sigma factor WhiG\tK02405 fliA; RNA polymerase sigma factor FliA" }, { "name":"DDW44_22760 transcription termination\/antitermination protein NusA\tK02600 nusA; transcription termination\/antitermination protein NusA" }, { "name":"DDW44_11435 transcription antitermination factor NusB\tK03625 nusB; transcription antitermination protein NusB" }, { "name":"DDW44_17905 transcription termination\/antitermination protein NusG\tK02601 nusG; transcription termination\/antitermination protein NusG" }, { "name":"DDW44_05780 alpha\/beta hydrolase\tK19707 rsbQ; sigma-B regulation protein RsbQ" }, { "name":"DDW44_05770 anti-anti-sigma factor\tK04749 rsbV; anti-sigma B factor antagonist" }, { "name":"DDW44_16435 anti-sigma factor antagonist\tK04749 rsbV; anti-sigma B factor antagonist" }, { "name":"DDW44_03625 hypothetical protein\tK06204 dksA; RNA polymerase-binding transcription factor" }, { "name":"DDW44_12615 hypothetical protein\tK06204 dksA; RNA polymerase-binding transcription factor" }, { "name":"DDW44_19195 transcription elongation factor GreA\tK03624 greA; transcription elongation factor GreA" }, { "name":"DDW44_20970 transcription termination factor Rho\tK03628 rho; transcription termination factor Rho" } ] }, { "name":"03019 Messenger RNA biogenesis [BR:stir03019]", "children":[ { "name":"DDW44_08315 ribonuclease E\/G\tK08300 rne; ribonuclease E [EC:3.1.26.12]" }, { "name":"DDW44_22105 ribonuclease III\tK03685 rnc; ribonuclease III [EC:3.1.26.3]" }, { "name":"DDW44_22960 RNase J family beta-CASP ribonuclease\tK12574 rnj; ribonuclease J [EC:3.1.-.-]" }, { "name":"DDW44_11325 ribonuclease N1\tK01167 rnaSA; ribonuclease T1 [EC:4.6.1.24]" }, { "name":"DDW44_09045 oligoribonuclease\tK13288 orn; oligoribonuclease [EC:3.1.-.-]" }, { "name":"DDW44_23325 recombinase RecQ\tK03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]" }, { "name":"DDW44_11870 phosphopyruvate hydratase\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" }, { "name":"DDW44_22920 polyribonucleotide nucleotidyltransferase\tK00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]" }, { "name":"DDW44_20970 transcription termination factor Rho\tK03628 rho; transcription termination factor Rho" }, { "name":"DDW44_05325 molecular chaperone DnaK\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"DDW44_28075 hypothetical protein\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"DDW44_13765 groL; chaperonin GroEL\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"DDW44_18285 groL; chaperonin GroEL\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"DDW44_06595 RNA degradosome polyphosphate kinase\tK00937 ppk1; polyphosphate kinase [EC:2.7.4.1]" }, { "name":"DDW44_29155 ppk2; polyphosphate kinase 2\tK22468 ppk2; polyphosphate kinase [EC:2.7.4.34]" }, { "name":"DDW44_02965 RNase adapter RapZ\tK06958 rapZ; RNase adapter protein RapZ" }, { "name":"DDW44_02185 RNA helicase\tK03727 helY; ATP-dependent RNA helicase HelY [EC:5.6.2.6]" }, { "name":"DDW44_14125 ATP-dependent RNA helicase HrpA\tK03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]" } ] }, { "name":"03041 Spliceosome" }, { "name":"03011 Ribosome [BR:stir03011]", "children":[ { "name":"DDW44_03145 30S ribosomal protein S1\tK02945 RP-S1; small subunit ribosomal protein S1" }, { "name":"DDW44_22275 rpsB; 30S ribosomal protein S2\tK02967 RP-S2; small subunit ribosomal protein S2" }, { "name":"DDW44_18025 30S ribosomal protein S3\tK02982 RP-S3; small subunit ribosomal protein S3" }, { "name":"DDW44_11510 30S ribosomal protein S4\tK02986 RP-S4; small subunit ribosomal protein S4" }, { "name":"DDW44_18085 30S ribosomal protein S5\tK02988 RP-S5; small subunit ribosomal protein S5" }, { "name":"DDW44_14945 30S ribosomal protein S6\tK02990 RP-S6; small subunit ribosomal protein S6" }, { "name":"DDW44_17965 30S ribosomal protein S7\tK02992 RP-S7; small subunit ribosomal protein S7" }, { "name":"DDW44_18070 30S ribosomal protein S8\tK02994 RP-S8; small subunit ribosomal protein S8" }, { "name":"DDW44_18165 30S ribosomal protein S9\tK02996 RP-S9; small subunit ribosomal protein S9" }, { "name":"DDW44_17990 30S ribosomal protein S10\tK02946 RP-S10; small subunit ribosomal protein S10" }, { "name":"DDW44_18130 30S ribosomal protein S11\tK02948 RP-S11; small subunit ribosomal protein S11" }, { "name":"DDW44_17960 30S ribosomal protein S12\tK02950 RP-S12; small subunit ribosomal protein S12" }, { "name":"DDW44_18125 30S ribosomal protein S13\tK02952 RP-S13; small subunit ribosomal protein S13" }, { "name":"DDW44_16670 30S ribosomal protein S14\tK02954 RP-S14; small subunit ribosomal protein S14" }, { "name":"DDW44_18060 type Z 30S ribosomal protein S14\tK02954 RP-S14; small subunit ribosomal protein S14" }, { "name":"DDW44_28000 30S ribosomal protein S14\tK02954 RP-S14; small subunit ribosomal protein S14" }, { "name":"DDW44_22915 30S ribosomal protein S15\tK02956 RP-S15; small subunit ribosomal protein S15" }, { "name":"DDW44_22190 30S ribosomal protein S16\tK02959 RP-S16; small subunit ribosomal protein S16" }, { "name":"DDW44_18040 30S ribosomal protein S17\tK02961 RP-S17; small subunit ribosomal protein S17" }, { "name":"DDW44_14935 rpsR; 30S ribosomal protein S18\tK02963 RP-S18; small subunit ribosomal protein S18" }, { "name":"DDW44_16690 rpsR; 30S ribosomal protein S18\tK02963 RP-S18; small subunit ribosomal protein S18" }, { "name":"DDW44_18015 30S ribosomal protein S19\tK02965 RP-S19; small subunit ribosomal protein S19" }, { "name":"DDW44_08105 30S ribosomal protein S20\tK02968 RP-S20; small subunit ribosomal protein S20" }, { "name":"DDW44_17920 50S ribosomal protein L1\tK02863 RP-L1; large subunit ribosomal protein L1" }, { "name":"DDW44_18010 50S ribosomal protein L2\tK02886 RP-L2; large subunit ribosomal protein L2" }, { "name":"DDW44_17995 50S ribosomal protein L3\tK02906 RP-L3; large subunit ribosomal protein L3" }, { "name":"DDW44_18000 50S ribosomal protein L4\tK02926 RP-L4; large subunit ribosomal protein L4" }, { "name":"DDW44_18055 50S ribosomal protein L5\tK02931 RP-L5; large subunit ribosomal protein L5" }, { "name":"DDW44_18075 50S ribosomal protein L6\tK02933 RP-L6; large subunit ribosomal protein L6" }, { "name":"DDW44_14930 50S ribosomal protein L9\tK02939 RP-L9; large subunit ribosomal protein L9" }, { "name":"DDW44_17930 50S ribosomal protein L10\tK02864 RP-L10; large subunit ribosomal protein L10" }, { "name":"DDW44_17915 rplK; 50S ribosomal protein L11\tK02867 RP-L11; large subunit ribosomal protein L11" }, { "name":"DDW44_17935 50S ribosomal protein L7\/L12\tK02935 RP-L7; large subunit ribosomal protein L7\/L12" }, { "name":"DDW44_18160 50S ribosomal protein L13\tK02871 RP-L13; large subunit ribosomal protein L13" }, { "name":"DDW44_18045 50S ribosomal protein L14\tK02874 RP-L14; large subunit ribosomal protein L14" }, { "name":"DDW44_18095 50S ribosomal protein L15\tK02876 RP-L15; large subunit ribosomal protein L15" }, { "name":"DDW44_18030 50S ribosomal protein L16\tK02878 RP-L16; large subunit ribosomal protein L16" }, { "name":"DDW44_18140 50S ribosomal protein L17\tK02879 RP-L17; large subunit ribosomal protein L17" }, { "name":"DDW44_18080 50S ribosomal protein L18\tK02881 RP-L18; large subunit ribosomal protein L18" }, { "name":"DDW44_22210 50S ribosomal protein L19\tK02884 RP-L19; large subunit ribosomal protein L19" }, { "name":"DDW44_02060 50S ribosomal protein L20\tK02887 RP-L20; large subunit ribosomal protein L20" }, { "name":"DDW44_08260 rplU; 50S ribosomal protein L21\tK02888 RP-L21; large subunit ribosomal protein L21" }, { "name":"DDW44_18020 50S ribosomal protein L22\tK02890 RP-L22; large subunit ribosomal protein L22" }, { "name":"DDW44_18005 50S ribosomal protein L23\tK02892 RP-L23; large subunit ribosomal protein L23" }, { "name":"DDW44_18050 50S ribosomal protein L24\tK02895 RP-L24; large subunit ribosomal protein L24" }, { "name":"DDW44_08255 50S ribosomal protein L27\tK02899 RP-L27; large subunit ribosomal protein L27" }, { "name":"DDW44_22065 rpmB; 50S ribosomal protein L28\tK02902 RP-L28; large subunit ribosomal protein L28" }, { "name":"DDW44_27995 rpmB; 50S ribosomal protein L28\tK02902 RP-L28; large subunit ribosomal protein L28" }, { "name":"DDW44_18035 50S ribosomal protein L29\tK02904 RP-L29; large subunit ribosomal protein L29" }, { "name":"DDW44_18090 50S ribosomal protein L30\tK02907 RP-L30; large subunit ribosomal protein L30" }, { "name":"DDW44_16680 type B 50S ribosomal protein L31\tK02909 RP-L31; large subunit ribosomal protein L31" }, { "name":"DDW44_20985 rpmE; 50S ribosomal protein L31\tK02909 RP-L31; large subunit ribosomal protein L31" }, { "name":"DDW44_27990 hypothetical protein\tK02909 RP-L31; large subunit ribosomal protein L31" }, { "name":"DDW44_06225 rpmF; 50S ribosomal protein L32\tK02911 RP-L32; large subunit ribosomal protein L32" }, { "name":"DDW44_22100 50S ribosomal protein L32\tK02911 RP-L32; large subunit ribosomal protein L32" }, { "name":"DDW44_28010 rpmF; 50S ribosomal protein L32\tK02911 RP-L32; large subunit ribosomal protein L32" }, { "name":"DDW44_16675 rpmG; 50S ribosomal protein L33\tK02913 RP-L33; large subunit ribosomal protein L33" }, { "name":"DDW44_17865 rpmG; 50S ribosomal protein L33\tK02913 RP-L33; large subunit ribosomal protein L33" }, { "name":"DDW44_15070 50S ribosomal protein L34\tK02914 RP-L34; large subunit ribosomal protein L34" }, { "name":"DDW44_02065 rpmI; 50S ribosomal protein L35\tK02916 RP-L35; large subunit ribosomal protein L35" }, { "name":"DDW44_18120 50S ribosomal protein L36\tK02919 RP-L36; large subunit ribosomal protein L36" }, { "name":"DDW44_12065 50S ribosomal protein L25\tK02897 RP-L25; large subunit ribosomal protein L25" }, { "name":"DDW44_06710 16S ribosomal RNA\tK01977 16SrRNA; 16S ribosomal RNA" }, { "name":"DDW44_07370 16S ribosomal RNA\tK01977 16SrRNA; 16S ribosomal RNA" }, { "name":"DDW44_10135 16S ribosomal RNA\tK01977 16SrRNA; 16S ribosomal RNA" }, { "name":"DDW44_10945 16S ribosomal RNA\tK01977 16SrRNA; 16S ribosomal RNA" }, { "name":"DDW44_17090 16S ribosomal RNA\tK01977 16SrRNA; 16S ribosomal RNA" }, { "name":"DDW44_06705 23S ribosomal RNA\tK01980 23SrRNA; 23S ribosomal RNA" }, { "name":"DDW44_07365 23S ribosomal RNA\tK01980 23SrRNA; 23S ribosomal RNA" }, { "name":"DDW44_10130 23S ribosomal RNA\tK01980 23SrRNA; 23S ribosomal RNA" }, { "name":"DDW44_10940 23S ribosomal RNA\tK01980 23SrRNA; 23S ribosomal RNA" }, { "name":"DDW44_17095 23S ribosomal RNA\tK01980 23SrRNA; 23S ribosomal RNA" }, { "name":"DDW44_06700 rrf; 5S ribosomal RNA\tK01985 5SrRNA; 5S ribosomal RNA" }, { "name":"DDW44_07360 rrf; 5S ribosomal RNA\tK01985 5SrRNA; 5S ribosomal RNA" }, { "name":"DDW44_10125 rrf; 5S ribosomal RNA\tK01985 5SrRNA; 5S ribosomal RNA" }, { "name":"DDW44_10935 rrf; 5S ribosomal RNA\tK01985 5SrRNA; 5S ribosomal RNA" }, { "name":"DDW44_17100 rrf; 5S ribosomal RNA\tK01985 5SrRNA; 5S ribosomal RNA" }, { "name":"DDW44_22965 rrf; 5S ribosomal RNA\tK01985 5SrRNA; 5S ribosomal RNA" } ] }, { "name":"03009 Ribosome biogenesis [BR:stir03009]", "children":[ { "name":"DDW44_22105 ribonuclease III\tK03685 rnc; ribonuclease III [EC:3.1.26.3]" }, { "name":"DDW44_09045 oligoribonuclease\tK13288 orn; oligoribonuclease [EC:3.1.-.-]" }, { "name":"DDW44_07975 GTPase Era\tK03595 era; GTPase" }, { "name":"DDW44_08250 obgE; GTPase ObgE\tK03979 obgE; GTPase [EC:3.6.5.-]" }, { "name":"DDW44_03625 hypothetical protein\tK06204 dksA; RNA polymerase-binding transcription factor" }, { "name":"DDW44_12615 hypothetical protein\tK06204 dksA; RNA polymerase-binding transcription factor" }, { "name":"DDW44_22760 transcription termination\/antitermination protein NusA\tK02600 nusA; transcription termination\/antitermination protein NusA" }, { "name":"DDW44_11435 transcription antitermination factor NusB\tK03625 nusB; transcription antitermination protein NusB" }, { "name":"DDW44_17905 transcription termination\/antitermination protein NusG\tK02601 nusG; transcription termination\/antitermination protein NusG" }, { "name":"DDW44_12175 16S rRNA (adenine(1518)-N(6)\/adenine(1519)-N(6))-dimethyltransferase\tK02528 ksgA; 16S rRNA (adenine1518-N6\/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]" }, { "name":"DDW44_11340 rRNA cytosine-C5-methyltransferase\tK03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]" }, { "name":"DDW44_22080 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD\tK08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]" }, { "name":"DDW44_08050 16S rRNA (uracil(1498)-N(3))-methyltransferase\tK09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]" }, { "name":"DDW44_15045 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG\tK03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]" }, { "name":"DDW44_03725 16S rRNA (cytosine(1402)-N(4))-methyltransferase\tK03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]" }, { "name":"DDW44_12195 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase\tK07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]" }, { "name":"DDW44_07310 16S\/23S rRNA (cytidine-2'-O)-methyltransferase\tK06442 tlyA; 23S rRNA (cytidine1920-2'-O)\/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]" }, { "name":"DDW44_14065 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB\tK03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]" }, { "name":"DDW44_05025 50S rRNA methyltransferase\tK11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]" }, { "name":"DDW44_22315 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN\tK06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]" }, { "name":"DDW44_02435 pseudouridylate synthase\tK06177 rluA; tRNA pseudouridine32 synthase \/ 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]" }, { "name":"DDW44_07235 pseudouridine synthase\tK06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]" }, { "name":"DDW44_03615 RluA family pseudouridine synthase\tK06180 rluD; 23S rRNA pseudouridine1911\/1915\/1917 synthase [EC:5.4.99.23]" }, { "name":"DDW44_18255 rimI; ribosomal-protein-alanine N-acetyltransferase\tK03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase \/ [ribosomal protein L31]-L-lysine N-acetyltransferase [EC:2.3.1.266 2.3.1.338]" }, { "name":"DDW44_12405 N-acetyltransferase\tK03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]" }, { "name":"DDW44_26445 N-acetyltransferase\tK03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]" }, { "name":"DDW44_21605 RimJ\/RimL family protein N-acetyltransferase\tK03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]" }, { "name":"DDW44_22200 ribosome maturation factor RimM\tK02860 rimM; 16S rRNA processing protein RimM" }, { "name":"DDW44_23000 rimO; 30S ribosomal protein S12 methylthiotransferase RimO\tK14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]" }, { "name":"DDW44_09940 hypothetical protein\tK09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor" }, { "name":"DDW44_28635 bacteriocin biosynthesis protein SagD\tK09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor" }, { "name":"DDW44_28675 cyclodehydratase\tK09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor" }, { "name":"DDW44_08315 ribonuclease E\/G\tK08300 rne; ribonuclease E [EC:3.1.26.12]" }, { "name":"DDW44_11490 Holliday junction resolvase RuvX\tK07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]" }, { "name":"DDW44_20375 rsgA; ribosome small subunit-dependent GTPase A\tK06949 rsgA; ribosome biogenesis GTPase \/ thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]" }, { "name":"DDW44_24875 rsgA; ribosome small subunit-dependent GTPase A\tK06949 rsgA; ribosome biogenesis GTPase \/ thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]" }, { "name":"DDW44_07120 ribosome biogenesis GTPase Der\tK03977 engA; GTPase" }, { "name":"DDW44_23235 hflX; GTPase HflX\tK03665 hflX; GTPase" }, { "name":"DDW44_21000 threonylcarbamoyl-AMP synthase\tK07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]" }, { "name":"DDW44_11550 GTP pyrophosphokinase\tK01139 spoT; GTP diphosphokinase \/ guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]" }, { "name":"DDW44_22780 30S ribosome-binding factor RbfA\tK02834 rbfA; ribosome-binding factor A" }, { "name":"DDW44_22755 ribosome maturation factor RimP\tK09748 rimP; ribosome maturation factor RimP" }, { "name":"DDW44_08190 rsfS; ribosome silencing factor\tK09710 ybeB; ribosome-associated protein" }, { "name":"DDW44_08005 rRNA maturation RNase YbeY\tK07042 ybeY; probable rRNA maturation factor" }, { "name":"DDW44_19675 redox-regulated ATPase YchF\tK06942 ychF; ribosome-binding ATPase" }, { "name":"DDW44_22095 DUF177 domain-containing protein\tK07040 yceD; DUF177 domain-containing protein" } ] }, { "name":"03016 Transfer RNA biogenesis [BR:stir03016]", "children":[ { "name":"DDW44_08035 ribonuclease Z\tK00784 rnz; ribonuclease Z [EC:3.1.26.11]" }, { "name":"DDW44_11325 ribonuclease N1\tK01167 rnaSA; ribonuclease T1 [EC:4.6.1.24]" }, { "name":"DDW44_14990 CCA tRNA nucleotidyltransferase\tK00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]" }, { "name":"DDW44_17220 RNA-splicing ligase RtcB\tK14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate\/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]" }, { "name":"DDW44_21950 glutamate--tRNA ligase\tK01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]" }, { "name":"DDW44_22735 proline--tRNA ligase\tK01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]" }, { "name":"DDW44_03635 isoleucine--tRNA ligase\tK01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]" }, { "name":"DDW44_08150 leucine--tRNA ligase\tK01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]" }, { "name":"DDW44_04625 methionine--tRNA ligase\tK01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]" }, { "name":"DDW44_04885 methionine--tRNA ligase\tK01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]" }, { "name":"DDW44_17195 arginine--tRNA ligase\tK01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]" }, { "name":"DDW44_20945 hypothetical protein\tK01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]" }, { "name":"DDW44_16810 hypothetical protein\tK04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]" }, { "name":"DDW44_28365 lysS; bifunctional lysylphosphatidylglycerol synthetase\/lysine--tRNA ligase LysX\tK04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]" }, { "name":"DDW44_15635 aspartate--tRNA ligase\tK01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]" }, { "name":"DDW44_11495 alanine--tRNA ligase\tK01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]" }, { "name":"DDW44_07905 glycine--tRNA ligase\tK01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]" }, { "name":"DDW44_11645 threonine--tRNA ligase\tK01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]" }, { "name":"DDW44_14725 serine--tRNA ligase\tK01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]" }, { "name":"DDW44_14070 cysteine--tRNA ligase\tK01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]" }, { "name":"DDW44_08375 valine--tRNA ligase\tK01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]" }, { "name":"DDW44_11530 histidine--tRNA ligase\tK01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]" }, { "name":"DDW44_02045 phenylalanine--tRNA ligase subunit alpha\tK01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]" }, { "name":"DDW44_02040 phenylalanine--tRNA ligase subunit beta\tK01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]" }, { "name":"DDW44_07540 tyrosine--tRNA ligase\tK01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]" }, { "name":"DDW44_17080 trpS; tryptophan--tRNA ligase\tK01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]" }, { "name":"DDW44_18630 trpS; tryptophan--tRNA ligase\tK01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]" }, { "name":"DDW44_06480 D-tyrosyl-tRNA(Tyr) deacylase\tK07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]" }, { "name":"DDW44_08040 histidine triad nucleotide-binding protein\tK02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]" }, { "name":"DDW44_23185 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB\tK06168 CDK5RAP1; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]" }, { "name":"DDW44_02280 transposase\tK07442 TRM61; tRNA (adenine57-N1\/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]" }, { "name":"DDW44_06775 tRNA (guanosine(46)-N7)-methyltransferase TrmB\tK03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]" }, { "name":"DDW44_18145 tRNA pseudouridine(38-40) synthase TruA\tK06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]" }, { "name":"DDW44_22785 tRNA pseudouridine(55) synthase TruB\tK03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]" }, { "name":"DDW44_04085 cysteine desulfurase\tK04487 iscS; cysteine desulfurase [EC:2.8.1.7]" }, { "name":"DDW44_21525 cysteine desulfurase\tK04487 iscS; cysteine desulfurase [EC:2.8.1.7]" }, { "name":"DDW44_21000 threonylcarbamoyl-AMP synthase\tK07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]" }, { "name":"DDW44_23205 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA\tK00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]" }, { "name":"DDW44_15065 rnpA; ribonuclease P protein component\tK03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]" }, { "name":"DDW44_04680 rnpB; RNase P RNA component class A\tK01978 rnpB; RNase P catalytic RNA component" }, { "name":"DDW44_09520 ribonuclease PH\tK00989 rph; ribonuclease PH [EC:2.7.7.56]" }, { "name":"DDW44_24440 ribonuclease D\tK03684 rnd; ribonuclease D [EC:3.1.13.5]" }, { "name":"DDW44_13550 thpR; RNA 2',3'-cyclic phosphodiesterase\tK01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]" }, { "name":"DDW44_14780 RNA 2'-phosphotransferase\tK07559 kptA; putative RNA 2'-phosphotransferase [EC:2.7.1.-]" }, { "name":"DDW44_08635 energy-dependent translational throttle protein EttA\tK06020 ettA; energy-dependent translational throttle protein EttA" }, { "name":"DDW44_17200 lysine--tRNA ligase\tK04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]" }, { "name":"DDW44_03540 ybaK; Cys-tRNA(Pro) deacylase\tK03976 ybaK; Cys-tRNA(Pro)\/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]" }, { "name":"DDW44_14435 hypothetical protein\tK11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]" }, { "name":"DDW44_22205 tRNA (guanosine(37)-N1)-methyltransferase TrmD\tK00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]" }, { "name":"DDW44_02055 RNA methyltransferase\tK03437 spoU; RNA methyltransferase, TrmH family" }, { "name":"DDW44_02435 pseudouridylate synthase\tK06177 rluA; tRNA pseudouridine32 synthase \/ 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]" }, { "name":"DDW44_21535 tRNA 2-thiouridine(34) synthase MnmA\tK00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]" }, { "name":"DDW44_06485 folate-binding protein YgfZ\tK06980 ygfZ; tRNA-modifying protein YgfZ" }, { "name":"DDW44_07445 queuosine biosynthesis protein\tK07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]" }, { "name":"DDW44_16765 tilS; tRNA lysidine(34) synthetase TilS\tK04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]" }, { "name":"DDW44_18250 tsaB; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB\tK14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB" }, { "name":"DDW44_18260 tsaD; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD\tK25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]" }, { "name":"DDW44_18235 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE\tK06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE" }, { "name":"DDW44_22920 polyribonucleotide nucleotidyltransferase\tK00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]" } ] }, { "name":"03012 Translation factors [BR:stir03012]", "children":[ { "name":"DDW44_22770 translation initiation factor IF-2\tK02519 infB; translation initiation factor IF-2" }, { "name":"DDW44_02070 translation initiation factor IF-3\tK02520 infC; translation initiation factor IF-3" }, { "name":"DDW44_22280 elongation factor Ts\tK02357 tsf; elongation factor Ts" }, { "name":"DDW44_10705 tuf; elongation factor Tu\tK02358 tuf; elongation factor Tu" }, { "name":"DDW44_17975 tuf; elongation factor Tu\tK02358 tuf; elongation factor Tu" }, { "name":"DDW44_11625 elongation factor G-like protein EF-G2\tK02355 fusA; elongation factor G" }, { "name":"DDW44_17970 fusA; elongation factor G\tK02355 fusA; elongation factor G" }, { "name":"DDW44_20990 peptide chain release factor 1\tK02835 prfA; peptide chain release factor 1" }, { "name":"DDW44_22290 ribosome recycling factor\tK02838 frr; ribosome recycling factor" }, { "name":"DDW44_13730 putative protein N(5)-glutamine methyltransferase\tK02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]" }, { "name":"DDW44_15195 methyltransferase domain-containing protein\tK02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]" }, { "name":"DDW44_20995 prmC; peptide chain release factor N(5)-glutamine methyltransferase\tK02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]" }, { "name":"DDW44_30170 methyltransferase\tK02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]" }, { "name":"DDW44_12070 aminoacyl-tRNA hydrolase\tK01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]" }, { "name":"DDW44_18115 translation initiation factor IF-1\tK02518 infA; translation initiation factor IF-1" }, { "name":"DDW44_11440 efp; elongation factor P\tK02356 efp; elongation factor P" }, { "name":"DDW44_09950 peptide chain release factor 2\tK02836 prfB; peptide chain release factor 2" }, { "name":"DDW44_13845 aminoacyl-tRNA hydrolase\tK15034 yaeJ; ribosome-associated protein" } ] }, { "name":"03110 Chaperones and folding catalysts [BR:stir03110]", "children":[ { "name":"DDW44_05360 clpB; ATP-dependent chaperone ClpB\tK03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB" }, { "name":"DDW44_16945 NDP-hexose 4-ketoreductase\tK03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC" }, { "name":"DDW44_08385 ATP-dependent Clp protease ATP-binding subunit ClpX\tK03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX" }, { "name":"DDW44_05325 molecular chaperone DnaK\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"DDW44_28075 hypothetical protein\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"DDW44_13765 groL; chaperonin GroEL\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"DDW44_18285 groL; chaperonin GroEL\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"DDW44_05335 molecular chaperone DnaJ\tK03686 dnaJ; molecular chaperone DnaJ" }, { "name":"DDW44_08060 molecular chaperone DnaJ\tK03686 dnaJ; molecular chaperone DnaJ" }, { "name":"DDW44_05330 nucleotide exchange factor GrpE\tK03687 GRPE; molecular chaperone GrpE" }, { "name":"DDW44_00735 Hsp20\/alpha crystallin family protein\tK13993 HSP20; HSP20 family protein" }, { "name":"DDW44_29490 Hsp20\/alpha crystallin family protein\tK13993 HSP20; HSP20 family protein" }, { "name":"DDW44_04910 RNA-binding protein\tK04762 hslR; ribosome-associated heat shock protein Hsp15" }, { "name":"DDW44_09460 co-chaperone GroES\tK04078 groES; chaperonin GroES" }, { "name":"DDW44_18280 co-chaperone GroES\tK04078 groES; chaperonin GroES" }, { "name":"DDW44_16775 cell division protein FtsH\tK03798 ftsH; cell division protease FtsH [EC:3.4.24.-]" }, { "name":"DDW44_22175 ATP-dependent metallopeptidase FtsH\/Yme1\/Tma family protein\tK03798 ftsH; cell division protease FtsH [EC:3.4.24.-]" }, { "name":"DDW44_21030 atpB; ATP synthase F0 subunit A\tK02108 ATPF0A; F-type H+-transporting ATPase subunit a" }, { "name":"DDW44_14700 copper resistance protein CopZ\tK09796 pccA; periplasmic copper chaperone A" }, { "name":"DDW44_00970 hypA; hydrogenase maturation nickel metallochaperone HypA\tK04651 hypA; hydrogenase nickel incorporation protein HypA\/HybF" }, { "name":"DDW44_00965 hypB; hydrogenase accessory protein HypB\tK04652 hypB; hydrogenase nickel incorporation protein HypB" }, { "name":"DDW44_06165 peptidase S8\tK01342 aprE; subtilisin [EC:3.4.21.62]" }, { "name":"DDW44_27615 protease\tK14645 K14645; serine protease [EC:3.4.21.-]" }, { "name":"DDW44_22850 mycP; type VII secretion-associated serine protease mycosin\tK14743 mycP; membrane-anchored mycosin MYCP [EC:3.4.21.-]" }, { "name":"DDW44_18750 beta-N-acetylglucosaminidase\tK12373 HEXA_B; hexosaminidase [EC:3.2.1.52]" }, { "name":"DDW44_15255 peptidylprolyl isomerase\tK03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]" }, { "name":"DDW44_11540 peptidylprolyl isomerase\tK03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]" }, { "name":"DDW44_15025 trxA; thioredoxin\tK03671 TXN; thioredoxin" }, { "name":"DDW44_28505 trxA; thioredoxin\tK03671 TXN; thioredoxin" }, { "name":"DDW44_21250 co-chaperone YbbN\tK05838 ybbN; putative thioredoxin" } ] }, { "name":"04131 Membrane trafficking [BR:stir04131]", "children":[ { "name":"DDW44_08360 nucleoside-diphosphate kinase\tK00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]" }, { "name":"DDW44_25635 flotillin\tK07192 FLOT; flotillin" }, { "name":"DDW44_05685 UPF0016 domain-containing protein\tK23541 TMEM165; Ca2+\/H+ antiporter, TMEM165\/GDT1 family" }, { "name":"DDW44_03960 hypothetical protein\tK01551 arsA; arsenite\/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]" }, { "name":"DDW44_01195 alpha-mannosidase\tK01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24]" }, { "name":"DDW44_26930 alpha-mannosidase\tK01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24]" }, { "name":"DDW44_02945 gap; type I glyceraldehyde-3-phosphate dehydrogenase\tK00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]" }, { "name":"DDW44_29170 glyceraldehyde-3-phosphate dehydrogenase\tK00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]" }, { "name":"DDW44_06385 phosphoglyceromutase\tK01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]" }, { "name":"DDW44_03250 pyk; pyruvate kinase\tK00873 PK; pyruvate kinase [EC:2.7.1.40]" }, { "name":"DDW44_21275 pyk; pyruvate kinase\tK00873 PK; pyruvate kinase [EC:2.7.1.40]" }, { "name":"DDW44_11135 MFS transporter\tK06902 UMF1; MFS transporter, UMF1 family" } ] }, { "name":"04121 Ubiquitin system [BR:stir04121]", "children":[ { "name":"DDW44_02255 ubiquitin-like protein Pup\tK13570 pup; prokaryotic ubiquitin-like protein Pup" } ] }, { "name":"03051 Proteasome [BR:stir03051]", "children":[ { "name":"DDW44_02245 prcA; proteasome subunit alpha\tK03432 psmA; proteasome alpha subunit [EC:3.4.25.1]" }, { "name":"DDW44_02250 prcB; proteasome subunit beta\tK03433 psmB; proteasome beta subunit [EC:3.4.25.1]" }, { "name":"DDW44_02265 arc; proteasome ATPase\tK13527 mpa; proteasome-associated ATPase" }, { "name":"DDW44_02230 pafA; Pup--protein ligase\tK13571 pafA; proteasome accessory factor A [EC:6.3.1.19]" }, { "name":"DDW44_02215 WYL domain-containing protein\tK13572 pafB; proteasome accessory factor B" }, { "name":"DDW44_02210 WYL domain-containing protein\tK13573 pafC; proteasome accessory factor C" }, { "name":"DDW44_02260 proteasome accessory factor PafA2\tK20814 dop; Pup amidohydrolase [EC:3.5.1.119]" } ] }, { "name":"03032 DNA replication proteins [BR:stir03032]", "children":[ { "name":"DDW44_09765 DNA-binding protein HU 1\tK03530 hupB; DNA-binding protein HU-beta" }, { "name":"DDW44_22015 DNA-binding protein\tK03530 hupB; DNA-binding protein HU-beta" }, { "name":"DDW44_15080 chromosomal replication initiator protein DnaA\tK02313 dnaA; chromosomal replication initiator protein" }, { "name":"DDW44_14920 dnaB; replicative DNA helicase\tK02314 dnaB; replicative DNA helicase [EC:5.6.2.3]" }, { "name":"DDW44_30625 hypothetical protein\tK02315 dnaC; DNA replication protein DnaC" }, { "name":"DDW44_07750 DNA primase\tK02316 dnaG; DNA primase [EC:2.7.7.101]" }, { "name":"DDW44_14940 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"DDW44_03565 DNA polymerase III subunit alpha\tK02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]" }, { "name":"DDW44_15090 DNA polymerase III subunit beta\tK02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]" }, { "name":"DDW44_08110 holA; DNA polymerase III subunit delta\tK02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]" }, { "name":"DDW44_16475 DNA polymerase III subunit delta'\tK02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]" }, { "name":"DDW44_07610 DEDDh family exonuclease\tK02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]" }, { "name":"DDW44_11660 3'-5' exonuclease\tK02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]" }, { "name":"DDW44_24710 DNA polymerase III subunit epsilon\tK02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]" }, { "name":"DDW44_04700 bifunctional RNase H\/acid phosphatase\tK22316 rhnA-cobC; ribonuclease H \/ adenosylcobalamin\/alpha-ribazole phosphatase [EC:3.1.26.4 3.1.3.73]" }, { "name":"DDW44_23310 ribonuclease HII\tK03470 rnhB; ribonuclease HII [EC:3.1.26.4]" }, { "name":"DDW44_03180 DNA polymerase I\tK02335 polA; DNA polymerase I [EC:2.7.7.7]" }, { "name":"DDW44_21560 NAD-dependent DNA ligase LigA\tK01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]" }, { "name":"DDW44_15115 DNA gyrase subunit A\tK02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]" }, { "name":"DDW44_23390 DNA topoisomerase IV\tK02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]" }, { "name":"DDW44_15110 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B\tK02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]" }, { "name":"DDW44_23365 type IIA DNA topoisomerase subunit B\tK02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]" }, { "name":"DDW44_16465 topA; type I DNA topoisomerase\tK03168 topA; DNA topoisomerase I [EC:5.6.2.1]" } ] }, { "name":"03036 Chromosome and associated proteins [BR:stir03036]", "children":[ { "name":"DDW44_22105 ribonuclease III\tK03685 rnc; ribonuclease III [EC:3.1.26.3]" }, { "name":"DDW44_25635 flotillin\tK07192 FLOT; flotillin" }, { "name":"DDW44_14205 Lsr2 family protein\tK26249 lsr2; nucleoid-associated protein Lsr2" }, { "name":"DDW44_16930 Lsr2 family protein\tK26249 lsr2; nucleoid-associated protein Lsr2" }, { "name":"DDW44_09765 DNA-binding protein HU 1\tK03530 hupB; DNA-binding protein HU-beta" }, { "name":"DDW44_22015 DNA-binding protein\tK03530 hupB; DNA-binding protein HU-beta" }, { "name":"DDW44_15080 chromosomal replication initiator protein DnaA\tK02313 dnaA; chromosomal replication initiator protein" }, { "name":"DDW44_23020 DNA starvation\/stationary phase protection protein\tK04047 dps; starvation-inducible DNA-binding protein" }, { "name":"DDW44_10615 Lrp\/AsnC family transcriptional regulator\tK03719 lrp; Lrp\/AsnC family transcriptional regulator, leucine-responsive regulatory protein" }, { "name":"DDW44_11160 Lrp\/AsnC family transcriptional regulator\tK03719 lrp; Lrp\/AsnC family transcriptional regulator, leucine-responsive regulatory protein" }, { "name":"DDW44_17365 Lrp\/AsnC family transcriptional regulator\tK03719 lrp; Lrp\/AsnC family transcriptional regulator, leucine-responsive regulatory protein" }, { "name":"DDW44_22130 chromosome segregation protein SMC\tK03529 smc; chromosome segregation protein" }, { "name":"DDW44_07245 segregation\/condensation protein A\tK05896 scpA; segregation and condensation protein A" }, { "name":"DDW44_07240 scpB; SMC-Scp complex subunit ScpB\tK06024 scpB; segregation and condensation protein B" }, { "name":"DDW44_09865 ftsE; cell division ATP-binding protein FtsE\tK09812 ftsE; cell division transport system ATP-binding protein" }, { "name":"DDW44_03710 cell division protein\tK03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]" }, { "name":"DDW44_05885 cell division protein FtsK\tK03466 ftsK; DNA segregation ATPase FtsK\/SpoIIIE, S-DNA-T family" }, { "name":"DDW44_16125 conjugal transfer protein TraS\tK03466 ftsK; DNA segregation ATPase FtsK\/SpoIIIE, S-DNA-T family" }, { "name":"DDW44_16205 cell division protein FtsK\tK03466 ftsK; DNA segregation ATPase FtsK\/SpoIIIE, S-DNA-T family" }, { "name":"DDW44_22990 cell division protein FtsK\tK03466 ftsK; DNA segregation ATPase FtsK\/SpoIIIE, S-DNA-T family" }, { "name":"DDW44_30925 hypothetical protein\tK03466 ftsK; DNA segregation ATPase FtsK\/SpoIIIE, S-DNA-T family" }, { "name":"DDW44_03675 cell division protein FtsQ\tK03589 ftsQ; cell division protein FtsQ" }, { "name":"DDW44_03685 ftsW; putative lipid II flippase FtsW\tK03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"DDW44_15305 cell division protein FtsW\tK03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"DDW44_20795 cell division protein FtsW\tK03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"DDW44_09860 ABC transporter permease\tK09811 ftsX; cell division transport system permease protein" }, { "name":"DDW44_03665 cell division protein FtsZ\tK03531 ftsZ; cell division protein FtsZ" }, { "name":"DDW44_24525 cell division protein ZapE\tK06916 zapE; cell division protein ZapE" }, { "name":"DDW44_04775 N-acetylmuramoyl-L-alanine amidase\tK01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]" }, { "name":"DDW44_03650 cell division protein SepF\tK09772 sepF; cell division inhibitor SepF" }, { "name":"DDW44_07070 cell division protein SepF\tK09772 sepF; cell division inhibitor SepF" }, { "name":"DDW44_06140 rod shape-determining protein\tK03569 mreB; rod shape-determining protein MreB and related proteins" }, { "name":"DDW44_08355 rod shape-determining protein\tK03569 mreB; rod shape-determining protein MreB and related proteins" }, { "name":"DDW44_12610 hypothetical protein\tK03569 mreB; rod shape-determining protein MreB and related proteins" }, { "name":"DDW44_08350 rod shape-determining protein MreC\tK03570 mreC; rod shape-determining protein MreC" }, { "name":"DDW44_08335 rod shape-determining protein RodA\tK05837 rodA; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"DDW44_07255 chromosome partitioning protein\tK03496 parA; chromosome partitioning protein" }, { "name":"DDW44_15040 cobyrinic acid a,c-diamide synthase\tK03496 parA; chromosome partitioning protein" }, { "name":"DDW44_31545 phosphopantetheine--protein transferase\tK03496 parA; chromosome partitioning protein" }, { "name":"DDW44_15035 chromosome partitioning protein ParB\tK03497 parB; ParB family transcriptional regulator, chromosome partitioning protein" }, { "name":"DDW44_30700 hypothetical protein\tK03497 parB; ParB family transcriptional regulator, chromosome partitioning protein" }, { "name":"DDW44_31540 chromosome partitioning protein ParB\tK03497 parB; ParB family transcriptional regulator, chromosome partitioning protein" }, { "name":"DDW44_15045 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG\tK03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]" }, { "name":"DDW44_20035 MRP family ATP-binding protein\tK03593 mrp; ATP-binding protein involved in chromosome partitioning" }, { "name":"DDW44_02955 whiA; DNA-binding protein WhiA\tK09762 whiA; cell division protein WhiA" } ] }, { "name":"03400 DNA repair and recombination proteins [BR:stir03400]", "children":[ { "name":"DDW44_17665 methylated-DNA--[protein]-cysteine S-methyltransferase\tK00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]" }, { "name":"DDW44_26275 cysteine methyltransferase\tK00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]" }, { "name":"DDW44_25145 deoxyribodipyrimidine photolyase\tK01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]" }, { "name":"DDW44_01510 uracil-DNA glycosylase\tK03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]" }, { "name":"DDW44_10770 uracil-DNA glycosylase\tK03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]" }, { "name":"DDW44_07375 DNA-3-methyladenine glycosylase\tK03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]" }, { "name":"DDW44_16985 adenine glycosylase\tK03575 mutY; A\/G-specific adenine glycosylase [EC:3.2.2.31]" }, { "name":"DDW44_16330 nth; endonuclease III\tK10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]" }, { "name":"DDW44_13645 helicase\tK10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]" }, { "name":"DDW44_00590 NUDIX domain-containing protein\tK03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]" }, { "name":"DDW44_06605 DNA mismatch repair protein MutT\tK03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]" }, { "name":"DDW44_09700 DNA mismatch repair protein MutT\tK03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]" }, { "name":"DDW44_19800 NUDIX domain-containing protein\tK03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]" }, { "name":"DDW44_23620 dUTP diphosphatase\tK01520 dut; dUTP diphosphatase [EC:3.6.1.23]" }, { "name":"DDW44_25155 cryptochrome\/photolyase family protein\tK06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]" }, { "name":"DDW44_17660 alpha-ketoglutarate-dependent dioxygenase AlkB\tK03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]" }, { "name":"DDW44_10540 G\/U mismatch-specific DNA glycosylase\tK03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]" }, { "name":"DDW44_29465 uracil-DNA glycosylase\tK21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]" }, { "name":"DDW44_26270 DNA-3-methyladenine glycosylase\tK13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response \/ DNA-3-methyladenine glycosylase II [EC:3.2.2.21]" }, { "name":"DDW44_19990 DNA-3-methyladenine glycosylase I\tK01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]" }, { "name":"DDW44_22110 DNA-formamidopyrimidine glycosylase\tK10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]" }, { "name":"DDW44_28310 endonuclease VIII\tK10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]" }, { "name":"DDW44_08440 DNA glycosylase\tK05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]" }, { "name":"DDW44_23030 DNA glycosylase\tK05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]" }, { "name":"DDW44_12345 xth; exodeoxyribonuclease III\tK01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]" }, { "name":"DDW44_26125 xth; exodeoxyribonuclease III\tK01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]" }, { "name":"DDW44_03875 deoxyribonuclease IV\tK01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]" }, { "name":"DDW44_27050 endonuclease V\tK05982 nfi; deoxyribonuclease V [EC:3.1.21.7]" }, { "name":"DDW44_21560 NAD-dependent DNA ligase LigA\tK01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]" }, { "name":"DDW44_03180 DNA polymerase I\tK02335 polA; DNA polymerase I [EC:2.7.7.7]" }, { "name":"DDW44_02995 excinuclease ABC subunit A\tK03701 uvrA; excinuclease ABC subunit A" }, { "name":"DDW44_21720 ABC transporter\tK03701 uvrA; excinuclease ABC subunit A" }, { "name":"DDW44_03030 excinuclease ABC subunit B\tK03702 uvrB; excinuclease ABC subunit B" }, { "name":"DDW44_02970 excinuclease ABC subunit UvrC\tK03703 uvrC; excinuclease ABC subunit C" }, { "name":"DDW44_18440 pcrA; DNA helicase PcrA\tK03657 uvrD; ATP-dependent DNA helicase UvrD\/PcrA [EC:5.6.2.4]" }, { "name":"DDW44_20200 ATP-dependent DNA helicase\tK03657 uvrD; ATP-dependent DNA helicase UvrD\/PcrA [EC:5.6.2.4]" }, { "name":"DDW44_20220 ATP-dependent DNA helicase\tK03657 uvrD; ATP-dependent DNA helicase UvrD\/PcrA [EC:5.6.2.4]" }, { "name":"DDW44_17945 rpoB; DNA-directed RNA polymerase subunit beta\tK03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]" }, { "name":"DDW44_17950 DNA-directed RNA polymerase subunit beta'\tK03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]" }, { "name":"DDW44_18135 DNA-directed RNA polymerase subunit alpha\tK03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]" }, { "name":"DDW44_11375 DNA-directed RNA polymerase subunit omega\tK03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]" }, { "name":"DDW44_11970 mfd; transcription-repair coupling factor\tK03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]" }, { "name":"DDW44_19655 exodeoxyribonuclease VII large subunit\tK03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]" }, { "name":"DDW44_19650 exodeoxyribonuclease VII small subunit\tK03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]" }, { "name":"DDW44_03565 DNA polymerase III subunit alpha\tK02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]" }, { "name":"DDW44_15090 DNA polymerase III subunit beta\tK02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]" }, { "name":"DDW44_08110 holA; DNA polymerase III subunit delta\tK02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]" }, { "name":"DDW44_16475 DNA polymerase III subunit delta'\tK02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]" }, { "name":"DDW44_07610 DEDDh family exonuclease\tK02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]" }, { "name":"DDW44_11660 3'-5' exonuclease\tK02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]" }, { "name":"DDW44_24710 DNA polymerase III subunit epsilon\tK02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]" }, { "name":"DDW44_14940 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"DDW44_08800 ATP-dependent RecD-like DNA helicase\tK03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]" }, { "name":"DDW44_23070 recA; recombinase RecA\tK03553 recA; recombination protein RecA" }, { "name":"DDW44_11580 Holliday junction branch migration protein RuvA\tK03550 ruvA; holliday junction DNA helicase RuvA" }, { "name":"DDW44_11575 Holliday junction branch migration DNA helicase RuvB\tK03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]" }, { "name":"DDW44_11585 crossover junction endodeoxyribonuclease RuvC\tK01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]" }, { "name":"DDW44_11360 primosome assembly protein PriA\tK04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]" }, { "name":"DDW44_10620 exonuclease\tK03546 sbcC; DNA repair protein SbcC\/Rad50" }, { "name":"DDW44_10625 exonuclease SbcCD subunit D\tK03547 sbcD; DNA repair protein SbcD\/Mre11" }, { "name":"DDW44_17000 DNA repair protein RadA\tK04485 radA; DNA repair protein RadA\/Sms" }, { "name":"DDW44_15100 DNA replication\/repair protein RecF\tK03629 recF; DNA replication and repair protein RecF" }, { "name":"DDW44_22075 DNA helicase RecG\tK03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]" }, { "name":"DDW44_07935 DNA repair protein RecO\tK03584 recO; DNA repair protein RecO (recombination protein O)" }, { "name":"DDW44_15960 recombination protein RecR\tK06187 recR; recombination protein RecR" }, { "name":"DDW44_07300 recN; DNA repair protein RecN\tK03631 recN; DNA repair protein RecN (Recombination protein N)" }, { "name":"DDW44_05825 type I-E CRISPR-associated endonuclease Cas1\tK15342 cas1; CRISP-associated protein Cas1" }, { "name":"DDW44_14405 ATP-binding protein\tK06915 herA; DNA double-strand break repair helicase HerA and related ATPase" }, { "name":"DDW44_20830 Ku protein\tK10979 ku; DNA end-binding protein Ku" }, { "name":"DDW44_30955 Ku protein\tK10979 ku; DNA end-binding protein Ku" }, { "name":"DDW44_20825 ATP-dependent DNA ligase\tK01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]" }, { "name":"DDW44_29360 ATP-dependent DNA ligase\tK01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]" }, { "name":"DDW44_15115 DNA gyrase subunit A\tK02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]" }, { "name":"DDW44_23390 DNA topoisomerase IV\tK02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]" }, { "name":"DDW44_15110 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B\tK02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]" }, { "name":"DDW44_23365 type IIA DNA topoisomerase subunit B\tK02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]" }, { "name":"DDW44_16465 topA; type I DNA topoisomerase\tK03168 topA; DNA topoisomerase I [EC:5.6.2.1]" }, { "name":"DDW44_09765 DNA-binding protein HU 1\tK03530 hupB; DNA-binding protein HU-beta" }, { "name":"DDW44_22015 DNA-binding protein\tK03530 hupB; DNA-binding protein HU-beta" }, { "name":"DDW44_23325 recombinase RecQ\tK03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]" }, { "name":"DDW44_10885 DNA polymerase IV\tK02346 dinB; DNA polymerase IV [EC:2.7.7.7]" }, { "name":"DDW44_23270 transcriptional repressor LexA\tK01356 lexA; repressor LexA [EC:3.4.21.88]" }, { "name":"DDW44_07005 DNA polymerase III subunit alpha\tK14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]" }, { "name":"DDW44_01160 DNA polymerase\/3'-5' exonuclease PolX\tK02347 polX; DNA polymerase (family X)" }, { "name":"DDW44_23265 ATP-dependent helicase\tK03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]" }, { "name":"DDW44_23035 ATP-dependent helicase\tK03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]" }, { "name":"DDW44_07270 NUDIX hydrolase\tK01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]" }, { "name":"DDW44_20440 ribonucleoside-diphosphate reductase subunit alpha\tK00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]" }, { "name":"DDW44_23280 vitamin B12-dependent ribonucleotide reductase\tK00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]" }, { "name":"DDW44_20435 ribonucleoside-diphosphate reductase\tK00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]" } ] }, { "name":"03029 Mitochondrial biogenesis [BR:stir03029]", "children":[ { "name":"DDW44_22770 translation initiation factor IF-2\tK02519 infB; translation initiation factor IF-2" }, { "name":"DDW44_02070 translation initiation factor IF-3\tK02520 infC; translation initiation factor IF-3" }, { "name":"DDW44_22280 elongation factor Ts\tK02357 tsf; elongation factor Ts" }, { "name":"DDW44_10705 tuf; elongation factor Tu\tK02358 tuf; elongation factor Tu" }, { "name":"DDW44_17975 tuf; elongation factor Tu\tK02358 tuf; elongation factor Tu" }, { "name":"DDW44_11625 elongation factor G-like protein EF-G2\tK02355 fusA; elongation factor G" }, { "name":"DDW44_17970 fusA; elongation factor G\tK02355 fusA; elongation factor G" }, { "name":"DDW44_07975 GTPase Era\tK03595 era; GTPase" }, { "name":"DDW44_07540 tyrosine--tRNA ligase\tK01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]" }, { "name":"DDW44_08150 leucine--tRNA ligase\tK01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]" }, { "name":"DDW44_15635 aspartate--tRNA ligase\tK01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]" }, { "name":"DDW44_07905 glycine--tRNA ligase\tK01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]" }, { "name":"DDW44_17195 arginine--tRNA ligase\tK01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]" }, { "name":"DDW44_20945 hypothetical protein\tK01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]" }, { "name":"DDW44_09205 amidase\tK02433 gatA; aspartyl-tRNA(Asn)\/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]" }, { "name":"DDW44_21575 Asp-tRNA(Asn)\/Glu-tRNA(Gln) amidotransferase GatCAB subunit A\tK02433 gatA; aspartyl-tRNA(Asn)\/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]" }, { "name":"DDW44_21585 Asp-tRNA(Asn)\/Glu-tRNA(Gln) amidotransferase subunit GatB\tK02434 gatB; aspartyl-tRNA(Asn)\/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]" }, { "name":"DDW44_21570 Asp-tRNA(Asn)\/Glu-tRNA(Gln) amidotransferase subunit GatC\tK02435 gatC; aspartyl-tRNA(Asn)\/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]" }, { "name":"DDW44_14940 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"DDW44_05325 molecular chaperone DnaK\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"DDW44_28075 hypothetical protein\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"DDW44_05330 nucleotide exchange factor GrpE\tK03687 GRPE; molecular chaperone GrpE" }, { "name":"DDW44_13765 groL; chaperonin GroEL\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"DDW44_18285 groL; chaperonin GroEL\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"DDW44_09460 co-chaperone GroES\tK04078 groES; chaperonin GroES" }, { "name":"DDW44_18280 co-chaperone GroES\tK04078 groES; chaperonin GroES" }, { "name":"DDW44_05335 molecular chaperone DnaJ\tK03686 dnaJ; molecular chaperone DnaJ" }, { "name":"DDW44_08060 molecular chaperone DnaJ\tK03686 dnaJ; molecular chaperone DnaJ" }, { "name":"DDW44_04085 cysteine desulfurase\tK04487 iscS; cysteine desulfurase [EC:2.8.1.7]" }, { "name":"DDW44_21525 cysteine desulfurase\tK04487 iscS; cysteine desulfurase [EC:2.8.1.7]" }, { "name":"DDW44_20035 MRP family ATP-binding protein\tK03593 mrp; ATP-binding protein involved in chromosome partitioning" }, { "name":"DDW44_02870 protoheme IX farnesyltransferase\tK02257 COX10; heme o synthase [EC:2.5.1.141]" }, { "name":"DDW44_02855 cytochrome B\tK02259 COX15; heme a synthase [EC:1.17.99.9]" }, { "name":"DDW44_09400 hypothetical protein\tK03217 yidC; YidC\/Oxa1 family membrane protein insertase" }, { "name":"DDW44_15055 membrane protein insertase YidC\tK03217 yidC; YidC\/Oxa1 family membrane protein insertase" }, { "name":"DDW44_14695 hypothetical protein\tK07152 SCO1; protein SCO1" } ] } ] }, { "name":"09183 Protein families: signaling and cellular processes", "children":[ { "name":"02000 Transporters [BR:stir02000]", "children":[ { "name":"DDW44_06355 multidrug ABC transporter ATP-binding protein\tK18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump" }, { "name":"DDW44_06360 multidrug ABC transporter ATP-binding protein\tK18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump" }, { "name":"DDW44_01635 multidrug ABC transporter ATP-binding protein\tK06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial" }, { "name":"DDW44_08830 ABC transporter ATP-binding protein\tK06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial" }, { "name":"DDW44_21390 ABC transporter\tK06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial" }, { "name":"DDW44_21395 ABC transporter\tK06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial" }, { "name":"DDW44_28910 ABC transporter\tK06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial" }, { "name":"DDW44_14800 ABC transporter\tK16014 cydCD; ATP-binding cassette, subfamily C, bacterial CydCD" }, { "name":"DDW44_12150 glycerophosphodiester phosphodiesterase\tK15738 uup; ABC transport system ATP-binding\/permease protein" }, { "name":"DDW44_07455 ABC transporter ATP-binding protein\tK21397 K21397; ABC transport system ATP-binding\/permease protein" }, { "name":"DDW44_24955 ABC transporter ATP-binding protein\tK21397 K21397; ABC transport system ATP-binding\/permease protein" }, { "name":"DDW44_23715 ABC transporter substrate-binding protein\tK15553 ssuA; sulfonate transport system substrate-binding protein" }, { "name":"DDW44_24755 sulfate ABC transporter substrate-binding protein\tK15553 ssuA; sulfonate transport system substrate-binding protein" }, { "name":"DDW44_23710 ABC transporter permease\tK15554 ssuC; sulfonate transport system permease protein" }, { "name":"DDW44_24745 ABC transporter permease\tK15554 ssuC; sulfonate transport system permease protein" }, { "name":"DDW44_23705 ABC transporter ATP-binding protein\tK15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]" }, { "name":"DDW44_24750 ABC transporter ATP-binding protein\tK15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]" }, { "name":"DDW44_17240 iron ABC transporter substrate-binding protein\tK02012 afuA; iron(III) transport system substrate-binding protein" }, { "name":"DDW44_17235 iron ABC transporter permease\tK02011 afuB; iron(III) transport system permease protein" }, { "name":"DDW44_17230 ABC transporter ATP-binding protein\tK02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]" }, { "name":"DDW44_22320 thiamine ABC transporter substrate-binding protein\tK02064 thiB; thiamine transport system substrate-binding protein" }, { "name":"DDW44_22325 iron ABC transporter permease\tK02063 thiP; thiamine transport system permease protein" }, { "name":"DDW44_22330 iron ABC transporter ATP-binding protein\tK02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]" }, { "name":"DDW44_00245 ABC transporter substrate-binding protein\tK11069 potD; spermidine\/putrescine transport system substrate-binding protein" }, { "name":"DDW44_22360 polyamine ABC transporter substrate-binding protein\tK11069 potD; spermidine\/putrescine transport system substrate-binding protein" }, { "name":"DDW44_22390 ABC transporter substrate-binding protein\tK11069 potD; spermidine\/putrescine transport system substrate-binding protein" }, { "name":"DDW44_00235 ABC transporter permease\tK11070 potC; spermidine\/putrescine transport system permease protein" }, { "name":"DDW44_22405 ABC transporter permease\tK11070 potC; spermidine\/putrescine transport system permease protein" }, { "name":"DDW44_00240 ABC transporter permease\tK11071 potB; spermidine\/putrescine transport system permease protein" }, { "name":"DDW44_22400 ABC transporter permease\tK11071 potB; spermidine\/putrescine transport system permease protein" }, { "name":"DDW44_00230 spermidine\/putrescine ABC transporter ATP-binding protein\tK11072 potA; spermidine\/putrescine transport system ATP-binding protein [EC:7.6.2.11]" }, { "name":"DDW44_22395 ABC transporter ATP-binding protein\tK11072 potA; spermidine\/putrescine transport system ATP-binding protein [EC:7.6.2.11]" }, { "name":"DDW44_19740 ABC transporter substrate-binding protein\tK02055 ABC.SP.S; putative spermidine\/putrescine transport system substrate-binding protein" }, { "name":"DDW44_19750 ABC transporter permease\tK02053 ABC.SP.P; putative spermidine\/putrescine transport system permease protein" }, { "name":"DDW44_19745 ABC transporter\tK02054 ABC.SP.P1; putative spermidine\/putrescine transport system permease protein" }, { "name":"DDW44_19755 ABC transporter ATP-binding protein\tK02052 ABC.SP.A; putative spermidine\/putrescine transport system ATP-binding protein" }, { "name":"DDW44_02155 glycine\/betaine ABC transporter permease\tK02001 proW; glycine betaine\/proline transport system permease protein" }, { "name":"DDW44_18590 glycine\/betaine ABC transporter substrate-binding protein\tK02002 proX; glycine betaine\/proline transport system substrate-binding protein" }, { "name":"DDW44_18585 glycine\/betaine ABC transporter permease\tK02001 proW; glycine betaine\/proline transport system permease protein" }, { "name":"DDW44_02160 glycine\/betaine ABC transporter ATP-binding protein\tK02000 proV; glycine betaine\/proline transport system ATP-binding protein [EC:7.6.2.9]" }, { "name":"DDW44_18580 glycine\/betaine ABC transporter ATP-binding protein\tK02000 proV; glycine betaine\/proline transport system ATP-binding protein [EC:7.6.2.9]" }, { "name":"DDW44_16835 amino acid ABC transporter substrate-binding protein\tK05845 opuC; osmoprotectant transport system substrate-binding protein" }, { "name":"DDW44_29005 ABC transporter substrate-binding protein\tK05845 opuC; osmoprotectant transport system substrate-binding protein" }, { "name":"DDW44_16825 ABC transporter permease\tK05846 opuBD; osmoprotectant transport system permease protein" }, { "name":"DDW44_16830 ABC transporter permease\tK05846 opuBD; osmoprotectant transport system permease protein" }, { "name":"DDW44_28995 ABC transporter permease\tK05846 opuBD; osmoprotectant transport system permease protein" }, { "name":"DDW44_29000 ABC transporter permease\tK05846 opuBD; osmoprotectant transport system permease protein" }, { "name":"DDW44_16820 ABC transporter ATP-binding protein\tK05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]" }, { "name":"DDW44_29010 ABC transporter ATP-binding protein\tK05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]" }, { "name":"DDW44_14040 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC\tK10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]" }, { "name":"DDW44_04420 sugar ABC transporter substrate-binding protein\tK15770 cycB; arabinogalactan oligomer \/ maltooligosaccharide transport system substrate-binding protein" }, { "name":"DDW44_04415 sugar ABC transporter permease\tK15771 ganP; arabinogalactan oligomer \/ maltooligosaccharide transport system permease protein" }, { "name":"DDW44_04410 ABC transporter permease\tK15772 ganQ; arabinogalactan oligomer \/ maltooligosaccharide transport system permease protein" }, { "name":"DDW44_01065 carbohydrate ABC transporter substrate-binding protein\tK10232 aglE; alpha-glucoside transport system substrate-binding protein" }, { "name":"DDW44_09970 sugar ABC transporter substrate-binding protein\tK10232 aglE; alpha-glucoside transport system substrate-binding protein" }, { "name":"DDW44_01070 ABC transporter permease\tK10233 aglF; alpha-glucoside transport system permease protein" }, { "name":"DDW44_09975 ABC transporter permease\tK10233 aglF; alpha-glucoside transport system permease protein" }, { "name":"DDW44_01075 carbohydrate ABC transporter permease\tK10234 aglG; alpha-glucoside transport system permease protein" }, { "name":"DDW44_09980 sugar ABC transporter permease\tK10234 aglG; alpha-glucoside transport system permease protein" }, { "name":"DDW44_00120 ABC transporter substrate-binding protein\tK10236 thuE; trehalose\/maltose transport system substrate-binding protein" }, { "name":"DDW44_01055 ABC transporter substrate-binding protein\tK10236 thuE; trehalose\/maltose transport system substrate-binding protein" }, { "name":"DDW44_24375 ngcE; carbohydrate ABC transporter, N-acetylglucosamine\/diacetylchitobiose-binding protein\tK10200 ngcE; N-acetylglucosamine transport system substrate-binding protein" }, { "name":"DDW44_24380 ABC transporter permease\tK10201 ngcF; N-acetylglucosamine transport system permease protein" }, { "name":"DDW44_24385 carbohydrate ABC transporter permease\tK10202 ngcG; N-acetylglucosamine transport system permease protein" }, { "name":"DDW44_09090 carbohydrate ABC transporter substrate-binding protein\tK10240 cebE; cellobiose transport system substrate-binding protein" }, { "name":"DDW44_09095 ABC transporter permease\tK10241 cebF; cellobiose transport system permease protein" }, { "name":"DDW44_09100 sugar ABC transporter permease\tK10242 cebG; cellobiose transport system permease protein" }, { "name":"DDW44_20465 sugar ABC transporter substrate-binding protein\tK17329 dasA; N,N'-diacetylchitobiose transport system substrate-binding protein" }, { "name":"DDW44_20470 sugar ABC transporter permease\tK17330 dasB; N,N'-diacetylchitobiose transport system permease protein" }, { "name":"DDW44_20475 sugar ABC transporter permease\tK17331 dasC; N,N'-diacetylchitobiose transport system permease protein" }, { "name":"DDW44_01225 ABC transporter substrate-binding protein\tK17244 chiE; putative chitobiose transport system substrate-binding protein" }, { "name":"DDW44_01220 ABC transporter permease\tK17245 chiF; putative chitobiose transport system permease protein" }, { "name":"DDW44_01215 ABC transporter permease\tK17246 chiG; putative chitobiose transport system permease protein" }, { "name":"DDW44_24395 ABC transporter substrate-binding protein\tK10543 xylF; D-xylose transport system substrate-binding protein" }, { "name":"DDW44_29125 ABC transporter substrate-binding protein\tK10543 xylF; D-xylose transport system substrate-binding protein" }, { "name":"DDW44_24405 ABC transporter permease\tK10544 xylH; D-xylose transport system permease protein" }, { "name":"DDW44_29115 ABC transporter permease\tK10544 xylH; D-xylose transport system permease protein" }, { "name":"DDW44_24400 sugar ABC transporter ATP-binding protein\tK10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]" }, { "name":"DDW44_29120 sugar ABC transporter ATP-binding protein\tK10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]" }, { "name":"DDW44_30295 transporter\tK10439 rbsB; ribose transport system substrate-binding protein" }, { "name":"DDW44_30290 sugar ABC transporter ATP-binding protein\tK10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]" }, { "name":"DDW44_30090 ABC transporter ATP-binding protein\tK17324 glpS; glycerol transport system ATP-binding protein" }, { "name":"DDW44_30085 ABC transporter ATP-binding protein\tK17325 glpT; glycerol transport system ATP-binding protein" }, { "name":"DDW44_31275 phosphate ABC transporter\tK05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein" }, { "name":"DDW44_18860 BMP family ABC transporter substrate-binding protein\tK07335 bmpA; basic membrane protein A and related proteins" }, { "name":"DDW44_18870 sugar ABC transporter permease\tK23535 nupB; general nucleoside transport system permease protein" }, { "name":"DDW44_18875 ABC transporter permease\tK23536 nupC; general nucleoside transport system permease protein" }, { "name":"DDW44_18865 ABC transporter ATP-binding protein\tK23537 nupA; general nucleoside transport system ATP-binding protein" }, { "name":"DDW44_05690 ABC transporter permease\tK02069 STAR2; UDP-glucose\/iron transport system permease protein" }, { "name":"DDW44_25690 ABC transporter substrate-binding protein\tK02067 mlaD; phospholipid\/cholesterol\/gamma-HCH transport system substrate-binding protein" }, { "name":"DDW44_25695 mammalian cell entry protein\tK02067 mlaD; phospholipid\/cholesterol\/gamma-HCH transport system substrate-binding protein" }, { "name":"DDW44_25700 mammalian cell entry protein\tK02067 mlaD; phospholipid\/cholesterol\/gamma-HCH transport system substrate-binding protein" }, { "name":"DDW44_25705 MCE family protein\tK02067 mlaD; phospholipid\/cholesterol\/gamma-HCH transport system substrate-binding protein" }, { "name":"DDW44_25710 MCE family protein\tK02067 mlaD; phospholipid\/cholesterol\/gamma-HCH transport system substrate-binding protein" }, { "name":"DDW44_25715 mammalian cell entry protein\tK02067 mlaD; phospholipid\/cholesterol\/gamma-HCH transport system substrate-binding protein" }, { "name":"DDW44_25720 ABC transporter permease\tK02066 mlaE; phospholipid\/cholesterol\/gamma-HCH transport system permease protein" }, { "name":"DDW44_25725 ABC transporter permease\tK02066 mlaE; phospholipid\/cholesterol\/gamma-HCH transport system permease protein" }, { "name":"DDW44_25730 ABC transporter ATP-binding protein\tK02065 mlaF; phospholipid\/cholesterol\/gamma-HCH transport system ATP-binding protein" }, { "name":"DDW44_25680 hypothetical protein\tK18481 mas; Mce-associated membrane protein" }, { "name":"DDW44_25685 hypothetical protein\tK18481 mas; Mce-associated membrane protein" }, { "name":"DDW44_13810 ABC transporter substrate-binding protein\tK02027 ABC.MS.S; multiple sugar transport system substrate-binding protein" }, { "name":"DDW44_20835 sugar ABC transporter substrate-binding protein\tK02027 ABC.MS.S; multiple sugar transport system substrate-binding protein" }, { "name":"DDW44_26640 sugar ABC transporter substrate-binding protein\tK02027 ABC.MS.S; multiple sugar transport system substrate-binding protein" }, { "name":"DDW44_30105 ABC transporter substrate-binding protein\tK02027 ABC.MS.S; multiple sugar transport system substrate-binding protein" }, { "name":"DDW44_20840 sugar ABC transporter permease\tK02025 ABC.MS.P; multiple sugar transport system permease protein" }, { "name":"DDW44_26635 sugar ABC transporter permease\tK02025 ABC.MS.P; multiple sugar transport system permease protein" }, { "name":"DDW44_30100 sugar ABC transporter permease\tK02025 ABC.MS.P; multiple sugar transport system permease protein" }, { "name":"DDW44_20845 ABC transporter permease\tK02026 ABC.MS.P1; multiple sugar transport system permease protein" }, { "name":"DDW44_26630 sugar ABC transporter permease\tK02026 ABC.MS.P1; multiple sugar transport system permease protein" }, { "name":"DDW44_30095 carbohydrate ABC transporter permease\tK02026 ABC.MS.P1; multiple sugar transport system permease protein" }, { "name":"DDW44_26015 sugar ABC transporter substrate-binding protein\tK02058 ABC.SS.S; simple sugar transport system substrate-binding protein" }, { "name":"DDW44_26020 sugar ABC transporter substrate-binding protein\tK02058 ABC.SS.S; simple sugar transport system substrate-binding protein" }, { "name":"DDW44_26025 ABC transporter permease\tK02057 ABC.SS.P; simple sugar transport system permease protein" }, { "name":"DDW44_26030 sugar ABC transporter ATP-binding protein\tK02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]" }, { "name":"DDW44_05170 phosphate ABC transporter substrate-binding protein PstS family protein\tK02040 pstS; phosphate transport system substrate-binding protein" }, { "name":"DDW44_06610 pstS; phosphate ABC transporter substrate-binding protein PstS\tK02040 pstS; phosphate transport system substrate-binding protein" }, { "name":"DDW44_05165 pstC; phosphate ABC transporter permease subunit PstC\tK02037 pstC; phosphate transport system permease protein" }, { "name":"DDW44_06615 pstC; phosphate ABC transporter permease subunit PstC\tK02037 pstC; phosphate transport system permease protein" }, { "name":"DDW44_05160 pstA; phosphate ABC transporter permease PtsA\tK02038 pstA; phosphate transport system permease protein" }, { "name":"DDW44_06620 pstA; phosphate ABC transporter permease PtsA\tK02038 pstA; phosphate transport system permease protein" }, { "name":"DDW44_05155 pstB; phosphate ABC transporter ATP-binding protein\tK02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]" }, { "name":"DDW44_06625 phosphate ABC transporter ATP-binding protein\tK02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]" }, { "name":"DDW44_01105 glutamate-binding protein\tK10005 gluB; glutamate transport system substrate-binding protein" }, { "name":"DDW44_23160 glutamate-binding protein\tK10005 gluB; glutamate transport system substrate-binding protein" }, { "name":"DDW44_01100 glutamate ABC transporter permease\tK10006 gluC; glutamate transport system permease protein" }, { "name":"DDW44_23155 amino acid ABC transporter permease\tK10006 gluC; glutamate transport system permease protein" }, { "name":"DDW44_01095 amino acid ABC transporter permease\tK10007 gluD; glutamate transport system permease protein" }, { "name":"DDW44_23150 amino acid ABC transporter permease\tK10007 gluD; glutamate transport system permease protein" }, { "name":"DDW44_01110 amino acid ABC transporter ATP-binding protein\tK10008 gluA; glutamate transport system ATP-binding protein [EC:7.4.2.1]" }, { "name":"DDW44_23165 amino acid ABC transporter ATP-binding protein\tK10008 gluA; glutamate transport system ATP-binding protein [EC:7.4.2.1]" }, { "name":"DDW44_03200 branched-chain amino acid ABC transporter substrate-binding protein\tK01999 livK; branched-chain amino acid transport system substrate-binding protein" }, { "name":"DDW44_13325 hypothetical protein\tK01999 livK; branched-chain amino acid transport system substrate-binding protein" }, { "name":"DDW44_03205 branched-chain amino acid ABC transporter permease\tK01997 livH; branched-chain amino acid transport system permease protein" }, { "name":"DDW44_25560 branched-chain amino acid ABC transporter permease\tK01997 livH; branched-chain amino acid transport system permease protein" }, { "name":"DDW44_03210 branched-chain amino acid ABC transporter permease\tK01998 livM; branched-chain amino acid transport system permease protein" }, { "name":"DDW44_25565 branched-chain amino acid ABC transporter permease\tK01998 livM; branched-chain amino acid transport system permease protein" }, { "name":"DDW44_03215 ABC transporter ATP-binding protein\tK01995 livG; branched-chain amino acid transport system ATP-binding protein" }, { "name":"DDW44_25555 ABC transporter ATP-binding protein\tK01995 livG; branched-chain amino acid transport system ATP-binding protein" }, { "name":"DDW44_03220 ABC transporter ATP-binding protein\tK01996 livF; branched-chain amino acid transport system ATP-binding protein" }, { "name":"DDW44_25550 ABC transporter ATP-binding protein\tK01996 livF; branched-chain amino acid transport system ATP-binding protein" }, { "name":"DDW44_01860 metal ABC transporter substrate-binding protein\tK02073 metQ; D-methionine transport system substrate-binding protein" }, { "name":"DDW44_01865 ABC transporter permease\tK02072 metI; D-methionine transport system permease protein" }, { "name":"DDW44_01870 methionine ABC transporter ATP-binding protein\tK02071 metN; D-methionine transport system ATP-binding protein" }, { "name":"DDW44_08585 sugar-binding protein\tK02030 ABC.PA.S; polar amino acid transport system substrate-binding protein" }, { "name":"DDW44_09215 ehuB; ectoine\/hydroxyectoine ABC transporter substrate-binding protein EhuB\tK02030 ABC.PA.S; polar amino acid transport system substrate-binding protein" }, { "name":"DDW44_20630 atrA protein\tK02030 ABC.PA.S; polar amino acid transport system substrate-binding protein" }, { "name":"DDW44_09220 ehuC; ectoine\/hydroxyectoine ABC transporter permease subunit EhuC\tK02029 ABC.PA.P; polar amino acid transport system permease protein" }, { "name":"DDW44_09225 ehuD; ectoine\/hydroxyectoine ABC transporter permease subunit EhuD\tK02029 ABC.PA.P; polar amino acid transport system permease protein" }, { "name":"DDW44_20625 amino acid ABC transporter permease\tK02029 ABC.PA.P; polar amino acid transport system permease protein" }, { "name":"DDW44_09230 amino acid ABC transporter ATP-binding protein\tK02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]" }, { "name":"DDW44_20620 amino acid ABC transporter ATP-binding protein\tK02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]" }, { "name":"DDW44_19845 ABC transporter substrate-binding protein\tK15580 oppA; oligopeptide transport system substrate-binding protein" }, { "name":"DDW44_19870 peptide ABC transporter substrate-binding protein\tK15580 oppA; oligopeptide transport system substrate-binding protein" }, { "name":"DDW44_19850 ABC transporter permease\tK15581 oppB; oligopeptide transport system permease protein" }, { "name":"DDW44_19875 ABC transporter permease\tK15581 oppB; oligopeptide transport system permease protein" }, { "name":"DDW44_19855 ABC transporter permease\tK15582 oppC; oligopeptide transport system permease protein" }, { "name":"DDW44_19880 ABC transporter permease\tK15582 oppC; oligopeptide transport system permease protein" }, { "name":"DDW44_19860 ABC transporter ATP-binding protein\tK15583 oppD; oligopeptide transport system ATP-binding protein" }, { "name":"DDW44_19885 ABC transporter ATP-binding protein\tK15583 oppD; oligopeptide transport system ATP-binding protein" }, { "name":"DDW44_19865 dipeptide ABC transporter ATP-binding protein\tK10823 oppF; oligopeptide transport system ATP-binding protein" }, { "name":"DDW44_19890 peptide ABC transporter ATP-binding protein\tK10823 oppF; oligopeptide transport system ATP-binding protein" }, { "name":"DDW44_02300 ABC transporter substrate-binding protein\tK02035 ABC.PE.S; peptide\/nickel transport system substrate-binding protein" }, { "name":"DDW44_02305 peptide-binding protein\tK02035 ABC.PE.S; peptide\/nickel transport system substrate-binding protein" }, { "name":"DDW44_10775 peptide-binding protein\tK02035 ABC.PE.S; peptide\/nickel transport system substrate-binding protein" }, { "name":"DDW44_18680 peptide-binding protein\tK02035 ABC.PE.S; peptide\/nickel transport system substrate-binding protein" }, { "name":"DDW44_19835 hypothetical protein\tK02035 ABC.PE.S; peptide\/nickel transport system substrate-binding protein" }, { "name":"DDW44_21475 ABC transporter substrate-binding protein\tK02035 ABC.PE.S; peptide\/nickel transport system substrate-binding protein" }, { "name":"DDW44_22820 ABC transporter substrate-binding protein\tK02035 ABC.PE.S; peptide\/nickel transport system substrate-binding protein" }, { "name":"DDW44_23820 ABC transporter substrate-binding protein\tK02035 ABC.PE.S; peptide\/nickel transport system substrate-binding protein" }, { "name":"DDW44_12800 ABC transporter permease\tK02033 ABC.PE.P; peptide\/nickel transport system permease protein" }, { "name":"DDW44_21480 ABC transporter permease\tK02033 ABC.PE.P; peptide\/nickel transport system permease protein" }, { "name":"DDW44_22815 ABC transporter permease\tK02033 ABC.PE.P; peptide\/nickel transport system permease protein" }, { "name":"DDW44_23815 ABC transporter permease\tK02033 ABC.PE.P; peptide\/nickel transport system permease protein" }, { "name":"DDW44_12805 ABC transporter permease\tK02034 ABC.PE.P1; peptide\/nickel transport system permease protein" }, { "name":"DDW44_21485 ABC transporter permease\tK02034 ABC.PE.P1; peptide\/nickel transport system permease protein" }, { "name":"DDW44_22810 ABC transporter permease\tK02034 ABC.PE.P1; peptide\/nickel transport system permease protein" }, { "name":"DDW44_23810 ABC transporter permease\tK02034 ABC.PE.P1; peptide\/nickel transport system permease protein" }, { "name":"DDW44_12795 peptide ABC transporter ATP-binding protein\tK02031 ddpD; peptide\/nickel transport system ATP-binding protein" }, { "name":"DDW44_21490 dipeptide\/oligopeptide\/nickel ABC transporter ATP-binding protein\tK02031 ddpD; peptide\/nickel transport system ATP-binding protein" }, { "name":"DDW44_22805 dipeptide\/oligopeptide\/nickel ABC transporter ATP-binding protein\tK02031 ddpD; peptide\/nickel transport system ATP-binding protein" }, { "name":"DDW44_23805 ABC transporter ATP-binding protein\tK02031 ddpD; peptide\/nickel transport system ATP-binding protein" }, { "name":"DDW44_12790 ABC transporter ATP-binding protein\tK02032 ddpF; peptide\/nickel transport system ATP-binding protein" }, { "name":"DDW44_21495 oligopeptide ABC transporter ATP-binding protein\tK02032 ddpF; peptide\/nickel transport system ATP-binding protein" }, { "name":"DDW44_28575 ABC transporter substrate-binding protein\tK23227 fhuD; ferric hydroxamate transport system substrate-binding protein" }, { "name":"DDW44_28570 ABC transporter permease\tK23228 fhuB; ferric hydroxamate transport system permease protein" }, { "name":"DDW44_28580 fecE; Fe(3+)-dicitrate ABC transporter ATP-binding protein\tK10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]" }, { "name":"DDW44_08985 ABC transporter substrate-binding protein\tK25287 desE; iron-desferrioxamine transport system substrate-binding protein" }, { "name":"DDW44_15855 ABC transporter substrate-binding protein\tK25287 desE; iron-desferrioxamine transport system substrate-binding protein" }, { "name":"DDW44_07335 iron ABC transporter permease\tK23186 fepD; iron-siderophore transport system permease protein" }, { "name":"DDW44_07330 hypothetical protein\tK23187 fepG; iron-siderophore transport system permease protein" }, { "name":"DDW44_07325 ABC transporter ATP-binding protein\tK23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]" }, { "name":"DDW44_12730 hypothetical protein\tK02016 ABC.FEV.S; iron complex transport system substrate-binding protein" }, { "name":"DDW44_25415 ABC transporter substrate-binding protein\tK02016 ABC.FEV.S; iron complex transport system substrate-binding protein" }, { "name":"DDW44_29240 ABC transporter substrate-binding protein\tK02016 ABC.FEV.S; iron complex transport system substrate-binding protein" }, { "name":"DDW44_12725 iron ABC transporter permease\tK02015 ABC.FEV.P; iron complex transport system permease protein" }, { "name":"DDW44_25420 iron ABC transporter permease\tK02015 ABC.FEV.P; iron complex transport system permease protein" }, { "name":"DDW44_29245 iron ABC transporter permease\tK02015 ABC.FEV.P; iron complex transport system permease protein" }, { "name":"DDW44_07415 iron ABC transporter ATP-binding protein\tK02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]" }, { "name":"DDW44_12720 heme ABC transporter ATP-binding protein\tK02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]" }, { "name":"DDW44_25425 ABC transporter ATP-binding protein\tK02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]" }, { "name":"DDW44_29250 histidinol phosphatase\tK02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]" }, { "name":"DDW44_07910 zinc ABC transporter substrate-binding protein\tK09815 znuA; zinc transport system substrate-binding protein" }, { "name":"DDW44_07920 ABC transporter\tK09816 znuB; zinc transport system permease protein" }, { "name":"DDW44_07915 metal ABC transporter ATP-binding protein\tK09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]" }, { "name":"DDW44_15805 energy-coupling factor ABC transporter substrate-binding protein\tK02009 cbiN; cobalt\/nickel transport protein" }, { "name":"DDW44_12290 cbiQ; cobalt ECF transporter T component CbiQ\tK02008 cbiQ; cobalt\/nickel transport system permease protein" }, { "name":"DDW44_15810 cbiQ; cobalt ECF transporter T component CbiQ\tK02008 cbiQ; cobalt\/nickel transport system permease protein" }, { "name":"DDW44_12295 cobalt ABC transporter permease\tK02007 cbiM; cobalt\/nickel transport system permease protein" }, { "name":"DDW44_15800 energy-coupling factor ABC transporter permease\tK02007 cbiM; cobalt\/nickel transport system permease protein" }, { "name":"DDW44_12285 ABC transporter ATP-binding protein\tK02006 cbiO; cobalt\/nickel transport system ATP-binding protein" }, { "name":"DDW44_15815 cobalt ABC transporter\tK02006 cbiO; cobalt\/nickel transport system ATP-binding protein" }, { "name":"DDW44_08450 biotin transporter BioY\tK03523 bioY; biotin transport system substrate-specific component" }, { "name":"DDW44_05600 ECF transporter S component\tK16927 cbrT; energy-coupling factor transport system substrate-specific component" }, { "name":"DDW44_05590 cobalt ABC transporter permease\tK16785 ecfT; energy-coupling factor transport system permease protein" }, { "name":"DDW44_05595 ATPase\tK01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]" }, { "name":"DDW44_06210 ABC transporter substrate-binding protein\tK02077 ABC.ZM.S; zinc\/manganese transport system substrate-binding protein" }, { "name":"DDW44_27970 zinc ABC transporter substrate-binding protein\tK02077 ABC.ZM.S; zinc\/manganese transport system substrate-binding protein" }, { "name":"DDW44_06200 ABC transporter permease\tK02075 ABC.ZM.P; zinc\/manganese transport system permease protein" }, { "name":"DDW44_27960 ABC transporter permease\tK02075 ABC.ZM.P; zinc\/manganese transport system permease protein" }, { "name":"DDW44_06205 ABC transporter ATP-binding protein\tK02074 ABC.ZM.A; zinc\/manganese transport system ATP-binding protein" }, { "name":"DDW44_27955 ABC transporter ATP-binding protein\tK02074 ABC.ZM.A; zinc\/manganese transport system ATP-binding protein" }, { "name":"DDW44_10000 ABC transporter\tK09692 tagG; teichoic acid transport system permease protein" }, { "name":"DDW44_27230 ABC transporter\tK09692 tagG; teichoic acid transport system permease protein" }, { "name":"DDW44_10005 teichoic acid ABC transporter ATP-binding protein\tK09693 tagH; teichoic acid transport system ATP-binding protein [EC:7.5.2.4]" }, { "name":"DDW44_27235 ABC transporter ATP-binding protein\tK09693 tagH; teichoic acid transport system ATP-binding protein [EC:7.5.2.4]" }, { "name":"DDW44_04960 ABC transporter permease\tK25140 drrB; daunorubicin\/doxorubicin transport system permease protein" }, { "name":"DDW44_04955 daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein\tK25141 drrA; daunorubicin\/doxorubicin transport system ATP-binding protein" }, { "name":"DDW44_05505 ABC transporter permease\tK25149 narB; polyether ionophore transport system permease protein" }, { "name":"DDW44_05510 ABC transporter\tK25150 narA; polyether ionophore transport system ATP-binding protein" }, { "name":"DDW44_09860 ABC transporter permease\tK09811 ftsX; cell division transport system permease protein" }, { "name":"DDW44_09865 ftsE; cell division ATP-binding protein FtsE\tK09812 ftsE; cell division transport system ATP-binding protein" }, { "name":"DDW44_09480 transporter\tK25154 evrC; viologen exporter family transport system permease protein" }, { "name":"DDW44_09475 ABC transporter permease\tK25155 evrB; viologen exporter family transport system permease protein" }, { "name":"DDW44_09485 methionine ABC transporter ATP-binding protein\tK25156 evrA; viologen exporter family transport system ATP-binding protein" }, { "name":"DDW44_02850 ABC transporter\tK01992 ABC-2.P; ABC-2 type transport system permease protein" }, { "name":"DDW44_03550 transporter\tK01992 ABC-2.P; ABC-2 type transport system permease protein" }, { "name":"DDW44_08740 ABC transporter permease\tK01992 ABC-2.P; ABC-2 type transport system permease protein" }, { "name":"DDW44_13360 transporter\tK01992 ABC-2.P; ABC-2 type transport system permease protein" }, { "name":"DDW44_14225 hypothetical protein\tK01992 ABC-2.P; ABC-2 type transport system permease protein" }, { "name":"DDW44_14745 ABC transporter permease\tK01992 ABC-2.P; ABC-2 type transport system permease protein" }, { "name":"DDW44_14755 hypothetical protein\tK01992 ABC-2.P; ABC-2 type transport system permease protein" }, { "name":"DDW44_17060 antibiotic ABC transporter permease\tK01992 ABC-2.P; ABC-2 type transport system permease protein" }, { "name":"DDW44_17550 ABC transporter permease\tK01992 ABC-2.P; ABC-2 type transport system permease protein" }, { "name":"DDW44_19190 ABC transporter permease\tK01992 ABC-2.P; ABC-2 type transport system permease protein" }, { "name":"DDW44_21150 ABC transporter permease\tK01992 ABC-2.P; ABC-2 type transport system permease protein" }, { "name":"DDW44_21750 ABC transporter\tK01992 ABC-2.P; ABC-2 type transport system permease protein" }, { "name":"DDW44_27740 ABC transporter permease\tK01992 ABC-2.P; ABC-2 type transport system permease protein" }, { "name":"DDW44_28670 ABC transporter\tK01992 ABC-2.P; ABC-2 type transport system permease protein" }, { "name":"DDW44_02845 ABC transporter\tK01990 ABC-2.A; ABC-2 type transport system ATP-binding protein" }, { "name":"DDW44_03555 ABC transporter ATP-binding protein\tK01990 ABC-2.A; ABC-2 type transport system ATP-binding protein" }, { "name":"DDW44_03790 hypothetical protein\tK01990 ABC-2.A; ABC-2 type transport system ATP-binding protein" }, { "name":"DDW44_08745 ABC transporter ATP-binding protein\tK01990 ABC-2.A; ABC-2 type transport system ATP-binding protein" }, { "name":"DDW44_13355 ABC transporter ATP-binding protein\tK01990 ABC-2.A; ABC-2 type transport system ATP-binding protein" }, { "name":"DDW44_14220 multidrug ABC transporter ATP-binding protein\tK01990 ABC-2.A; ABC-2 type transport system ATP-binding protein" }, { "name":"DDW44_14750 ABC transporter ATP-binding protein\tK01990 ABC-2.A; ABC-2 type transport system ATP-binding protein" }, { "name":"DDW44_14760 ABC transporter ATP-binding protein\tK01990 ABC-2.A; ABC-2 type transport system ATP-binding protein" }, { "name":"DDW44_17055 multidrug ABC transporter ATP-binding protein\tK01990 ABC-2.A; ABC-2 type transport system ATP-binding protein" }, { "name":"DDW44_17545 multidrug ABC transporter ATP-binding protein\tK01990 ABC-2.A; ABC-2 type transport system ATP-binding protein" }, { "name":"DDW44_19185 daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein\tK01990 ABC-2.A; ABC-2 type transport system ATP-binding protein" }, { "name":"DDW44_21145 ABC transporter ATP-binding protein\tK01990 ABC-2.A; ABC-2 type transport system ATP-binding protein" }, { "name":"DDW44_21155 ABC transporter ATP-binding protein\tK01990 ABC-2.A; ABC-2 type transport system ATP-binding protein" }, { "name":"DDW44_21755 ABC transporter ATP-binding protein\tK01990 ABC-2.A; ABC-2 type transport system ATP-binding protein" }, { "name":"DDW44_27745 daunorubicin\/doxorubicin resistance ABC transporter ATP-binding protein DrrA\tK01990 ABC-2.A; ABC-2 type transport system ATP-binding protein" }, { "name":"DDW44_28665 ABC transporter\tK01990 ABC-2.A; ABC-2 type transport system ATP-binding protein" }, { "name":"DDW44_01040 peptide ABC transporter permease\tK02004 ABC.CD.P; putative ABC transport system permease protein" }, { "name":"DDW44_11840 ABC transporter\tK02004 ABC.CD.P; putative ABC transport system permease protein" }, { "name":"DDW44_11985 hypothetical protein\tK02004 ABC.CD.P; putative ABC transport system permease protein" }, { "name":"DDW44_15465 ABC transporter permease\tK02004 ABC.CD.P; putative ABC transport system permease protein" }, { "name":"DDW44_01045 ABC transporter ATP-binding protein\tK02003 ABC.CD.A; putative ABC transport system ATP-binding protein" }, { "name":"DDW44_11835 ABC transporter\tK02003 ABC.CD.A; putative ABC transport system ATP-binding protein" }, { "name":"DDW44_11990 peptide ABC transporter ATP-binding protein\tK02003 ABC.CD.A; putative ABC transport system ATP-binding protein" }, { "name":"DDW44_13720 peptide ABC transporter ATP-binding protein\tK02003 ABC.CD.A; putative ABC transport system ATP-binding protein" }, { "name":"DDW44_15470 ABC transporter ATP-binding protein\tK02003 ABC.CD.A; putative ABC transport system ATP-binding protein" }, { "name":"DDW44_22340 ABC transporter ATP-binding protein\tK02003 ABC.CD.A; putative ABC transport system ATP-binding protein" }, { "name":"DDW44_02820 sufC; Fe-S cluster assembly ATPase SufC\tK09013 sufC; Fe-S cluster assembly ATP-binding protein" }, { "name":"DDW44_23845 MATE family efflux transporter\tK26939 norM; MATE family, multidrug efflux pump" }, { "name":"DDW44_29225 MATE family efflux transporter\tK26939 norM; MATE family, multidrug efflux pump" }, { "name":"DDW44_14925 MATE family efflux transporter\tK26937 dinF; MATE family, multidrug efflux pump" }, { "name":"DDW44_31050 MFS transporter\tK03761 kgtP; MFS transporter, MHS family, alpha-ketoglutarate permease" }, { "name":"DDW44_28930 metabolite-proton symporter\tK03762 proP; MFS transporter, MHS family, proline\/betaine transporter" }, { "name":"DDW44_07485 MFS transporter\tK03449 MFS.CP; MFS transporter, CP family, cyanate transporter" }, { "name":"DDW44_09800 MFS transporter\tK02575 NRT2; MFS transporter, NNP family, nitrate\/nitrite transporter" }, { "name":"DDW44_04600 Bcr\/CflA family drug resistance efflux transporter\tK07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein" }, { "name":"DDW44_13685 MFS transporter\tK18553 cmlR; MFS transporter, DHA1 family, chloramphenicol resistance protein" }, { "name":"DDW44_15190 MFS transporter\tK18553 cmlR; MFS transporter, DHA1 family, chloramphenicol resistance protein" }, { "name":"DDW44_14900 MFS transporter\tK19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein" }, { "name":"DDW44_31080 MFS transporter\tK08152 lmrP; MFS transporter, DHA1 family, multidrug resistance protein B" }, { "name":"DDW44_01910 MFS transporter\tK08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein" }, { "name":"DDW44_07080 MFS transporter\tK08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein" }, { "name":"DDW44_31250 MFS transporter\tK08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein" }, { "name":"DDW44_18910 MFS transporter\tK08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein" }, { "name":"DDW44_11135 MFS transporter\tK06902 UMF1; MFS transporter, UMF1 family" }, { "name":"DDW44_10955 ptsP; phosphoenolpyruvate--protein phosphotransferase\tK08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]" }, { "name":"DDW44_23415 HPr family phosphocarrier protein\tK02784 ptsH; phosphocarrier protein HPr" }, { "name":"DDW44_10950 phosphoenolpyruvate--carbohydrate phosphotransferase\tK02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]" }, { "name":"DDW44_09530 PTS lactose transporter subunit IIC\tK02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]" }, { "name":"DDW44_09535 PTS lactose transporter subunit IIC\tK02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]" }, { "name":"DDW44_09525 PTS sugar transporter\tK02803 nagEb; N-acetylglucosamine PTS system EIIB component [EC:2.7.1.193]" }, { "name":"DDW44_12540 hypothetical protein\tK02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]" }, { "name":"DDW44_15795 PTS fructose transporter subunit IIA\tK05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121]" }, { "name":"DDW44_02325 aquaporin family protein\tK02440 glpF; glycerol uptake facilitator" }, { "name":"DDW44_10995 aquaporin family protein\tK02440 glpF; glycerol uptake facilitator" }, { "name":"DDW44_25070 aquaporin family protein\tK28614 aqpS; aquaglyceroporin" }, { "name":"DDW44_06005 ion transporter\tK10716 kch; voltage-gated potassium channel" }, { "name":"DDW44_11640 ion transporter\tK10716 kch; voltage-gated potassium channel" }, { "name":"DDW44_15450 Ion channel protein\tK10716 kch; voltage-gated potassium channel" }, { "name":"DDW44_22155 ammonium transporter\tK03320 amt; ammonium transporter, Amt family" }, { "name":"DDW44_30390 hypothetical protein\tK00799 GST; glutathione S-transferase [EC:2.5.1.18]" }, { "name":"DDW44_08735 VWA domain-containing protein\tK07114 yfbK; Ca-activated chloride channel homolog" }, { "name":"DDW44_17635 mscL; large conductance mechanosensitive channel protein MscL\tK03282 mscL; large conductance mechanosensitive channel" }, { "name":"DDW44_08555 mechanosensitive ion channel family protein\tK22044 ybiO; moderate conductance mechanosensitive channel" }, { "name":"DDW44_00520 transporter\tK22112 amiS; putative amide transporter protein" }, { "name":"DDW44_02370 corA; magnesium and cobalt transport protein CorA\tK03284 corA; magnesium transporter" }, { "name":"DDW44_05135 magnesium and cobalt transport protein CorA\tK03284 corA; magnesium transporter" }, { "name":"DDW44_20055 magnesium and cobalt transport protein CorA\tK03284 corA; magnesium transporter" }, { "name":"DDW44_25590 magnesium and cobalt transport protein CorA\tK03284 corA; magnesium transporter" }, { "name":"DDW44_00505 CrcB family protein\tK06199 crcB; fluoride exporter" }, { "name":"DDW44_00510 crcB; fluoride efflux transporter CrcB\tK06199 crcB; fluoride exporter" }, { "name":"DDW44_00180 DUF1211 domain-containing protein\tK24915 TMEM175; TMEM175 potassium channel family protein" }, { "name":"DDW44_01645 DUF1211 domain-containing protein\tK24915 TMEM175; TMEM175 potassium channel family protein" }, { "name":"DDW44_08000 HlyC\/CorC family transporter\tK03699 tlyC; magnesium and cobalt exporter, CNNM family" }, { "name":"DDW44_10520 hypothetical protein\tK03699 tlyC; magnesium and cobalt exporter, CNNM family" }, { "name":"DDW44_10525 hypothetical protein\tK03699 tlyC; magnesium and cobalt exporter, CNNM family" }, { "name":"DDW44_11200 hypothetical protein\tK03699 tlyC; magnesium and cobalt exporter, CNNM family" }, { "name":"DDW44_11205 hypothetical protein\tK03699 tlyC; magnesium and cobalt exporter, CNNM family" }, { "name":"DDW44_25335 hypothetical protein\tK03699 tlyC; magnesium and cobalt exporter, CNNM family" }, { "name":"DDW44_25340 hypothetical protein\tK03699 tlyC; magnesium and cobalt exporter, CNNM family" }, { "name":"DDW44_02450 L-asparagine permease\tK11738 ansP; L-asparagine permease" }, { "name":"DDW44_02125 eat; ethanolamine permease\tK16238 eat; ethanolamine permease" }, { "name":"DDW44_26750 cation transporter\tK16264 czcD; cobalt-zinc-cadmium efflux system protein" }, { "name":"DDW44_27195 cation transporter\tK16264 czcD; cobalt-zinc-cadmium efflux system protein" }, { "name":"DDW44_02800 QacE family quaternary ammonium compound efflux SMR transporter\tK03297 emrE; small multidrug resistance pump" }, { "name":"DDW44_09465 QacE family quaternary ammonium compound efflux SMR transporter\tK11741 sugE; quaternary ammonium compound-resistance protein SugE" }, { "name":"DDW44_20370 QacE family quaternary ammonium compound efflux SMR transporter\tK11741 sugE; quaternary ammonium compound-resistance protein SugE" }, { "name":"DDW44_00410 EamA family transporter\tK15268 eamA; O-acetylserine\/cysteine efflux transporter" }, { "name":"DDW44_08520 EamA family transporter\tK15269 pecM; probable blue pigment (indigoidine) exporter" }, { "name":"DDW44_10835 EamA family transporter\tK03298 TC.DME; drug\/metabolite transporter, DME family" }, { "name":"DDW44_13480 EamA family transporter\tK11939 rhtA; inner membrane transporter RhtA" }, { "name":"DDW44_17565 rarD; EamA family transporter RarD\tK05786 rarD; chloramphenicol-sensitive protein RarD" }, { "name":"DDW44_17255 YnfA family protein\tK09771 TC.SMR3; small multidrug resistance family-3 protein" }, { "name":"DDW44_02465 gluconate transporter\tK03299 TC.GNTP; gluconate:H+ symporter, GntP family" }, { "name":"DDW44_26955 high-affinity choline transporter BetT\tK02168 betT; choline\/glycine\/proline betaine transport protein" }, { "name":"DDW44_15650 ionic transporter y4hA\tK07300 chaA; Ca2+:H+ antiporter" }, { "name":"DDW44_07565 cation acetate symporter\tK14393 actP; cation\/acetate symporter" }, { "name":"DDW44_12005 cation acetate symporter\tK14393 actP; cation\/acetate symporter" }, { "name":"DDW44_23375 cation acetate symporter\tK14393 actP; cation\/acetate symporter" }, { "name":"DDW44_25535 cation acetate symporter\tK14393 actP; cation\/acetate symporter" }, { "name":"DDW44_21315 C4-dicarboxylate transporter DctA\tK11103 dctA; aerobic C4-dicarboxylate transport protein" }, { "name":"DDW44_16360 nhaA; Na+\/H+ antiporter NhaA\tK03313 nhaA; Na+:H+ antiporter, NhaA family" }, { "name":"DDW44_26695 nhaA; Na+\/H+ antiporter NhaA\tK03313 nhaA; Na+:H+ antiporter, NhaA family" }, { "name":"DDW44_03605 Na+\/H+ antiporter\tK24163 nhaK; monovalent cation\/hydrogen antiporter" }, { "name":"DDW44_20525 Na+\/H+ antiporter\tK24163 nhaK; monovalent cation\/hydrogen antiporter" }, { "name":"DDW44_17830 hypothetical protein\tK24160 NHA1; sodium\/hydrogen antiporter" }, { "name":"DDW44_12440 potassium\/proton antiporter\tK11105 cvrA; potassium\/hydrogen antiporter" }, { "name":"DDW44_28880 potassium transporter TrkA\tK07228 khtT; K+:H+ antiporter subunit KhtT" }, { "name":"DDW44_29820 potassium transporter TrkA\tK07228 khtT; K+:H+ antiporter subunit KhtT" }, { "name":"DDW44_04980 cation\/H(+) antiporter\tK26732 khtU; K+:H+ antiporter subunit KhtU" }, { "name":"DDW44_28885 cation\/H(+) antiporter\tK26732 khtU; K+:H+ antiporter subunit KhtU" }, { "name":"DDW44_29825 cation\/H(+) antiporter\tK26732 khtU; K+:H+ antiporter subunit KhtU" }, { "name":"DDW44_23650 TrkA family potassium uptake protein\tK03499 trkA; trk\/ktr system potassium uptake protein" }, { "name":"DDW44_23655 TrkA family potassium uptake protein\tK03499 trkA; trk\/ktr system potassium uptake protein" }, { "name":"DDW44_25780 uracil permease\tK24206 uacT; uric acid transporter" }, { "name":"DDW44_02755 MFS transporter\tK06901 pbuG; adenine\/guanine\/hypoxanthine permease" }, { "name":"DDW44_13570 NCS2 family permease\tK06901 pbuG; adenine\/guanine\/hypoxanthine permease" }, { "name":"DDW44_24945 MFS transporter\tK06901 pbuG; adenine\/guanine\/hypoxanthine permease" }, { "name":"DDW44_16725 ion channel protein\tK03281 clcA; chloride channel protein, CIC family" }, { "name":"DDW44_26055 chloride channel core\tK03281 clcA; chloride channel protein, CIC family" }, { "name":"DDW44_15715 sodium-independent anion transporter\tK03321 TC.SULP; sulfate permease, SulP family" }, { "name":"DDW44_30240 SulP family inorganic anion transporter\tK03321 TC.SULP; sulfate permease, SulP family" }, { "name":"DDW44_03960 hypothetical protein\tK01551 arsA; arsenite\/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]" }, { "name":"DDW44_05495 arsenic transporter\tK03893 arsB; arsenical pump membrane protein" }, { "name":"DDW44_15000 mviN; murein biosynthesis integral membrane protein MurJ\tK03980 murJ; putative peptidoglycan lipid II flippase" }, { "name":"DDW44_04525 leucine efflux protein LeuE\tK11250 leuE; leucine efflux protein" }, { "name":"DDW44_18800 leucine efflux protein LeuE\tK11250 leuE; leucine efflux protein" }, { "name":"DDW44_23045 branched-chain amino acid ABC transporter permease\tK26605 azlC; branched chain amino acid efflux pump" }, { "name":"DDW44_23050 branched-chain amino acid transporter AzlD\tK26606 azlD; branched chain amino acid efflux pump" }, { "name":"DDW44_06965 tripartite tricarboxylate transporter TctA\tK07793 tctA; putative tricarboxylic transport membrane protein" }, { "name":"DDW44_06970 hypothetical protein\tK07794 tctB; putative tricarboxylic transport membrane protein" }, { "name":"DDW44_06975 tripartite tricarboxylate transporter substrate binding protein\tK07795 tctC; putative tricarboxylic transport membrane protein" }, { "name":"DDW44_07010 AI-2E family transporter\tK20469 K20469; putative heme transporter" }, { "name":"DDW44_15625 AI-2E family transporter\tK20469 K20469; putative heme transporter" }, { "name":"DDW44_03390 hypothetical protein\tK22736 VIT; vacuolar iron transporter family protein" }, { "name":"DDW44_07600 VIT family protein\tK22736 VIT; vacuolar iron transporter family protein" }, { "name":"DDW44_09025 hypothetical protein\tK07034 GPR1; acetate uptake transporter family protein" }, { "name":"DDW44_03685 ftsW; putative lipid II flippase FtsW\tK03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"DDW44_15305 cell division protein FtsW\tK03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"DDW44_20795 cell division protein FtsW\tK03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"DDW44_05685 UPF0016 domain-containing protein\tK23541 TMEM165; Ca2+\/H+ antiporter, TMEM165\/GDT1 family" }, { "name":"DDW44_06915 hypothetical protein\tK08970 rcnA; nickel\/cobalt transporter (NicO) family protein" }, { "name":"DDW44_20455 carbon starvation protein A\tK06200 cstA; carbon starvation protein" }, { "name":"DDW44_16445 sodium-translocating pyrophosphatase\tK15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1]" }, { "name":"DDW44_00020 hypothetical protein\tK23352 gcdD; glutaconyl-CoA\/methylmalonyl-CoA decarboxylase subunit delta" }, { "name":"DDW44_17310 cytochrome C biogenesis protein ResC\tK06196 ccdA; cytochrome c-type biogenesis protein" }, { "name":"DDW44_25815 hypothetical protein\tK25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]" }, { "name":"DDW44_06195 DUF1490 domain-containing protein\tK27044 pacL1; chaperone-like protein" }, { "name":"DDW44_07225 nicotinamide mononucleotide transporter\tK03811 pnuC; nicotinamide mononucleotide transporter" }, { "name":"DDW44_11235 hypothetical protein\tK03811 pnuC; nicotinamide mononucleotide transporter" }, { "name":"DDW44_25765 uraH; hydroxyisourate hydrolase\tK07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]" }, { "name":"DDW44_02500 DUF202 domain-containing protein\tK00389 yidH; inner membrane protein YidH" } ] }, { "name":"02044 Secretion system [BR:stir02044]", "children":[ { "name":"DDW44_19530 prepilin peptidase\tK02654 pilD; leader peptidase (prepilin peptidase) \/ N-methyltransferase [EC:3.4.23.43 2.1.1.-]" }, { "name":"DDW44_19445 cpaB; Flp pilus assembly protein CpaB\tK02279 cpaB; pilus assembly protein CpaB" }, { "name":"DDW44_19450 septum formation initiator\tK02282 cpaE; pilus assembly protein CpaE" }, { "name":"DDW44_16400 pilus assembly protein CpaF\tK02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]" }, { "name":"DDW44_19470 CpaF family protein\tK02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]" }, { "name":"DDW44_16405 hypothetical protein\tK12510 tadB; tight adherence protein B" }, { "name":"DDW44_19475 hypothetical protein\tK12510 tadB; tight adherence protein B" }, { "name":"DDW44_16410 type II secretion protein F\tK12511 tadC; tight adherence protein C" }, { "name":"DDW44_19480 type II secretion system F family protein\tK12511 tadC; tight adherence protein C" }, { "name":"DDW44_19495 hypothetical protein\tK02651 flp; pilus assembly protein Flp\/PilA" }, { "name":"DDW44_03645 YggT family protein\tK02221 yggT; YggT family protein" }, { "name":"DDW44_08135 DNA-binding protein\tK02237 comEA; competence protein ComEA" }, { "name":"DDW44_08130 hypothetical protein\tK02238 comEC; competence protein ComEC" }, { "name":"DDW44_22845 eccB; type VII secretion protein EccB\tK27085 eccB; ESX secretion system ATPase EccB" }, { "name":"DDW44_22905 type VII secretion protein EccC\tK27086 eccC; ESX secretion system protein EccC" }, { "name":"DDW44_22910 eccD; type VII secretion integral membrane protein EccD\tK27087 eccD; ESX secretion system protein EccD" }, { "name":"DDW44_22835 hypothetical protein\tK27088 eccE; ESX secretion system protein EccE" }, { "name":"DDW44_22840 eccE; type VII secretion protein EccE\tK27088 eccE; ESX secretion system protein EccE" }, { "name":"DDW44_22850 mycP; type VII secretion-associated serine protease mycosin\tK14743 mycP; membrane-anchored mycosin MYCP [EC:3.4.21.-]" }, { "name":"DDW44_22875 WXG100 family type VII secretion target\tK14956 esx; ESAT-6 family protein" }, { "name":"DDW44_10050 preprotein translocase subunit SecA\tK03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]" }, { "name":"DDW44_11565 secD; protein translocase subunit SecD\tK03072 secD; preprotein translocase subunit SecD" }, { "name":"DDW44_12635 protein translocase subunit SecD\tK12257 secDF; SecD\/SecF fusion protein" }, { "name":"DDW44_17900 preprotein translocase subunit SecE\tK03073 secE; preprotein translocase subunit SecE" }, { "name":"DDW44_11560 protein translocase subunit SecF\tK03074 secF; preprotein translocase subunit SecF" }, { "name":"DDW44_02930 preprotein translocase subunit SecG\tK03075 secG; preprotein translocase subunit SecG" }, { "name":"DDW44_18100 preprotein translocase subunit SecY\tK03076 secY; preprotein translocase subunit SecY" }, { "name":"DDW44_22170 signal recognition particle protein\tK03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]" }, { "name":"DDW44_22140 signal recognition particle-docking protein FtsY\tK03110 ftsY; fused signal recognition particle receptor" }, { "name":"DDW44_11570 yajC; preprotein translocase subunit YajC\tK03210 yajC; preprotein translocase subunit YajC" }, { "name":"DDW44_09400 hypothetical protein\tK03217 yidC; YidC\/Oxa1 family membrane protein insertase" }, { "name":"DDW44_15055 membrane protein insertase YidC\tK03217 yidC; YidC\/Oxa1 family membrane protein insertase" }, { "name":"DDW44_00365 hypothetical protein\tK03116 tatA; sec-independent protein translocase protein TatA" }, { "name":"DDW44_02195 twin-arginine translocase TatA\/TatE family subunit\tK03116 tatA; sec-independent protein translocase protein TatA" }, { "name":"DDW44_13200 twin-arginine translocase TatA\/TatE family subunit\tK03116 tatA; sec-independent protein translocase protein TatA" }, { "name":"DDW44_13195 hypothetical protein\tK03117 tatB; sec-independent protein translocase protein TatB" }, { "name":"DDW44_20025 Sec-independent protein translocase TatB\tK03117 tatB; sec-independent protein translocase protein TatB" }, { "name":"DDW44_02190 tatC; twin-arginine translocase subunit TatC\tK03118 tatC; sec-independent protein translocase protein TatC" } ] }, { "name":"02042 Bacterial toxins [BR:stir02042]", "children":[ { "name":"DDW44_08000 HlyC\/CorC family transporter\tK03699 tlyC; magnesium and cobalt exporter, CNNM family" }, { "name":"DDW44_10520 hypothetical protein\tK03699 tlyC; magnesium and cobalt exporter, CNNM family" }, { "name":"DDW44_10525 hypothetical protein\tK03699 tlyC; magnesium and cobalt exporter, CNNM family" }, { "name":"DDW44_11200 hypothetical protein\tK03699 tlyC; magnesium and cobalt exporter, CNNM family" }, { "name":"DDW44_11205 hypothetical protein\tK03699 tlyC; magnesium and cobalt exporter, CNNM family" }, { "name":"DDW44_25335 hypothetical protein\tK03699 tlyC; magnesium and cobalt exporter, CNNM family" }, { "name":"DDW44_25340 hypothetical protein\tK03699 tlyC; magnesium and cobalt exporter, CNNM family" }, { "name":"DDW44_19325 DNA-binding protein\tK11068 hlyIII; hemolysin III" }, { "name":"DDW44_21595 phospholipase C, phosphocholine-specific\tK01114 plc; phospholipase C [EC:3.1.4.3]" }, { "name":"DDW44_08545 hyaluronidase\tK01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35]" }, { "name":"DDW44_24170 collagenase\tK01387 colA; microbial collagenase [EC:3.4.24.3]" } ] }, { "name":"02022 Two-component system [BR:stir02022]", "children":[ { "name":"DDW44_14110 two-component sensor histidine kinase\tK07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]" }, { "name":"DDW44_14105 DNA-binding response regulator\tK07776 regX3; two-component system, OmpR family, response regulator RegX3" }, { "name":"DDW44_23630 histidine kinase\tK07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]" }, { "name":"DDW44_23635 DNA-binding response regulator\tK07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE" }, { "name":"DDW44_06570 two-component sensor histidine kinase\tK07653 mprB; two-component system, OmpR family, sensor histidine kinase MprB [EC:2.7.13.3]" }, { "name":"DDW44_06565 DNA-binding response regulator\tK07669 mprA; two-component system, OmpR family, response regulator MprA" }, { "name":"DDW44_10085 two-component sensor histidine kinase\tK07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]" }, { "name":"DDW44_18950 two-component sensor histidine kinase\tK07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]" }, { "name":"DDW44_10090 DNA-binding response regulator\tK07670 mtrA; two-component system, OmpR family, response regulator MtrA" }, { "name":"DDW44_04310 two-component sensor histidine kinase\tK07655 prrB; two-component system, OmpR family, sensor histidine kinase PrrB [EC:2.7.13.3]" }, { "name":"DDW44_04315 DNA-binding response regulator\tK07671 prrA; two-component system, OmpR family, response regulator PrrA" }, { "name":"DDW44_14490 two-component sensor histidine kinase\tK02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]" }, { "name":"DDW44_14495 DNA-binding response regulator\tK02483 K02483; two-component system, OmpR family, response regulator" }, { "name":"DDW44_00310 DNA-binding response regulator\tK07684 narL; two-component system, NarL family, nitrate\/nitrite response regulator NarL" }, { "name":"DDW44_07430 DNA-binding response regulator\tK07684 narL; two-component system, NarL family, nitrate\/nitrite response regulator NarL" }, { "name":"DDW44_12625 sensor histidine kinase\tK07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]" }, { "name":"DDW44_14230 two-component sensor histidine kinase\tK07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]" }, { "name":"DDW44_04735 response regulator\tK07693 desR; two-component system, NarL family, response regulator DesR" }, { "name":"DDW44_14235 DNA-binding response regulator\tK07693 desR; two-component system, NarL family, response regulator DesR" }, { "name":"DDW44_15740 histidine kinase\tK07682 devS; two-component system, NarL family, sensor histidine kinase DevS [EC:2.7.13.3]" }, { "name":"DDW44_28560 histidine kinase\tK07682 devS; two-component system, NarL family, sensor histidine kinase DevS [EC:2.7.13.3]" }, { "name":"DDW44_15500 DNA-binding response regulator\tK07695 devR; two-component system, NarL family, response regulator DevR" }, { "name":"DDW44_15735 DNA-binding response regulator\tK07695 devR; two-component system, NarL family, response regulator DevR" }, { "name":"DDW44_28550 DNA-binding response regulator\tK07695 devR; two-component system, NarL family, response regulator DevR" }, { "name":"DDW44_00305 hypothetical protein\tK02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3]" }, { "name":"DDW44_23380 histidine kinase\tK02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3]" }, { "name":"DDW44_28350 sensor histidine kinase\tK02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]" }, { "name":"DDW44_28330 DNA-binding response regulator\tK02477 K02477; two-component system, LytTR family, response regulator" }, { "name":"DDW44_01010 hydrogenase maturation protein\tK19640 hypX; putative two-component system protein, hydrogenase maturation factor HypX\/HoxX" }, { "name":"DDW44_20490 ATPase\tK00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3]" }, { "name":"DDW44_03225 response regulator\tK22010 pdtaR; two-component system, response regulator PdtaR" } ] }, { "name":"02035 Bacterial motility proteins [BR:stir02035]", "children":[ { "name":"DDW44_22260 RNA polymerase sigma factor WhiG\tK02405 fliA; RNA polymerase sigma factor FliA" }, { "name":"DDW44_19530 prepilin peptidase\tK02654 pilD; leader peptidase (prepilin peptidase) \/ N-methyltransferase [EC:3.4.23.43 2.1.1.-]" }, { "name":"DDW44_19495 hypothetical protein\tK02651 flp; pilus assembly protein Flp\/PilA" }, { "name":"DDW44_19445 cpaB; Flp pilus assembly protein CpaB\tK02279 cpaB; pilus assembly protein CpaB" }, { "name":"DDW44_19450 septum formation initiator\tK02282 cpaE; pilus assembly protein CpaE" }, { "name":"DDW44_16400 pilus assembly protein CpaF\tK02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]" }, { "name":"DDW44_19470 CpaF family protein\tK02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]" } ] }, { "name":"03037 Cilium and associated proteins [BR:stir03037]", "children":[ { "name":"DDW44_05640 O-methyltransferase\tK00545 COMT; catechol O-methyltransferase [EC:2.1.1.6]" } ] }, { "name":"04812 Cytoskeleton proteins [BR:stir04812]", "children":[ { "name":"DDW44_06140 rod shape-determining protein\tK03569 mreB; rod shape-determining protein MreB and related proteins" }, { "name":"DDW44_08355 rod shape-determining protein\tK03569 mreB; rod shape-determining protein MreB and related proteins" }, { "name":"DDW44_12610 hypothetical protein\tK03569 mreB; rod shape-determining protein MreB and related proteins" }, { "name":"DDW44_03665 cell division protein FtsZ\tK03531 ftsZ; cell division protein FtsZ" }, { "name":"DDW44_07255 chromosome partitioning protein\tK03496 parA; chromosome partitioning protein" }, { "name":"DDW44_15040 cobyrinic acid a,c-diamide synthase\tK03496 parA; chromosome partitioning protein" }, { "name":"DDW44_31545 phosphopantetheine--protein transferase\tK03496 parA; chromosome partitioning protein" }, { "name":"DDW44_15035 chromosome partitioning protein ParB\tK03497 parB; ParB family transcriptional regulator, chromosome partitioning protein" }, { "name":"DDW44_30700 hypothetical protein\tK03497 parB; ParB family transcriptional regulator, chromosome partitioning protein" }, { "name":"DDW44_31540 chromosome partitioning protein ParB\tK03497 parB; ParB family transcriptional regulator, chromosome partitioning protein" } ] }, { "name":"04147 Exosome [BR:stir04147]", "children":[ { "name":"DDW44_11870 phosphopyruvate hydratase\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" }, { "name":"DDW44_02945 gap; type I glyceraldehyde-3-phosphate dehydrogenase\tK00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]" }, { "name":"DDW44_29170 glyceraldehyde-3-phosphate dehydrogenase\tK00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]" }, { "name":"DDW44_02940 pgk; phosphoglycerate kinase\tK00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]" }, { "name":"DDW44_03250 pyk; pyruvate kinase\tK00873 PK; pyruvate kinase [EC:2.7.1.40]" }, { "name":"DDW44_21275 pyk; pyruvate kinase\tK00873 PK; pyruvate kinase [EC:2.7.1.40]" }, { "name":"DDW44_15255 peptidylprolyl isomerase\tK03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]" }, { "name":"DDW44_10320 membrane dipeptidase\tK01273 DPEP; membrane dipeptidase [EC:3.4.13.19]" }, { "name":"DDW44_25635 flotillin\tK07192 FLOT; flotillin" }, { "name":"DDW44_13765 groL; chaperonin GroEL\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"DDW44_18285 groL; chaperonin GroEL\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"DDW44_05325 molecular chaperone DnaK\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"DDW44_28075 hypothetical protein\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"DDW44_02920 glucose-6-phosphate isomerase\tK01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]" }, { "name":"DDW44_19910 S9 family peptidase\tK01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]" }, { "name":"DDW44_18325 IMP dehydrogenase\tK00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]" }, { "name":"DDW44_18330 GuaB3 family IMP dehydrogenase-related protein\tK00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]" }, { "name":"DDW44_10705 tuf; elongation factor Tu\tK02358 tuf; elongation factor Tu" }, { "name":"DDW44_17975 tuf; elongation factor Tu\tK02358 tuf; elongation factor Tu" }, { "name":"DDW44_27655 hypothetical protein\tK12462 ARHGDI; Rho GDP-dissociation inhibitor" }, { "name":"DDW44_08040 histidine triad nucleotide-binding protein\tK02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]" }, { "name":"DDW44_02530 acyl-CoA synthetase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"DDW44_03975 long-chain fatty acid--CoA ligase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"DDW44_06280 long-chain fatty acid--CoA ligase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"DDW44_08095 long-chain fatty acid--CoA ligase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"DDW44_15655 acyl-CoA synthetase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"DDW44_26555 long-chain fatty acid--CoA ligase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"DDW44_11800 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_12820 acetyl-CoA C-acyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_21175 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_27075 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_29685 thiolase domain-containing protein\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"DDW44_10155 adenosylhomocysteinase\tK01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]" }, { "name":"DDW44_18105 adenylate kinase\tK00939 adk; adenylate kinase [EC:2.7.4.3]" }, { "name":"DDW44_11555 adenine phosphoribosyltransferase\tK00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]" }, { "name":"DDW44_01930 argH; argininosuccinate lyase\tK01755 argH; argininosuccinate lyase [EC:4.3.2.1]" }, { "name":"DDW44_01935 argininosuccinate synthase\tK01940 argG; argininosuccinate synthase [EC:6.3.4.5]" }, { "name":"DDW44_14875 cystathionine gamma-lyase\tK01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]" }, { "name":"DDW44_27020 N(G),N(G)-dimethylarginine dimethylaminohydrolase\tK01482 DDAH; dimethylargininase [EC:3.5.3.18]" }, { "name":"DDW44_26210 hydA; dihydropyrimidinase\tK01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]" }, { "name":"DDW44_17520 fahA; fumarylacetoacetase\tK01555 FAH; fumarylacetoacetase [EC:3.7.1.2]" }, { "name":"DDW44_26650 galK; galactokinase\tK00849 galK; galactokinase [EC:2.7.1.6]" }, { "name":"DDW44_21345 1,4-alpha-glucan branching enzyme\tK00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]" }, { "name":"DDW44_02330 glpK; glycerol kinase\tK00864 glpK; glycerol kinase [EC:2.7.1.30]" }, { "name":"DDW44_11000 glpK; glycerol kinase\tK00864 glpK; glycerol kinase [EC:2.7.1.30]" }, { "name":"DDW44_02115 glutamine synthetase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"DDW44_04295 glnA; type I glutamate--ammonia ligase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"DDW44_04360 glutamine synthetase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"DDW44_04460 glutamine synthetase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"DDW44_17185 porphobilinogen synthase\tK01698 hemB; porphobilinogen synthase [EC:4.2.1.24]" }, { "name":"DDW44_09665 hppD; 4-hydroxyphenylpyruvate dioxygenase\tK00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]" }, { "name":"DDW44_26525 4a-hydroxytetrahydrobiopterin dehydratase\tK01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]" }, { "name":"DDW44_21645 phosphoglycerate dehydrogenase\tK00058 serA; D-3-phosphoglycerate dehydrogenase \/ 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]" }, { "name":"DDW44_18535 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase\/IMP cyclohydrolase PurH\tK00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase \/ IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]" }, { "name":"DDW44_05640 O-methyltransferase\tK00545 COMT; catechol O-methyltransferase [EC:2.1.1.6]" }, { "name":"DDW44_04205 lpdA; dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" }, { "name":"DDW44_12840 electron transfer flavoprotein subunit alpha\tK03522 fixB; electron transfer flavoprotein alpha subunit" }, { "name":"DDW44_29860 electron transfer flavoprotein subunit alpha\/FixB family protein\tK03522 fixB; electron transfer flavoprotein alpha subunit" }, { "name":"DDW44_16545 glutamate dehydrogenase\tK00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]" }, { "name":"DDW44_27355 glutamate dehydrogenase\tK00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]" }, { "name":"DDW44_02885 glucose-6-phosphate dehydrogenase\tK00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]" }, { "name":"DDW44_24675 zwf; glucose-6-phosphate dehydrogenase\tK00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]" }, { "name":"DDW44_02935 triose-phosphate isomerase\tK01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]" }, { "name":"DDW44_06385 phosphoglyceromutase\tK01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]" } ] }, { "name":"02048 Prokaryotic defense system [BR:stir02048]", "children":[ { "name":"DDW44_05825 type I-E CRISPR-associated endonuclease Cas1\tK15342 cas1; CRISP-associated protein Cas1" }, { "name":"DDW44_05830 cas2e; type I-E CRISPR-associated endoribonuclease Cas2\tK09951 cas2; CRISPR-associated protein Cas2" }, { "name":"DDW44_05795 cas3; CRISPR-associated helicase Cas3'\tK07012 cas3; CRISPR-associated endonuclease\/helicase Cas3 [EC:3.1.-.- 5.6.2.4]" }, { "name":"DDW44_05800 casA; type I-E CRISPR-associated protein Cse1\/CasA\tK19123 casA; CRISPR system Cascade subunit CasA" }, { "name":"DDW44_05805 casB; type I-E CRISPR-associated protein Cse2\/CasB\tK19046 casB; CRISPR system Cascade subunit CasB" }, { "name":"DDW44_05810 cas7e; type I-E CRISPR-associated protein Cas7\/Cse4\/CasC\tK19124 casC; CRISPR system Cascade subunit CasC" }, { "name":"DDW44_05815 cas5e; type I-E CRISPR-associated protein Cas5\/CasD\tK19125 casD; CRISPR system Cascade subunit CasD" }, { "name":"DDW44_05820 cas6e; type I-E CRISPR-associated protein Cas6\/Cse3\/CasE\tK19126 casE; CRISPR system Cascade subunit CasE" }, { "name":"DDW44_28045 restriction endonuclease subunit R\tK01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]" }, { "name":"DDW44_28050 type I restriction endonuclease subunit S\tK01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]" }, { "name":"DDW44_28055 restriction endonuclease subunit M\tK03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]" }, { "name":"DDW44_13965 HNH endonuclease\tK07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]" }, { "name":"DDW44_16050 restriction endonuclease\tK07448 mrr; restriction system protein" }, { "name":"DDW44_22605 restriction endonuclease\tK07448 mrr; restriction system protein" }, { "name":"DDW44_00045 antitoxin MazE7\tK26987 mazE7; antitoxin MazE7" }, { "name":"DDW44_05390 type II toxin-antitoxin system RelE\/ParE family toxin\tK06218 relE; mRNA interferase RelE\/StbE" }, { "name":"DDW44_09690 type II toxin-antitoxin system death-on-curing family toxin\tK07341 doc; death on curing protein" }, { "name":"DDW44_23675 toxin\tK07341 doc; death on curing protein" }, { "name":"DDW44_04645 VapC toxin family PIN domain ribonuclease\tK28147 vapC2S; ribonuclease VapC2\/6\/11\/15\/17\/18\/21\/51 [EC:3.1.-.-]" }, { "name":"DDW44_06460 PIN domain-containing protein\tK28147 vapC2S; ribonuclease VapC2\/6\/11\/15\/17\/18\/21\/51 [EC:3.1.-.-]" }, { "name":"DDW44_04640 type II toxin-antitoxin system VapB family antitoxin\tK28152 vapB6S; antitoxin VapB6\/11\/15\/18\/21" }, { "name":"DDW44_06465 type II toxin-antitoxin system VapB family antitoxin\tK28152 vapB6S; antitoxin VapB6\/11\/15\/18\/21" }, { "name":"DDW44_08670 prevent-host-death protein\tK28150 vapB4_5; antitoxin VapB4\/5" }, { "name":"DDW44_03665 cell division protein FtsZ\tK03531 ftsZ; cell division protein FtsZ" }, { "name":"DDW44_06140 rod shape-determining protein\tK03569 mreB; rod shape-determining protein MreB and related proteins" }, { "name":"DDW44_08355 rod shape-determining protein\tK03569 mreB; rod shape-determining protein MreB and related proteins" }, { "name":"DDW44_12610 hypothetical protein\tK03569 mreB; rod shape-determining protein MreB and related proteins" }, { "name":"DDW44_21950 glutamate--tRNA ligase\tK01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]" }, { "name":"DDW44_04085 cysteine desulfurase\tK04487 iscS; cysteine desulfurase [EC:2.8.1.7]" }, { "name":"DDW44_21525 cysteine desulfurase\tK04487 iscS; cysteine desulfurase [EC:2.8.1.7]" } ] }, { "name":"04030 G protein-coupled receptors" }, { "name":"04050 Cytokine receptors" }, { "name":"04054 Pattern recognition receptors" }, { "name":"03310 Nuclear receptors" }, { "name":"04040 Ion channels" }, { "name":"04031 GTP-binding proteins" }, { "name":"04052 Cytokines and neuropeptides" }, { "name":"04515 Cell adhesion molecules" }, { "name":"04090 CD molecules [BR:stir04090]", "children":[ { "name":"DDW44_19910 S9 family peptidase\tK01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]" } ] }, { "name":"01504 Antimicrobial resistance genes [BR:stir01504]", "children":[ { "name":"DDW44_21825 GNAT family N-acetyltransferase\tK17840 aac2-I; aminoglycoside 2'-N-acetyltransferase I [EC:2.3.1.59]" }, { "name":"DDW44_07035 AAC(3) family N-acetyltransferase\tK00662 aacC; aminoglycoside 3-N-acetyltransferase [EC:2.3.1.81]" }, { "name":"DDW44_10285 hydroxyurea phosphotransferase\tK12570 aphD; streptomycin 6-kinase [EC:2.7.1.72]" }, { "name":"DDW44_22740 kinase\tK04343 strB; streptomycin 6-kinase [EC:2.7.1.72]" }, { "name":"DDW44_13685 MFS transporter\tK18553 cmlR; MFS transporter, DHA1 family, chloramphenicol resistance protein" }, { "name":"DDW44_15190 MFS transporter\tK18553 cmlR; MFS transporter, DHA1 family, chloramphenicol resistance protein" }, { "name":"DDW44_01910 MFS transporter\tK08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein" }, { "name":"DDW44_07080 MFS transporter\tK08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein" }, { "name":"DDW44_31250 MFS transporter\tK08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein" }, { "name":"DDW44_23910 rox; rifampin monooxygenase\tK21267 iri; rifampicin monooxygenase [EC:1.14.13.211]" }, { "name":"DDW44_01450 M56 family peptidase\tK02172 blaR1; bla regulator protein blaR1" }, { "name":"DDW44_23115 class A beta-lactamase\tK17836 penP; beta-lactamase class A [EC:3.5.2.6]" }, { "name":"DDW44_04505 hypothetical protein\tK18353 vanJ; vancomycin resistance protein VanJ" }, { "name":"DDW44_10980 D-alanyl-D-alanine dipeptidase\tK08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]" }, { "name":"DDW44_01915 TetR\/AcrR family transcriptional regulator\tK18294 nfxB; TetR\/AcrR family transcriptional regulator, mexCD-oprJ operon repressor" } ] }, { "name":"00535 Proteoglycans" }, { "name":"00536 Glycosaminoglycan binding proteins [BR:stir00536]", "children":[ { "name":"DDW44_08545 hyaluronidase\tK01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35]" } ] }, { "name":"00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:stir00537]", "children":[ { "name":"DDW44_10320 membrane dipeptidase\tK01273 DPEP; membrane dipeptidase [EC:3.4.13.19]" }, { "name":"DDW44_08545 hyaluronidase\tK01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35]" } ] }, { "name":"04091 Lectins" }, { "name":"04990 Domain-containing proteins not elsewhere classified" } ] }, { "name":"09185 Viral protein families", "children":[ { "name":"03200 Viral proteins" }, { "name":"03210 Viral fusion proteins" } ] }, { "name":"09184 RNA family", "children":[ { "name":"03100 Non-coding RNAs [BR:stir03100]", "children":[ { "name":"DDW44_08165 tRNA-Ala\tK14218 tRNA-Ala; tRNA Ala" }, { "name":"DDW44_08180 tRNA-Ala\tK14218 tRNA-Ala; tRNA Ala" }, { "name":"DDW44_12395 tRNA-Ala\tK14218 tRNA-Ala; tRNA Ala" }, { "name":"DDW44_15150 tRNA-Ala\tK14218 tRNA-Ala; tRNA Ala" }, { "name":"DDW44_08665 tRNA-Arg\tK14219 tRNA-Arg; tRNA Arg" }, { "name":"DDW44_12600 tRNA-Arg\tK14219 tRNA-Arg; tRNA Arg" }, { "name":"DDW44_14540 tRNA-Arg\tK14219 tRNA-Arg; tRNA Arg" }, { "name":"DDW44_20935 tRNA-Arg\tK14219 tRNA-Arg; tRNA Arg" }, { "name":"DDW44_06335 tRNA-Asn\tK14220 tRNA-Asn; tRNA Asn" }, { "name":"DDW44_06340 tRNA-Asn\tK14220 tRNA-Asn; tRNA Asn" }, { "name":"DDW44_06870 tRNA-Asp\tK14221 tRNA-Asp; tRNA Asp" }, { "name":"DDW44_06890 tRNA-Asp\tK14221 tRNA-Asp; tRNA Asp" }, { "name":"DDW44_14130 tRNA-Asp\tK14221 tRNA-Asp; tRNA Asp" }, { "name":"DDW44_01785 tRNA-Cys\tK14222 tRNA-Cys; tRNA Cys" }, { "name":"DDW44_12050 tRNA-Gln\tK14223 tRNA-Gln; tRNA Gln" }, { "name":"DDW44_21960 tRNA-Gln\tK14223 tRNA-Gln; tRNA Gln" }, { "name":"DDW44_21975 tRNA-Gln\tK14223 tRNA-Gln; tRNA Gln" }, { "name":"DDW44_06865 tRNA-Glu\tK14224 tRNA-Glu; tRNA Glu" }, { "name":"DDW44_21965 tRNA-Glu\tK14224 tRNA-Glu; tRNA Glu" }, { "name":"DDW44_21970 tRNA-Glu\tK14224 tRNA-Glu; tRNA Glu" }, { "name":"DDW44_21980 tRNA-Glu\tK14224 tRNA-Glu; tRNA Glu" }, { "name":"DDW44_01780 tRNA-Gly\tK14225 tRNA-Gly; tRNA Gly" }, { "name":"DDW44_05285 tRNA-Gly\tK14225 tRNA-Gly; tRNA Gly" }, { "name":"DDW44_08410 tRNA-Gly\tK14225 tRNA-Gly; tRNA Gly" }, { "name":"DDW44_14210 tRNA-Gly\tK14225 tRNA-Gly; tRNA Gly" }, { "name":"DDW44_14215 tRNA-Gly\tK14225 tRNA-Gly; tRNA Gly" }, { "name":"DDW44_14240 tRNA-Gly\tK14225 tRNA-Gly; tRNA Gly" }, { "name":"DDW44_09050 tRNA-His\tK14226 tRNA-His; tRNA His" }, { "name":"DDW44_15125 tRNA-Ile\tK14227 tRNA-Ile; tRNA Ile" }, { "name":"DDW44_02420 tRNA-Leu\tK14228 tRNA-Leu; tRNA Leu" }, { "name":"DDW44_03230 tRNA-Leu\tK14228 tRNA-Leu; tRNA Leu" }, { "name":"DDW44_09505 tRNA-Leu\tK14228 tRNA-Leu; tRNA Leu" }, { "name":"DDW44_11830 tRNA-Leu\tK14228 tRNA-Leu; tRNA Leu" }, { "name":"DDW44_15325 tRNA-Leu\tK14228 tRNA-Leu; tRNA Leu" }, { "name":"DDW44_26590 tRNA-Leu\tK14228 tRNA-Leu; tRNA Leu" }, { "name":"DDW44_06840 tRNA-Lys\tK14229 tRNA-Lys; tRNA Lys" }, { "name":"DDW44_09170 tRNA-Lys\tK14229 tRNA-Lys; tRNA Lys" }, { "name":"DDW44_09240 tRNA-Lys\tK14229 tRNA-Lys; tRNA Lys" }, { "name":"DDW44_09265 tRNA-Lys\tK14229 tRNA-Lys; tRNA Lys" }, { "name":"DDW44_06330 tRNA-Met\tK14230 tRNA-Met; tRNA Met" }, { "name":"DDW44_06800 tRNA-Met\tK14230 tRNA-Met; tRNA Met" }, { "name":"DDW44_17860 tRNA-Met\tK14230 tRNA-Met; tRNA Met" }, { "name":"DDW44_20310 tRNA-Met\tK14230 tRNA-Met; tRNA Met" }, { "name":"DDW44_20340 tRNA-Met\tK14230 tRNA-Met; tRNA Met" }, { "name":"DDW44_06875 tRNA-Phe\tK14231 tRNA-Phe; tRNA Phe" }, { "name":"DDW44_06895 tRNA-Phe\tK14231 tRNA-Phe; tRNA Phe" }, { "name":"DDW44_08405 tRNA-Pro\tK14232 tRNA-Pro; tRNA Pro" }, { "name":"DDW44_16250 tRNA-Pro\tK14232 tRNA-Pro; tRNA Pro" }, { "name":"DDW44_27475 tRNA-Pro\tK14232 tRNA-Pro; tRNA Pro" }, { "name":"DDW44_27635 tRNA-Pro\tK14232 tRNA-Pro; tRNA Pro" }, { "name":"DDW44_14280 tRNA-Ser\tK14233 tRNA-Ser; tRNA Ser" }, { "name":"DDW44_14330 tRNA-Ser\tK14233 tRNA-Ser; tRNA Ser" }, { "name":"DDW44_14440 tRNA-Ser\tK14233 tRNA-Ser; tRNA Ser" }, { "name":"DDW44_14545 tRNA-Ser\tK14233 tRNA-Ser; tRNA Ser" }, { "name":"DDW44_14615 tRNA-Ser\tK14233 tRNA-Ser; tRNA Ser" }, { "name":"DDW44_14735 tRNA-Ser\tK14233 tRNA-Ser; tRNA Ser" }, { "name":"DDW44_14035 tRNA-Thr\tK14234 tRNA-Thr; tRNA Thr" }, { "name":"DDW44_16485 tRNA-Thr\tK14234 tRNA-Thr; tRNA Thr" }, { "name":"DDW44_17855 tRNA-Thr\tK14234 tRNA-Thr; tRNA Thr" }, { "name":"DDW44_22970 tRNA-Thr\tK14234 tRNA-Thr; tRNA Thr" }, { "name":"DDW44_17895 tRNA-Trp\tK14235 tRNA-Trp; tRNA Trp" }, { "name":"DDW44_17675 tRNA-Tyr\tK14236 tRNA-Tyr; tRNA Tyr" }, { "name":"DDW44_01735 tRNA-Val\tK14237 tRNA-Val; tRNA Val" }, { "name":"DDW44_01790 tRNA-Val\tK14237 tRNA-Val; tRNA Val" }, { "name":"DDW44_01795 tRNA-Val\tK14237 tRNA-Val; tRNA Val" }, { "name":"DDW44_01800 tRNA-Val\tK14237 tRNA-Val; tRNA Val" }, { "name":"DDW44_05930 tRNA-Val\tK14237 tRNA-Val; tRNA Val" }, { "name":"DDW44_11665 tRNA-Val\tK14237 tRNA-Val; tRNA Val" }, { "name":"DDW44_06710 16S ribosomal RNA\tK01977 16SrRNA; 16S ribosomal RNA" }, { "name":"DDW44_07370 16S ribosomal RNA\tK01977 16SrRNA; 16S ribosomal RNA" }, { "name":"DDW44_10135 16S ribosomal RNA\tK01977 16SrRNA; 16S ribosomal RNA" }, { "name":"DDW44_10945 16S ribosomal RNA\tK01977 16SrRNA; 16S ribosomal RNA" }, { "name":"DDW44_17090 16S ribosomal RNA\tK01977 16SrRNA; 16S ribosomal RNA" }, { "name":"DDW44_06705 23S ribosomal RNA\tK01980 23SrRNA; 23S ribosomal RNA" }, { "name":"DDW44_07365 23S ribosomal RNA\tK01980 23SrRNA; 23S ribosomal RNA" }, { "name":"DDW44_10130 23S ribosomal RNA\tK01980 23SrRNA; 23S ribosomal RNA" }, { "name":"DDW44_10940 23S ribosomal RNA\tK01980 23SrRNA; 23S ribosomal RNA" }, { "name":"DDW44_17095 23S ribosomal RNA\tK01980 23SrRNA; 23S ribosomal RNA" }, { "name":"DDW44_06700 rrf; 5S ribosomal RNA\tK01985 5SrRNA; 5S ribosomal RNA" }, { "name":"DDW44_07360 rrf; 5S ribosomal RNA\tK01985 5SrRNA; 5S ribosomal RNA" }, { "name":"DDW44_10125 rrf; 5S ribosomal RNA\tK01985 5SrRNA; 5S ribosomal RNA" }, { "name":"DDW44_10935 rrf; 5S ribosomal RNA\tK01985 5SrRNA; 5S ribosomal RNA" }, { "name":"DDW44_17100 rrf; 5S ribosomal RNA\tK01985 5SrRNA; 5S ribosomal RNA" }, { "name":"DDW44_22965 rrf; 5S ribosomal RNA\tK01985 5SrRNA; 5S ribosomal RNA" }, { "name":"DDW44_04680 rnpB; RNase P RNA component class A\tK01978 rnpB; RNase P catalytic RNA component" }, { "name":"DDW44_09845 ssrA; transfer-messenger RNA\tK15035 ssrA; transfer-messenger RNA" }, { "name":"DDW44_14275 ffs; signal recognition particle sRNA small type\tK01983 ffs; signal recognition particle 4.5S RNA" }, { "name":"DDW44_14325 ffs; signal recognition particle sRNA small type\tK01983 ffs; signal recognition particle 4.5S RNA" } ] } ] } ] }, { "name":"09190 Not Included in Pathway or Brite", "children":[ { "name":"09191 Unclassified: metabolism", "children":[ { "name":"99980 Enzymes with EC numbers", "children":[ { "name":"DDW44_02445 S-(hydroxymethyl)mycothiol dehydrogenase\tK00153 E1.1.1.306; S-(hydroxymethyl)mycothiol dehydrogenase [EC:1.1.1.306]" }, { "name":"DDW44_18645 decaprenylphospho-beta-D-erythro-pentofuranosid-2-ulose 2-reductase\tK16652 dprE2; decaprenylphospho-beta-D-erythro-pentofuranosid-2-ulose 2-reductase [EC:1.1.1.333]" }, { "name":"DDW44_26550 oxidoreductase\tK06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]" }, { "name":"DDW44_00200 dehydrogenase\tK22320 oleD; 2-alkyl-3-oxoalkanoate reductase [EC:1.1.1.412]" }, { "name":"DDW44_31510 short-chain dehydrogenase\tK22322 barS1; A-factor type gamma-butyrolactone 1'-reductase (1S-forming) [EC:1.1.1.413]" }, { "name":"DDW44_19545 L-glyceraldehyde 3-phosphate reductase\tK19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-]" }, { "name":"DDW44_23570 FAD-linked oxidoreductase\tK05888 K05888; L-gulono-1,4-lactone dehydrogenase [EC:1.1.2.-]" }, { "name":"DDW44_18650 decaprenylphosphoryl-beta-D-ribose oxidase\tK16653 dprE1; decaprenylphospho-beta-D-ribofuranose 2-oxidase [EC:1.1.98.3]" }, { "name":"DDW44_24935 (2Fe-2S)-binding protein\tK03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3]" }, { "name":"DDW44_29435 (2Fe-2S)-binding protein\tK03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3]" }, { "name":"DDW44_29425 carbon monoxide dehydrogenase\tK03519 coxM; aerobic carbon-monoxide dehydrogenase medium subunit [EC:1.2.5.3]" }, { "name":"DDW44_29430 carbon monoxide dehydrogenase\tK03520 coxL; aerobic carbon-monoxide dehydrogenase large subunit [EC:1.2.5.3]" }, { "name":"DDW44_15820 fadH; NADPH-dependent 2,4-dienoyl-CoA reductase\tK00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34]" }, { "name":"DDW44_17440 geranylgeranyl reductase family protein\tK21401 menJ; menaquinone-9 beta-reductase [EC:1.3.99.38]" }, { "name":"DDW44_27435 acyl-CoA dehydrogenase\tK18244 mmgC; acyl-CoA dehydrogenase [EC:1.3.99.-]" }, { "name":"DDW44_04540 npdG; NADPH-dependent F420 reductase\tK06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40]" }, { "name":"DDW44_29785 NADP oxidoreductase\tK06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40]" }, { "name":"DDW44_24270 6-phosphogluconate dehydrogenase\tK19809 RIR; 2-methyl-1-pyrroline reductase [EC:1.5.1.48]" }, { "name":"DDW44_19020 NAD(P)H-quinone dehydrogenase\tK23842 lpdA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]" }, { "name":"DDW44_29035 alcohol dehydrogenase\tK00344 qor; NADPH:quinone reductase [EC:1.6.5.5]" }, { "name":"DDW44_19150 peptide-methionine (S)-S-oxide reductase\tK07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]" }, { "name":"DDW44_24020 msrA; peptide-methionine (S)-S-oxide reductase\tK07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]" }, { "name":"DDW44_24545 msrB; peptide-methionine (R)-S-oxide reductase\tK07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]" }, { "name":"DDW44_14715 deferrochelatase\/peroxidase EfeB\tK15733 E1.11.1.19; dye decolorizing peroxidase [EC:1.11.1.19]" }, { "name":"DDW44_09450 thioredoxin-dependent thiol peroxidase\tK03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]" }, { "name":"DDW44_01490 Ohr subfamily peroxiredoxin\tK04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]" }, { "name":"DDW44_06115 organic hydroperoxide resistance protein\tK04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]" }, { "name":"DDW44_24520 OsmC family peroxiredoxin\tK04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]" }, { "name":"DDW44_19570 alkyl hydroperoxide reductase\tK04756 ahpD; lipoyl-dependent peroxiredoxin subunit D [EC:1.11.1.28]" }, { "name":"DDW44_19575 peroxiredoxin\tK24126 ahpC; lipoyl-dependent peroxiredoxin subunit C [EC:1.11.1.28]" }, { "name":"DDW44_05990 peroxiredoxin\tK24120 ahpE; mycoredoxin-dependent peroxiredoxin [EC:1.11.1.29]" }, { "name":"DDW44_06070 pirin family protein\tK06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]" }, { "name":"DDW44_15610 pirin\tK06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]" }, { "name":"DDW44_28525 pirin\tK06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]" }, { "name":"DDW44_26540 cysteine dioxygenase\tK24700 mdo; 3-mercaptopropionate dioxygenase [EC:1.13.11.91]" }, { "name":"DDW44_31090 taurine dioxygenase\tK22303 atsK; alkyl sulfatase [EC:1.14.11.77]" }, { "name":"DDW44_26805 hemin transporter\tK05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17]" }, { "name":"DDW44_05645 antibiotic biosynthesis monooxygenase\tK21481 mhuD; heme oxygenase (mycobilin-producing) [EC:1.14.99.57]" }, { "name":"DDW44_20600 sodN; superoxide dismutase, Ni\tK00518 sodN; nickel superoxide dismutase [EC:1.15.1.1]" }, { "name":"DDW44_01480 NADP oxidoreductase\tK00528 fpr; ferredoxin\/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]" }, { "name":"DDW44_29740 pyridine nucleotide-disulfide oxidoreductase\tK00528 fpr; ferredoxin\/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]" }, { "name":"DDW44_12760 NAD(P)\/FAD-dependent oxidoreductase\tK21567 fnr; ferredoxin\/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]" }, { "name":"DDW44_04345 arsenate reductase\tK00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]" }, { "name":"DDW44_20215 glutaredoxin-like protein\tK18917 mrx1; mycoredoxin [EC:1.20.4.3]" }, { "name":"DDW44_25080 arsenate reductase ArsC\tK03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]" }, { "name":"DDW44_23980 radical SAM protein\tK06937 E1.21.98.5; tetraether lipid synthase [EC:1.21.98.5]" }, { "name":"DDW44_30845 fxlM; methyltransferase, FxLD system\tK00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]" }, { "name":"DDW44_01385 methyltransferase domain-containing protein\tK00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]" }, { "name":"DDW44_11845 SAM-dependent methyltransferase\tK00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]" }, { "name":"DDW44_12100 trans-aconitate 2-methyltransferase\tK00598 tam; trans-aconitate 2-methyltransferase [EC:2.1.1.144]" }, { "name":"DDW44_31410 methyltransferase domain-containing protein\tK21457 mppJ; phenylpyruvate C(3)-methyltransferase [EC:2.1.1.281]" }, { "name":"DDW44_04770 class I SAM-dependent methyltransferase\tK24288 meT1; MMP 1-O-methyltransferase [EC:2.1.1.365]" }, { "name":"DDW44_21795 carbamoyltransferase\tK00612 nodU; carbamoyltransferase [EC:2.1.3.-]" }, { "name":"DDW44_16660 maltose acetyltransferase\tK00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]" }, { "name":"DDW44_08120 acetyltransferase\tK00675 nhoA; N-hydroxyarylamine O-acetyltransferase [EC:2.3.1.118]" }, { "name":"DDW44_06585 mshD; mycothiol synthase\tK15520 mshD; mycothiol synthase [EC:2.3.1.189]" }, { "name":"DDW44_29550 GNAT family N-acetyltransferase\tK15520 mshD; mycothiol synthase [EC:2.3.1.189]" }, { "name":"DDW44_31155 GNAT family N-acetyltransferase\tK15520 mshD; mycothiol synthase [EC:2.3.1.189]" }, { "name":"DDW44_10745 lnt; apolipoprotein N-acyltransferase\tK03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]" }, { "name":"DDW44_30045 lnt; apolipoprotein N-acyltransferase\tK03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]" }, { "name":"DDW44_16615 gamma-butyrolactone biosynthesis protein\tK22463 afsA; 2-oxo-3-(phosphooxy)propyl 3-oxoalkanoate synthase [EC:2.3.1.277]" }, { "name":"DDW44_31525 transcriptional regulator\tK22463 afsA; 2-oxo-3-(phosphooxy)propyl 3-oxoalkanoate synthase [EC:2.3.1.277]" }, { "name":"DDW44_11955 GNAT family N-acetyltransferase\tK03826 yiaB_C; [protein]-L-lysine N-acetyltransferase [EC:2.3.1.338]" }, { "name":"DDW44_25800 hypothetical protein\tK22757 QCT; glutaminyl-peptide cyclotransferase [EC:2.3.2.5]" }, { "name":"DDW44_28465 GNAT family N-acetyltransferase\tK22310 olsB; L-ornithine Nalpha-acyltransferase [EC:2.3.2.30]" }, { "name":"DDW44_06400 mshA; D-inositol-3-phosphate glycosyltransferase\tK15521 mshA; D-inositol-3-phosphate glycosyltransferase [EC:2.4.1.250]" }, { "name":"DDW44_03425 prolipoprotein diacylglyceryl transferase\tK13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]" }, { "name":"DDW44_01960 thiamine biosynthesis protein\tK03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]" }, { "name":"DDW44_22070 dihydroxyacetone kinase\tK07030 fakA; fatty acid kinase [EC:2.7.2.18]" }, { "name":"DDW44_04440 bifunctional glutamine-synthetase adenylyltransferase\/deadenyltransferase\tK00982 glnE; [glutamine synthetase] adenylyltransferase \/ [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]" }, { "name":"DDW44_16995 DNA integrity scanning protein DisA\tK07067 disA; diadenylate cyclase [EC:2.7.7.85]" }, { "name":"DDW44_03935 esterase\tK03928 yvaK; carboxylesterase [EC:3.1.1.1]" }, { "name":"DDW44_26255 O-acetyl-ADP-ribose deacetylase\tK23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106]" }, { "name":"DDW44_08630 thioesterase\tK07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]" }, { "name":"DDW44_27285 protein-tyrosine-phosphatase\tK01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]" }, { "name":"DDW44_08185 histidine phosphatase family protein\tK22306 gpgP; glucosyl-3-phosphoglycerate phosphatase [EC:3.1.3.85]" }, { "name":"DDW44_20075 phosphatase\tK07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]" }, { "name":"DDW44_18655 hypothetical protein\tK27842 E3.1.3.111; decaprenylphosphoryl-5-phosphoribose phosphatase [EC:3.1.3.111]" }, { "name":"DDW44_07475 phosphohistidine phosphatase\tK08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]" }, { "name":"DDW44_28940 phosphohistidine phosphatase\tK08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]" }, { "name":"DDW44_12185 AraC family transcriptional regulator\tK03424 tatD; TatD DNase family protein [EC:3.1.21.-]" }, { "name":"DDW44_21120 endonuclease NucS\tK07503 nucS; endonuclease [EC:3.1.-.-]" }, { "name":"DDW44_02540 DUF1343 domain-containing protein\tK28880 namZ; peptidoglycan beta-N-acetylmuramidase [EC:3.2.1.92]" }, { "name":"DDW44_04825 prenyltransferase\tK27194 mmpH; MMP endo-(1,4)-3-O-methyl-alpha-D-mannosidase [EC:3.2.1.221]" }, { "name":"DDW44_03485 serine hydrolase\tK01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]" }, { "name":"DDW44_05620 serine hydrolase\tK01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]" }, { "name":"DDW44_01680 def; peptide deformylase\tK01462 PDF; peptide deformylase [EC:3.5.1.88]" }, { "name":"DDW44_20425 def; peptide deformylase\tK01462 PDF; peptide deformylase [EC:3.5.1.88]" }, { "name":"DDW44_19920 mshB; N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase\tK15525 mshB; N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase [EC:3.5.1.103]" }, { "name":"DDW44_19205 mca; mycothiol conjugate amidase Mca\tK18455 mca; mycothiol S-conjugate amidase [EC:3.5.1.115]" }, { "name":"DDW44_21735 carbon-nitrogen hydrolase family protein\tK11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]" }, { "name":"DDW44_21745 carbon-nitrogen hydrolase family protein\tK11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]" }, { "name":"DDW44_25775 8-oxoguanine deaminase\tK18456 E3.5.4.32; 8-oxoguanine deaminase [EC:3.5.4.32]" }, { "name":"DDW44_03745 MoxR family ATPase\tK03924 moxR; MoxR-like ATPase [EC:3.6.3.-]" }, { "name":"DDW44_10115 AAA family ATPase\tK03924 moxR; MoxR-like ATPase [EC:3.6.3.-]" }, { "name":"DDW44_18220 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase\/NAD(P)H-hydrate epimerase\tK23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase \/ NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]" }, { "name":"DDW44_29670 crotonase\/enoyl-CoA hydratase family protein\tK28233 echA19; 3-oxochol-4,22-dien-24-oyl-CoA hydratase (R-form) [EC:4.2.1.-]" }, { "name":"DDW44_25060 terpene synthase\tK23044 sds; selina-4(15),7(11)-diene synthase [EC:4.2.3.181]" }, { "name":"DDW44_01410 peptidylprolyl isomerase\tK01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]" }, { "name":"DDW44_02220 peptidylprolyl isomerase\tK01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]" }, { "name":"DDW44_21240 methylmalonyl-CoA mutase\tK25820 icmA; isobutyryl-CoA mutase large subunit [EC:5.4.99.13]" }, { "name":"DDW44_18455 methylmalonyl-CoA mutase\tK25821 icmB; isobutyryl-CoA mutase small subunit [EC:5.4.99.13]" }, { "name":"DDW44_00195 hypothetical protein\tK22319 oleC; olefin beta-lactone synthetase [EC:6.1.3.1]" }, { "name":"DDW44_02350 cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase\tK15526 mshC; L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [EC:6.3.1.13]" }, { "name":"DDW44_13465 acetyl-CoA carboxylase carboxyltransferase subunit\tK01970 accD2; acyl-CoA carboxylase subunit beta [EC:6.4.1.-]" }, { "name":"DDW44_06150 acetyl-CoA carboxylase\tK04104 accD3; acyl-CoA carboxylase subunit beta [EC:6.4.1.-]" }, { "name":"DDW44_13460 acety-l\/propionyl-CoA carboxylase subunit alpha\tK27596 accA2; acyl-CoA carboxylase subunit alpha [EC:6.4.1.-]" }, { "name":"DDW44_13210 magnesium-translocating P-type ATPase\tK01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14]" }, { "name":"DDW44_06190 copper-translocating P-type ATPase\tK12950 ctpC; manganese-transporting P-type ATPase C [EC:7.2.2.22]" }, { "name":"DDW44_13580 magnesium-transporting ATPase\tK12952 ctpE; cation-transporting P-type ATPase E [EC:7.2.2.-]" }, { "name":"DDW44_29830 carbonate dehydratase\tK12953 ctpF; cation-transporting P-type ATPase F [EC:7.2.2.-]" } ] }, { "name":"99981 Carbohydrate metabolism", "children":[ { "name":"DDW44_17115 acetoin utilization protein AcuC\tK04768 acuC; acetoin utilization protein AcuC" }, { "name":"DDW44_30195 (Fe-S)-binding protein\tK18928 lldE; L-lactate dehydrogenase complex protein LldE" }, { "name":"DDW44_30190 (4Fe-4S)-binding protein\tK18929 lldF; L-lactate dehydrogenase complex protein LldF" }, { "name":"DDW44_30185 lactate utilization protein C\tK00782 lldG; L-lactate dehydrogenase complex protein LldG" } ] }, { "name":"99982 Energy metabolism", "children":[ { "name":"DDW44_26560 formate dehydrogenase accessory sulfurtransferase FdhD\tK02379 fdhD; FdhD protein" }, { "name":"DDW44_00265 ferredoxin\tK05337 fer; ferredoxin" }, { "name":"DDW44_02270 ferredoxin\tK05337 fer; ferredoxin" }, { "name":"DDW44_04845 ferredoxin\tK05337 fer; ferredoxin" }, { "name":"DDW44_21705 ferredoxin\tK05337 fer; ferredoxin" }, { "name":"DDW44_26165 ferredoxin\tK05337 fer; ferredoxin" }, { "name":"DDW44_02810 SUF system NifU family Fe-S cluster assembly protein\tK04488 iscU; nitrogen fixation protein NifU and related proteins" }, { "name":"DDW44_12835 electron transfer flavoprotein subunit beta\tK03521 fixA; electron transfer flavoprotein beta subunit" }, { "name":"DDW44_29855 electron transfer flavoprotein beta subunit\/FixA family protein\tK03521 fixA; electron transfer flavoprotein beta subunit" }, { "name":"DDW44_28460 dodecin family protein\tK09165 K09165; dodecin" } ] }, { "name":"99983 Lipid metabolism", "children":[ { "name":"DDW44_24805 DNA alkylation response protein\tK09456 aidB; putative acyl-CoA dehydrogenase" }, { "name":"DDW44_25050 DNA alkylation response protein\tK09456 aidB; putative acyl-CoA dehydrogenase" }, { "name":"DDW44_08140 fatty acid-binding protein DegV\tK25232 fakB; fatty acid kinase fatty acid binding subunit" } ] }, { "name":"99984 Nucleotide metabolism" }, { "name":"99985 Amino acid metabolism", "children":[ { "name":"DDW44_06110 hypothetical protein\tK06203 cysZ; CysZ protein" }, { "name":"DDW44_03655 YggS family pyridoxal phosphate-dependent enzyme\tK06997 yggS; PLP dependent protein" } ] }, { "name":"99986 Glycan metabolism", "children":[ { "name":"DDW44_11875 LysM peptidoglycan-binding domain-containing protein\tK21687 rpfA; resuscitation-promoting factor RpfA" }, { "name":"DDW44_11880 transglycosylase domain-containing protein\tK21687 rpfA; resuscitation-promoting factor RpfA" }, { "name":"DDW44_12180 resuscitation-promoting factor\tK21688 rpfB; resuscitation-promoting factor RpfB" } ] }, { "name":"99987 Cofactor metabolism" }, { "name":"99988 Secondary metabolism" }, { "name":"99999 Others", "children":[ { "name":"DDW44_05140 DoxX family protein\tK15977 K15977; putative oxidoreductase" }, { "name":"DDW44_05710 DoxX family protein\tK15977 K15977; putative oxidoreductase" }, { "name":"DDW44_27625 DoxX family membrane protein\tK15977 K15977; putative oxidoreductase" }, { "name":"DDW44_12365 BrxA\/BrxB family bacilliredoxin\tK26958 brxA_B; bacilliredoxin" } ] } ] }, { "name":"09192 Unclassified: genetic information processing", "children":[ { "name":"99973 Transcription", "children":[ { "name":"DDW44_03335 cold-shock protein\tK03704 cspA; cold shock protein" }, { "name":"DDW44_06060 cold-shock protein\tK03704 cspA; cold shock protein" }, { "name":"DDW44_12740 hypothetical protein\tK03704 cspA; cold shock protein" }, { "name":"DDW44_13620 cold-shock protein\tK03704 cspA; cold shock protein" }, { "name":"DDW44_13770 cold-shock protein\tK03704 cspA; cold shock protein" }, { "name":"DDW44_17405 cold-shock protein\tK03704 cspA; cold shock protein" }, { "name":"DDW44_27145 RNA-binding transcriptional accessory protein\tK06959 tex; protein Tex" } ] }, { "name":"99974 Translation" }, { "name":"99975 Protein processing", "children":[ { "name":"DDW44_09605 ATP-dependent Clp protease adapter ClpS\tK06891 clpS; ATP-dependent Clp protease adaptor protein ClpS" }, { "name":"DDW44_08400 trigger factor\tK03545 tig; trigger factor" }, { "name":"DDW44_01720 urease accessory protein UreF\tK03188 ureF; urease accessory protein" }, { "name":"DDW44_01715 ureG; urease accessory protein UreG\tK03189 ureG; urease accessory protein" }, { "name":"DDW44_01710 urease accessory protein\tK03190 ureD; urease accessory protein" }, { "name":"DDW44_09850 SsrA-binding protein SmpB\tK03664 smpB; SsrA-binding protein" }, { "name":"DDW44_00955 HypC\/HybG\/HupF family hydrogenase formation chaperone\tK04653 hypC; hydrogenase expression\/formation protein HypC" }, { "name":"DDW44_00950 hydrogenase formation protein HypD\tK04654 hypD; hydrogenase expression\/formation protein HypD" }, { "name":"DDW44_00945 hypE; hydrogenase expression\/formation protein HypE\tK04655 hypE; hydrogenase expression\/formation protein HypE" }, { "name":"DDW44_00960 hypF; carbamoyltransferase HypF\tK04656 hypF; hydrogenase maturation protein HypF" }, { "name":"DDW44_22250 Mg chelatase-like protein\tK07391 comM; magnesium chelatase family protein" }, { "name":"DDW44_17315 cytochrome C biogenesis protein\tK07399 resB; cytochrome c biogenesis protein" }, { "name":"DDW44_25790 SelT\/SelW\/SelH family protein\tK07401 K07401; selenoprotein W-related protein" }, { "name":"DDW44_24950 XshC-Cox1-family protein\tK07402 xdhC; xanthine dehydrogenase accessory factor" }, { "name":"DDW44_29410 XshC-Cox1 family protein\tK07402 xdhC; xanthine dehydrogenase accessory factor" } ] }, { "name":"99976 Replication and repair", "children":[ { "name":"DDW44_14355 restriction endonuclease\tK07454 K07454; putative restriction endonuclease" }, { "name":"DDW44_22245 YraN family protein\tK07460 yraN; putative endonuclease" }, { "name":"DDW44_02290 recombinase RecB\tK07465 K07465; putative RecB family exonuclease" }, { "name":"DDW44_22255 dprA; DNA-protecting protein DprA\tK04096 smf; DNA processing protein" }, { "name":"DDW44_11520 AAA family ATPase\tK07478 ycaJ; putative ATPase" }, { "name":"DDW44_31000 DNA primase\tK06919 K06919; putative DNA primase\/helicase" }, { "name":"DDW44_00085 IS30 family transposase\tK07482 K07482; transposase, IS30 family" }, { "name":"DDW44_10635 IS30 family transposase\tK07482 K07482; transposase, IS30 family" }, { "name":"DDW44_13700 IS30 family transposase\tK07482 K07482; transposase, IS30 family" }, { "name":"DDW44_14380 IS30 family transposase\tK07482 K07482; transposase, IS30 family" }, { "name":"DDW44_20115 IS30 family transposase\tK07482 K07482; transposase, IS30 family" }, { "name":"DDW44_25245 IS30 family transposase\tK07482 K07482; transposase, IS30 family" }, { "name":"DDW44_00105 hypothetical protein\tK07483 K07483; transposase" }, { "name":"DDW44_09285 helix-turn-helix domain-containing protein\tK07483 K07483; transposase" }, { "name":"DDW44_12120 IS110 family transposase\tK07486 K07486; transposase" }, { "name":"DDW44_31220 IS110 family transposase\tK07486 K07486; transposase" }, { "name":"DDW44_00100 IS256 family transposase\tK07493 K07493; putative transposase" }, { "name":"DDW44_23455 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"DDW44_14030 integrase\tK14059 int; integrase" } ] }, { "name":"99979 Viral proteins" }, { "name":"99998 Others", "children":[ { "name":"DDW44_04135 PspA\/IM30 family protein\tK03969 pspA; phage shock protein A" }, { "name":"DDW44_15955 YbaB\/EbfC family nucleoid-associated protein\tK09747 ebfC; nucleoid-associated protein EbfC" } ] } ] }, { "name":"09193 Unclassified: signaling and cellular processes", "children":[ { "name":"99977 Transport", "children":[ { "name":"DDW44_09595 proY; proline-specific permease ProY\tK03293 TC.AAT; amino acid transporter, AAT family" }, { "name":"DDW44_06275 amino acid permease\tK03294 TC.APA; basic amino acid\/polyamine antiporter, APA family" }, { "name":"DDW44_11290 amino acid permease\tK03294 TC.APA; basic amino acid\/polyamine antiporter, APA family" }, { "name":"DDW44_17650 amino acid permease\tK03294 TC.APA; basic amino acid\/polyamine antiporter, APA family" }, { "name":"DDW44_24415 amino acid permease\tK03294 TC.APA; basic amino acid\/polyamine antiporter, APA family" }, { "name":"DDW44_26505 amino acid permease\tK03294 TC.APA; basic amino acid\/polyamine antiporter, APA family" }, { "name":"DDW44_10350 peptide MFS transporter\tK03305 TC.POT; proton-dependent oligopeptide transporter, POT family" }, { "name":"DDW44_06630 anion permease\tK03306 TC.PIT; inorganic phosphate transporter, PiT family" }, { "name":"DDW44_07720 inorganic phosphate transporter\tK03306 TC.PIT; inorganic phosphate transporter, PiT family" }, { "name":"DDW44_08865 sodium:solute symporter\tK03307 TC.SSS; solute:Na+ symporter, SSS family" }, { "name":"DDW44_26700 alanine:cation symporter family protein\tK03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family" }, { "name":"DDW44_26220 nitrate reductase\tK03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family" } ] }, { "name":"99978 Cell growth", "children":[ { "name":"DDW44_16380 ATP-binding protein\tK07321 cooC; CO dehydrogenase maturation factor" }, { "name":"DDW44_15050 single-stranded DNA-binding protein\tK06346 jag; spoIIIJ-associated protein" }, { "name":"DDW44_07385 sporulation protein\tK06377 spo0M; sporulation-control protein" }, { "name":"DDW44_25330 sporulation protein\tK06377 spo0M; sporulation-control protein" } ] }, { "name":"99993 Cell motility" }, { "name":"99995 Signaling proteins", "children":[ { "name":"DDW44_30020 Tellurium resistance\tK05792 terA; tellurite resistance protein TerA" }, { "name":"DDW44_05980 chemical-damaging agent resistance protein C\tK05795 terD; tellurium resistance protein TerD" }, { "name":"DDW44_05985 TerD family protein\tK05795 terD; tellurium resistance protein TerD" }, { "name":"DDW44_13850 TerD family protein\tK05795 terD; tellurium resistance protein TerD" }, { "name":"DDW44_03025 TerD family protein\tK05791 terZ; tellurium resistance protein TerZ" }, { "name":"DDW44_19840 typA; translational GTPase TypA\tK06207 typA; GTP-binding protein" }, { "name":"DDW44_08010 PhoH family protein\tK06217 phoH; phosphate starvation-inducible protein PhoH and related proteins" }, { "name":"DDW44_19555 PhoH family protein\tK07175 phoH2; PhoH-like ATPase" }, { "name":"DDW44_17670 YajQ family cyclic di-GMP-binding protein\tK09767 yajQ; cyclic-di-GMP-binding protein" } ] }, { "name":"99992 Structural proteins", "children":[ { "name":"DDW44_22995 DUF4115 domain-containing protein\tK15539 rodZ; cytoskeleton protein RodZ" }, { "name":"DDW44_28820 gas vesicle synthesis-like protein\tK23262 gvpA; gas vesicle structural protein" } ] }, { "name":"99994 Others", "children":[ { "name":"DDW44_14115 phoU; phosphate transport system regulatory protein PhoU\tK02039 phoU; phosphate transport system protein" }, { "name":"DDW44_03890 iron-sulfur binding protein\tK02192 bfd; bacterioferritin-associated ferredoxin" }, { "name":"DDW44_00565 tellurium resistance protein\tK05793 terB; tellurite resistance protein TerB" }, { "name":"DDW44_07790 divalent-cation tolerance protein CutA\tK03926 cutA; periplasmic divalent cation tolerance protein" }, { "name":"DDW44_29610 divalent-cation tolerance protein CutA\tK03926 cutA; periplasmic divalent cation tolerance protein" }, { "name":"DDW44_13665 copper homeostasis protein CutC\tK06201 cutC; copper homeostasis protein" }, { "name":"DDW44_13180 monooxygenase\tK07222 K07222; putative flavoprotein involved in K+ transport" }, { "name":"DDW44_25065 pyridine nucleotide-disulfide oxidoreductase\tK07222 K07222; putative flavoprotein involved in K+ transport" } ] } ] }, { "name":"09194 Poorly characterized", "children":[ { "name":"99996 General function prediction only", "children":[ { "name":"DDW44_10750 oxidoreductase\tK03810 mviM; virulence factor" }, { "name":"DDW44_15880 PHP domain-containing protein\tK04477 ycdX; putative hydrolase" }, { "name":"DDW44_16430 DUF1998 domain-containing protein\tK06877 K06877; DEAD\/DEAH box helicase domain-containing protein" }, { "name":"DDW44_08620 globin\tK06886 glbN; hemoglobin" }, { "name":"DDW44_15185 oxidoreductase\tK06886 glbN; hemoglobin" }, { "name":"DDW44_00470 hypothetical protein\tK06994 K06994; putative drug exporter of the RND superfamily" }, { "name":"DDW44_09585 MMPL family transporter\tK06994 K06994; putative drug exporter of the RND superfamily" }, { "name":"DDW44_12305 hypothetical protein\tK06994 K06994; putative drug exporter of the RND superfamily" }, { "name":"DDW44_21600 hypothetical protein\tK06994 K06994; putative drug exporter of the RND superfamily" }, { "name":"DDW44_25270 hypothetical protein\tK06994 K06994; putative drug exporter of the RND superfamily" }, { "name":"DDW44_31340 hypothetical protein\tK06994 K06994; putative drug exporter of the RND superfamily" }, { "name":"DDW44_10700 patatin\tK07001 K07001; NTE family protein" }, { "name":"DDW44_21955 HAD family hydrolase\tK07025 K07025; putative hydrolase of the HAD superfamily" }, { "name":"DDW44_02835 sufB; Fe-S cluster assembly protein SufB\tK09014 sufB; Fe-S cluster assembly protein SufB" }, { "name":"DDW44_02830 sufD; Fe-S cluster assembly protein SufD\tK09015 sufD; Fe-S cluster assembly protein SufD" }, { "name":"DDW44_00750 ribonuclease BN\tK07058 K07058; membrane protein" }, { "name":"DDW44_00915 ribonuclease BN\tK07058 K07058; membrane protein" }, { "name":"DDW44_18665 YihY\/virulence factor BrkB family protein\tK07058 K07058; membrane protein" }, { "name":"DDW44_24810 hypothetical protein\tK07058 K07058; membrane protein" }, { "name":"DDW44_25305 ribonuclease BN\tK07058 K07058; membrane protein" }, { "name":"DDW44_26035 hypothetical protein\tK07058 K07058; membrane protein" }, { "name":"DDW44_27710 YihY\/virulence factor BrkB family protein\tK07058 K07058; membrane protein" }, { "name":"DDW44_05100 phosphoribosyl transferase\tK07100 K07100; putative phosphoribosyl transferase" }, { "name":"DDW44_11145 hypothetical protein\tK07113 fxsA; UPF0716 protein FxsA" }, { "name":"DDW44_18965 glyoxalase\tK04750 phnB; PhnB protein" }, { "name":"DDW44_01700 cytochrome c oxidase assembly protein\tK02351 K02351; putative membrane protein" }, { "name":"DDW44_06990 chitin-binding protein\tK03933 cpbD; chitin-binding protein" }, { "name":"DDW44_16735 hypothetical protein\tK03975 dedA; membrane-associated protein" }, { "name":"DDW44_03795 hypothetical protein\tK01421 yhgE; putative membrane protein" }, { "name":"DDW44_14865 phage holin family protein\tK08972 K08972; putative membrane protein" }, { "name":"DDW44_02910 hypothetical protein\tK08981 K08981; putative membrane protein" }, { "name":"DDW44_14620 hypothetical protein\tK08982 K08982; putative membrane protein" }, { "name":"DDW44_24495 DUF4142 domain-containing protein\tK08995 K08995; putative membrane protein" }, { "name":"DDW44_26950 hypothetical protein\tK09858 K09858; SEC-C motif domain protein" } ] }, { "name":"99997 Function unknown", "children":[ { "name":"DDW44_11105 ankyrin repeat domain-containing protein\tK06867 K06867; uncharacterized protein" }, { "name":"DDW44_07040 FxsB family radical SAM\/SPASM domain protein\tK06871 K06871; uncharacterized protein" }, { "name":"DDW44_19295 hypothetical protein\tK06888 K06888; uncharacterized protein" }, { "name":"DDW44_00530 alpha\/beta hydrolase\tK06889 K06889; uncharacterized protein" }, { "name":"DDW44_07710 alpha\/beta hydrolase\tK06889 K06889; uncharacterized protein" }, { "name":"DDW44_14180 SnoaL-like polyketide cyclase\tK06893 K06893; uncharacterized protein" }, { "name":"DDW44_04220 ATPase\tK06921 K06921; uncharacterized protein" }, { "name":"DDW44_18775 ATPase\tK06921 K06921; uncharacterized protein" }, { "name":"DDW44_30065 ATPase\tK06921 K06921; uncharacterized protein" }, { "name":"DDW44_10640 CoA-binding protein\tK06929 K06929; uncharacterized protein" }, { "name":"DDW44_08510 ATP-binding protein\tK06945 K06945; uncharacterized protein" }, { "name":"DDW44_11015 ATP-binding protein\tK06945 K06945; uncharacterized protein" }, { "name":"DDW44_20750 ATP-binding protein\tK06945 K06945; uncharacterized protein" }, { "name":"DDW44_21905 ATP-binding protein\tK06945 K06945; uncharacterized protein" }, { "name":"DDW44_21925 ATP-binding protein\tK06945 K06945; uncharacterized protein" }, { "name":"DDW44_26850 ATP-binding protein\tK06945 K06945; uncharacterized protein" }, { "name":"DDW44_27425 ATP-binding protein\tK06945 K06945; uncharacterized protein" }, { "name":"DDW44_29185 ATP-binding protein\tK06945 K06945; uncharacterized protein" }, { "name":"DDW44_29375 ATP\/GTP-binding protein\tK06945 K06945; uncharacterized protein" }, { "name":"DDW44_22195 RNA-binding protein\tK06960 K06960; uncharacterized protein" }, { "name":"DDW44_22725 DUF4081 domain-containing protein\tK06976 K06976; uncharacterized protein" }, { "name":"DDW44_17525 peptidase S15\tK06978 K06978; uncharacterized protein" }, { "name":"DDW44_03045 hypothetical protein\tK06995 K06995; uncharacterized protein" }, { "name":"DDW44_13110 hydrolase\tK06996 K06996; uncharacterized protein" }, { "name":"DDW44_23550 VOC family protein\tK06996 K06996; uncharacterized protein" }, { "name":"DDW44_24870 doxorubicin biosynthesis protein DnrV\tK06996 K06996; uncharacterized protein" }, { "name":"DDW44_27000 hydroxylase\tK06996 K06996; uncharacterized protein" }, { "name":"DDW44_29060 hydrolase\tK06996 K06996; uncharacterized protein" }, { "name":"DDW44_02775 endonuclease\/exonuclease\/phosphatase\tK07004 K07004; uncharacterized protein" }, { "name":"DDW44_10830 hypothetical protein\tK07005 K07005; uncharacterized protein" }, { "name":"DDW44_25310 hydrolase\tK07006 K07006; uncharacterized protein" }, { "name":"DDW44_26190 PPOX class F420-dependent oxidoreductase\tK07006 K07006; uncharacterized protein" }, { "name":"DDW44_20395 hydrolase\tK07020 K07020; uncharacterized protein" }, { "name":"DDW44_07850 glyoxalase\tK07032 K07032; uncharacterized protein" }, { "name":"DDW44_02860 amidohydrolase\tK07045 K07045; uncharacterized protein" }, { "name":"DDW44_14500 amidohydrolase\tK07045 K07045; uncharacterized protein" }, { "name":"DDW44_20860 metal-dependent hydrolase\tK07045 K07045; uncharacterized protein" }, { "name":"DDW44_07695 hypothetical protein\tK07054 K07054; uncharacterized protein" }, { "name":"DDW44_04255 TIGR01777 family protein\tK07071 K07071; uncharacterized protein" }, { "name":"DDW44_07205 nucleotidyltransferase\tK07074 K07074; uncharacterized protein" }, { "name":"DDW44_02490 FAD-binding dehydrogenase\tK07077 K07077; uncharacterized protein" }, { "name":"DDW44_23180 hypothetical protein\tK07080 K07080; uncharacterized protein" }, { "name":"DDW44_06220 hypothetical protein\tK07089 K07089; uncharacterized protein" }, { "name":"DDW44_00635 integral membrane family protein\tK07090 K07090; uncharacterized protein" }, { "name":"DDW44_07400 sulfite exporter TauE\/SafE family protein\tK07090 K07090; uncharacterized protein" }, { "name":"DDW44_07820 hypothetical protein\tK07090 K07090; uncharacterized protein" }, { "name":"DDW44_04895 PhoX family protein\tK07093 K07093; uncharacterized protein" }, { "name":"DDW44_24515 Tat pathway signal sequence domain protein\tK07093 K07093; uncharacterized protein" }, { "name":"DDW44_01240 YfcE family phosphodiesterase\tK07095 K07095; uncharacterized protein" }, { "name":"DDW44_16255 metallophosphoesterase\tK07098 K07098; uncharacterized protein" }, { "name":"DDW44_18675 hypothetical protein\tK07098 K07098; uncharacterized protein" }, { "name":"DDW44_18295 SDR family NAD(P)-dependent oxidoreductase\tK07124 K07124; uncharacterized protein" }, { "name":"DDW44_11770 diacylglyceryl transferase\tK07131 K07131; uncharacterized protein" }, { "name":"DDW44_21915 roadblock\/LC7 domain-containing protein\tK07131 K07131; uncharacterized protein" }, { "name":"DDW44_21935 roadblock\/LC7 domain-containing protein\tK07131 K07131; uncharacterized protein" }, { "name":"DDW44_30010 MOSC domain-containing protein\tK07140 K07140; MOSC domain-containing protein" }, { "name":"DDW44_25970 hypothetical protein\tK07148 K07148; uncharacterized protein" }, { "name":"DDW44_03535 ATP-dependent protease\tK07157 K07157; uncharacterized protein" }, { "name":"DDW44_29415 hypothetical protein\tK07161 K07161; uncharacterized protein" }, { "name":"DDW44_04705 hypothetical protein\tK07164 K07164; uncharacterized protein" }, { "name":"DDW44_15060 membrane protein insertion efficiency factor YidD\tK08998 K08998; uncharacterized protein" }, { "name":"DDW44_10895 bifunctional nuclease family protein\tK08999 K08999; uncharacterized protein" }, { "name":"DDW44_19525 DUF192 domain-containing protein\tK09005 K09005; uncharacterized protein" }, { "name":"DDW44_11860 DUF501 domain-containing protein\tK09009 K09009; uncharacterized protein" }, { "name":"DDW44_16270 GatB\/YqeY domain-containing protein\tK09117 K09117; uncharacterized protein" }, { "name":"DDW44_20305 hypothetical protein\tK09118 K09118; uncharacterized protein" }, { "name":"DDW44_17270 hypothetical protein\tK09122 K09122; uncharacterized protein" }, { "name":"DDW44_02915 hypothetical protein\tK09167 K09167; uncharacterized protein" }, { "name":"DDW44_00435 DUF1349 domain-containing protein\tK09702 K09702; uncharacterized protein" }, { "name":"DDW44_18390 cupin domain-containing protein\tK09705 K09705; uncharacterized protein" }, { "name":"DDW44_27630 DUF309 domain-containing protein\tK09763 K09763; uncharacterized protein" }, { "name":"DDW44_22775 DUF503 domain-containing protein\tK09764 K09764; uncharacterized protein" }, { "name":"DDW44_10175 Trm112 family protein\tK09791 K09791; uncharacterized protein" }, { "name":"DDW44_05975 hypothetical protein\tK09799 K09799; uncharacterized protein" }, { "name":"DDW44_04695 peroxide stress protein YaaA\tK09861 K09861; uncharacterized protein" }, { "name":"DDW44_10060 winged helix-turn-helix domain-containing protein\tK09927 K09927; uncharacterized protein" }, { "name":"DDW44_00325 DUF692 domain-containing protein\tK09930 K09930; uncharacterized protein" }, { "name":"DDW44_24490 DUF692 domain-containing protein\tK09930 K09930; uncharacterized protein" }, { "name":"DDW44_02580 hypothetical protein\tK09957 K09957; uncharacterized protein" }, { "name":"DDW44_29065 DUF779 domain-containing protein\tK09959 K09959; uncharacterized protein" }, { "name":"DDW44_29695 acetyltransferase\tK09964 K09964; uncharacterized protein" }, { "name":"DDW44_01805 hypothetical protein\tK09981 K09981; uncharacterized protein" }, { "name":"DDW44_06635 DUF47 domain-containing protein\tK07220 K07220; uncharacterized protein" }, { "name":"DDW44_22765 DUF448 domain-containing protein\tK07742 ylxR; uncharacterized protein" } ] } ] } ] } ] }