| Bacteria |
Enterobacteria |
Escherichia |
Escherichia coli |
1/68 |
| Salmonella |
Salmonella enterica |
3/51 |
| Enterobacter |
Enterobacter sp. R4-368 |
1/ 1 |
| Cronobacter |
Cronobacter condimenti |
1/ 1 |
| Cronobacter dublinensis |
1/ 1 |
| Cronobacter muytjensii |
1/ 1 |
| Klebsiella |
Klebsiella pneumoniae |
1/25 |
| Klebsiella michiganensis |
1/ 5 |
| Cedecea |
Cedecea neteri |
1/ 3 |
| Cedecea lapagei |
1/ 1 |
| Kosakonia |
Kosakonia sacchari |
1/ 1 |
| Kosakonia pseudosacchari |
1/ 1 |
| Buttiauxella |
Buttiauxella sp. 3AFRM03 |
1/ 1 |
| Buttiauxella ferragutiae |
1/ 1 |
| Phytobacter |
Phytobacter diazotrophicus |
1/ 1 |
| Phytobacter sp. MRY16-398 |
1/ 1 |
| |
Enterobacteriaceae bacterium bta3-1 |
1/ 1 |
| Yersinia |
Yersinia pseudotuberculosis |
1/11 |
| Yersinia similis |
1/ 1 |
| Prodigiosinella |
Prodigiosinella aquatilis |
1/ 1 |
| Prodigiosinella confusarubida |
2/ 2 |
| Pectobacterium |
Pectobacterium punjabense |
1/ 1 |
| Dickeya |
Dickeya chrysanthemi |
1/ 2 |
| Brenneria |
Brenneria rubrifaciens |
1/ 1 |
| Pantoea |
Pantoea rwandensis |
1/ 1 |
| Photorhabdus |
Photorhabdus laumondii |
2/ 2 |
| Photorhabdus asymbiotica |
1/ 1 |
| Photorhabdus thracensis |
1/ 1 |
| Photorhabdus akhurstii |
1/ 1 |
| Photorhabdus luminescens |
1/ 2 |
| Xenorhabdus |
Xenorhabdus bovienii |
2/ 2 |
| Xenorhabdus nematophila |
2/ 2 |
| Xenorhabdus doucetiae |
1/ 1 |
| Xenorhabdus hominickii |
1/ 1 |
| Xenorhabdus budapestensis |
1/ 1 |
| Hafnia |
Hafnia alvei |
1/ 2 |
| Hafnia paralvei |
1/ 1 |
| Obesumbacterium |
Obesumbacterium proteus |
1/ 1 |
| Other Gammaproteobacteria |
Gallibacterium |
Gallibacterium anatis |
1/ 2 |
| Stenotrophomonas |
Stenotrophomonas sp. LM091 |
1/ 1 |
| Vibrio |
Vibrio vulnificus |
3/ 4 |
| Vibrio natriegens |
1/ 1 |
| Vibrio owensii |
1/ 1 |
| Vibrio rotiferianus |
1/ 1 |
| Vibrio atlanticus |
1/ 1 |
| Vibrio sp. EJY3 |
1/ 1 |
| Vibrio furnissii |
1/ 2 |
| Vibrio coralliilyticus |
2/ 2 |
| Vibrio tubiashii |
1/ 1 |
| Vibrio europaeus |
1/ 1 |
| Vibrio fluvialis |
1/ 2 |
| Vibrio mediterranei |
1/ 1 |
| Photobacterium |
Photobacterium profundum |
1/ 1 |
| Pseudomonas |
Pseudomonas syringae group genomosp. 3 |
1/ 1 |
| Pseudomonas syringae |
1/ 3 |
| Pseudomonas savastanoi |
1/ 3 |
| Pseudomonas cannabina |
1/ 1 |
| Pseudomonas tremae |
1/ 1 |
| Pseudomonas synxantha |
1/ 1 |
| Pseudomonas trivialis |
1/ 1 |
| Pseudomonas corrugata |
1/ 1 |
| Pseudomonas simiae |
2/ 2 |
| Pseudomonas lurida |
1/ 1 |
| Pseudomonas brassicacearum |
1/ 2 |
| Pseudomonas frederiksbergensis |
1/ 1 |
| Pseudomonas viciae |
1/ 1 |
| Pseudomonas tritici |
1/ 1 |
| Pseudomonas pergaminensis |
1/ 1 |
| Azotobacter |
Azotobacter vinelandii |
3/ 3 |
| Moraxella |
Moraxella cuniculi |
1/ 1 |
| Shewanella |
Shewanella aestuarii |
1/ 1 |
| Thalassotalea |
Thalassotalea sp. PS06 |
1/ 1 |
| Moritella |
Moritella viscosa |
1/ 1 |
| Moritella marina |
1/ 1 |
| Coxiella |
Coxiella burnetii |
5/ 5 |
| Candidatus Coxiella mudrowiae |
1/ 1 |
| Legionella |
Legionella hackeliae |
1/ 1 |
| Legionella clemsonensis |
1/ 1 |
| Legionella israelensis |
1/ 1 |
| Legionella jordanis |
1/ 1 |
| Legionella spiritensis |
1/ 1 |
| Legionella micdadei |
1/ 1 |
| Francisella |
Francisella philomiragia |
7/ 7 |
| Francisella salina |
1/ 1 |
| Francisella adeliensis |
1/ 1 |
| Francisella marina |
1/ 1 |
| Reinekea |
Reinekea forsetii |
1/ 1 |
| Betaproteobacteria |
Ralstonia |
Ralstonia pseudosolanacearum |
4/ 4 |
| Ralstonia solanacearum |
2/ 5 |
| Burkholderia |
Burkholderia oklahomensis |
2/ 2 |
| Burkholderia lata |
1/ 1 |
| Burkholderia orbicola |
1/ 1 |
| Burkholderia cepacia |
1/ 4 |
| Burkholderia stagnalis |
1/ 1 |
| Burkholderia glumae |
2/ 2 |
| Paraburkholderia |
Paraburkholderia megapolitana |
1/ 1 |
| Orrella |
Orrella dioscoreae |
1/ 1 |
| Ottowia |
Ottowia sp. oral taxon 894 |
1/ 1 |
| Serpentinimonas |
Serpentinimonas raichei |
1/ 1 |
| Serpentinimonas maccroryi |
1/ 1 |
| Aquincola |
Aquincola tertiaricarbonis |
1/ 2 |
| Herbaspirillum |
Herbaspirillum sp. meg3 |
1/ 1 |
| Alphaproteobacteria |
Rhizobium |
Rhizobium jaguaris |
1/ 1 |
| Rhizobium sp. 11515TR |
1/ 1 |
| Rhizobium rhizogenes |
1/ 2 |
| Bosea |
Bosea vaviloviae |
1/ 1 |
| Bartonella |
Bartonella tribocorum |
2/ 2 |
| Bartonella grahamii |
1/ 1 |
| Sphingosinicella |
Sphingosinicella sp. BN140058 |
1/ 1 |
| Azospirillum |
Azospirillum sp. B510 |
1/ 1 |
| Skermanella |
Skermanella mucosa |
1/ 1 |
| Rhodospirillum |
Rhodospirillum rubrum |
2/ 2 |
| Epsilonproteobacteria |
Wolinella |
Wolinella succinogenes |
1/ 1 |
| Campylobacter |
Campylobacter jejuni |
22/24 |
| Campylobacter coli |
8/ 9 |
| Campylobacter helveticus |
1/ 1 |
| Campylobacter hepaticus |
1/ 1 |
| Campylobacter upsaliensis |
1/ 1 |
| Campylobacter vulpis |
1/ 1 |
| Aliarcobacter |
Aliarcobacter butzleri |
1/ 4 |
| Aliarcobacter trophiarum |
1/ 1 |
| Aliarcobacter cibarius |
1/ 1 |
| Aliarcobacter cryaerophilus |
1/ 1 |
| Aliarcobacter lanthieri |
1/ 1 |
| Aliarcobacter faecis |
1/ 1 |
| Arcobacter |
Arcobacter nitrofigilis |
1/ 1 |
| Arcobacter ellisii |
1/ 1 |
| Arcobacter aquimarinus |
1/ 1 |
| Arcobacter suis |
1/ 1 |
| Arcobacter cloacae |
1/ 1 |
| Arcobacter venerupis |
1/ 1 |
| Arcobacter defluvii |
1/ 1 |
| Arcobacter sp. L |
1/ 1 |
| Arcobacter acticola |
1/ 1 |
| Arcobacter porcinus |
1/ 1 |
| Poseidonibacter |
Poseidonibacter lekithochrous |
1/ 1 |
| Poseidonibacter parvus |
1/ 1 |
| Malaciobacter |
Malaciobacter halophilus |
1/ 1 |
| Malaciobacter mytili |
1/ 1 |
| Malaciobacter marinus |
1/ 1 |
| Malaciobacter canalis |
1/ 1 |
| Malaciobacter molluscorum |
1/ 1 |
| Malaciobacter pacificus |
1/ 1 |
| Halarcobacter |
Halarcobacter bivalviorum |
1/ 1 |
| Halarcobacter ebronensis |
1/ 1 |
| Halarcobacter anaerophilus |
1/ 1 |
| Sulfurovum |
Sulfurovum sp. NBC37-1 |
1/ 1 |
| Sulfurovum lithotrophicum |
1/ 1 |
| Sulfurovum indicum |
1/ 1 |
| Myxococcota |
Myxococcus |
Myxococcus xanthus |
1/ 1 |
| Myxococcus hansupus |
1/ 1 |
| Myxococcus sp. MxC21-1 |
1/ 1 |
| Corallococcus |
Corallococcus macrosporus |
2/ 2 |
| Bacilli |
Bacillus |
Bacillus subtilis |
1/14 |
| Bacillus licheniformis |
2/ 3 |
| Bacillus paralicheniformis |
1/ 1 |
| Bacillus velezensis |
3/12 |
| Bacillus amyloliquefaciens |
4/ 7 |
| Bacillus atrophaeus |
1/ 1 |
| Bacillus sonorensis |
1/ 1 |
| Bacillus tequilensis |
1/ 1 |
| Bacillus anthracis |
3/11 |
| Bacillus cereus |
8/15 |
| Bacillus cytotoxicus |
1/ 1 |
| Bacillus thuringiensis |
11/17 |
| Bacillus toyonensis |
1/ 1 |
| Bacillus pseudomycoides |
1/ 1 |
| Bacillus bombysepticus |
1/ 1 |
| Bacillus mobilis |
1/ 1 |
| Bacillus pacificus |
1/ 1 |
| Bacillus paranthracis |
1/ 1 |
| Bacillus albus |
1/ 1 |
| Bacillus pumilus |
3/ 4 |
| Bacillus infantis |
1/ 1 |
| Bacillus methanolicus |
1/ 1 |
| Bacillus glycinifermentans |
1/ 1 |
| Bacillus xiamenensis |
1/ 1 |
| Bacillus safensis |
1/ 1 |
| Bacillus sp. 1NLA3E |
1/ 1 |
| Bacillus sp. X1(2014) |
1/ 1 |
| Bacillus sp. Pc3 |
1/ 1 |
| Bacillus sp. OxB-1 |
1/ 1 |
| Bacillus sp. Y1 |
1/ 1 |
| Sutcliffiella |
Sutcliffiella horikoshii |
1/ 1 |
| Sutcliffiella cohnii |
1/ 1 |
| Niallia |
Niallia taxi |
1/ 1 |
| Niallia sp. Man26 |
1/ 1 |
| Priestia |
Priestia megaterium |
3/ 5 |
| Priestia flexa |
1/ 1 |
| Halalkalibacter |
Halalkalibacter krulwichiae |
1/ 1 |
| Shouchella |
Shouchella lehensis |
1/ 1 |
| Alkalihalophilus |
Alkalihalophilus pseudofirmus |
1/ 1 |
| Cytobacillus |
Cytobacillus oceanisediminis |
1/ 1 |
| Cytobacillus kochii |
1/ 1 |
| Cytobacillus firmus |
1/ 1 |
| Cytobacillus solani |
1/ 1 |
| Cytobacillus pseudoceanisediminis |
1/ 1 |
| Oceanobacillus |
Oceanobacillus iheyensis |
1/ 1 |
| Geobacillus |
Geobacillus kaustophilus |
1/ 1 |
| Geobacillus thermoleovorans |
1/ 2 |
| Geobacillus thermocatenulatus |
1/ 1 |
| Geobacillus sp. Y412MC61 |
1/ 1 |
| Geobacillus sp. Y412MC52 |
1/ 1 |
| Geobacillus sp. C56-T3 |
1/ 1 |
| Geobacillus sp. Y4.1MC1 |
1/ 1 |
| Geobacillus sp. 12AMOR1 |
1/ 1 |
| Geobacillus sp. LC300 |
1/ 1 |
| Geobacillus sp. JS12 |
1/ 1 |
| Parageobacillus |
Parageobacillus thermoglucosidasius |
2/ 2 |
| Parageobacillus caldoxylosilyticus |
1/ 1 |
| Parageobacillus sp. KH3-4 |
1/ 1 |
| Anoxybacillus |
Anoxybacillus sp. B2M1 |
1/ 1 |
| Anoxybacillus sp. B7M1 |
1/ 1 |
| Anoxybacillus sp. PDR2 |
1/ 1 |
| Anoxybacillus caldiproteolyticus |
1/ 1 |
| Lysinibacillus |
Lysinibacillus sphaericus |
1/ 2 |
| Lysinibacillus varians |
1/ 1 |
| Lysinibacillus fusiformis |
1/ 1 |
| Lysinibacillus sp. YS11 |
1/ 1 |
| Lysinibacillus sp. B2A1 |
1/ 1 |
| Lysinibacillus sp. SGAir0095 |
1/ 1 |
| Lysinibacillus pakistanensis |
1/ 1 |
| Lysinibacillus macroides |
1/ 1 |
| Lysinibacillus sp. CD3-6 |
1/ 1 |
| Lysinibacillus capsici |
1/ 1 |
| Lysinibacillus sp. PLM2 |
1/ 1 |
| Lysinibacillus louembei |
1/ 1 |
| Halobacillus |
Halobacillus litoralis |
1/ 1 |
| Terribacillus |
Terribacillus goriensis |
1/ 1 |
| Virgibacillus |
Virgibacillus sp. SK37 |
1/ 1 |
| Virgibacillus halodenitrificans |
1/ 1 |
| Virgibacillus sp. 6R |
1/ 1 |
| Virgibacillus phasianinus |
1/ 1 |
| Virgibacillus necropolis |
1/ 1 |
| Virgibacillus dokdonensis |
1/ 1 |
| Virgibacillus sp. MSP4-1 |
1/ 1 |
| Fictibacillus |
Fictibacillus phosphorivorans |
1/ 1 |
| Fictibacillus arsenicus |
1/ 1 |
| Peribacillus |
Peribacillus frigoritolerans |
1/ 1 |
| Caldibacillus |
Caldibacillus thermoamylovorans |
1/ 1 |
| Psychrobacillus |
Psychrobacillus sp. AK 1817 |
1/ 1 |
| Psychrobacillus sp. INOP01 |
1/ 1 |
| Gracilibacillus |
Gracilibacillus salitolerans |
1/ 1 |
| Pontibacillus |
Pontibacillus sp. HMF3514 |
1/ 1 |
| Neobacillus |
Neobacillus mesonae |
1/ 1 |
| Metabacillus |
Metabacillus sp. KUDC1714 |
1/ 1 |
| Metabacillus sediminilitoris |
1/ 1 |
| Metabacillus dongyingensis |
1/ 1 |
| Sediminibacillus |
Sediminibacillus dalangtanensis |
1/ 1 |
| Rossellomorea |
Rossellomorea vietnamensis |
1/ 1 |
| Rossellomorea aquimaris |
1/ 1 |
| Heyndrickxia |
Heyndrickxia coagulans |
3/ 3 |
| Heyndrickxia oleronia |
1/ 1 |
| Gottfriedia |
Gottfriedia acidiceleris |
1/ 1 |
| Sporolactobacillus |
Sporolactobacillus terrae |
1/ 1 |
| Staphylococcus |
Staphylococcus pseudintermedius |
1/ 2 |
| Staphylococcus delphini |
1/ 1 |
| Staphylococcus xylosus |
3/ 3 |
| Staphylococcus lutrae |
1/ 1 |
| Staphylococcus muscae |
1/ 1 |
| Exiguobacterium |
Exiguobacterium antarcticum |
1/ 1 |
| Exiguobacterium sp. MH3 |
1/ 1 |
| Exiguobacterium sp. U13-1 |
1/ 1 |
| Exiguobacterium alkaliphilum |
1/ 1 |
| Exiguobacterium acetylicum |
1/ 1 |
| Exiguobacterium profundum |
1/ 1 |
| Gemella |
Gemella sanguinis |
1/ 1 |
| Brevibacillus |
Brevibacillus brevis |
1/ 2 |
| Brevibacillus laterosporus |
1/ 1 |
| Brevibacillus formosus |
1/ 1 |
| Brevibacillus agri |
1/ 2 |
| Brevibacillus sp. 7WMA2 |
1/ 1 |
| Brevibacillus choshinensis |
1/ 1 |
| Brevibacillus parabrevis |
1/ 1 |
| Brevibacillus borstelensis |
1/ 1 |
| Paenibacillus |
Paenibacillus sp. JDR-2 |
1/ 1 |
| Paenibacillus sp. Y412MC10 |
1/ 1 |
| Paenibacillus polymyxa |
5/ 6 |
| Paenibacillus mucilaginosus |
3/ 3 |
| Paenibacillus terrae |
1/ 1 |
| Paenibacillus borealis |
1/ 1 |
| Paenibacillus graminis |
1/ 1 |
| Paenibacillus odorifer |
1/ 1 |
| Paenibacillus sp. FSL P4-0081 |
1/ 1 |
| Paenibacillus sp. FSL R5-0345 |
1/ 1 |
| Paenibacillus sp. FSL R5-0912 |
1/ 1 |
| Paenibacillus stellifer |
1/ 1 |
| Paenibacillus sp. FSL R7-0273 |
1/ 1 |
| Paenibacillus sp. FSL R7-0331 |
1/ 1 |
| Paenibacillus sp. FSL H7-0357 |
1/ 1 |
| Paenibacillus sp. FSL H7-0737 |
1/ 1 |
| Paenibacillus beijingensis |
1/ 1 |
| Paenibacillus sp. IHBB 10380 |
1/ 1 |
| Paenibacillus riograndensis |
1/ 1 |
| Paenibacillus sonchi |
1/ 1 |
| Paenibacillus peoriae |
1/ 1 |
| Paenibacillus naphthalenovorans |
1/ 1 |
| Paenibacillus sp. 32O-W |
1/ 1 |
| Paenibacillus bovis |
1/ 1 |
| Paenibacillus xylanexedens |
1/ 1 |
| Paenibacillus swuensis |
1/ 1 |
| Paenibacillus donghaensis |
1/ 1 |
| Paenibacillus ihbetae |
1/ 1 |
| Paenibacillus crassostreae |
1/ 1 |
| Paenibacillus kribbensis |
1/ 1 |
| Paenibacillus sp. IHB B 3084 |
1/ 1 |
| Paenibacillus vortex |
1/ 1 |
| Paenibacillus lautus |
1/ 1 |
| Paenibacillus lentus |
1/ 1 |
| Paenibacillus lutimineralis |
1/ 1 |
| Paenibacillus albus |
1/ 1 |
| Paenibacillus chitinolyticus |
1/ 1 |
| Paenibacillus baekrokdamisoli |
1/ 1 |
| Paenibacillus tritici |
1/ 1 |
| Paenibacillus algicola |
1/ 1 |
| Paenibacillus albicereus |
1/ 1 |
| Paenibacillus thiaminolyticus |
1/ 1 |
| Paenibacillus urinalis |
1/ 1 |
| Paenibacillus marchantiae |
1/ 1 |
| Paenibacillus dendritiformis |
1/ 1 |
| Paenibacillus macerans |
1/ 1 |
| Paenibacillus woosongensis |
1/ 1 |
| Paenibacillus spongiae |
1/ 1 |
| Paenibacillus aurantius |
1/ 1 |
| Paenibacillus pabuli |
1/ 1 |
| Paenibacillus glucanolyticus |
1/ 1 |
| Thermobacillus |
Thermobacillus composti |
1/ 1 |
| Aneurinibacillus |
Aneurinibacillus soli |
1/ 1 |
| Cohnella |
Cohnella abietis |
1/ 1 |
| Cohnella cholangitidis |
1/ 1 |
| Cohnella herbarum |
1/ 1 |
| Candidatus Pristimantibacillus |
Candidatus Pristimantibacillus lignocellulolyticus |
1/ 1 |
| Alicyclobacillus |
Alicyclobacillus acidocaldarius |
2/ 2 |
| Tumebacillus |
Tumebacillus avium |
1/ 1 |
| Tumebacillus algifaecis |
1/ 1 |
| Effusibacillus |
Effusibacillus dendaii |
1/ 1 |
| Solibacillus |
Solibacillus sp. R5-41 |
1/ 1 |
| Planococcus |
Planococcus sp. PAMC 21323 |
1/ 1 |
| Planococcus kocurii |
1/ 1 |
| Planococcus antarcticus |
1/ 1 |
| Planococcus donghaensis |
1/ 1 |
| Planococcus plakortidis |
1/ 1 |
| Planococcus faecalis |
1/ 1 |
| Jeotgalibacillus |
Jeotgalibacillus malaysiensis |
1/ 1 |
| Kurthia |
Kurthia sp. 11kri321 |
1/ 1 |
| Sporosarcina |
Sporosarcina psychrophila |
1/ 1 |
| Sporosarcina pasteurii |
1/ 2 |
| Rummeliibacillus |
Rummeliibacillus stabekisii |
1/ 1 |
| Paenisporosarcina |
Paenisporosarcina cavernae |
1/ 1 |
| Paenisporosarcina antarctica |
1/ 1 |
| Planomicrobium |
Planomicrobium sp. Y50 |
1/ 1 |
| Ureibacillus |
Ureibacillus thermophilus |
1/ 1 |
| Thermoactinomyces |
Thermoactinomyces vulgaris |
1/ 2 |
| Lactococcus |
Lactococcus lactis |
4/ 8 |
| Lactococcus garvieae |
2/ 3 |
| Lactococcus raffinolactis |
1/ 1 |
| Lactococcus allomyrinae |
1/ 1 |
| Lactococcus protaetiae |
1/ 1 |
| Lactococcus carnosus |
1/ 1 |
| Lactococcus paracarnosus |
1/ 1 |
| Lactococcus petauri |
1/ 1 |
| Lactococcus formosensis |
1/ 1 |
| Streptococcus |
Streptococcus pyogenes |
2/21 |
| Streptococcus pneumoniae |
5/26 |
| Streptococcus suis |
17/19 |
| Streptococcus dysgalactiae |
1/ 5 |
| Streptococcus gallolyticus |
3/ 3 |
| Streptococcus mitis |
1/ 1 |
| Streptococcus parasanguinis |
1/ 2 |
| Streptococcus salivarius |
1/ 6 |
| Streptococcus pseudopneumoniae |
1/ 1 |
| Streptococcus ilei |
1/ 2 |
| Streptococcus sp. A12 |
1/ 1 |
| Streptococcus sp. NPS 308 |
1/ 1 |
| Streptococcus koreensis |
1/ 1 |
| Streptococcus pluranimalium |
1/ 1 |
| Streptococcus merionis |
1/ 1 |
| Streptococcus parasuis |
1/ 1 |
| Streptococcus toyakuensis |
1/ 1 |
| Streptococcus rubneri |
1/ 1 |
| Lactobacillus |
Lactobacillus johnsonii |
2/ 4 |
| Lactobacillus acidophilus |
3/ 3 |
| Lactobacillus gasseri |
1/ 1 |
| Lactobacillus helveticus |
5/ 6 |
| Lactobacillus crispatus |
1/ 1 |
| Lactobacillus amylovorus |
3/ 3 |
| Lactobacillus gallinarum |
1/ 1 |
| Lactobacillus jensenii |
1/ 1 |
| Lactobacillus paragasseri |
1/ 1 |
| Lactobacillus kullabergensis |
1/ 1 |
| Lactobacillus taiwanensis |
1/ 1 |
| Lactobacillus ultunensis |
1/ 1 |
| Lacticaseibacillus |
Lacticaseibacillus paracasei |
10/10 |
| Lacticaseibacillus casei |
1/ 1 |
| Lacticaseibacillus rhamnosus |
6/ 6 |
| Lacticaseibacillus chiayiensis |
1/ 1 |
| Lacticaseibacillus zeae |
1/ 1 |
| Lacticaseibacillus huelsenbergensis |
1/ 1 |
| Lactiplantibacillus |
Lactiplantibacillus plantarum |
1/ 7 |
| Lactiplantibacillus pentosus |
1/ 1 |
| Liquorilactobacillus |
Liquorilactobacillus hordei |
1/ 1 |
| Liquorilactobacillus mali |
1/ 1 |
| Lentilactobacillus |
Lentilactobacillus buchneri |
2/ 3 |
| Lentilactobacillus parabuchneri |
1/ 1 |
| Lentilactobacillus curieae |
1/ 1 |
| Lentilactobacillus kefiri |
1/ 1 |
| Lentilactobacillus hilgardii |
1/ 1 |
| Levilactobacillus |
Levilactobacillus koreensis |
1/ 1 |
| Acetilactobacillus |
Acetilactobacillus jinshanensis |
1/ 1 |
| Ligilactobacillus |
Ligilactobacillus salivarius |
3/ 3 |
| Ligilactobacillus ruminis |
1/ 1 |
| Ligilactobacillus animalis |
1/ 1 |
| Loigolactobacillus |
Loigolactobacillus backii |
1/ 1 |
| Loigolactobacillus coryniformis |
1/ 1 |
| Paucilactobacillus |
Paucilactobacillus hokkaidonensis |
1/ 1 |
| Apilactobacillus |
Apilactobacillus kunkeei |
1/ 1 |
| Secundilactobacillus |
Secundilactobacillus paracollinoides |
1/ 1 |
| Secundilactobacillus malefermentans |
1/ 1 |
| Pediococcus |
Pediococcus claussenii |
1/ 1 |
| Pediococcus damnosus |
1/ 1 |
| Pediococcus inopinatus |
1/ 1 |
| Furfurilactobacillus |
Furfurilactobacillus rossiae |
1/ 1 |
| Companilactobacillus |
Companilactobacillus ginsenosidimutans |
1/ 1 |
| Companilactobacillus heilongjiangensis |
1/ 1 |
| Companilactobacillus alimentarius |
1/ 1 |
| Companilactobacillus zhachilii |
1/ 1 |
| Schleiferilactobacillus |
Schleiferilactobacillus harbinensis |
1/ 1 |
| Lapidilactobacillus |
Lapidilactobacillus dextrinicus |
1/ 1 |
| Oenococcus |
Oenococcus oeni |
1/ 2 |
| Oenococcus sp. UCMA 16435 |
1/ 1 |
| Oenococcus sicerae |
1/ 1 |
| Leuconostoc |
Leuconostoc mesenteroides |
1/ 4 |
| Leuconostoc kimchii |
1/ 1 |
| Leuconostoc sp. C2 |
1/ 1 |
| Leuconostoc carnosum |
1/ 1 |
| Leuconostoc gasicomitatum |
1/ 1 |
| Leuconostoc gelidum |
1/ 1 |
| Leuconostoc pseudomesenteroides |
1/ 1 |
| Weissella |
Weissella jogaejeotgali |
1/ 1 |
| Weissella paramesenteroides |
1/ 1 |
| Weissella viridescens |
1/ 2 |
| Enterococcus |
Enterococcus faecium |
5/ 6 |
| Enterococcus mundtii |
1/ 1 |
| Enterococcus gallinarum |
1/ 2 |
| Enterococcus silesiacus |
1/ 1 |
| Enterococcus gilvus |
1/ 1 |
| Enterococcus avium |
1/ 2 |
| Enterococcus saigonensis |
1/ 1 |
| Enterococcus lactis |
1/ 1 |
| Enterococcus raffinosus |
1/ 1 |
| Enterococcus montenegrensis |
1/ 1 |
| Tetragenococcus |
Tetragenococcus halophilus |
1/ 2 |
| Aerococcus |
Aerococcus urinaeequi |
1/ 1 |
| Aerococcus viridans |
1/ 1 |
| Carnobacterium |
Carnobacterium sp. 17-4 |
1/ 1 |
| Carnobacterium maltaromaticum |
1/ 1 |
| Carnobacterium inhibens |
1/ 1 |
| Carnobacterium sp. PL17GRE32 |
1/ 1 |
| Jeotgalibaca |
Jeotgalibaca porci |
1/ 1 |
| Dolosigranulum |
Dolosigranulum pigrum |
1/ 1 |
| Desemzia |
Desemzia incerta |
1/ 1 |
| Clostridia |
Clostridium |
Clostridium acetobutylicum |
2/ 3 |
| Clostridium beijerinckii |
3/ 3 |
| Clostridium kluyveri |
2/ 3 |
| Clostridium sp. BNL1100 |
1/ 1 |
| Clostridium pasteurianum |
3/ 4 |
| Clostridium carboxidivorans |
1/ 1 |
| Clostridium isatidis |
1/ 1 |
| Clostridium diolis |
1/ 1 |
| Clostridium cochlearium |
1/ 1 |
| Clostridium gelidum |
1/ 1 |
| Clostridium intestinale |
1/ 1 |
| Clostridium thermosuccinogenes |
1/ 1 |
| Hungatella |
Hungatella hathewayi |
1/ 1 |
| Proteiniclasticum |
Proteiniclasticum sp. QWL-01 |
1/ 1 |
| Ruminiclostridium |
Ruminiclostridium cellulolyticum |
1/ 1 |
| Ruminiclostridium papyrosolvens |
1/ 1 |
| Flavonifractor |
Flavonifractor plautii |
1/ 1 |
| Faecalibacterium |
Faecalibacterium duncaniae |
2/ 2 |
| Oscillibacter |
Oscillibacter valericigenes |
1/ 1 |
| Lawsonibacter |
Lawsonibacter asaccharolyticus |
1/ 1 |
| Petroclostridium |
Petroclostridium sp. X23 |
1/ 1 |
| Paludihabitans |
Paludicola sp. MB14-C6 |
1/ 1 |
| Agathobaculum |
Agathobaculum sp. NTUH-O15-33 |
1/ 1 |
| Symbiobacterium |
Symbiobacterium thermophilum |
1/ 1 |
| Desulfitobacterium |
Desulfitobacterium hafniense |
2/ 2 |
| Desulfitobacterium dehalogenans |
1/ 1 |
| Desulfitobacterium dichloroeliminans |
1/ 1 |
| Syntrophobotulus |
Syntrophobotulus glycolicus |
1/ 1 |
| Desulfosporosinus |
Desulfosporosinus meridiei |
1/ 1 |
| Dehalobacter |
Dehalobacter sp. DCA |
1/ 1 |
| Dehalobacter sp. CF |
1/ 1 |
| Dehalobacter restrictus |
1/ 1 |
| Desulforamulus |
Desulforamulus ruminis |
1/ 1 |
| Desulforamulus ferrireducens |
1/ 1 |
| Desulfofarcimen |
Desulfofarcimen acetoxidans |
1/ 1 |
| Candidatus Formimonas |
Candidatus Formimonas warabiya |
1/ 1 |
| Eubacterium |
Eubacterium callanderi |
1/ 1 |
| Eubacterium maltosivorans |
1/ 1 |
| Eubacterium limosum |
1/ 1 |
| Acetobacterium |
Acetobacterium wieringae |
1/ 1 |
| Alkalibacter |
Alkalibacter rhizosphaerae |
1/ 1 |
| Alkalicella |
Alkalicella caledoniensis |
1/ 1 |
| Thermaerobacter |
Thermaerobacter marianensis |
1/ 1 |
| Intestinimonas |
Intestinimonas butyriciproducens |
1/ 1 |
| Proteiniborus |
Proteiniborus sp. MB09-C3 |
1/ 1 |
| Roseburia |
Roseburia hominis |
1/ 1 |
| Roseburia intestinalis |
1/ 2 |
| Coprococcus |
Coprococcus sp. ART55/1 |
1/ 1 |
| Blautia |
Blautia obeum |
1/ 1 |
| Blautia pseudococcoides |
1/ 1 |
| Blautia argi |
1/ 1 |
| Blautia producta |
1/ 1 |
| Blautia wexlerae |
1/ 1 |
| Blautia parvula |
1/ 1 |
| Blautia coccoides |
1/ 1 |
| Lachnoclostridium |
Lachnoclostridium sp. YL32 |
1/ 1 |
| [Clostridium] hylemonae |
1/ 2 |
| Lacrimispora |
Lacrimispora saccharolytica |
2/ 2 |
| Anaerocolumna |
Anaerocolumna sedimenticola |
1/ 1 |
| Enterocloster |
Enterocloster bolteae |
1/ 2 |
| Enterocloster asparagiformis |
1/ 1 |
| Qiania |
Qiania dongpingensis |
1/ 1 |
| Agathobacter |
Agathobacter rectalis |
1/ 3 |
| Kineothrix |
Kineothrix sp. MB12-C1 |
1/ 1 |
| Claveliimonas |
Claveliimonas bilis |
1/ 1 |
| |
Lachnospiraceae bacterium KM106-2 |
1/ 1 |
| Anaerotignum |
Anaerotignum sp. MB30-C6 |
1/ 1 |
| Petrocella |
Petrocella atlantisensis |
1/ 1 |
| Vallitalea |
Vallitalea guaymasensis |
1/ 1 |
| Aminipila |
Aminipila luticellarii |
1/ 1 |
| Emergencia |
Emergencia timonensis |
1/ 1 |
| Geosporobacter |
Geosporobacter ferrireducens |
1/ 1 |
| Clostridioides |
Clostridioides difficile |
5/ 6 |
| Peptoclostridium |
Peptoclostridium acidaminophilum |
1/ 2 |
| Christensenella |
Christensenella minuta |
1/ 1 |
| Thermoanaerobacterium |
Thermoanaerobacterium thermosaccharolyticum |
2/ 3 |
| Thermoanaerobacterium xylanolyticum |
1/ 1 |
| Thermoanaerobacterium saccharolyticum |
1/ 1 |
| Other Bacillota |
Caldicellulosiruptor |
Caldicellulosiruptor saccharolyticus |
1/ 1 |
| Acidilutibacter |
Acidilutibacter cellobiosedens |
1/ 1 |
| Tissierella |
Tissierella sp. Yu-01 |
1/ 1 |
| Sedimentibacter |
Sedimentibacter sp. zth1 |
1/ 1 |
| Sporomusa |
Sporomusa termitida |
1/ 1 |
| Phascolarctobacterium |
Phascolarctobacterium faecium |
1/ 1 |
| Erysipelothrix |
Erysipelothrix rhusiopathiae |
2/ 2 |
| Erysipelothrix larvae |
1/ 1 |
| Erysipelothrix inopinata |
1/ 1 |
| Amedibacterium |
Amedibacterium intestinale |
2/ 2 |
| Intestinibaculum |
Intestinibaculum porci |
1/ 1 |
| Longicatena |
Longicatena caecimuris |
1/ 1 |
| Turicibacter |
Turicibacter sp. H121 |
1/ 1 |
| Mycoplasmatota |
Acholeplasma |
Acholeplasma oculi |
1/ 1 |
| Actinomycetota |
Collinsella |
Collinsella aerofaciens |
1/ 1 |
| Collinsella sp. zg1085 |
1/ 1 |
| Eggerthella |
Eggerthella lenta |
1/ 1 |
| Eggerthella sp. YY7918 |
1/ 1 |
| Eggerthella guodeyinii |
1/ 1 |
| Adlercreutzia |
Adlercreutzia equolifaciens |
1/ 1 |
| Adlercreutzia hattorii |
1/ 1 |
| Denitrobacterium |
Denitrobacterium detoxificans |
1/ 1 |
| Berryella |
Berryella intestinalis |
1/ 1 |
| Raoultibacter |
Raoultibacter timonensis |
1/ 1 |
| Corynebacterium |
Corynebacterium pseudotuberculosis |
14/18 |
| Corynebacterium ulcerans |
2/ 7 |
| Corynebacterium mustelae |
1/ 1 |
| Streptomyces |
Streptomyces vietnamensis |
1/ 1 |
| Streptomyces griseochromogenes |
1/ 1 |
| Streptomyces niveus |
1/ 2 |
| Streptomyces lavendulae |
1/ 2 |
| Streptomyces subrutilus |
1/ 1 |
| Streptomyces cinereoruber |
1/ 1 |
| Streptomyces tsukubensis |
1/ 1 |
| Streptomyces chartreusis |
1/ 1 |
| Kitasatospora |
Kitasatospora albolonga |
1/ 1 |
| Luteimicrobium |
Luteimicrobium xylanilyticum |
1/ 1 |
| Clavibacter |
Clavibacter michiganensis |
2/ 2 |
| Clavibacter sepedonicus |
1/ 1 |
| Clavibacter nebraskensis |
1/ 1 |
| Clavibacter capsici |
1/ 1 |
| Clavibacter zhangzhiyongii |
1/ 1 |
| Clavibacter phaseoli |
1/ 1 |
| Clavibacter californiensis |
1/ 1 |
| Rhodoluna |
Rhodoluna lacicola |
1/ 1 |
| Candidatus Rhodoluna planktonica |
1/ 1 |
| Rhodoluna sp. KAS3 |
1/ 1 |
| Aquiluna |
Aquiluna borgnonia |
1/ 1 |
| Aquiluna sp. KACHI24 |
1/ 1 |
| Cnuibacter |
Cnuibacter physcomitrellae |
1/ 1 |
| Mycetocola |
Mycetocola zhujimingii |
1/ 1 |
| Salinibacterium |
Salinibacterium hongtaonis |
1/ 1 |
| Salinibacterium sp. dk2585 |
1/ 1 |
| Humibacter |
Humibacter sp. BT305 |
1/ 1 |
| Humibacter ginsenosidimutans |
1/ 1 |
| Protaetiibacter |
Protaetiibacter larvae |
1/ 1 |
| Protaetiibacter sp. SSC-01 |
1/ 1 |
| Plantibacter |
Plantibacter sp. PA-3-X8 |
1/ 1 |
| Herbiconiux |
Herbiconiux sp. SALV-R1 |
1/ 1 |
| Arthrobacter |
Arthrobacter citreus |
1/ 1 |
| Beutenbergia |
Beutenbergia cavernae |
1/ 1 |
| Helcobacillus |
Helcobacillus massiliensis |
1/ 1 |
| Luteipulveratus |
Luteipulveratus mongoliensis |
1/ 1 |
| Xylanimonas |
Xylanimonas cellulosilytica |
1/ 1 |
| Xylanimonas allomyrinae |
1/ 1 |
| Isoptericola |
Isoptericola dokdonensis |
1/ 1 |
| Cellulosimicrobium |
Cellulosimicrobium sp. TH-20 |
1/ 1 |
| Cellulosimicrobium cellulans |
1/ 1 |
| Cellulosimicrobium protaetiae |
1/ 1 |
| Cellulomonas |
Cellulomonas flavigena |
1/ 1 |
| Cellulomonas fimi |
1/ 1 |
| Cellulomonas shaoxiangyii |
1/ 1 |
| Cellulomonas sp. JZ18 |
1/ 1 |
| Cellulomonas sp. H30R-01 |
1/ 1 |
| Cellulomonas iranensis |
1/ 1 |
| Cellulomonas dongxiuzhuiae |
1/ 1 |
| Cellulomonas wangleii |
1/ 1 |
| Cellulomonas fengjieae |
1/ 1 |
| Cellulomonas wangsupingiae |
1/ 1 |
| Cellulomonas chengniuliangii |
1/ 1 |
| Cellulomonas xiejunii |
1/ 1 |
| Oerskovia |
Oerskovia sp. KBS0722 |
1/ 1 |
| Brevibacterium |
Brevibacterium luteolum |
1/ 1 |
| Georgenia |
Georgenia yuyongxinii |
1/ 1 |
| Microlunatus |
Microlunatus elymi |
1/ 1 |
| Tessaracoccus |
Tessaracoccus flavescens |
1/ 1 |
| Nonomuraea |
Nonomuraea coxensis |
1/ 1 |
| Micromonospora |
Micromonospora maris |
1/ 1 |
| Schaalia |
Schaalia meyeri |
1/ 1 |
| Schaalia turicensis |
1/ 1 |
| Actinomyces |
Actinomyces israelii |
1/ 1 |
| Actinomyces weissii |
1/ 1 |
| Nanchangia |
Nanchangia anserum |
1/ 1 |
| Pauljensenia |
Pauljensenia hongkongensis |
1/ 1 |
| Bifidobacterium |
Bifidobacterium longum |
11/13 |
| Bifidobacterium animalis |
1/13 |
| Bifidobacterium bifidum |
2/ 3 |
| Bifidobacterium breve |
9/ 9 |
| Bifidobacterium pseudolongum |
1/ 1 |
| Bifidobacterium scardovii |
1/ 1 |
| Bifidobacterium pullorum |
1/ 1 |
| Bifidobacterium eulemuris |
1/ 1 |
| Bifidobacterium subtile |
1/ 1 |
| Gardnerella |
Gardnerella vaginalis |
1/ 4 |
| Bombiscardovia |
Bombiscardovia apis |
1/ 1 |
| Bombiscardovia nodaiensis |
1/ 1 |
| Chloroflexota |
Herpetosiphon |
Herpetosiphon aurantiacus |
1/ 1 |
| Pelolinea |
Pelolinea submarina |
1/ 1 |
| |
Anaerolineaceae bacterium oral taxon 439 |
1/ 1 |
| Candidatus Promineifilum |
Candidatus Promineifilum breve |
1/ 1 |
| Ktedonosporobacter |
Ktedonosporobacter rubrisoli |
1/ 1 |
| Deinococcota |
Deinococcus |
Deinococcus soli (ex Cha et al. 2016) |
1/ 1 |
| Deinococcus actinosclerus |
1/ 1 |
| Deinococcus puniceus |
1/ 1 |
| Deinococcus aetherius |
1/ 1 |
| Deinococcus aquaticus |
1/ 1 |
| Verrucomicrobiota |
Ereboglobus |
Ereboglobus luteus |
1/ 1 |
| Spirochaetota |
Treponema |
Treponema succinifaciens |
1/ 1 |
| Treponema brennaborense |
1/ 1 |
| Treponema primitia |
1/ 1 |
| Treponema phagedenis |
1/ 1 |
| Sphaerochaeta |
Sphaerochaeta globosa |
1/ 1 |
| Sphaerochaeta pleomorpha |
1/ 1 |
| Sphaerochaeta associata |
1/ 1 |
| Parasphaerochaeta |
Parasphaerochaeta coccoides |
1/ 1 |
| Breznakiella |
Breznakiella homolactica |
1/ 1 |
| Leptospira |
Leptospira biflexa |
2/ 2 |
| Fusobacteriota |
Fusobacterium |
Fusobacterium mortiferum |
1/ 2 |
| Pseudoleptotrichia |
Pseudoleptotrichia goodfellowii |
1/ 1 |
| Synergistota |
Cloacibacillus |
Cloacibacillus porcorum |
1/ 1 |
| Gemmatimonadota |
Gemmatimonas |
Gemmatimonas aurantiaca |
1/ 1 |
| Gemmatimonas phototrophica |
1/ 1 |
| Bacteroidota |
Bacteroides |
Bacteroides fragilis |
4/ 5 |
| Bacteroides cellulosilyticus |
1/ 1 |
| Bacteroides intestinalis |
1/ 1 |
| Bacteroides eggerthii |
1/ 1 |
| Bacteroides nordii |
1/ 1 |
| Bacteroides humanifaecis |
1/ 1 |
| Bacteroides faecium |
1/ 1 |
| Bacteroides salyersiae |
1/ 1 |
| Bacteroides finegoldii |
1/ 1 |
| Fermentimonas |
Fermentimonas caenicola |
1/ 1 |
| Proteiniphilum |
Proteiniphilum saccharofermentans |
1/ 1 |
| Dysgonomonas |
Dysgonomonas sp. HDW5A |
1/ 1 |
| Dysgonomonas sp. HDW5B |
1/ 1 |
| Parabacteroides |
Parabacteroides distasonis |
1/ 1 |
| Parabacteroides sp. CT06 |
1/ 1 |
| Parabacteroides goldsteinii |
1/ 1 |
| Parabacteroides johnsonii |
1/ 1 |
| Parabacteroides faecis |
1/ 1 |
| Duncaniella |
Duncaniella sp. B8 |
1/ 1 |
| Duncaniella sp. C9 |
1/ 1 |
| Barnesiella |
Barnesiella viscericola |
1/ 1 |
| Odoribacter |
Odoribacter splanchnicus |
1/ 1 |
| Butyricimonas |
Butyricimonas virosa |
1/ 1 |
| Butyricimonas faecihominis |
1/ 1 |
| Alistipes |
Alistipes finegoldii |
1/ 1 |
| Alistipes onderdonkii |
1/ 1 |
| Alistipes dispar |
1/ 1 |
| Alistipes indistinctus |
1/ 1 |
| Alistipes senegalensis |
1/ 1 |
| |
Bacteroidales bacterium CF |
1/ 1 |
| Draconibacterium |
Draconibacterium orientale |
1/ 1 |
| Xiashengella |
Xiashengella succiniciproducens |
1/ 1 |
| Pseudopedobacter |
Pseudopedobacter saltans |
1/ 1 |
| Sphingobacterium |
Sphingobacterium sp. 21 |
1/ 1 |
| Sphingobacterium sp. ML3W |
1/ 1 |
| Sphingobacterium mizutaii |
1/ 1 |
| Sphingobacterium psychroaquaticum |
1/ 1 |
| Sphingobacterium sp. CZ-2 |
1/ 1 |
| Sphingobacterium sp. dk4302 |
1/ 1 |
| Sphingobacterium sp. DR205 |
1/ 1 |
| Sphingobacterium thalpophilum |
1/ 1 |
| Sphingobacterium spiritivorum |
1/ 1 |
| Sphingobacterium faecium |
1/ 2 |
| Sphingobacterium bambusae |
1/ 1 |
| Anseongella |
Anseongella ginsenosidimutans |
1/ 1 |
| Olivibacter |
Olivibacter sp. LS-1 |
1/ 1 |
| Cytophaga |
Cytophaga hutchinsonii |
1/ 1 |
| Leadbetterella |
Leadbetterella byssophila |
1/ 1 |
| Hymenobacter |
Hymenobacter qilianensis |
1/ 1 |
| |
Flammeovirgaceae bacterium 311 |
1/ 1 |
| Flavobacterium |
Flavobacterium dauae |
1/ 1 |
| Elizabethkingia |
Elizabethkingia anophelis |
3/ 3 |
| Elizabethkingia ursingii |
1/ 1 |
| Elizabethkingia bruuniana |
1/ 1 |
| Elizabethkingia sp. 2-6 |
1/ 1 |
| Chryseobacterium |
Chryseobacterium sp. T16E-39 |
1/ 1 |
| Empedobacter |
Empedobacter brevis |
1/ 1 |
| Empedobacter falsenii |
1/ 1 |
| |
Bacteroidetes bacterium UKL13-3 |
1/ 1 |
| Archaea |
Euryarchaeota |
Pyrococcus |
Pyrococcus kukulkanii |
1/ 1 |
| Thermococcus |
Thermococcus guaymasensis |
1/ 1 |
| Thermococcus chitonophagus |
1/ 1 |
| Methanimicrococcus |
Methanimicrococcus hongohii |
1/ 1 |
| Methanimicrococcus stummii |
1/ 1 |
| Candidatus Thermoplasmatota |
Ferroplasma |
Ferroplasma acidarmanus |
1/ 1 |
| Ferroplasma acidiphilum |
1/ 1 |
| Thermoproteota |
Metallosphaera |
Metallosphaera tengchongensis |
1/ 1 |
| Acidianus |
Acidianus brierleyi |
1/ 2 |
| Acidianus ambivalens |
1/ 2 |
| Candidatus Lokiarchaeota |
Candidatus Lokiarchaeum |
Candidatus Lokiarchaeum sp. GC14_75 |
1/ 1 |
| Candidatus Lokiarchaeum ossiferum |
1/ 1 |
| Candidatus Prometheoarchaeum |
Candidatus Prometheoarchaeum syntrophicum |
1/ 1 |