Lotus japonicus: Lj5g3v2290070.2
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Entry
Lj5g3v2290070.2 CDS
T04348
Symbol
Lj5g3v2290070.2
Name
(Kazusa) -
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
lja
Lotus japonicus
Pathway
lja03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Lj5g3v2290070.2 (Lj5g3v2290070.2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
Lj5g3v2290070.2 (Lj5g3v2290070.2)
Enzymes [BR:
lja01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
Lj5g3v2290070.2 (Lj5g3v2290070.2)
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
Lj5g3v2290070.2 (Lj5g3v2290070.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
nSTAND3
CbiA
AAA_22
SRPRB
AAA_29
FtsK_SpoIIIE
ATP_bind_1
Motif
LinkDB
All DBs
AA seq
439 aa
AA seq
DB search
MAYGGGAGAGSGSGAVAGGSSTIKQVKLERESELRIEVGNDAPLRLRLLNGTAEIFGTEL
PPEIWLNFPPRLKFAVFTWYGATIEMDGSTETDYTADETPMVSYVNVHAVLEGRRSRAKA
SPSDDPESSQGPRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTFIDLDIGQGSITIPGCI
AATPIEMPIDPVEGIPLEIPLVYFHGHSAPSNNTAEIYRVIVKELAGILERQFAGNAESR
AAGMVINTMGWIEGLGYELLLHSIRTFKANVVLVLGQEKLCSMLKNELKGEPKVDVVKLQ
RSGGVVSRNSKVRQNARSYKIREYFYGLGNDLSPHSNIANFSDLFVYRIGGGPQAPRSAL
PIGAEPAADPTRLVPVNINHDLLHAVLAVSFAKEPDEIISSNVAGFIYVTDIDIQRKKIT
YLAPSAGELPSKYLIIGNI
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggcgtatggtggtggtgcgggtgcaggttcaggttcaggtgcagttgcaggtggttcg
agtacaattaagcaagtcaaattggaaagagaaagcgaactgagaattgaagtcggtaac
gacgcacctcttcgccttcgactccttaacggcactgctgagattttcggcactgaactc
ccccctgaaatctggctcaatttccctcccaggctcaagtttgctgtgtttacttggtac
ggtgcgacgattgaaatggatggtagtaccgagactgattatactgcggacgagacgccg
atggttagctatgtaaatgtgcatgctgtgttagaagggagaagaagtcgagctaaggct
tcgccttcagatgatcctgagtcttcgcagggccctagggtgattgttgtaggacctaca
gactctggaaagagtaccttgtcaaggatgcttcttagttgggcagctaaacaaggttgg
aagcctacttttattgacctagatattggccaaggatctataacaattcctggatgcatt
gctgctactccaattgaaatgcccattgatcccgtggagggaatccctcttgaaattcct
cttgtttactttcacgggcactcagctccaagtaataatactgccgagatatatagagtt
attgtcaaggagcttgcggggatactcgagagacaatttgctggaaatgctgagtcccga
gctgcaggaatggtgataaatactatgggatggatagagggactaggctatgaattgcta
ttgcattcaatccgtacattcaaggccaatgtggtccttgttttgggtcaggaaaaactg
tgcagcatgctcaaaaacgagctcaagggggagcctaaagtagatgttgtgaaacttcag
aggtcaggcggcgttgtatctaggaactcaaaagtccgtcaaaatgccagaagttataag
ataagggaatacttctatggccttggaaatgacctttctccacattctaatattgcaaat
tttagtgacttgtttgtttatcgaattggtggtgggccacaggcccctcgctcagccttg
ccgattggtgcagaacctgctgcagatccaaccagactcgttcctgtaaatataaatcat
gatttgcttcatgcagtccttgctgtctcatttgccaaggaacccgatgagatcatttca
agcaatgttgctggctttatctacgtaacagacattgacattcagagaaagaagataacc
taccttgcaccatctgctggagaacttccaagcaagtatttgattattggaaatata
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