Sordaria macrospora: SMAC_05005 Help Entry SMAC_05005        CDS       T01610                                  Name (RefSeq) uncharacterized protein   KO K03006   DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] Organism smp  Sordaria macrospora Pathway smp03020   RNA polymerase smp03420   Nucleotide excision repair Brite KEGG Orthology (KO) [BR:smp00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     SMAC_05005   09124 Replication and repair    03420 Nucleotide excision repair     SMAC_05005  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:smp03021]     SMAC_05005    03400 DNA repair and recombination proteins [BR:smp03400]     SMAC_05005 Enzymes [BR:smp01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.6  DNA-directed RNA polymerase      SMAC_05005 Transcription machinery [BR:smp03021]  Eukaryotic type   RNA polymerase II system    RNA polymerase II     Core subunits      SMAC_05005 DNA repair and recombination proteins [BR:smp03400]  Eukaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase II complex       SMAC_05005 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Motif Other DBs NCBI-GeneID:  10810543 NCBI-ProteinID:  XP_003352890 UniProt:  F7VUQ0 LinkDB All DBs Position Unknown AA seq 1761 aa AA seqDB search MANLYFAHSSAPLRTVKEIQFGLLSPEEIKSMSVAHIVYPETMDETRTKPRDGGLNDPLL GSVDRQFKCKTCTENMSECPGHFGHIELARPVYHPGFIKRVKKILEIVCHNCSKVLADRN DKEFAAAMKIRDPKVRFNRVWAVCKKKRRCDNEVIKKSDDDEFNPLADAKGELPGHGGCG NDHPTVRQQALTLYAQFDTKDEEGVKTKEKKIITPEMALTILHNMSESDMIDIGVNISQA RPEWMIVTVLPVPPPPVRPSISMDGTGTGLRNEDDLTYKLGDIIRANGNVRQAIQEGSPA HIIHDFEGLLQYHVATYMDNDIAGQPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVD FSARTVITGDANISLDEVGVPRSIARTLTYPETVTPYNIGKLTQYVQNGPNEHPGAKYVI RSDGSRVDLRHQRRTGPLQLEYGWKVERHLIDGDYIIFNRQPSLHKESMMGHRVKVMPYS TFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRNGPLMGIVQD TLAGAYKLCRRDVFLTKEEVMNVMLWVPEWDGIIPIPAILKPRPRWTGKQIISMVIPKII NLKNLDEDDGECPLKDKGILIQQGEVIFGLMTKKIVGAASGGIIHLCYNELGPSGAMDFL NGCQRVVNYWLLHNGHSIGIGDTIPDAATIAKVQTHIDDAKAEVKMLTDQATNNELEPLP GMNIRETFENKVSKALNTARDKAGTTTEGSLKDLNNAVTMALSGSKGSSINISQMTALVG QQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLID TAVKTAETGYIQRRLVKALEDSAAQYDGTVRNSLGDIIQFVYGEDGLDGIAIENQSVDHF TISNKAFDKRYRLDVMDEEVSSGELEALEYGKEITSDPTVQELLDQEYEQLTVDRQMLRV IQRRKGNNDTKMQLPLNIIRIIDTAKKLFKVDETARSDLTPKDVIPLVKAMLDRMIVVRG DDPISKEADYNATILFKAQLRSRLAFKRLAVQDRINKLAFNHILGELENRWSRSMVSPGE MVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVASNIKTPSMMVYLDS NAATQEEAKKMRSAVEHTSLRSVTAVTEIYYDPDIQSTNIPEDYDLVESYFLIPDQSGDE PDPIENQSRWLLRITLDRQKMLDKGLRVEDVAHRIKEVYKKDVAVVFSDNNAEEMVIRIR VIKADDDKDEDGNKIIEDDVMLKRLEKHLLDGCTLRGVEGIERAFLNKGVKLIEAKDGSM KHSKVDDDCQEWYLDTQGTSLREVLTVEGVDTKRTTTNDLWQVVDVFGIEGARAALMHEL TAVLAFDGSYVNHRHLALLCDVMTYRGSIAAVTRHGINRADTGALMRCSFEETVEILLEA AAVGELDDCRGISENVMLGQMAPMGTGAFDVLLDPKMLETVISDNSRMGLMPGMTVKGSQ LDGAATPYDTGSPMADSGFLGSYSPTMGNFSPIQGAGSDSPTNNGFGTDYGGVSGYGSGT SYSSATSPRATSPFTPTSPFSYGGYSPSSPAAGYSPSSPLLDSSGRFASSPQFSPSSPSF SPTSPMLRPGSPTSPSYSPTSPSYSPASPAAARYSPTSPAQQFSPTSPSYSPTSPSYSPA SPAFQATSPSYSPASPTWSPTSPDAYSPTSPSFQRSPGQQLSPNSPTGYSPTSPQYSPRT PGRNNSGGNGDSYSPTSPSND NT seq 5286 nt NT seq  +upstreamnt  +downstreamnt atggcgaacctatactttgcgcactcgagtgcgcccttgcggaccgtcaaggaaatccag tttggtctgctgtcgcccgaggagatcaagagcatgagtgtggcccacatcgtctaccca gagaccatggacgagaccaggacgaaaccccgcgacggcggtctcaacgaccctctcctg ggctccgtagatcgtcagttcaagtgcaaaacatgtaccgagaacatgtccgagtgcccc ggccatttcggtcacatcgagctggcccgacccgtctaccatccaggcttcatcaagcgt gtcaagaagatattggagattgtctgccacaactgcagcaaggttcttgctgacagaaat gacaaagagttcgcggccgccatgaagatccgcgatcccaaggtccgcttcaaccgagta tgggctgtgtgcaagaagaagaggagatgtgacaacgaggttatcaagaagagcgacgat gatgaattcaacccgctcgccgacgccaagggcgagctacctggccacggcggctgcggc aacgaccaccccaccgtccgccagcaggccctcaccctctacgcccagttcgataccaag gatgaggagggcgtcaagaccaaggagaagaagatcatcactcccgagatggcgctcacc atcctgcacaacatgtccgagtctgacatgatcgacatcggtgtcaacatttctcaagct cgccctgagtggatgattgtcaccgttctgcccgttccgccacctccagtccgtcccagc atttccatggacggtaccggcaccggtctccggaacgaagacgatttgacctacaagctc ggcgatatcattcgagcgaacggcaacgttcgacaggccattcaggagggttctccggct cacatcatccatgattttgagggcctccttcagtaccacgttgccacctacatggacaac gatattgctggtcagccacaagccttgcaaaagagtggtcgtcctgtcaaggccatccgt gcccgtctcaagggcaaggaaggtcgtctacgtggtaacttgatgggtaagcgtgtcgac ttctctgcccgtacagttatcacaggtgatgccaacatctcgctggatgaggtcggtgtg ccccgtagtatcgcccgcaccctcacttatcccgagaccgtcaccccttacaacatcggc aagctcacccagtacgttcaaaacggccctaacgagcacccgggtgccaagtacgttatc cgctccgatggcagccgtgttgatcttcgccatcagaggcggacaggcccgctgcagctg gaatatggctggaaggttgagcgccatcttatcgatggtgattacatcatcttcaaccgt cagccctctttgcacaaagaatccatgatgggtcatcgtgtcaaggtcatgccctactcg accttcagacttaacctttccgtcacatctccatacaacgccgatttcgacggtgatgaa atgaaccttcacgttcctcaaaccgaagaaacacgcgctgaagtcaaggagctctgcatg gttcctctcaacatcgtctccccgcagcgtaacggcccgctcatgggtatcgtgcaggac actttggctggtgcttacaagctttgtcgtcgtgatgtcttccttacgaaggaggaggtc atgaacgtcatgctctgggtccccgagtgggacggcatcattcccatccctgcgatcctc aagcctcgtcctcgctggactggtaagcagatcatcagcatggttattcccaagatcatc aacctcaagaacctcgacgaggatgatggcgagtgtcctcttaaggacaagggtattttg atccagcaaggtgaggtgattttcggcttgatgaccaagaagattgtgggtgctgctagt ggcggtatcatccatctctgctacaacgagttgggtcctagcggtgctatggatttcctc aacggctgccagagagtcgtcaactactggctccttcacaacggtcacagcatcggtatt ggtgacaccattcctgatgctgcgaccatcgccaaggtccagactcacatcgacgatgcc aaggcggaagtcaagatgctcacagaccaggctaccaacaacgagcttgagccattgccc ggtatgaacatccgtgagactttcgaaaacaaggtctccaaggctctcaacacggcccgt gacaaggccggtactaccactgagggcagtttgaaggatcttaacaacgccgtaaccatg gctctgtctggttccaagggttcttccatcaacatttctcagatgactgccttggtcggt cagcagattgttgaaggcaagcgtattcctttcggcttcaagtaccgtaccctgccacat ttcacaaaggacgattactcgcccgaagcccgtggtttcgtcgagaactcgtacctccgt ggtctcactccttcagagttcttcttccatgccatggctggtagagaaggtttgatcgat accgctgtcaagactgccgaaaccggttacatccagcgtcgtttggtcaaggccctcgaa gattccgctgctcagtacgacggtaccgtccgtaattcgctgggtgatatcatccagttc gtctacggtgaagatggccttgatggtattgccatcgaaaaccagtctgtcgatcacttc acgatctccaacaaggctttcgacaagcggtatcgccttgatgtcatggacgaggaggtt tcctcgggcgagcttgaggcgttggaatacggaaaggagatcaccagcgaccccactgtc caggagcttctcgaccaggagtatgaacagcttacggtcgatcgccagatgcttcgcgtc atccagcgcaggaaaggcaacaatgacaccaagatgcagcttccgctcaacatcatccgt atcattgacaccgccaagaagctgttcaaggtggacgagactgctcgcagtgaccttacc cctaaggatgtcattcctctcgtcaaggccatgcttgatcgcatgattgttgtccgaggc gacgatcctatctcgaaggaagctgactacaacgccacgatcctcttcaaggcacagctt cggtctcgcttggcgttcaagcgtcttgctgtccaggacaggatcaacaagctggctttc aaccacattcttggcgagctcgagaaccgttggtcgaggtcgatggtttctcctggtgaa atggttggtgtgttggctgctcagtctatcggtgaacccgctacccagatgacgctcaac actttccatttcgccggtgtgtcctccaagaacgtcacccttggtgtgccgcgtctaaag gaaattctcaacgtcgcatccaacatcaagaccccctccatgatggtgtacctcgactcc aatgctgccacccaggaggaggccaagaagatgcgcagtgctgtagagcacacgagtctt cgctccgttaccgctgtcactgaaatctactacgatcctgatatccaatcgaccaacatc cccgaggattacgatttggttgaatcttacttccttattcccgatcagagcggcgacgag ccagatccaattgagaaccagtctcgttggcttctgagaatcactctcgatcgccagaag atgcttgataagggtctccgtgttgaggatgttgcccatcgtatcaaggaggtttacaag aaggatgttgccgttgtcttctcggacaacaacgctgaagagatggtcatccgtatccgt gtcatcaaggcggacgacgacaaggacgaagatggtaacaagatcattgaagacgatgtc atgctcaagcgtctcgagaagcatcttcttgacggctgcacacttcgtggtgtcgagggc attgagcgtgccttcttgaacaagggtgttaagctgatcgaggccaaggatggctccatg aagcactccaaggtagatgacgactgccaggagtggtaccttgatacacagggtacctcg cttcgtgaggtcttgactgtcgagggtgttgataccaagcgcaccaccaccaacgacttg tggcaggttgtcgacgtcttcggtatcgagggagctcgcgcagctctgatgcacgagttg acggctgtgttggctttcgacggttcgtacgtcaaccatcgccatttggcgcttctttgt gatgtcatgacatacagaggcagtatcgccgccgtcacacgtcacggtatcaaccgtgct gatactggtgctctcatgcgttgctctttcgaggagactgtcgaaattctcctggaagct gccgccgtcggtgagcttgatgactgccgtggtatctctgagaacgtcatgttgggccag atggctcccatgggtactggtgcctttgacgtgctccttgatcccaagatgctggagacc gtcatctctgacaactctcgcatgggtctcatgccgggcatgactgtgaagggcagccag ctggatggtgctgccacgccttatgacacgggctctcctatggctgacagtgggttcctt ggaagctattcccctactatgggcaacttctctcctatccagggcgctgggtcggacagc ccgacgaacaacggcttcggcaccgactacggtggcgttagcggatacggttctggtacc tcctactcttcggctaccagccctcgggcaaccagccccttcacacccacgtcgccattc agctatggcggttactcgccatcgtcgcccgcggctggctactcgcccagctcacctctc ctcgactcttctggtcggttcgcttccagcccacagttcagcccatcgtcgccgtcgttc tcgccaacttcgccgatgctgcgccctggaagcccgaccagtccgagctacagccccacc tccccgagttactcgccagcatcgccagctgccgcccggtactcgcccacctcccccgcc caacaattctccccgacgtcgccgtcatattcccccacgagtccgagctacagcccggcc tcgcccgctttccaggctacctcgccaagctactctccggcttcgcctacctggtcgcca acatcgccggacgcttactcgcccacaagcccgtcgttccagcggtcgcctggtcagcag ctgtcccctaatagcccaacgggttattcgccgacgtcgccgcagtactcgccgcggaca ccgggacgtaataactcggggggcaacggggattcatactctcccacttcgccatcaaat gattaa

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