KEGG   NETWORK: N01140
Entry
N01140                      Network                                
Name
TBK1-mediated autophagosome formation
Definition
TBK1 -> (SQSTM1,OPTN,NDP52,TAX1BP1,NBR1) == LC3-II
  Expanded
29110 -> (8878,10133,10241,8887,4077) == ((84557,81631,643246,440738)+C00350)
Class
nt06536 Mitophagy
nt06464 Amyotrophic lateral sclerosis
nt06466 Pathways of neurodegeneration
Type
Reference
Pathway
hsa04137  Mitophagy - animal
Gene
29110  TBK1; TANK binding kinase 1
8878  SQSTM1; sequestosome 1
10133  OPTN; optineurin
10241  CALCOCO2; calcium binding and coiled-coil domain 2
8887  TAX1BP1; Tax1 binding protein 1
4077  NBR1; NBR1 autophagy cargo receptor
84557  MAP1LC3A; microtubule associated protein 1 light chain 3 alpha
81631  MAP1LC3B; microtubule associated protein 1 light chain 3 beta
643246  MAP1LC3B2; microtubule associated protein 1 light chain 3 beta 2
440738  MAP1LC3C; microtubule associated protein 1 light chain 3 gamma
Metabolite
C00350  Phosphatidylethanolamine
Reference
  Authors
Herhaus L, Dikic I
  Title
Expanding the ubiquitin code through post-translational modification.
  Journal
EMBO Rep 16:1071-83 (2015)
DOI:10.15252/embr.201540891
Reference
  Authors
Kiriyama Y, Nochi H
  Title
The Function of Autophagy in Neurodegenerative Diseases.
  Journal
Int J Mol Sci 16:26797-812 (2015)
DOI:10.3390/ijms161125990
Reference
  Authors
Richter B, Sliter DA, Herhaus L, Stolz A, Wang C, Beli P, Zaffagnini G, Wild P, Martens S, Wagner SA, Youle RJ, Dikic I
  Title
Phosphorylation of OPTN by TBK1 enhances its binding to Ub chains and promotes selective autophagy of damaged mitochondria.
  Journal
Proc Natl Acad Sci U S A 113:4039-44 (2016)
DOI:10.1073/pnas.1523926113
Reference
  Authors
Matsumoto G, Shimogori T, Hattori N, Nukina N
  Title
TBK1 controls autophagosomal engulfment of polyubiquitinated mitochondria through p62/SQSTM1 phosphorylation.
  Journal
Hum Mol Genet 24:4429-42 (2015)
DOI:10.1093/hmg/ddv179
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