+D GENES KO #

  KEGG Orthology (KO) - Brucella abortus bv. 9 C68

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:babu00010] D DK53_2193 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D DK53_326 phosphoglucose isomerase family protein K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D DK53_2364 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D DK53_1252 glpX; fructose-1,6-bisphosphatase, class II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37] D DK53_2365 fba; fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D DK53_1127 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D DK53_1673 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D DK53_1674 phosphoglycerate kinase family protein K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D DK53_2190 gpm1; phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D DK53_1122 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D DK53_1692 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D DK53_521 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D DK53_1119 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D DK53_1118 hypothetical protein K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D DK53_1117 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D DK53_3096 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D DK53_1116 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DK53_1846 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DK53_2681 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DK53_142 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D DK53_212 zinc-binding dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D DK53_1051 alcohol dehydrogenase GroES-like domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D DK53_2490 iron-containing alcohol dehydrogenase family protein K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D DK53_848 alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D DK53_211 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_2546 aldA; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_2225 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_210 aldehyde dehydrogenase family protein K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D DK53_2750 AMP-binding enzyme family protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D DK53_1743 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D DK53_854 galm; aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D DK53_73 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D DK53_2009 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] C 00020 Citrate cycle (TCA cycle) [PATH:babu00020] D DK53_1136 gltA; citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1] D DK53_107 acnA; aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3] D DK53_1183 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D DK53_1851 sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D DK53_1850 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D DK53_1116 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DK53_1846 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DK53_2681 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DK53_1852 sucD; succinate-CoA ligase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D DK53_1853 sucC; succinate-CoA ligase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D DK53_1044 succinate CoA transferase family protein K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D DK53_1829 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D DK53_1828 succinate dehydrogenase and fumarate reductase iron-sulfur family protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D DK53_1831 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D DK53_1830 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D DK53_947 hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D DK53_2951 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D DK53_1854 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D DK53_1717 pyc; pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1] D DK53_2009 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D DK53_1119 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D DK53_1118 hypothetical protein K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D DK53_1117 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D DK53_3096 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00030 Pentose phosphate pathway [PATH:babu00030] D DK53_326 phosphoglucose isomerase family protein K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D DK53_2450 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D DK53_2449 pgl; 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31] D DK53_3027 gnd; 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D DK53_846 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D DK53_1672 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D DK53_1737 fsa; fructose-6-phosphate aldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D DK53_997 rpiA; ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D DK53_2795 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase family protein K01621 xfp; xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [EC:4.1.2.9 4.1.2.22] D DK53_3125 rbsK; ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D DK53_73 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D DK53_1090 putative aTP-binding phosphonate metabolism protein K05774 phnN; ribose 1,5-bisphosphokinase [EC:2.7.4.23] D DK53_1489 prs; ribose-phosphate diphosphokinase family protein K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D DK53_2448 edd; phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12] D DK53_3050 eda; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D DK53_853 pfkB carbohydrate kinase family protein K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] D DK53_391 hypothetical protein K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D DK53_2365 fba; fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D DK53_2364 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D DK53_1252 glpX; fructose-1,6-bisphosphatase, class II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37] C 00040 Pentose and glucuronate interconversions [PATH:babu00040] D DK53_2261 short chain dehydrogenase family protein K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127] D DK53_2415 uxaC; uronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12] D DK53_2416 glucuronate isomerase family protein K01812 uxaC; glucuronate isomerase [EC:5.3.1.12] D DK53_2413 uxuA; mannonate dehydratase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8] D DK53_2417 mannitol dehydrogenase Rossmann domain protein K00040 uxuB; fructuronate reductase [EC:1.1.1.57] D DK53_2665 nucleotide sugar dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D DK53_3063 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D DK53_846 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D DK53_564 xylB; xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17] D DK53_563 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5] D DK53_1425 hypothetical protein K09988 lyxA; D-lyxose ketol-isomerase [EC:5.3.1.15] D DK53_2297 dehydratase family protein K22186 xylD; xylonate dehydratase [EC:4.2.1.82] D DK53_216 aldehyde dehydrogenase family protein K22187 xylA; alpha-ketoglutaric semialdehyde dehydrogenase [EC:1.2.1.-] D DK53_2882 FGGY-pentulose kinase family protein K00875 rbtK; D-ribulokinase [EC:2.7.1.47] D DK53_2883 rbtD; ribitol 2-dehydrogenase K00039 rbtD; ribitol 2-dehydrogenase [EC:1.1.1.56] D DK53_2133 hypothetical protein K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] C 00051 Fructose and mannose metabolism [PATH:babu00051] D DK53_128 pfkB carbohydrate kinase family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D DK53_2813 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D DK53_2812 phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein K01840 manB; phosphomannomutase [EC:5.4.2.8] D DK53_554 phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein K01840 manB; phosphomannomutase [EC:5.4.2.8] D DK53_555 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D DK53_542 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D DK53_2133 hypothetical protein K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] D DK53_253 hypothetical protein K18334 fucD; L-fuconate dehydratase [EC:4.2.1.68] D DK53_251 bdh2; 3-hydroxybutyrate dehydrogenase type 2 K18335 E1.1.1.434; 2-dehydro-3-deoxy-L-fuconate 4-dehydrogenase [EC:1.1.1.434] D DK53_2364 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D DK53_1252 glpX; fructose-1,6-bisphosphatase, class II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37] D DK53_563 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5] D DK53_2365 fba; fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D DK53_1127 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D DK53_2013 PTS system fructose IIA component family protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D DK53_856 HAD hydrolase, IA, variant 1 family protein K19270 hxpA; mannitol-1-/sugar-/sorbitol-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50] C 00052 Galactose metabolism [PATH:babu00052] D DK53_854 galm; aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D DK53_1054 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D DK53_3063 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D DK53_73 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D DK53_2193 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D DK53_2296 hypothetical protein K00035 gal; D-galactose 1-dehydrogenase [EC:1.1.1.48] D DK53_2298 2-keto-3-deoxy-galactonokinase family protein K00883 dgoK; 2-dehydro-3-deoxygalactonokinase [EC:2.7.1.58] D DK53_2299 dihydroorotate dehydrogenase family protein K01631 dgoA; 2-dehydro-3-deoxyphosphogalactonate aldolase [EC:4.1.2.21] C 00053 Ascorbate and aldarate metabolism [PATH:babu00053] D DK53_2665 nucleotide sugar dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D DK53_211 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_2546 aldA; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_2225 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00500 Starch and sucrose metabolism [PATH:babu00500] D DK53_3063 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D DK53_73 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D DK53_2193 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D DK53_326 phosphoglucose isomerase family protein K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D DK53_128 pfkB carbohydrate kinase family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:babu00520] D DK53_873 hypothetical protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D DK53_2326 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D DK53_2122 badF/BadG/BcrA/BcrD ATPase family protein K18676 gspK; glucosamine kinase [EC:2.7.1.8] D DK53_2692 badF/BadG/BcrA/BcrD ATPase family protein K18676 gspK; glucosamine kinase [EC:2.7.1.8] D DK53_128 pfkB carbohydrate kinase family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D DK53_2631 glmS; glutamine-fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D DK53_2325 SIS domain protein K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D DK53_1639 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D DK53_2630 glmU; UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D DK53_917 hypothetical protein K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170] D DK53_2017 tRNA threonylcarbamoyl adenosine modification protein YjeE K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221] D DK53_2018 nucleotidyl transferase family protein K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99] D DK53_297 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D DK53_1396 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D DK53_2769 putative N-acetylmannosamine-6-phosphate 2-epimerase domain protein K13967 nanEK; N-acetylmannosamine-6-phosphate 2-epimerase / N-acetylmannosamine kinase [EC:5.1.3.9 2.7.1.60] D DK53_2668 3-beta hydroxysteroid dehydrogenase/isomerase family protein K08678 UXS1; UDP-glucuronate decarboxylase [EC:4.1.1.35] D DK53_2667 galE; UDP-glucose 4-epimerase GalE K12448 UXE; UDP-arabinose 4-epimerase [EC:5.1.3.5] D DK53_2193 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D DK53_73 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D DK53_3063 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D DK53_2665 nucleotide sugar dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D DK53_1054 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D DK53_2013 PTS system fructose IIA component family protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D DK53_326 phosphoglucose isomerase family protein K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D DK53_2812 phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein K01840 manB; phosphomannomutase [EC:5.4.2.8] D DK53_554 phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein K01840 manB; phosphomannomutase [EC:5.4.2.8] D DK53_555 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D DK53_2813 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D DK53_542 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D DK53_541 perosamine synthetase K13010 per; perosamine synthetase [EC:2.6.1.102] C 00620 Pyruvate metabolism [PATH:babu00620] D DK53_2750 AMP-binding enzyme family protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D DK53_1743 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D DK53_1119 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D DK53_1118 hypothetical protein K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D DK53_1117 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D DK53_3096 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D DK53_1116 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DK53_1846 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DK53_2681 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DK53_212 zinc-binding dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D DK53_1051 alcohol dehydrogenase GroES-like domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D DK53_2490 iron-containing alcohol dehydrogenase family protein K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D DK53_848 alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D DK53_142 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D DK53_2794 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D DK53_1692 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D DK53_1949 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D DK53_900 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D DK53_899 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D DK53_2023 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D DK53_211 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_2546 aldA; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_2225 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_210 aldehyde dehydrogenase family protein K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D DK53_1044 succinate CoA transferase family protein K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D DK53_1966 coenzyme A transferase family protein K01026 pct; propionate CoA-transferase [EC:2.8.3.1] D DK53_2318 nitronate monooxygenase family protein K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] D DK53_1378 hypothetical protein K00102 LDHD; D-lactate dehydrogenase (cytochrome) [EC:1.1.2.4] D DK53_1247 gloA; lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D DK53_71 glyoxalase/Bleomycin resistance/Dioxygenase superfamily protein K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D DK53_1861 gloB; hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D DK53_1476 metallo-beta-lactamase superfamily protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D DK53_23 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D DK53_157 phosphate acetyl/butaryl transferase family protein K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D DK53_158 malic enzyme, NAD binding domain protein K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D DK53_1005 dme; NAD-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D DK53_1717 pyc; pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1] D DK53_1854 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D DK53_947 hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D DK53_2951 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D DK53_2009 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D DK53_521 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D DK53_1601 glcB; malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9] D DK53_2752 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DK53_1709 phbA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DK53_2433 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DK53_685 HMGL-like family protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D DK53_1522 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:babu00630] D DK53_1565 aceA; isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1] D DK53_2750 AMP-binding enzyme family protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D DK53_1743 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D DK53_1601 glcB; malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9] D DK53_1854 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D DK53_1136 gltA; citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1] D DK53_107 acnA; aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3] D DK53_2752 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DK53_1709 phbA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DK53_2433 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DK53_819 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D DK53_1173 pccA; propionyl-CoA carboxylase, alpha subunit K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3] D DK53_1172 pccB; propionyl-CoA carboxylase, beta subunit K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15] D DK53_1175 hypothetical protein K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D DK53_2963 FAD binding domain protein K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14] D DK53_2962 FAD binding domain protein K11472 glcE; glycolate dehydrogenase FAD-binding subunit [EC:1.1.99.14] D DK53_2961 4Fe-4S binding domain protein K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14] D DK53_2806 katA; catalase K03781 katE; catalase [EC:1.11.1.6] D DK53_10 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein K00015 gyaR; glyoxylate reductase [EC:1.1.1.26] D DK53_23 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D DK53_329 HAD hydrolase, IA, variant 1 family protein K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D DK53_990 HAD hydrolase, IA, variant 1 family protein K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D DK53_996 gph; phosphoglycolate phosphatase, bacterial K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D DK53_2460 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DK53_2491 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DK53_992 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DK53_766 aminotransferase class I and II family protein K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D DK53_2498 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D DK53_2496 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D DK53_1116 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DK53_1846 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DK53_2681 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DK53_2497 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D DK53_391 hypothetical protein K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D DK53_3050 eda; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D DK53_2328 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D DK53_2307 hutG; N-formylglutamate deformylase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68] C 00640 Propanoate metabolism [PATH:babu00640] D DK53_2750 AMP-binding enzyme family protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D DK53_1743 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D DK53_1676 AMP-binding enzyme family protein K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17] D DK53_1966 coenzyme A transferase family protein K01026 pct; propionate CoA-transferase [EC:2.8.3.1] D DK53_2794 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D DK53_2685 bkdA1; 2-oxoisovalerate dehydrogenase subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D DK53_2684 bkdA2; 2-oxoisovalerate dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D DK53_2159 dehydrogenase E1 component family protein K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D DK53_3098 dehydrogenase E1 component family protein K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D DK53_2683 bkdB; lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D DK53_1116 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DK53_1846 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DK53_2681 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DK53_2753 hypothetical protein K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D DK53_17 putative enoyl-CoA hydratase echA8 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D DK53_2156 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D DK53_2434 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D DK53_1949 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D DK53_900 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D DK53_899 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D DK53_2023 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D DK53_2312 aminotransferase class-III family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D DK53_1173 pccA; propionyl-CoA carboxylase, alpha subunit K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3] D DK53_1172 pccB; propionyl-CoA carboxylase, beta subunit K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15] D DK53_819 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D DK53_1175 hypothetical protein K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D DK53_1853 sucC; succinate-CoA ligase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D DK53_1852 sucD; succinate-CoA ligase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D DK53_1761 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D DK53_2194 mgsA; methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3] C 00650 Butanoate metabolism [PATH:babu00650] D DK53_2752 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DK53_1709 phbA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DK53_2433 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DK53_2922 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D DK53_2157 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D DK53_1890 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D DK53_2434 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D DK53_17 putative enoyl-CoA hydratase echA8 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D DK53_2156 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D DK53_1964 3-hydroxypropionyl-coenzyme A dehydratase K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17] D DK53_2753 hypothetical protein K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D DK53_1829 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D DK53_1828 succinate dehydrogenase and fumarate reductase iron-sulfur family protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D DK53_1831 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D DK53_1830 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D DK53_2820 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D DK53_200 aminotransferase class-III family protein K16871 POP2; 4-aminobutyrate---pyruvate transaminase [EC:2.6.1.96] D DK53_2781 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D DK53_2168 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D DK53_1595 succinate-semialdehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D DK53_1044 succinate CoA transferase family protein K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D DK53_32 HMGL-like family protein K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D DK53_36 acetoacetate-CoA ligase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16] D DK53_1715 3-hydroxybutyrate dehydrogenase family protein K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30] D DK53_1359 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D DK53_2293 thiamine pyrophosphate enzyme, central domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D DK53_1358 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] C 00660 C5-Branched dibasic acid metabolism [PATH:babu00660] D DK53_1359 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D DK53_2293 thiamine pyrophosphate enzyme, central domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D DK53_1358 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D DK53_2975 coA-transferase III family protein K18289 ict-P; itaconate CoA-transferase [EC:2.8.3.- 2.8.3.22] D DK53_1853 sucC; succinate-CoA ligase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D DK53_1852 sucD; succinate-CoA ligase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D DK53_1833 leuC; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D DK53_2355 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D DK53_2348 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:babu00562] D DK53_2933 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D DK53_1658 suhB; extragenic suppressor protein suhB K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D DK53_2504 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D DK53_2510 idhA; inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D DK53_2506 xylose isomerase-like TIM barrel family protein K03335 iolE; inosose dehydratase [EC:4.2.1.44] D DK53_2507 thiamine pyrophosphate enzyme, central domain protein K03336 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22] D DK53_2505 kduI/IolB family protein K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30] D DK53_2508 pfkB carbohydrate kinase family protein K03338 iolC; 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92] D DK53_1761 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D DK53_1127 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:babu00190] D DK53_803 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 family protein K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D DK53_804 NADH-quinone oxidoreductase, B subunit K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D DK53_805 nqo5; NADH-quinone oxidoreductase chain 5 K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2] D DK53_806 nuoD; NADH dehydrogenase (quinone), D subunit K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2] D DK53_807 nuoE; NADH-quinone oxidoreductase, E subunit K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D DK53_808 nuoF; NADH oxidoreductase (quinone), F subunit K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D DK53_809 nuoG; NADH dehydrogenase (quinone), G subunit K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2] D DK53_810 NADH dehydrogenase family protein K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D DK53_811 NADH-quinone oxidoreductase, chain I family protein K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D DK53_812 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2] D DK53_813 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L family protein K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2] D DK53_814 proton-translocating NADH-quinone oxidoreductase, chain L family protein K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D DK53_815 proton-translocating NADH-quinone oxidoreductase, chain M family protein K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D DK53_816 proton-translocating NADH-quinone oxidoreductase, chain N family protein K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D DK53_2722 FAD dependent oxidoreductase family protein K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D DK53_1829 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D DK53_1828 succinate dehydrogenase and fumarate reductase iron-sulfur family protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D DK53_1831 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D DK53_1830 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D DK53_1500 petA; ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D DK53_1499 hypothetical protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D DK53_1498 cytochrome C1 family protein K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D DK53_491 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D DK53_62 cyoD; cytochrome o ubiquinol oxidase subunit IV K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV D DK53_494 ctaE; cytochrome c oxidase subunit 3 K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D DK53_60 cytochrome C and Quinol oxidase polypeptide I family protein K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D DK53_490 ctaD; cytochrome c oxidase, subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D DK53_489 coxB; cytochrome c oxidase, subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D DK53_492 ctaG; cytochrome c oxidase assembly protein CtaG K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D DK53_787 cytochrome oxidase assembly family protein K02259 COX15; heme a synthase [EC:1.17.99.9] D DK53_398 ccoN; cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D DK53_397 ccoO; cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D DK53_396 cbb3-type cytochrome oxidase component FixQ family protein K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV D DK53_395 ccoP; cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D DK53_61 cyoC; cytochrome o ubiquinol oxidase, subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III D DK53_59 cytochrome C and Quinol oxidase polypeptide I family protein K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3] D DK53_58 cyoA; ubiquinol oxidase, subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3] D DK53_2696 bacterial Cytochrome Ubiquinol Oxidase family protein K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D DK53_2695 cydB; cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D DK53_2694 cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7] D DK53_2968 cycA; D-serine/D-alanine/glycine transporter K08738 CYC; cytochrome c D DK53_56 cytochrome c family protein K08738 CYC; cytochrome c D DK53_1733 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D DK53_1731 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D DK53_1732 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D DK53_1734 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D DK53_1730 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D DK53_414 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D DK53_416 plant ATP synthase F0 family protein K02109 ATPF0B; F-type H+-transporting ATPase subunit b D DK53_417 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D DK53_415 ATP synthase subunit C family protein K02110 ATPF0C; F-type H+-transporting ATPase subunit c D DK53_1914 ppa; inorganic pyrophosphatase:Bacterial/Archaeal inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] D DK53_753 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D DK53_336 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation by Calvin cycle [PATH:babu00710] D DK53_1674 phosphoglycerate kinase family protein K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D DK53_1673 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D DK53_2365 fba; fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D DK53_2364 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D DK53_1252 glpX; fructose-1,6-bisphosphatase, class II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37] D DK53_1672 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D DK53_997 rpiA; ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D DK53_1127 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D DK53_846 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D DK53_1737 fsa; fructose-6-phosphate aldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D DK53_2009 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D DK53_521 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D DK53_157 phosphate acetyl/butaryl transferase family protein K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D DK53_158 malic enzyme, NAD binding domain protein K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D DK53_1005 dme; NAD-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D DK53_1854 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37] C 00720 Other carbon fixation pathways [PATH:babu00720] D DK53_521 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D DK53_1717 pyc; pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1] D DK53_1854 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D DK53_947 hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D DK53_2951 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D DK53_1829 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D DK53_1828 succinate dehydrogenase and fumarate reductase iron-sulfur family protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D DK53_1831 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D DK53_1830 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D DK53_1852 sucD; succinate-CoA ligase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D DK53_1853 sucC; succinate-CoA ligase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D DK53_2752 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DK53_1709 phbA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DK53_2433 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DK53_1183 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D DK53_107 acnA; aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3] D DK53_1949 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D DK53_900 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D DK53_899 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D DK53_2023 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D DK53_2974 hypothetical protein K09709 meh; 3-methylfumaryl-CoA hydratase [EC:4.2.1.153] D DK53_819 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D DK53_1175 hypothetical protein K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D DK53_2447 tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D DK53_1416 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D DK53_2794 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D DK53_2750 AMP-binding enzyme family protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D DK53_1743 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] C 00680 Methane metabolism [PATH:babu00680] D DK53_142 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D DK53_138 fghA; S-formylglutathione hydrolase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12] D DK53_766 aminotransferase class I and II family protein K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D DK53_391 hypothetical protein K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D DK53_1122 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D DK53_1854 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D DK53_2365 fba; fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D DK53_2364 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D DK53_1252 glpX; fructose-1,6-bisphosphatase, class II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37] D DK53_2794 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D DK53_2750 AMP-binding enzyme family protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D DK53_1743 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D DK53_2190 gpm1; phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D DK53_1635 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D DK53_2747 ACT domain protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D DK53_1636 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D DK53_1361 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 00910 Nitrogen metabolism [PATH:babu00910] D DK53_2853 narK; nitrite transporter family protein K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D DK53_2854 nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D DK53_2855 narH; nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D DK53_2857 narI; respiratory nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D DK53_2890 nirK; nitrite reductase, copper-containing K00368 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1] D DK53_2900 norB; nitric oxide reductase subunit B K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5] D DK53_2901 norC; nitric oxide reductase subunit C K02305 norC; nitric oxide reductase subunit C D DK53_2877 nosZ; nitrous-oxide reductase, TAT-dependent K00376 nosZ; nitrous-oxide reductase [EC:1.7.2.4] D DK53_2398 nitronate monooxygenase family protein K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D DK53_1750 bacterial NAD-glutamate dehydrogenase family protein K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D DK53_233 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D DK53_2460 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DK53_2491 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DK53_992 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DK53_3080 glutamine amidotransferases class-II family protein K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D DK53_3079 gltD; glutamate synthase, NADH/NADPH, small subunit domain protein K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D DK53_2439 carbonic anhydrase family protein K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D DK53_1758 carbonic anhydrase family protein K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:babu00920] D DK53_1307 sulfate ABC transporter, sulfate-binding family protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D DK53_120 sulfate ABC transporter, sulfate-binding family protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D DK53_1306 cysT; sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D DK53_121 cysT; sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D DK53_1305 cysW; sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D DK53_122 cysW; sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D DK53_123 cysA; sulfate ABC transporter, ATP-binding family protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D DK53_2868 NMT1-like family protein K15553 ssuA; sulfonate transport system substrate-binding protein D DK53_3145 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein D DK53_2867 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein D DK53_3146 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D DK53_2866 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D DK53_202 cysC; adenylylsulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D DK53_201 cysD; sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D DK53_203 cysQ; 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D DK53_192 cysH; phosophoadenylyl-sulfate reductase family protein K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D DK53_2913 flavodoxin family protein K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] D DK53_191 nitrite and sulphite reductase 4Fe-4S domain protein K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2] D DK53_1041 rhodanese-like domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D DK53_1243 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D DK53_1889 pyridoxal-phosphate dependent enzyme family protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D DK53_1039 pyridoxal-phosphate dependent enzyme family protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D DK53_2716 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] D DK53_344 metZ; O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-] D DK53_439 hypothetical protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] D DK53_2432 hypothetical protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:babu00061] D DK53_1949 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D DK53_900 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D DK53_899 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D DK53_2023 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D DK53_482 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D DK53_480 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D DK53_2714 3-Oxoacyl-[acyl-carrier-(ACP)] synthase III family protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D DK53_777 fabH; 3-oxoacyl-[acyl-carrier-] synthase III family protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D DK53_4 hypothetical protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D DK53_483 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D DK53_849 hypothetical protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D DK53_850 hypothetical protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D DK53_2784 3-beta hydroxysteroid dehydrogenase/isomerase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DK53_481 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DK53_3100 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DK53_2451 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DK53_2226 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DK53_5 fabA; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D DK53_1140 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D DK53_446 short chain dehydrogenase family protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D DK53_3 short chain dehydrogenase family protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D DK53_330 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:babu00071] D DK53_2752 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DK53_1709 phbA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DK53_2433 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DK53_2434 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D DK53_17 putative enoyl-CoA hydratase echA8 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D DK53_2156 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D DK53_2753 hypothetical protein K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D DK53_2430 hypothetical protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D DK53_1075 hypothetical protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D DK53_330 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D DK53_2494 thcD; rhodocoxin reductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D DK53_142 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D DK53_212 zinc-binding dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D DK53_1051 alcohol dehydrogenase GroES-like domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D DK53_2490 iron-containing alcohol dehydrogenase family protein K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D DK53_848 alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D DK53_211 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_2546 aldA; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_2225 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis [PATH:babu00121] D DK53_1432 linear amide C-N hydrolase, choloylglycine hydrolase family protein K01442 cbh; choloylglycine hydrolase [EC:3.5.1.24] D DK53_1570 short chain dehydrogenase family protein K00076 hdhA; 7-alpha-hydroxysteroid dehydrogenase [EC:1.1.1.159] D DK53_1569 hdhA; 7-alpha-hydroxysteroid dehydrogenase K00076 hdhA; 7-alpha-hydroxysteroid dehydrogenase [EC:1.1.1.159] C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:babu00561] D DK53_391 hypothetical protein K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D DK53_211 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_2546 aldA; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_2225 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_1578 dak1 domain protein K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121] D DK53_1581 dak1 domain protein K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121] D DK53_1577 dhaL; dihydroxyacetone kinase, L subunit K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121] D DK53_1580 dhaL; dihydroxyacetone kinase, L subunit K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121] D DK53_776 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D DK53_2612 plsY; acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D DK53_1915 acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D DK53_1001 prokaryotic diacylglycerol kinase family protein K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] C 00564 Glycerophospholipid metabolism [PATH:babu00564] D DK53_1817 ketopantoate reductase PanE/ApbA family protein K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D DK53_208 FAD binding domain protein K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D DK53_2612 plsY; acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D DK53_1915 acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D DK53_1001 prokaryotic diacylglycerol kinase family protein K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D DK53_3084 alpha/beta hydrolase fold family protein K01048 pldB; lysophospholipase [EC:3.1.1.5] D DK53_2045 putative phospholipid N-methyltransferase K00570 pmtA; phosphatidylethanolamine/phosphatidyl-N-methylethanolamine N-methyltransferase [EC:2.1.1.17 2.1.1.71] D DK53_1144 cytidylyltransferase family protein K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D DK53_2641 pcs; phosphatidylcholine synthase K01004 pcs; phosphatidylcholine synthase [EC:2.7.8.24] D DK53_469 pssA; CDP-diacylglycerol-serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D DK53_468 phosphatidylserine decarboxylase family protein K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D DK53_703 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D DK53_2182 cls; cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids [PATH:babu01040] D DK53_99 GDSL-like Lipase/Acylhydrolase family protein K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D DK53_1825 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D DK53_1470 thioesterase superfamily protein K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:babu00230] D DK53_73 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D DK53_1489 prs; ribose-phosphate diphosphokinase family protein K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D DK53_471 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D DK53_441 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D DK53_714 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D DK53_835 purL; phosphoribosylformylglycinamidine synthase II K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3] D DK53_839 purS; phosphoribosylformylglycinamidine synthase, purS protein K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3] D DK53_838 purQ; phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D DK53_715 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D DK53_1689 purK; phosphoribosylaminoimidazole carboxylase, ATPase subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D DK53_1688 purE; phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D DK53_840 purC; phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D DK53_845 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D DK53_1748 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D DK53_1496 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D DK53_880 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D DK53_1486 multi-copper polyphenol oxidoreductase laccase family protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D DK53_1906 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D DK53_2809 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D DK53_699 nucleoside diphosphate kinase family protein K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D DK53_185 rdgB; non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D DK53_1032 phosphoribosyl transferase domain protein K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22] D DK53_384 xdhA; xanthine dehydrogenase, small subunit K13481 xdhA; xanthine dehydrogenase small subunit [EC:1.17.1.4] D DK53_385 xdhB; xanthine dehydrogenase, molybdopterin binding subunit K13482 xdhB; xanthine dehydrogenase large subunit [EC:1.17.1.4] D DK53_2800 guaA; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D DK53_389 guaD; guanine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3] D DK53_486 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D DK53_2840 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D DK53_1030 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D DK53_2839 ribonucleotide reductase, small chain family protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D DK53_870 dgt; dGTPase family protein K01129 dgt; dGTPase [EC:3.1.5.1] D DK53_674 hypothetical protein K06952 yfdR; 5'-nucleotidase [EC:3.1.3.89] D DK53_661 rsh; GTP pyrophosphokinase rsh K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D DK53_2536 ppx/GppA phosphatase family protein K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D DK53_754 ppx; exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D DK53_1633 purA; adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D DK53_638 amn; AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4] D DK53_2562 ade; adenine deaminase K01486 ade; adenine deaminase [EC:3.5.4.2] D DK53_1668 ymdB-like family protein K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] D DK53_1195 adenylate kinase family protein K00939 adk; adenylate kinase [EC:2.7.4.3] D DK53_728 AAA domain protein K00939 adk; adenylate kinase [EC:2.7.4.3] D DK53_1055 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D DK53_202 cysC; adenylylsulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D DK53_201 cysD; sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D DK53_528 uraH; hydroxyisourate hydrolase K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17] D DK53_382 uraD; OHCU decarboxylase K16842 hpxB; allantoinase [EC:3.5.2.5] D DK53_381 cupin domain protein K14977 ylbA; (S)-ureidoglycine aminohydrolase [EC:3.5.3.26] D DK53_527 ureidoglycolate hydrolase family protein K01483 allA; ureidoglycolate lyase [EC:4.3.2.3] D DK53_310 ureC; urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D DK53_1332 ureC; urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D DK53_309 ureB1; urease subunit beta 1 K01429 ureB; urease subunit beta [EC:3.5.1.5] D DK53_1331 ureB; urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5] D DK53_307 ureA1; urease subunit gamma 1 K01430 ureA; urease subunit gamma [EC:3.5.1.5] D DK53_1330 ureA; urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5] C 00240 Pyrimidine metabolism [PATH:babu00240] D DK53_1452 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D DK53_1448 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D DK53_2614 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D DK53_676 pyrC; dihydroorotase, multifunctional complex type domain protein K01465 URA4; dihydroorotase [EC:3.5.2.3] D DK53_2613 pyrC; dihydroorotase, multifunctional complex type domain protein K01465 URA4; dihydroorotase [EC:3.5.2.3] D DK53_350 pyrD; dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2] D DK53_662 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D DK53_2046 pyrF; orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D DK53_1147 pyrH; UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D DK53_699 nucleoside diphosphate kinase family protein K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D DK53_1055 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D DK53_1987 maf; septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D DK53_291 maf; septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D DK53_1124 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D DK53_44 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D DK53_880 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D DK53_2175 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D DK53_1668 ymdB-like family protein K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] D DK53_345 2'-deoxycytidine 5'-triphosphate deaminase family protein K01494 dcd; dCTP deaminase [EC:3.5.4.13] D DK53_2840 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D DK53_1030 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D DK53_2839 ribonucleotide reductase, small chain family protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D DK53_674 hypothetical protein K06952 yfdR; 5'-nucleotidase [EC:3.1.3.89] D DK53_982 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D DK53_1626 dut; dUTP diphosphatase family protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D DK53_1368 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D DK53_324 FAD dependent oxidoreductase family protein K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1] D DK53_322 dihydroorotate dehydrogenase family domain protein K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1] D DK53_319 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D DK53_320 amidase, hydantoinase/carbamoylase family protein K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:babu00250] D DK53_1457 beta-eliminating lyase family protein K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D DK53_1882 asparaginase family protein K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D DK53_1884 asparaginase family protein K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D DK53_1880 fumarase C family protein K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1] D DK53_88 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D DK53_1902 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D DK53_1633 purA; adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D DK53_845 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D DK53_2614 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D DK53_2820 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D DK53_200 aminotransferase class-III family protein K16871 POP2; 4-aminobutyrate---pyruvate transaminase [EC:2.6.1.96] D DK53_2781 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D DK53_2168 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D DK53_1595 succinate-semialdehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D DK53_3080 glutamine amidotransferases class-II family protein K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D DK53_3079 gltD; glutamate synthase, NADH/NADPH, small subunit domain protein K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D DK53_1750 bacterial NAD-glutamate dehydrogenase family protein K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D DK53_233 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D DK53_2500 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D DK53_2460 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DK53_2491 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DK53_992 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DK53_1452 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D DK53_1448 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D DK53_2818 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D DK53_838 purQ; phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D DK53_2631 glmS; glutamine-fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D DK53_2325 SIS domain protein K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D DK53_471 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:babu00260] D DK53_1801 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4] D DK53_2351 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D DK53_1253 ACT domain protein K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D DK53_498 thrB; homoserine kinase K02204 thrB2; homoserine kinase type II [EC:2.7.1.39] D DK53_506 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D DK53_3081 psald; phenylserine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D DK53_766 aminotransferase class I and II family protein K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D DK53_23 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D DK53_391 hypothetical protein K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D DK53_2190 gpm1; phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D DK53_1635 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D DK53_2747 ACT domain protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D DK53_1636 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D DK53_1361 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D DK53_357 hemA; 5-aminolevulinic acid synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37] D DK53_2498 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D DK53_2496 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D DK53_1116 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DK53_1846 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DK53_2681 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DK53_2497 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D DK53_469 pssA; CDP-diacylglycerol-serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D DK53_568 FAD dependent oxidoreductase family protein K00108 betA; choline dehydrogenase [EC:1.1.99.1] D DK53_567 betB; betaine aldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8] D DK53_1426 putative Ring hydroxylating alpha subunit K00479 gbcA; glycine betaine monooxygenase A [EC:1.14.13.251] D DK53_1427 2Fe-2S iron-sulfur cluster binding domain protein K21832 gbcB; glycine betaine monooxygenase B [EC:1.14.13.251] D DK53_236 2Fe-2S iron-sulfur cluster binding domain protein K00302 soxA; sarcosine oxidase, subunit alpha [EC:1.5.3.24 1.5.3.1] D DK53_237 pyridine nucleotide-disulfide oxidoreductase family protein K00302 soxA; sarcosine oxidase, subunit alpha [EC:1.5.3.24 1.5.3.1] D DK53_238 aminomethyltransferase folate-binding domain protein K00302 soxA; sarcosine oxidase, subunit alpha [EC:1.5.3.24 1.5.3.1] D DK53_234 sarcosine oxidase, beta subunit K00303 soxB; sarcosine oxidase, subunit beta [EC:1.5.3.24 1.5.3.1] D DK53_240 sarcosine oxidase, gamma subunit K00305 soxG; sarcosine oxidase, subunit gamma [EC:1.5.3.24 1.5.3.1] D DK53_235 soxD; subunit delta of sarcosine oxidase K00304 soxD; sarcosine oxidase, subunit delta [EC:1.5.3.24 1.5.3.1] D DK53_1161 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D DK53_1037 ilvA; threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D DK53_2024 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D DK53_2026 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] C 00270 Cysteine and methionine metabolism [PATH:babu00270] D DK53_1243 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D DK53_1889 pyridoxal-phosphate dependent enzyme family protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D DK53_1039 pyridoxal-phosphate dependent enzyme family protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D DK53_744 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D DK53_198 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D DK53_2073 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D DK53_2801 phosphorylase superfamily protein K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D DK53_1486 multi-copper polyphenol oxidoreductase laccase family protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D DK53_1886 cys/Met metabolism PLP-dependent enzyme family protein K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11] D DK53_2015 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D DK53_1801 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4] D DK53_2351 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D DK53_1253 ACT domain protein K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D DK53_2716 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] D DK53_793 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D DK53_344 metZ; O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-] D DK53_2550 aminotransferase class IV family protein K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D DK53_2465 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D DK53_2049 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3] D DK53_1457 beta-eliminating lyase family protein K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D DK53_1041 rhodanese-like domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D DK53_1854 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D DK53_1161 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D DK53_1635 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D DK53_2747 ACT domain protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D DK53_1636 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:babu00280] D DK53_2550 aminotransferase class IV family protein K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D DK53_2685 bkdA1; 2-oxoisovalerate dehydrogenase subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D DK53_2684 bkdA2; 2-oxoisovalerate dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D DK53_2159 dehydrogenase E1 component family protein K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D DK53_3098 dehydrogenase E1 component family protein K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D DK53_2683 bkdB; lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D DK53_1116 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DK53_1846 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DK53_2681 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DK53_2753 hypothetical protein K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D DK53_2430 hypothetical protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D DK53_35 hypothetical protein K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4] D DK53_17 putative enoyl-CoA hydratase echA8 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D DK53_2156 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D DK53_2434 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D DK53_1173 pccA; propionyl-CoA carboxylase, alpha subunit K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3] D DK53_1172 pccB; propionyl-CoA carboxylase, beta subunit K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15] D DK53_819 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D DK53_1175 hypothetical protein K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D DK53_1292 mmsB; 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D DK53_939 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D DK53_1761 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D DK53_211 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_2546 aldA; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_2225 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_2312 aminotransferase class-III family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D DK53_33 D-ala D-ala ligase family protein K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4] D DK53_34 carboxyl transferase domain protein K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4] D DK53_31 enoyl-CoA hydratase/isomerase family protein K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18] D DK53_32 HMGL-like family protein K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D DK53_36 acetoacetate-CoA ligase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16] D DK53_2752 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DK53_1709 phbA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DK53_2433 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:babu00290] D DK53_1037 ilvA; threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D DK53_1833 leuC; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D DK53_2355 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D DK53_2348 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D DK53_1359 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D DK53_2293 thiamine pyrophosphate enzyme, central domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D DK53_1358 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D DK53_1352 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D DK53_113 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D DK53_2550 aminotransferase class IV family protein K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D DK53_685 HMGL-like family protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D DK53_1522 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:babu00300] D DK53_1253 ACT domain protein K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D DK53_1801 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4] D DK53_2351 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D DK53_2774 dihydrodipicolinate synthetase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D DK53_656 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D DK53_2191 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D DK53_2212 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D DK53_340 argD; transaminase, acetylornithine/succinylornithine family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D DK53_2209 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D DK53_1857 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D DK53_1904 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D DK53_1403 murE; UDP-N-acetylmuramyl-tripeptide synthetase family protein K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D DK53_1402 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:babu00310] D DK53_2329 aldehyde dehydrogenase family protein K26061 amaB; L-aminoadipate-semialdehyde dehydrogenase D DK53_1850 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D DK53_1116 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DK53_1846 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DK53_2681 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DK53_1075 hypothetical protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D DK53_17 putative enoyl-CoA hydratase echA8 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D DK53_2156 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D DK53_2434 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D DK53_2752 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DK53_1709 phbA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DK53_2433 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DK53_2781 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D DK53_2168 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D DK53_1595 succinate-semialdehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D DK53_2235 FAD binding domain protein K15736 lhgO; (S)-2-hydroxyglutarate dehydrogenase [EC:1.1.5.13] D DK53_2330 hypothetical protein K25986 ydcJ; 2-oxoadipate dioxygenase/decarboxylase [EC:1.13.11.93] D DK53_2921 coA-transferase III family protein K01041 gcdG; glutaryl-CoA transferase [EC:2.8.3.-] D DK53_2304 aminotransferase class IV family protein K00824 dat; D-alanine transaminase [EC:2.6.1.21] D DK53_2586 FAD dependent oxidoreductase family protein K26064 amaD; D-lysine oxidase D DK53_2907 malate/L-lactate dehydrogenase family protein K13609 dpkA; delta1-piperideine-2-carboxylate reductase [EC:1.5.1.21] D DK53_2332 FAD binding domain protein K26065 amaA; L-pipecolate oxidase D DK53_211 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_2546 aldA; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_2225 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00220 Arginine biosynthesis [PATH:babu00220] D DK53_341 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D DK53_88 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D DK53_1902 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D DK53_2338 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1] D DK53_310 ureC; urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D DK53_1332 ureC; urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D DK53_309 ureB1; urease subunit beta 1 K01429 ureB; urease subunit beta [EC:3.5.1.5] D DK53_1331 ureB; urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5] D DK53_307 ureA1; urease subunit gamma 1 K01430 ureA; urease subunit gamma [EC:3.5.1.5] D DK53_1330 ureA; urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5] D DK53_2818 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D DK53_838 purQ; phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D DK53_2460 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DK53_2491 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DK53_992 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DK53_1452 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D DK53_1448 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D DK53_1750 bacterial NAD-glutamate dehydrogenase family protein K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D DK53_233 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D DK53_1457 beta-eliminating lyase family protein K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D DK53_1866 argJ; glutamate N-acetyltransferase/amino-acid acetyltransferase K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] D DK53_2215 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D DK53_788 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D DK53_340 argD; transaminase, acetylornithine/succinylornithine family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] C 00330 Arginine and proline metabolism [PATH:babu00330] D DK53_2255 creatinine amidohydrolase family protein K01470 E3.5.2.10; creatinine amidohydrolase [EC:3.5.2.10] D DK53_789 speB; agmatinase K01480 speB; agmatinase [EC:3.5.3.11] D DK53_1879 arginase family protein K01480 speB; agmatinase [EC:3.5.3.11] D DK53_3037 hypothetical protein K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D DK53_370 nspC; carboxynorspermidine decarboxylase K13747 nspC; carboxynorspermidine decarboxylase [EC:4.1.1.96] D DK53_211 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_2546 aldA; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_2225 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_3038 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DK53_2141 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DK53_2458 FAD binding domain protein K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-] D DK53_3163 aldehyde dehydrogenase family protein K09472 puuC; 4-(gamma-glutamylamino)butanal dehydrogenase [EC:1.2.1.99] D DK53_2338 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1] D DK53_2446 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D DK53_2500 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D DK53_2339 acetohydroxy acid isomeroreductase, catalytic domain protein K01750 E4.3.1.12; ornithine cyclodeaminase [EC:4.3.1.12] D DK53_1773 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D DK53_1772 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D DK53_353 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D DK53_1457 beta-eliminating lyase family protein K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D DK53_2304 aminotransferase class IV family protein K00824 dat; D-alanine transaminase [EC:2.6.1.21] D DK53_372 hypothetical protein K22548 lhpL; trans-L-3-hydroxyproline dehydratase [EC:4.2.1.77] C 00340 Histidine metabolism [PATH:babu00340] D DK53_2954 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D DK53_2955 tRNA synthetase class II core domain family protein K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit D DK53_2005 hisE; phosphoribosyl-ATP diphosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31] D DK53_1064 phosphoribosyl-AMP cyclohydrolase family protein K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19] D DK53_2003 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D DK53_2002 hisH; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D DK53_2004 hisF; imidazoleglycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D DK53_2000 imidazoleglycerol-phosphate dehydratase family protein K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D DK53_1908 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D DK53_648 aminotransferase class I and II family protein K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D DK53_3085 hisN; histidinol-phosphatase K05602 hisN; histidinol-phosphatase [EC:3.1.3.15] D DK53_295 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D DK53_2308 hutH; histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D DK53_2306 hutU; urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49] D DK53_2309 hutI; imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7] D DK53_2310 hutF; formiminoglutamate deiminase K05603 hutF; formimidoylglutamate deiminase [EC:3.5.3.13] D DK53_2307 hutG; N-formylglutamate deformylase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68] D DK53_211 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_2546 aldA; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_2225 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00350 Tyrosine metabolism [PATH:babu00350] D DK53_1457 beta-eliminating lyase family protein K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D DK53_1908 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D DK53_648 aminotransferase class I and II family protein K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D DK53_142 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D DK53_212 zinc-binding dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D DK53_1051 alcohol dehydrogenase GroES-like domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D DK53_2490 iron-containing alcohol dehydrogenase family protein K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D DK53_848 alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D DK53_3174 hpaE; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase K00151 hpaE; 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase [EC:1.2.1.60] D DK53_3173 5-carboxymethyl-2-hydroxymuconate isomerase family protein K01826 hpaF; 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10] D DK53_2083 hpaH; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase K02509 hpaH; 2-oxo-hept-3-ene-1,7-dioate hydratase [EC:4.2.1.-] D DK53_2084 hpaI; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52] D DK53_842 hpcH/HpaI aldolase/citrate lyase family protein K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52] D DK53_2781 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D DK53_2168 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D DK53_1595 succinate-semialdehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D DK53_77 fumarylacetoacetate (FAA) hydrolase family protein K16165 nagK; fumarylpyruvate hydrolase [EC:3.7.1.20] C 00360 Phenylalanine metabolism [PATH:babu00360] D DK53_17 putative enoyl-CoA hydratase echA8 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D DK53_2156 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D DK53_2922 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D DK53_2157 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D DK53_1890 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D DK53_1457 beta-eliminating lyase family protein K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D DK53_1908 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D DK53_648 aminotransferase class I and II family protein K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D DK53_2314 ketopantoate reductase PanE/ApbA family protein K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D DK53_2304 aminotransferase class IV family protein K00824 dat; D-alanine transaminase [EC:2.6.1.21] D DK53_3038 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DK53_2141 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DK53_2494 thcD; rhodocoxin reductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] C 00380 Tryptophan metabolism [PATH:babu00380] D DK53_1850 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D DK53_1116 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DK53_1846 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DK53_2681 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DK53_1075 hypothetical protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D DK53_17 putative enoyl-CoA hydratase echA8 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D DK53_2156 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D DK53_2434 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D DK53_2752 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DK53_1709 phbA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DK53_2433 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DK53_211 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_2546 aldA; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_2225 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_3038 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DK53_2141 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DK53_2806 katA; catalase K03781 katE; catalase [EC:1.11.1.6] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:babu00400] D DK53_1000 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D DK53_1945 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D DK53_901 aroQ; 3-dehydroquinate dehydratase, type II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D DK53_1988 aroE; shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D DK53_1946 shikimate kinase family protein K00891 aroK; shikimate kinase [EC:2.7.1.71] D DK53_43 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D DK53_453 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D DK53_1524 anthranilate synthase K13503 trpEG; anthranilate synthase [EC:4.1.3.27] D DK53_1129 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D DK53_2027 N-(5'phosphoribosyl)anthranilate (PRA) isomerase family protein K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D DK53_1130 indole-3-glycerol phosphate synthase family protein K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D DK53_2024 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D DK53_2026 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D DK53_1755 chorismate mutase K04092 tyrA1; chorismate mutase [EC:5.4.99.5] D DK53_1910 prephenate dehydrogenase family protein K00220 tyrC; cyclohexadieny/prephenate dehydrogenase [EC:1.3.1.43 1.3.1.12] D DK53_54 prephenate dehydratase family protein K04518 pheA2; prephenate dehydratase [EC:4.2.1.51] D DK53_1457 beta-eliminating lyase family protein K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D DK53_1908 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D DK53_648 aminotransferase class I and II family protein K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:babu00410] D DK53_2820 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D DK53_211 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_2546 aldA; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_2225 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_366 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D DK53_324 FAD dependent oxidoreductase family protein K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1] D DK53_322 dihydroorotate dehydrogenase family domain protein K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1] D DK53_319 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D DK53_320 amidase, hydantoinase/carbamoylase family protein K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D DK53_2312 aminotransferase class-III family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D DK53_17 putative enoyl-CoA hydratase echA8 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D DK53_2156 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D DK53_2434 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D DK53_2753 hypothetical protein K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D DK53_1761 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] C 00430 Taurine and hypotaurine metabolism [PATH:babu00430] D DK53_2820 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D DK53_1750 bacterial NAD-glutamate dehydrogenase family protein K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D DK53_2794 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism [PATH:babu00440] D DK53_857 phnM; phosphonate metabolism protein PhnM K06162 phnM; alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [EC:3.6.1.63] D DK53_986 metallo-beta-lactamase superfamily protein K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55] C 00450 Selenocompound metabolism [PATH:babu00450] D DK53_744 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D DK53_198 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D DK53_1886 cys/Met metabolism PLP-dependent enzyme family protein K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11] D DK53_923 sufS; cysteine desulfurase, SufS family protein K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D DK53_1461 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D DK53_202 cysC; adenylylsulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D DK53_201 cysD; sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D DK53_984 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:babu00460] D DK53_1882 asparaginase family protein K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D DK53_1884 asparaginase family protein K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D DK53_766 aminotransferase class I and II family protein K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:babu00470] D DK53_2315 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D DK53_2304 aminotransferase class IV family protein K00824 dat; D-alanine transaminase [EC:2.6.1.21] D DK53_1251 ddlA; D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D DK53_1395 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D DK53_2818 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D DK53_838 purQ; phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D DK53_1179 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D DK53_1400 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D DK53_1006 hypothetical protein K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25] D DK53_1857 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D DK53_1904 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D DK53_1726 prpA; 4-hydroxyproline epimerase K12658 lhpA; 4-hydroxyproline epimerase [EC:5.1.1.8] D DK53_2908 dapA; dihydrodipicolinate synthase K21062 lhpC; 1-pyrroline-4-hydroxy-2-carboxylate deaminase [EC:3.5.4.22] D DK53_2314 ketopantoate reductase PanE/ApbA family protein K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] C 00480 Glutathione metabolism [PATH:babu00480] D DK53_1911 chaC-like family protein K07232 CHAC; glutathione-specific gamma-glutamylcyclotransferase [EC:4.3.2.7] D DK53_2540 hydantoinase/oxoprolinase family protein K01469 OPLAH; 5-oxoprolinase (ATP-hydrolysing) [EC:3.5.2.9] D DK53_2465 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D DK53_2049 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3] D DK53_694 hypothetical protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D DK53_14 hypothetical protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D DK53_632 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D DK53_707 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D DK53_2198 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D DK53_1456 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D DK53_2239 gst; glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D DK53_999 gor; glutathione-disulfide reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7] D DK53_1183 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D DK53_3027 gnd; 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D DK53_2450 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D DK53_500 ahpC/TSA family protein K24138 prx3; glutaredoxin/glutathione-dependent peroxiredoxin [EC:1.11.1.25 1.11.1.27] D DK53_3037 hypothetical protein K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis [PATH:babu00540] D DK53_1139 lpxA; acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D DK53_1391 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D DK53_1141 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D DK53_1138 hypothetical protein K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D DK53_1137 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D DK53_2929 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D DK53_3061 sugar isomerase, KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D DK53_1123 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D DK53_55 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D DK53_2930 3-Deoxy-D-manno-octulosonic-acid transferase family protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D DK53_847 bacterial lipid A biosynthesis acyltransferase family protein K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D DK53_1870 hypothetical protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D DK53_1871 sulfatase family protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:babu00541] D DK53_3063 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D DK53_1054 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D DK53_2665 nucleotide sugar dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D DK53_2813 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D DK53_2812 phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein K01840 manB; phosphomannomutase [EC:5.4.2.8] D DK53_554 phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein K01840 manB; phosphomannomutase [EC:5.4.2.8] D DK53_555 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D DK53_542 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D DK53_541 perosamine synthetase K13010 per; perosamine synthetase [EC:2.6.1.102] D DK53_537 formyl transferase family protein K00607 wbkC; GDP-perosamine N-formyltransferase [EC:2.1.2.14] D DK53_2630 glmU; UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] C 00550 Peptidoglycan biosynthesis [PATH:babu00550] D DK53_297 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D DK53_1396 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D DK53_1397 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D DK53_1400 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D DK53_1403 murE; UDP-N-acetylmuramyl-tripeptide synthetase family protein K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D DK53_1251 ddlA; D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D DK53_1395 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D DK53_1402 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D DK53_1145 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D DK53_2199 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D DK53_1401 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D DK53_1398 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D DK53_1712 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D DK53_599 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D DK53_130 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D DK53_907 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D DK53_1404 penicillin binding transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D DK53_981 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] C 00552 Teichoic acid biosynthesis [PATH:babu00552] D DK53_2199 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:babu00543] D DK53_1243 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:babu00730] D DK53_224 thiD; phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D DK53_919 aminotransferase class-V family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D DK53_223 thiO; glycine oxidase ThiO K03153 thiO; glycine oxidase [EC:1.4.3.19] D DK53_461 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D DK53_221 thiazole biosynthesis ThiG family protein K03149 thiG; thiazole synthase [EC:2.8.1.10] D DK53_220 thiE; thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D DK53_1655 thiamine monophosphate synthase/TENI family protein K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D DK53_1184 phoA; alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D DK53_1698 thiamine pyrophosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2] D DK53_1195 adenylate kinase family protein K00939 adk; adenylate kinase [EC:2.7.4.3] D DK53_728 AAA domain protein K00939 adk; adenylate kinase [EC:2.7.4.3] D DK53_218 tenA; thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] C 00740 Riboflavin metabolism [PATH:babu00740] D DK53_454 ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D DK53_768 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D DK53_2527 ribH2; 6,7-dimethyl-8-ribityllumazine synthase 2 K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D DK53_770 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D DK53_769 ribE; riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9] D DK53_2946 ribF; riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D DK53_2187 bluB; 5,6-dimethylbenzimidazole synthase K04719 bluB; 5,6-dimethylbenzimidazole synthase [EC:1.13.11.79] D DK53_2860 polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism [PATH:babu00750] D DK53_443 pdxH; pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D DK53_1759 pyridoxal kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35] D DK53_1636 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D DK53_689 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase PdxA K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] D DK53_1355 pdxJ; pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2] D DK53_506 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism [PATH:babu00760] D DK53_125 pncB; nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D DK53_880 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D DK53_1771 nadD; nicotinate (nicotinamide) nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D DK53_1055 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D DK53_53 NUDIX domain protein K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22] D DK53_1002 nadE; NAD+ synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5] D DK53_1112 cinA; competence/damage-inducible protein CinA K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D DK53_1430 isochorismatase family protein K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] D DK53_927 ATP-NAD kinase family protein K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D DK53_2266 hypothetical protein K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D DK53_2267 hypothetical protein K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D DK53_2268 pntB; NAD(P) transhydrogenase subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1] D DK53_2781 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D DK53_2168 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D DK53_1595 succinate-semialdehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:babu00770] D DK53_1359 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D DK53_2293 thiamine pyrophosphate enzyme, central domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D DK53_1358 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D DK53_1352 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D DK53_113 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D DK53_367 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D DK53_366 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D DK53_2006 coaA; pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33] D DK53_2180 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D DK53_1055 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D DK53_1086 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D DK53_1989 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D DK53_668 acpS; holo-[acyl-carrier-protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D DK53_2550 aminotransferase class IV family protein K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D DK53_324 FAD dependent oxidoreductase family protein K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1] D DK53_322 dihydroorotate dehydrogenase family domain protein K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1] D DK53_319 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D DK53_320 amidase, hydantoinase/carbamoylase family protein K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D DK53_211 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_2546 aldA; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_2225 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00780 Biotin metabolism [PATH:babu00780] D DK53_4 hypothetical protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D DK53_483 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D DK53_849 hypothetical protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D DK53_850 hypothetical protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D DK53_2784 3-beta hydroxysteroid dehydrogenase/isomerase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DK53_481 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DK53_3100 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DK53_2451 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DK53_2226 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DK53_1140 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D DK53_446 short chain dehydrogenase family protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D DK53_3 short chain dehydrogenase family protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D DK53_2711 aminotransferase class I and II family protein K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D DK53_2713 bioA; adenosylmethionine-8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D DK53_2712 bioD; dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D DK53_2710 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6] D DK53_817 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:babu00785] D DK53_2623 lipB; lipoyl(octanoyl) transferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D DK53_1115 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D DK53_1116 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DK53_1846 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DK53_2681 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DK53_1119 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D DK53_1118 hypothetical protein K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D DK53_1117 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D DK53_3096 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D DK53_1851 sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D DK53_1850 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D DK53_2685 bkdA1; 2-oxoisovalerate dehydrogenase subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D DK53_2684 bkdA2; 2-oxoisovalerate dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D DK53_2159 dehydrogenase E1 component family protein K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D DK53_3098 dehydrogenase E1 component family protein K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D DK53_2683 bkdB; lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D DK53_2498 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D DK53_2496 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D DK53_2497 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:babu00790] D DK53_1063 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D DK53_1184 phoA; alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D DK53_1017 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D DK53_1018 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D DK53_1016 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D DK53_1367 dihydrofolate reductase family protein K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D DK53_2022 folC; bifunctional FolC family protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D DK53_454 ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D DK53_3054 pabB; aminodeoxychorismate synthase, component I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85] D DK53_3055 aminotransferase class IV family protein K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38] D DK53_1894 queD; queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D DK53_95 putative pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D DK53_1895 queE; 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D DK53_1893 queC; queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D DK53_1168 queF; 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D DK53_944 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D DK53_1131 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D DK53_701 moaE family protein K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D DK53_2708 mog; molybdenum cofactor biosynthesis MOG K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D DK53_1132 hypothetical protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D DK53_943 mobA-like NTP transferase domain protein K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:babu00670] D DK53_1367 dihydrofolate reductase family protein K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D DK53_2447 tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D DK53_766 aminotransferase class I and II family protein K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D DK53_714 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D DK53_1748 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D DK53_2206 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D DK53_2496 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D DK53_198 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D DK53_1368 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D DK53_2328 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D DK53_1416 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D DK53_1669 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:babu00860] D DK53_357 hemA; 5-aminolevulinic acid synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37] D DK53_1135 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D DK53_1004 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D DK53_2135 aminotransferase class-III family protein K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D DK53_761 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D DK53_1815 hemC; porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D DK53_1814 uroporphyrinogen-III synthase HemD family protein K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D DK53_1985 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D DK53_1506 coproporphyrinogen III oxidase family protein K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3] D DK53_3132 hemN; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3] D DK53_664 hemN; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3] D DK53_1984 hypothetical protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-] D DK53_3058 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D DK53_189 cobA; uroporphyrinogen-III C-methyltransferase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4] D DK53_1276 cobA; uroporphyrinogen-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D DK53_491 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D DK53_787 cytochrome oxidase assembly family protein K02259 COX15; heme a synthase [EC:1.17.99.9] D DK53_1267 cobI; precorrin-2 C20-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151] D DK53_1265 cobG; precorrin-3B synthase K02229 cobG; precorrin-3B synthase [EC:1.14.13.83] D DK53_1280 cobalamin synthesis G family protein K05934 cobJ; precorrin-3B C17-methyltransferase / cobalt-factor III methyltransferase [EC:2.1.1.131 2.1.1.272] D DK53_1268 cobJ; precorrin-3B C17-methyltransferase K13541 cbiGH-cobJ; cobalt-precorrin 5A hydrolase / cobalt-factor III methyltransferase / precorrin-3B C17-methyltransferase [EC:3.7.1.12 2.1.1.272 2.1.1.131] D DK53_1278 cobM; precorrin-4 C11-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271] D DK53_1279 precorrin-6x reductase CbiJ/CobK family protein K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106] D DK53_1277 cbiD; cobalamin biosynthesis protein CbiD K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195] D DK53_1264 cbiT; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196] D DK53_1266 precorrin-8X methylmutase family protein K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60] D DK53_1275 cobB; cobyrinic acid a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11] D DK53_1285 cobN; cobaltochelatase, CobN subunit K02230 cobN; cobaltochelatase CobN [EC:6.6.1.2] D DK53_1941 cobS; cobalamin 5'-phosphate synthase K09882 cobS; cobaltochelatase CobS [EC:6.6.1.2] D DK53_1940 cobT; cobaltochelatase, CobT subunit K09883 cobT; cobaltochelatase CobT [EC:6.6.1.2] D DK53_1271 flavin reductase like domain protein K13786 cobR; cob(II)yrinic acid a,c-diamide reductase [EC:1.16.8.-] D DK53_1896 cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D DK53_1284 cobO; cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D DK53_1290 cobQ; cobyric acid synthase CobQ K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10] D DK53_1272 cobD; cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D DK53_1274 threonine-phosphate decarboxylase K02225 cobC1; cobalamin biosynthesis protein CobC D DK53_1287 cobP; bifunctional adenosylcobalamin biosynthesis protein CobP K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] D DK53_861 cobS; cobalamin 5'-phosphate synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D DK53_862 cobT; cobaltochelatase, CobT subunit K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] D DK53_2649 bfr; bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:babu00130] D DK53_442 ubiA; 4-hydroxybenzoate polyprenyl transferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D DK53_2861 ubiD; ubiD decarboxylase family protein K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98] D DK53_2860 polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D DK53_1803 ubiG; 3-demethylubiquinone-9 3-O-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] D DK53_1826 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] D DK53_2640 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] D DK53_2177 ubiquinone/menaquinone biosynthesis methyltransferase family protein K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D DK53_3114 entC; isochorismate synthase entC K02361 entC; isochorismate synthase [EC:5.4.4.2] D DK53_1035 wrbA; quinone oxidoreductase, type IV K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:babu00900] D DK53_461 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D DK53_1111 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K12506 ispDF; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12] D DK53_423 ispE; 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D DK53_1714 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D DK53_497 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D DK53_2752 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DK53_1709 phbA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DK53_2433 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DK53_2860 polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D DK53_1713 ispA; geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D DK53_428 polyprenyl synthetase family protein K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D DK53_1145 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis [PATH:babu00906] D DK53_887 squalene/phytoene synthase family protein K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32] C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation D DK53_211 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_2546 aldA; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_2225 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00907 Pinene, camphor and geraniol degradation [PATH:babu00907] D DK53_17 putative enoyl-CoA hydratase echA8 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D DK53_2156 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D DK53_2434 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D DK53_32 HMGL-like family protein K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D DK53_1672 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides [PATH:babu01053] D DK53_3114 entC; isochorismate synthase entC K02361 entC; isochorismate synthase [EC:5.4.4.2] D DK53_3116 entB; isochorismatase K01252 entB; bifunctional isochorismate lyase / aryl carrier protein [EC:3.3.2.1 6.3.2.14] D DK53_3117 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase K00216 entA; 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase [EC:1.3.1.28] D DK53_3119 4'-phosphopantetheinyl transferase superfamily protein K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-] D DK53_3115 (2,3-dihydroxybenzoyl)adenylate synthase K02363 entE; 2,3-dihydroxybenzoate---[aryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.71] D DK53_3113 condensation domain protein K02364 entF; L-serine---[L-seryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.72] C 01055 Biosynthesis of vancomycin group antibiotics B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis D DK53_2154 acyII; penicillin acylase 2 K01434 pac; penicillin G amidase [EC:3.5.1.11] C 00332 Carbapenem biosynthesis [PATH:babu00332] D DK53_1773 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D DK53_1772 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:babu00261] D DK53_202 cysC; adenylylsulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D DK53_201 cysD; sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D DK53_1801 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4] D DK53_2351 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D DK53_2774 dihydrodipicolinate synthetase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D DK53_656 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D DK53_2191 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:babu00521] D DK53_2193 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D DK53_73 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D DK53_2933 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D DK53_1658 suhB; extragenic suppressor protein suhB K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D DK53_2504 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D DK53_2510 idhA; inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D DK53_2193 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis C 00401 Novobiocin biosynthesis [PATH:babu00401] D DK53_1910 prephenate dehydrogenase family protein K00220 tyrC; cyclohexadieny/prephenate dehydrogenase [EC:1.3.1.43 1.3.1.12] D DK53_1457 beta-eliminating lyase family protein K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D DK53_1908 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D DK53_648 aminotransferase class I and II family protein K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis D DK53_1347 phenazine biosynthesis , PhzF family protein K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17] C 00333 Prodigiosin biosynthesis D DK53_480 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D DK53_2784 3-beta hydroxysteroid dehydrogenase/isomerase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DK53_481 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DK53_3100 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DK53_2451 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DK53_2226 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DK53_446 short chain dehydrogenase family protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D DK53_3 short chain dehydrogenase family protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D DK53_482 acpP; acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites [PATH:babu00999] D DK53_2073 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D DK53_1988 aroE; shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:babu00362] D DK53_2573 pcaD; 3-oxoadipate enol-lactonase K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24] D DK53_2578 3-oxoacid CoA-transferase, A subunit K01031 pcaI; 3-oxoadipate CoA-transferase, alpha subunit [EC:2.8.3.6] D DK53_2579 3-oxoacid CoA-transferase, B subunit K01032 pcaJ; 3-oxoadipate CoA-transferase, beta subunit [EC:2.8.3.6] D DK53_2580 pcaF; 3-oxoadipyl-CoA thiolase K07823 pcaF; 3-oxoadipyl-CoA thiolase [EC:2.3.1.174] D DK53_844 glyoxalase/Bleomycin resistance/Dioxygenase superfamily protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2] D DK53_2569 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3] D DK53_2570 pcaH; protocatechuate 3,4-dioxygenase, beta subunit K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3] D DK53_2568 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase K01857 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2] D DK53_2572 pcaC; 4-carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D DK53_2494 thcD; rhodocoxin reductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D DK53_1012 ferredoxin K04755 fdx; ferredoxin, 2Fe-2S D DK53_2575 pobA; 4-hydroxybenzoate 3-monooxygenase K00481 pobA; p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2] D DK53_2434 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D DK53_1075 hypothetical protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D DK53_17 putative enoyl-CoA hydratase echA8 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D DK53_2156 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D DK53_2922 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D DK53_2157 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D DK53_1890 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D DK53_2752 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DK53_1709 phbA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DK53_2433 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation [PATH:babu00627] D DK53_3038 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DK53_2141 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DK53_2860 polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D DK53_402 acyl-CoA reductase family protein K21802 vdh; vanillin dehydrogenase [EC:1.2.1.67] D DK53_17 putative enoyl-CoA hydratase echA8 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D DK53_2156 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation [PATH:babu00625] D DK53_212 zinc-binding dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D DK53_1051 alcohol dehydrogenase GroES-like domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D DK53_2490 iron-containing alcohol dehydrogenase family protein K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D DK53_848 alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D DK53_142 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D DK53_211 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_2546 aldA; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_2225 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DK53_582 dehII; haloacid dehalogenase, type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] D DK53_513 HAD hydrolase, IA, variant 3 family protein K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:babu00361] D DK53_844 glyoxalase/Bleomycin resistance/Dioxygenase superfamily protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2] D DK53_582 dehII; haloacid dehalogenase, type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] D DK53_513 HAD hydrolase, IA, variant 3 family protein K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] C 00623 Toluene degradation C 00622 Xylene degradation [PATH:babu00622] D DK53_844 glyoxalase/Bleomycin resistance/Dioxygenase superfamily protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2] C 00633 Nitrotoluene degradation [PATH:babu00633] D DK53_2336 flavin oxidoreductase / NADH oxidase family protein K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-] C 00642 Ethylbenzene degradation C 00643 Styrene degradation [PATH:babu00643] D DK53_3038 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DK53_2141 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DK53_844 glyoxalase/Bleomycin resistance/Dioxygenase superfamily protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2] D DK53_1966 coenzyme A transferase family protein K01026 pct; propionate CoA-transferase [EC:2.8.3.1] C 00791 Atrazine degradation D DK53_310 ureC; urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D DK53_1332 ureC; urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D DK53_309 ureB1; urease subunit beta 1 K01429 ureB; urease subunit beta [EC:3.5.1.5] D DK53_1331 ureB; urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5] D DK53_307 ureA1; urease subunit gamma 1 K01430 ureA; urease subunit gamma [EC:3.5.1.5] D DK53_1330 ureA; urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5] C 00930 Caprolactam degradation [PATH:babu00930] D DK53_2924 hypothetical protein K06446 DCAA; acyl-CoA dehydrogenase [EC:1.3.99.-] D DK53_2155 hypothetical protein K06446 DCAA; acyl-CoA dehydrogenase [EC:1.3.99.-] D DK53_17 putative enoyl-CoA hydratase echA8 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D DK53_2156 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D DK53_2434 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] C 00363 Bisphenol degradation C 00621 Dioxin degradation C 00626 Naphthalene degradation [PATH:babu00626] D DK53_212 zinc-binding dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D DK53_1051 alcohol dehydrogenase GroES-like domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D DK53_2490 iron-containing alcohol dehydrogenase family protein K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D DK53_848 alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D DK53_142 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation D DK53_2569 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3] D DK53_2570 pcaH; protocatechuate 3,4-dioxygenase, beta subunit K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3] C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:babu03020] D DK53_1224 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D DK53_1223 DNA-directed RNA polymerase, beta'' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D DK53_1192 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D DK53_660 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:babu03010] D DK53_45 rpsA; ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D DK53_1149 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D DK53_1210 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D DK53_828 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D DK53_1199 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D DK53_479 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D DK53_1220 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D DK53_1202 ribosomal S8 family protein K02994 RP-S8; small subunit ribosomal protein S8 D DK53_790 ribosomal S9/S16 family protein K02996 RP-S9; small subunit ribosomal protein S9 D DK53_1217 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D DK53_1193 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D DK53_1221 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D DK53_1194 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D DK53_1203 ribosomal S14p/S29e family protein K02954 RP-S14; small subunit ribosomal protein S14 D DK53_2081 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D DK53_1754 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D DK53_1207 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D DK53_478 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D DK53_1212 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D DK53_18 rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D DK53_2274 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D DK53_1227 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D DK53_1213 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D DK53_1216 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D DK53_1215 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D DK53_1204 ribosomal L5 family protein K02931 RP-L5; large subunit ribosomal protein L5 D DK53_1201 rplF; ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D DK53_1225 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D DK53_476 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D DK53_1226 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D DK53_1228 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D DK53_791 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D DK53_1206 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D DK53_1197 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D DK53_1209 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D DK53_1191 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D DK53_1200 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D DK53_1834 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D DK53_2038 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D DK53_1779 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D DK53_1211 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D DK53_1214 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D DK53_1205 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D DK53_1491 ribosomal protein L25, Ctc-form K02897 RP-L25; large subunit ribosomal protein L25 D DK53_1778 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D DK53_1934 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D DK53_1208 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D DK53_1198 rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D DK53_1662 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D DK53_1711 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D DK53_2604 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D DK53_2037 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D DK53_1690 rpmJ; ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D DK53_2123 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D DK53_1793 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D DK53_1593 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D DK53_2126 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D DK53_1790 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D DK53_1590 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D DK53_2127 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D DK53_1789 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D DK53_1589 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:babu00970] D DK53_1791 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D DK53_2125 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D DK53_1591 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D DK53_41 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D DK53_1912 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D DK53_725 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D DK53_314 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D DK53_951 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D DK53_1956 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D DK53_2590 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D DK53_2834 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D DK53_801 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D DK53_2597 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D DK53_532 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D DK53_1568 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D DK53_1606 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D DK53_1257 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D DK53_1258 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D DK53_1233 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D DK53_953 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D DK53_2342 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D DK53_2222 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D DK53_1555 tRNA-His K14226 tRNA-His; tRNA His D DK53_1592 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D DK53_2124 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D DK53_1792 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D DK53_892 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D DK53_1036 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D DK53_1873 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D DK53_2189 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D DK53_1073 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D DK53_1066 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D DK53_1311 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D DK53_2626 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D DK53_1439 tRNA-Met K14230 tRNA-Met; tRNA Met D DK53_1553 tRNA-Met K14230 tRNA-Met; tRNA Met D DK53_1588 tRNA-Met K14230 tRNA-Met; tRNA Met D DK53_2128 tRNA-Met K14230 tRNA-Met; tRNA Met D DK53_1788 tRNA-Met K14230 tRNA-Met; tRNA Met D DK53_289 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D DK53_723 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D DK53_781 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D DK53_204 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D DK53_651 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D DK53_1780 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D DK53_2654 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D DK53_2171 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D DK53_299 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D DK53_926 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D DK53_2397 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D DK53_1231 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D DK53_1234 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D DK53_3088 tRNA-Val K14237 tRNA-Val; tRNA Val D DK53_800 tRNA-Val K14237 tRNA-Val; tRNA Val D DK53_950 tRNA-Val K14237 tRNA-Val; tRNA Val D DK53_1135 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D DK53_1004 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D DK53_590 amidase family protein K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D DK53_2619 gatA; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D DK53_894 gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D DK53_2618 gatC; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D DK53_1185 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D DK53_756 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D DK53_430 glyQ; glycine--tRNA ligase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D DK53_432 glyS; glycine--tRNA ligase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D DK53_1059 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D DK53_879 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D DK53_684 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D DK53_984 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D DK53_2206 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D DK53_935 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D DK53_1739 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D DK53_2945 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D DK53_2437 lysS; lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D DK53_871 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D DK53_821 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D DK53_2956 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D DK53_2040 pheS; phenylalanine--tRNA ligase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D DK53_2041 pheT; phenylalanine--tRNA ligase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D DK53_915 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D DK53_154 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:babu03060] D DK53_1196 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D DK53_1230 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D DK53_1126 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D DK53_1301 secD; export membrane protein SecD K12257 secDF; SecD/SecF fusion protein D DK53_885 secD; export membrane protein SecD K12257 secDF; SecD/SecF fusion protein D DK53_884 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D DK53_2217 yidC; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase D DK53_1868 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D DK53_1991 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D DK53_1756 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D DK53_1859 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D DK53_876 tatA; twin arginine-targeting translocase, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA D DK53_877 tatB; twin arginine-targeting protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB D DK53_878 tatC; twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC D DK53_669 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D DK53_161 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:babu04122] D DK53_919 aminotransferase class-V family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D DK53_1041 rhodanese-like domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D DK53_1951 sulfurtransferase TusA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D DK53_1542 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D DK53_701 moaE family protein K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D DK53_944 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D DK53_702 moaD; molybdopterin converting factor, subunit 1 K03636 moaD; sulfur-carrier protein D DK53_22 thiF family protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D DK53_1131 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D DK53_2708 mog; molybdenum cofactor biosynthesis MOG K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D DK53_222 thiS; thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein C 03050 Proteasome C 03018 RNA degradation [PATH:babu03018] D DK53_1765 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D DK53_905 ribonuclease, Rne/Rng family domain protein K08300 rne; ribonuclease E [EC:3.1.26.12] D DK53_1122 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D DK53_2082 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D DK53_1038 hypothetical protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D DK53_2608 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D DK53_136 hypothetical protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D DK53_1982 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D DK53_818 metallo-beta-lactamase superfamily protein K12574 rnj; ribonuclease J [EC:3.1.-.-] D DK53_2043 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D DK53_2949 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D DK53_1103 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D DK53_753 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D DK53_336 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D DK53_1510 poly A polymerase head domain protein K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:babu03030] D DK53_1990 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DK53_2234 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DK53_2591 exonuclease, DNA polymerase III, epsilon subunit family domain protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DK53_824 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D DK53_51 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DK53_983 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D DK53_1974 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D DK53_695 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D DK53_20 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D DK53_474 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D DK53_1445 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D DK53_1094 ssb4; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D DK53_499 RNase H family protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D DK53_418 ribonuclease HII family protein K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D DK53_135 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D DK53_1388 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:babu03410] D DK53_176 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D DK53_514 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D DK53_16 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D DK53_1599 hhH-GPD superbase excision DNA repair family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D DK53_2958 methyladenine glycosylase family protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D DK53_658 uracil DNA glycosylase superfamily protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D DK53_635 uracil-DNA glycosylase, 4 family protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D DK53_1922 exodeoxyribonuclease III family protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D DK53_867 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D DK53_135 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D DK53_1250 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DK53_1388 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:babu03420] D DK53_2634 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D DK53_1097 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D DK53_1472 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D DK53_704 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D DK53_1381 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D DK53_135 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D DK53_1388 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:babu03430] D DK53_159 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D DK53_2927 mutL; DNA mismatch repair MutL family protein K03572 mutL; DNA mismatch repair protein MutL D DK53_1381 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D DK53_2464 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D DK53_456 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DK53_1250 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DK53_1094 ssb4; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D DK53_824 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D DK53_20 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D DK53_51 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DK53_1974 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D DK53_983 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D DK53_1990 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DK53_2234 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DK53_2591 exonuclease, DNA polymerase III, epsilon subunit family domain protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DK53_695 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D DK53_1388 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:babu03440] D DK53_1250 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DK53_1094 ssb4; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D DK53_21 recF; DNA replication and repair RecF family protein K03629 recF; DNA replication and repair protein RecF D DK53_673 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D DK53_49 recR; recombination protein RecR K06187 recR; recombination protein RecR D DK53_1186 recA; protein RecA K03553 recA; recombination protein RecA D DK53_135 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D DK53_1651 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D DK53_1650 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D DK53_1652 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D DK53_2632 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D DK53_824 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D DK53_20 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D DK53_51 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DK53_1974 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D DK53_983 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D DK53_1990 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DK53_2234 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DK53_2591 exonuclease, DNA polymerase III, epsilon subunit family domain protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DK53_695 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D DK53_1736 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:babu02010] D DK53_1307 sulfate ABC transporter, sulfate-binding family protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D DK53_120 sulfate ABC transporter, sulfate-binding family protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D DK53_1306 cysT; sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D DK53_121 cysT; sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D DK53_1305 cysW; sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D DK53_122 cysW; sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D DK53_123 cysA; sulfate ABC transporter, ATP-binding family protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D DK53_2868 NMT1-like family protein K15553 ssuA; sulfonate transport system substrate-binding protein D DK53_3145 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein D DK53_2867 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein D DK53_3146 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D DK53_2866 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D DK53_219 NMT1-like family protein K15598 thiY; putative hydroxymethylpyrimidine transport system substrate-binding protein D DK53_217 binding--dependent transport system inner membrane component family protein K15599 thiX; putative hydroxymethylpyrimidine transport system permease protein D DK53_3047 modA; molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D DK53_3046 modB; molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein D DK53_3045 modC; molybdate ABC transporter, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D DK53_2522 bacterial extracellular solute-binding family protein K02012 afuA; iron(III) transport system substrate-binding protein D DK53_2501 bacterial extracellular solute-binding family protein K02012 afuA; iron(III) transport system substrate-binding protein D DK53_2523 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein D DK53_2502 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein D DK53_2521 ABC transporter family protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D DK53_2503 ABC transporter family protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D DK53_1699 thiB; thiamin/thiamine pyrophosphate ABC transporter, thiamin/thiamine pyrophospate-binding protein K02064 thiB; thiamine transport system substrate-binding protein D DK53_1700 thiP; thiamine/thiamine pyrophosphate ABC transporter, permease protein K02063 thiP; thiamine transport system permease protein D DK53_1701 thiQ; thiamine ABC transporter, ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15] D DK53_1562 bacterial extracellular solute-binding family protein K11073 potF; putrescine transport system substrate-binding protein D DK53_1558 binding--dependent transport system inner membrane component family protein K11074 potI; putrescine transport system permease protein D DK53_1560 putative spermidine/putrescine ABC transporter, permease component I protein K11075 potH; putrescine transport system permease protein D DK53_1561 polyamine ABC transporter, ATP-binding family protein K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D DK53_2140 bacterial extracellular solute-binding family protein K11077 attC; mannopine transport system substrate-binding protein D DK53_2139 binding--dependent transport system inner membrane component family protein K11078 attB; mannopine transport system permease protein D DK53_2138 binding--dependent transport system inner membrane component family protein K11079 attA2; mannopine transport system permease protein D DK53_2137 ABC transporter family protein K11080 attA1; mannopine transport system ATP-binding protein D DK53_1530 choX; choline ABC transporter, periplasmic binding family protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D DK53_2487 substrate binding domain of ABC-type glycine betaine transport system family protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D DK53_1531 choW; choline ABC transporter, permease protein K02001 proW; glycine betaine/proline transport system permease protein D DK53_2486 binding--dependent transport system inner membrane component family protein K02001 proW; glycine betaine/proline transport system permease protein D DK53_1532 choV; choline ABC transporter, ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D DK53_2485 proV; glycine betaine/L-proline transport ATP binding subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D DK53_231 substrate binding domain of ABC-type glycine betaine transport system family protein K05845 opuC; osmoprotectant transport system substrate-binding protein D DK53_228 binding--dependent transport system inner membrane component family protein K05846 opuBD; osmoprotectant transport system permease protein D DK53_230 putative osmoprotectant uptake system permease protein yehY K05846 opuBD; osmoprotectant transport system permease protein D DK53_229 ABC transporter family protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D DK53_2847 ABC transporter family protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D DK53_2686 ABC transporter family protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D DK53_246 ABC transporter family protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D DK53_2532 ABC transporter family protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D DK53_3151 ABC transporter family protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D DK53_2480 ABC transporter family protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D DK53_2690 bacterial extracellular solute-binding family protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein D DK53_2689 binding--dependent transport system inner membrane component family protein K10118 msmF; raffinose/stachyose/melibiose transport system permease protein D DK53_2688 binding--dependent transport system inner membrane component family protein K10119 msmG; raffinose/stachyose/melibiose transport system permease protein D DK53_2850 bacterial extracellular solute-binding family protein K10236 thuE; trehalose/maltose transport system substrate-binding protein D DK53_2849 binding--dependent transport system inner membrane component family protein K10237 thuF; trehalose/maltose transport system permease protein D DK53_2848 binding--dependent transport system inner membrane component family protein K10238 thuG; trehalose/maltose transport system permease protein D DK53_2301 sbpA; multiple sugar-binding periplasmic protein sbpA K10546 chvE; putative multiple sugar transport system substrate-binding protein D DK53_2303 branched-chain amino acid transport system / permease component family protein K10547 gguB; putative multiple sugar transport system permease protein D DK53_2302 ABC transporter family protein K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D DK53_1009 mce related family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D DK53_1007 STAS domain protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D DK53_1008 ABC transporter family protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D DK53_3120 basic membrane family protein K07335 bmpA; basic membrane protein A and related proteins D DK53_2647 basic membrane family protein K07335 bmpA; basic membrane protein A and related proteins D DK53_3122 branched-chain amino acid transport system / permease component family protein K23535 nupB; general nucleoside transport system permease protein D DK53_2645 branched-chain amino acid transport system / permease component family protein K23535 nupB; general nucleoside transport system permease protein D DK53_3123 branched-chain amino acid transport system / permease component family protein K23536 nupC; general nucleoside transport system permease protein D DK53_2646 branched-chain amino acid transport system / permease component family protein K23536 nupC; general nucleoside transport system permease protein D DK53_3121 ABC transporter family protein K23537 nupA; general nucleoside transport system ATP-binding protein D DK53_2644 ABC transporter family protein K23537 nupA; general nucleoside transport system ATP-binding protein D DK53_2530 binding--dependent transport system inner membrane component family protein K17316 gtsB; glucose/mannose transport system permease protein D DK53_2531 binding--dependent transport system inner membrane component family protein K17317 gtsC; glucose/mannose transport system permease protein D DK53_560 periplasmic binding s and sugar binding domain of LacI family protein K10439 rbsB; ribose transport system substrate-binding protein D DK53_2245 periplasmic binding s and sugar binding domain of LacI family protein K10439 rbsB; ribose transport system substrate-binding protein D DK53_559 branched-chain amino acid transport system / permease component family protein K10440 rbsC; ribose transport system permease protein D DK53_2247 branched-chain amino acid transport system / permease component family protein K10440 rbsC; ribose transport system permease protein D DK53_2248 branched-chain amino acid transport system / permease component family protein K10440 rbsC; ribose transport system permease protein D DK53_2246 ABC transporter family protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D DK53_558 ccmA; heme ABC exporter, ATP-binding protein CcmA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D DK53_2090 xylF; D-xylose ABC transporter, D-xylose-binding protein K10543 xylF; D-xylose transport system substrate-binding protein D DK53_2886 periplasmic binding s and sugar binding domain of LacI family protein K10543 xylF; D-xylose transport system substrate-binding protein D DK53_2088 branched-chain amino acid transport system / permease component family protein K10544 xylH; D-xylose transport system permease protein D DK53_2884 branched-chain amino acid transport system / permease component family protein K10544 xylH; D-xylose transport system permease protein D DK53_2089 xylG; D-xylose ABC transporter, ATP-binding protein K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10] D DK53_2885 ABC transporter family protein K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10] D DK53_2376 periplasmic binding s and sugar binding domain of LacI family protein K17202 eryG; erythritol transport system substrate-binding protein D DK53_2375 branched-chain amino acid transport system / permease component family protein K17203 eryF; erythritol transport system permease protein D DK53_2374 ccmA; heme ABC exporter, ATP-binding protein CcmA K17204 eryE; erythritol transport system ATP-binding protein D DK53_1583 periplasmic binding s and sugar binding domain of LacI family protein K17205 xltC; putative xylitol transport system substrate-binding protein D DK53_1584 branched-chain amino acid transport system / permease component family protein K17206 xltB; putative xylitol transport system permease protein D DK53_1585 ABC transporter family protein K17207 xltA; putative xylitol transport system ATP-binding protein D DK53_2560 bacterial extracellular solute-binding family protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D DK53_2559 binding--dependent transport system inner membrane component family protein K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D DK53_2558 binding--dependent transport system inner membrane component family protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D DK53_2557 ABC transporter family protein K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D DK53_2054 PBP superfamily domain protein K02040 pstS; phosphate transport system substrate-binding protein D DK53_2055 pstC; phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein D DK53_2056 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein D DK53_2057 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D DK53_2290 bacterial extracellular solute-binding s, 3 family protein K09969 aapJ; general L-amino acid transport system substrate-binding protein D DK53_746 bacterial extracellular solute-binding s, 3 family protein K09969 aapJ; general L-amino acid transport system substrate-binding protein D DK53_747 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K09970 aapQ; general L-amino acid transport system permease protein D DK53_749 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K09971 aapM; general L-amino acid transport system permease protein D DK53_750 ABC transporter family protein K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1] D DK53_1881 ABC transporter family protein K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1] D DK53_2539 bacterial extracellular solute-binding s, 3 family protein K02424 tcyA; L-cystine transport system substrate-binding protein D DK53_2538 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10009 tcyB; L-cystine transport system permease protein D DK53_2537 ABC transporter family protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1] D DK53_2780 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DK53_2788 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DK53_2285 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DK53_3106 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DK53_1718 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DK53_1720 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DK53_3141 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DK53_3161 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DK53_1273 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DK53_30 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DK53_2567 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DK53_2787 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DK53_2282 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DK53_3105 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DK53_1725 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DK53_2566 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DK53_3139 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DK53_3160 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DK53_2786 branched-chain amino acid transport system / permease component family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DK53_3159 branched-chain amino acid transport system / permease component family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DK53_2281 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D DK53_3104 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D DK53_3138 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D DK53_1724 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D DK53_2565 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D DK53_2284 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DK53_3103 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DK53_3137 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DK53_1723 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DK53_2564 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DK53_2785 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DK53_2283 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DK53_3102 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DK53_3136 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DK53_3158 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DK53_1722 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DK53_2563 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DK53_2279 lipo, YaeC family protein K02073 metQ; D-methionine transport system substrate-binding protein D DK53_7 lipo, YaeC family protein K02073 metQ; D-methionine transport system substrate-binding protein D DK53_2277 binding--dependent transport system inner membrane component family protein K02072 metI; D-methionine transport system permease protein D DK53_2278 ABC transporter family protein K02071 metN; D-methionine transport system ATP-binding protein D DK53_2671 bacterial extracellular solute-binding s, 5 Middle family protein K15580 oppA; oligopeptide transport system substrate-binding protein D DK53_2672 bacterial extracellular solute-binding s, 5 Middle family protein K15580 oppA; oligopeptide transport system substrate-binding protein D DK53_2673 binding--dependent transport system inner membrane component family protein K15581 oppB; oligopeptide transport system permease protein D DK53_2674 binding--dependent transport system inner membrane component family protein K15582 oppC; oligopeptide transport system permease protein D DK53_2675 nikE; nickel import ATP-binding protein NikE K10823 oppF; oligopeptide transport system ATP-binding protein D DK53_1537 bacterial extracellular solute-binding s, 5 Middle family protein K12368 dppA; dipeptide transport system substrate-binding protein D DK53_1536 binding--dependent transport system inner membrane component family protein K12369 dppB; dipeptide transport system permease protein D DK53_1535 binding--dependent transport system inner membrane component family protein K12370 dppC; dipeptide transport system permease protein D DK53_1534 ABC transporter family protein K12371 dppD; dipeptide transport system ATP-binding protein D DK53_1533 ABC transporter family protein K12372 dppF; dipeptide transport system ATP-binding protein D DK53_2424 bacterial extracellular solute-binding s, 5 Middle family protein K15584 nikA; nickel transport system substrate-binding protein D DK53_2425 bacterial extracellular solute-binding s, 5 Middle family protein K15584 nikA; nickel transport system substrate-binding protein D DK53_2426 nikB; nickel ABC transporter, permease subunit NikB K15585 nikB; nickel transport system permease protein D DK53_2427 nikC; nickel ABC transporter, permease subunit NikC K15586 nikC; nickel transport system permease protein D DK53_2428 nikD; nickel import ATP-binding protein NikD K15587 nikD; nickel transport system ATP-binding protein [EC:7.2.2.11] D DK53_2429 nikE; nickel import ATP-binding protein NikE K10824 nikE; nickel transport system ATP-binding protein [EC:7.2.2.11] D DK53_27 bacterial extracellular solute-binding s, 5 Middle family protein K13893 yejA; microcin C transport system substrate-binding protein D DK53_28 bacterial extracellular solute-binding s, 5 Middle family protein K13893 yejA; microcin C transport system substrate-binding protein D DK53_26 binding--dependent transport system inner membrane component family protein K13894 yejB; microcin C transport system permease protein D DK53_25 binding--dependent transport system inner membrane component family protein K13895 yejE; microcin C transport system permease protein D DK53_24 nikE; nickel import ATP-binding protein NikE K13896 yejF; microcin C transport system ATP-binding protein D DK53_2119 periplasmic solute binding family protein K09815 znuA; zinc transport system substrate-binding protein D DK53_2117 ABC 3 transport family protein K09816 znuB; zinc transport system permease protein D DK53_2118 ABC transporter family protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D DK53_1338 cobalt uptake substrate-specific transmembrane region family protein K02007 cbiM; cobalt/nickel transport system permease protein D DK53_1340 cbiQ; cobalt ABC transporter, permease protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein D DK53_1341 ABC transporter family protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein D DK53_1337 hypothetical protein K10094 cbiK; nickel transport protein D DK53_1339 putative cobalamin biosynthesis CbiM protein K16915 cbiL; nickel transport protein D DK53_526 bioY family protein K03523 bioY; biotin transport system substrate-specific component D DK53_1665 bioY family protein K03523 bioY; biotin transport system substrate-specific component D DK53_540 ABC-2 type transporter family protein K09690 wzm; homopolymeric O-antigen transport system permease protein D DK53_539 ABC transporter family protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D DK53_822 liporeleasing system, transmembrane , LolC/E family protein K09808 lolC_E; lipoprotein-releasing system permease protein D DK53_823 ABC transporter family protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D DK53_111 ccmD; heme exporter protein CcmD K02196 ccmD; heme exporter protein D D DK53_110 ccmC; heme exporter CcmC family protein K02195 ccmC; heme exporter protein C D DK53_109 ccmB; heme exporter protein CcmB K02194 ccmB; heme exporter protein B D DK53_108 ccmA; heme ABC exporter, ATP-binding protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D DK53_693 putative permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein D DK53_692 putative permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein D DK53_169 ABC transporter family protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D DK53_2874 ABC-2 transporter family protein K19341 nosY; Cu-processing system permease protein D DK53_2875 ABC transporter family protein K19340 nosF; Cu-processing system ATP-binding protein D DK53_1917 putative cell division protein FtsX K09811 ftsX; cell division transport system permease protein D DK53_1918 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D DK53_2192 ABC transporter family protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D DK53_467 ABC transporter family protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter D DK53_1501 ABC transporter family protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump D DK53_1502 ABC transporter family protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump D DK53_2697 cydC; thiol reductant ABC exporter, CydC subunit K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D DK53_2698 cydD; thiol reductant ABC exporter, CydD subunit K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D DK53_1624 ABC transporter family protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D DK53_1623 ftsX-like permease family protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D DK53_1453 ABC transporter transmembrane region 2 family protein K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein C 02060 Phosphotransferase system (PTS) [PATH:babu02060] D DK53_2014 phosphocarrier, HPr family protein K02784 ptsH; phosphocarrier protein HPr D DK53_2013 PTS system fructose IIA component family protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D DK53_1800 ptsP; phosphoenolpyruvate-protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] D DK53_172 ptsN; PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] C 03070 Bacterial secretion system [PATH:babu03070] D DK53_933 bepC; outer membrane efflux protein BepC K12340 tolC; outer membrane protein D DK53_1301 secD; export membrane protein SecD K12257 secDF; SecD/SecF fusion protein D DK53_885 secD; export membrane protein SecD K12257 secDF; SecD/SecF fusion protein D DK53_1230 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D DK53_1126 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D DK53_1196 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D DK53_884 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D DK53_2217 yidC; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase D DK53_1868 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D DK53_1859 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D DK53_1991 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D DK53_1756 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D DK53_876 tatA; twin arginine-targeting translocase, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA D DK53_877 tatB; twin arginine-targeting protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB D DK53_878 tatC; twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC D DK53_3065 transglycosylase SLT domain protein K03194 virB1; type IV secretion system protein VirB1 D DK53_3066 trbC/VIRB2 family protein K03197 virB2; type IV secretion system protein VirB2 D DK53_3067 type IV secretory pathway, VirB3-like family protein K03198 virB3; type IV secretion system protein VirB3 D DK53_3069 virB5; P-type DNA transfer protein VirB5 K03200 virB5; type IV secretion system protein VirB5 D DK53_3071 putative traI protein K03202 virB7; type IV secretion system protein VirB7 D DK53_3073 virB9; P-type conjugative transfer protein VirB9 K03204 virB9; type IV secretion system protein VirB9 D DK53_3070 trbL/VirB6 plasmid conjugal transfer family protein K03201 virB6; type IV secretion system protein VirB6 D DK53_3072 virB8; type IV secretion system protein virB8 K03203 virB8; type IV secretion system protein VirB8 D DK53_3074 bacterial conjugation TrbI-like family protein K03195 virB10; type IV secretion system protein VirB10 D DK53_3068 ptlC; type IV secretion system protein ptlC K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8] D DK53_3075 virB11; P-type DNA transfer ATPase VirB11 K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8] B B 09132 Signal transduction C 02020 Two-component system [PATH:babu02020] D DK53_338 his Kinase A domain protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D DK53_2059 phoB; phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D DK53_1184 phoA; alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D DK53_2054 PBP superfamily domain protein K02040 pstS; phosphate transport system substrate-binding protein D DK53_1480 HAMP domain protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D DK53_1479 hypothetical protein K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D DK53_626 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107] D DK53_1363 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107] D DK53_2093 fliC; flagellin K02406 fliC; flagellin D DK53_3008 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA D DK53_787 cytochrome oxidase assembly family protein K02259 COX15; heme a synthase [EC:1.17.99.9] D DK53_19 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D DK53_2628 hypothetical protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] D DK53_2011 HAMP domain protein K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3] D DK53_2010 response regulator K14981 chvI; two-component system, OmpR family, response regulator ChvI D DK53_2356 hpcH/HpaI aldolase/citrate lyase family protein K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D DK53_2973 hpcH/HpaI aldolase/citrate lyase family protein K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D DK53_377 bacterial regulatory s, luxR family protein K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL D DK53_2854 nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D DK53_2855 narH; nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D DK53_2857 narI; respiratory nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D DK53_2856 narJ; nitrate reductase molybdenum cofactor assembly chaperone K00373 narJ; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW D DK53_156 glnD; protein-P-II uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59] D DK53_993 glnB; nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1 D DK53_1109 his Kinase A domain protein K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D DK53_1108 ntrC; nitrogen regulation protein NR K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D DK53_2460 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DK53_2491 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DK53_992 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DK53_1107 sensory box protein K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D DK53_1106 bacterial regulatory , Fis family protein K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX D DK53_2752 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DK53_1709 phbA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DK53_2433 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DK53_170 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D DK53_631 sensory box protein K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3] D DK53_2603 pleD; response regulator K02488 pleD; two-component system, cell cycle response regulator [EC:2.7.7.65] D DK53_593 his Kinase A domain protein K11357 divJ; two-component system, cell cycle sensor histidine kinase DivJ [EC:2.7.13.3] D DK53_2602 divK; response regulator K11443 divK; two-component system, cell cycle response regulator DivK D DK53_1026 sensory box protein K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3] D DK53_1548 hypothetical protein K13588 chpT; histidine phosphotransferase ChpT D DK53_1549 ctrA; response regulator K13584 ctrA; two-component system, cell cycle response regulator CtrA D DK53_3087 response regulator K13589 cpdR; two-component system, cell cycle response regulator CpdR D DK53_2818 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D DK53_146 regB; sensor histidine kinase regB K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D DK53_149 regA; photosynthetic apparatus regulatory protein regA K15012 regA; two-component system, response regulator RegA D DK53_1500 petA; ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D DK53_1499 hypothetical protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D DK53_1498 cytochrome C1 family protein K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D DK53_2968 cycA; D-serine/D-alanine/glycine transporter K08738 CYC; cytochrome c D DK53_56 cytochrome c family protein K08738 CYC; cytochrome c D DK53_398 ccoN; cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D DK53_397 ccoO; cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D DK53_396 cbb3-type cytochrome oxidase component FixQ family protein K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV D DK53_395 ccoP; cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D DK53_2696 bacterial Cytochrome Ubiquinol Oxidase family protein K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D DK53_2695 cydB; cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D DK53_2694 cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7] D DK53_933 bepC; outer membrane efflux protein BepC K12340 tolC; outer membrane protein D DK53_2763 polysaccharide biosynthesis/export family protein K01991 wza; polysaccharide biosynthesis/export protein D DK53_784 polysaccharide biosynthesis/export family protein K01991 wza; polysaccharide biosynthesis/export protein D DK53_98 low molecular weight phosphotyrosine phosphatase family protein K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis [PATH:babu04148] D DK53_2338 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1] D DK53_3037 hypothetical protein K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D DK53_1500 petA; ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:babu02024] D DK53_1103 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D DK53_1000 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D DK53_1347 phenazine biosynthesis , PhzF family protein K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17] D DK53_2820 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D DK53_2819 amino acid permease family protein K20265 gadC; glutamate:GABA antiporter D DK53_2832 bacterial extracellular solute-binding family protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D DK53_3023 bacterial extracellular solute-binding family protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D DK53_2418 bacterial extracellular solute-binding family protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D DK53_2829 binding--dependent transport system inner membrane component family protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D DK53_3025 binding--dependent transport system inner membrane component family protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D DK53_2421 binding--dependent transport system inner membrane component family protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D DK53_2830 binding--dependent transport system inner membrane component family protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D DK53_3024 binding--dependent transport system inner membrane component family protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D DK53_2420 binding--dependent transport system inner membrane component family protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D DK53_2831 polyamine ABC transporter, ATP-binding family protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D DK53_3026 polyamine ABC transporter, ATP-binding family protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D DK53_2419 ABC transporter family protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D DK53_2780 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DK53_2788 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DK53_2285 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DK53_3106 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DK53_1718 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DK53_1720 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DK53_3141 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DK53_3161 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DK53_1273 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DK53_30 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DK53_2567 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DK53_2787 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DK53_2282 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DK53_3105 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DK53_1725 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DK53_2566 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DK53_3139 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DK53_3160 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DK53_2786 branched-chain amino acid transport system / permease component family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DK53_3159 branched-chain amino acid transport system / permease component family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DK53_2281 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D DK53_3104 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D DK53_3138 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D DK53_1724 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D DK53_2565 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D DK53_2284 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DK53_3103 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DK53_3137 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DK53_1723 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DK53_2564 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DK53_2785 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DK53_2283 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DK53_3102 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DK53_3136 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DK53_3158 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DK53_1722 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DK53_2563 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DK53_1594 bacterial transcriptional regulator family protein K20539 blcR; IclR family transcriptional regulator, blcABC operon repressor D DK53_330 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D DK53_2116 ferric uptake regulator family protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D DK53_768 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D DK53_2671 bacterial extracellular solute-binding s, 5 Middle family protein K15580 oppA; oligopeptide transport system substrate-binding protein D DK53_2672 bacterial extracellular solute-binding s, 5 Middle family protein K15580 oppA; oligopeptide transport system substrate-binding protein D DK53_2673 binding--dependent transport system inner membrane component family protein K15581 oppB; oligopeptide transport system permease protein D DK53_2674 binding--dependent transport system inner membrane component family protein K15582 oppC; oligopeptide transport system permease protein D DK53_2675 nikE; nickel import ATP-binding protein NikE K10823 oppF; oligopeptide transport system ATP-binding protein D DK53_2153 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D DK53_2160 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D DK53_2771 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D DK53_2637 transmembrane protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D DK53_2441 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D DK53_2227 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D DK53_2147 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D DK53_2152 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D DK53_2163 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D DK53_2772 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D DK53_2442 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D DK53_2228 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D DK53_2146 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D DK53_2151 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D DK53_2164 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D DK53_2773 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D DK53_2443 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D DK53_2229 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D DK53_2145 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D DK53_2444 ABC transporter family protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D DK53_2144 hypothetical protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D DK53_2150 hypothetical protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D DK53_2165 hypothetical protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D DK53_2230 hypothetical protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D DK53_2775 hypothetical protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D DK53_2231 ABC transporter family protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D DK53_2776 hypothetical protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D DK53_2166 hypothetical protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D DK53_2445 ABC transporter family protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D DK53_2149 hypothetical protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D DK53_2143 hypothetical protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D DK53_2217 yidC; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase D DK53_1301 secD; export membrane protein SecD K12257 secDF; SecD/SecF fusion protein D DK53_885 secD; export membrane protein SecD K12257 secDF; SecD/SecF fusion protein D DK53_1230 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D DK53_1126 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D DK53_1196 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D DK53_884 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D DK53_1868 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D DK53_1859 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D DK53_1991 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D DK53_1756 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:babu02030] D DK53_560 periplasmic binding s and sugar binding domain of LacI family protein K10439 rbsB; ribose transport system substrate-binding protein D DK53_2245 periplasmic binding s and sugar binding domain of LacI family protein K10439 rbsB; ribose transport system substrate-binding protein D DK53_1537 bacterial extracellular solute-binding s, 5 Middle family protein K12368 dppA; dipeptide transport system substrate-binding protein D DK53_3009 putative surface presentation of antigens (SPOA) protein K02416 fliM; flagellar motor switch protein FliM D DK53_3013 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D DK53_3008 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA D DK53_2096 membrane MotB of proton-channel complex MotA/MotB family protein K02557 motB; chemotaxis protein MotB D DK53_1660 ompA family protein K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:babu02040] D DK53_2986 flagellar hook-basal body complex FliE family protein K02408 fliE; flagellar hook-basal body complex protein FliE D DK53_2094 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D DK53_3005 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D DK53_2980 flagellar basal body-associated FliL family protein K02415 fliL; flagellar protein FliL D DK53_3009 putative surface presentation of antigens (SPOA) protein K02416 fliM; flagellar motor switch protein FliM D DK53_3013 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D DK53_2979 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D DK53_2107 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D DK53_2110 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D DK53_2109 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D DK53_3016 flhB HrpN YscU SpaS family protein K02401 flhB; flagellar biosynthesis protein FlhB D DK53_2984 flgA; flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D DK53_2988 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D DK53_2987 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D DK53_2106 hypothetical protein K02389 flgD; flagellar basal-body rod modification protein FlgD D DK53_2101 flgE; flagellar hook protein flgE K02390 flgE; flagellar hook protein FlgE D DK53_3006 flgF; flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D DK53_2985 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D DK53_2981 flagellar L-ring family protein K02393 flgH; flagellar L-ring protein FlgH D DK53_2983 flagellar P-ring family protein K02394 flgI; flagellar P-ring protein FlgI D DK53_2112 rod binding family protein K02395 flgJ; peptidoglycan hydrolase FlgJ D DK53_2102 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D DK53_2103 hypothetical protein K02397 flgL; flagellar hook-associated protein 3 FlgL D DK53_2093 fliC; flagellin K02406 fliC; flagellin D DK53_3008 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA D DK53_2096 membrane MotB of proton-channel complex MotA/MotB family protein K02557 motB; chemotaxis protein MotB D DK53_1660 ompA family protein K02557 motB; chemotaxis protein MotB D DK53_2097 putative chemotaxis protein K10564 motC; chemotaxis protein MotC D DK53_2098 flagellar hook-length control FliK family protein K10565 motD; chemotaxis protein MotD D DK53_2539 bacterial extracellular solute-binding s, 3 family protein K02424 tcyA; L-cystine transport system substrate-binding protein D DK53_1444 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D DK53_170 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D DK53_1122 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism [PATH:babu04980] D DK53_1896 cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D DK53_1175 hypothetical protein K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D DK53_198 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:babu01501] D DK53_873 hypothetical protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D DK53_2671 bacterial extracellular solute-binding s, 5 Middle family protein K15580 oppA; oligopeptide transport system substrate-binding protein D DK53_2672 bacterial extracellular solute-binding s, 5 Middle family protein K15580 oppA; oligopeptide transport system substrate-binding protein D DK53_2673 binding--dependent transport system inner membrane component family protein K15581 oppB; oligopeptide transport system permease protein D DK53_2674 binding--dependent transport system inner membrane component family protein K15582 oppC; oligopeptide transport system permease protein D DK53_2675 nikE; nickel import ATP-binding protein NikE K10823 oppF; oligopeptide transport system ATP-binding protein D DK53_2823 bepF; efflux pump periplasmic linker BepF K03585 acrA; membrane fusion protein, multidrug efflux system D DK53_332 bepD; efflux pump periplasmic linker BepD K03585 acrA; membrane fusion protein, multidrug efflux system D DK53_1080 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D DK53_333 bepE; efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump D DK53_1079 acrB/AcrD/AcrF family protein K18138 acrB; multidrug efflux pump D DK53_933 bepC; outer membrane efflux protein BepC K12340 tolC; outer membrane protein D DK53_599 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D DK53_130 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D DK53_907 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D DK53_1404 penicillin binding transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:babu01502] D DK53_1251 ddlA; D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D DK53_1395 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D DK53_2315 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D DK53_1402 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D DK53_1401 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D DK53_1398 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:babu01503] D DK53_1870 hypothetical protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D DK53_1871 sulfatase family protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D DK53_906 amiB; N-acetylmuramoyl-l-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D DK53_626 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107] D DK53_1363 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107] D DK53_2823 bepF; efflux pump periplasmic linker BepF K03585 acrA; membrane fusion protein, multidrug efflux system D DK53_332 bepD; efflux pump periplasmic linker BepD K03585 acrA; membrane fusion protein, multidrug efflux system D DK53_1080 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D DK53_333 bepE; efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump D DK53_1079 acrB/AcrD/AcrF family protein K18138 acrB; multidrug efflux pump D DK53_933 bepC; outer membrane efflux protein BepC K12340 tolC; outer membrane protein D DK53_1139 lpxA; acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D DK53_2628 hypothetical protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:babu01000] C 01001 Protein kinases [BR:babu01001] D DK53_2764 chain length determinant family protein K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3] D DK53_338 his Kinase A domain protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D DK53_1480 HAMP domain protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D DK53_2011 HAMP domain protein K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3] D DK53_2918 HAMP domain protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D DK53_376 histidine kinase family protein K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3] D DK53_1109 his Kinase A domain protein K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D DK53_1107 sensory box protein K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D DK53_631 sensory box protein K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3] D DK53_593 his Kinase A domain protein K11357 divJ; two-component system, cell cycle sensor histidine kinase DivJ [EC:2.7.13.3] D DK53_1026 sensory box protein K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3] D DK53_146 regB; sensor histidine kinase regB K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:babu01009] D DK53_2015 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D DK53_1361 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:babu01002] D DK53_161 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D DK53_2800 guaA; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D DK53_2260 peptidase C26 family protein K07010 K07010; putative glutamine amidotransferase D DK53_471 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D DK53_3080 glutamine amidotransferases class-II family protein K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D DK53_2631 glmS; glutamine-fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D DK53_2325 SIS domain protein K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D DK53_1181 intracellular protease, PfpI family protein K05520 yhbO; deglycase [EC:3.5.1.124] D DK53_1432 linear amide C-N hydrolase, choloylglycine hydrolase family protein K01442 cbh; choloylglycine hydrolase [EC:3.5.1.24] D DK53_765 L,D-transpeptidase catalytic domain protein K21470 ycbB; L,D-transpeptidase YcbB D DK53_632 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D DK53_2359 peptidase M3 family protein K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5] D DK53_3053 oligoendopeptidase, pepF/M3 family protein K08602 pepF; oligoendopeptidase F [EC:3.4.24.-] D DK53_2937 peptidase M16 inactive domain protein K07263 pqqL; zinc protease [EC:3.4.24.-] D DK53_2939 peptidase M16 inactive domain protein K07263 pqqL; zinc protease [EC:3.4.24.-] D DK53_694 hypothetical protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D DK53_14 hypothetical protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D DK53_2561 dipeptidase AC, Metallo peptidase, MEROPS family M19 K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D DK53_2209 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D DK53_1261 map; methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D DK53_1387 metallopeptidase M24 family protein K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D DK53_2062 thermophilic metalloprotease family protein K19689 ampS; aminopeptidase [EC:3.4.11.-] D DK53_1640 hflB; ATP-dependent metallopeptidase HflB family protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D DK53_1745 peptidase M48 family protein K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D DK53_1143 rseP; RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D DK53_2195 penicillin-insensitive murein endopeptidase family protein K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-] D DK53_2291 dap; D-aminopeptidase K01266 dmpA; D-aminopeptidase [EC:3.4.11.19] D DK53_2678 peptidase S58 family protein K01266 dmpA; D-aminopeptidase [EC:3.4.11.19] D DK53_626 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107] D DK53_1363 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107] D DK53_585 prolyl oligopeptidase family protein K01354 ptrB; oligopeptidase B [EC:3.4.21.83] D DK53_981 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D DK53_1101 clp protease family protein K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D DK53_1099 lon; ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D DK53_1134 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D DK53_669 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D DK53_353 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D DK53_1766 hypothetical protein K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D DK53_2154 acyII; penicillin acylase 2 K01434 pac; penicillin G amidase [EC:3.5.1.11] D DK53_166 sppA; signal peptide peptidase SppA, 36K type K04773 sppA; protease IV [EC:3.4.21.-] D DK53_604 phage prohead protease, HK97 family K06904 GP4; Escherichia/Staphylococcus phage prohead protease D DK53_1999 hslV; ATP-dependent protease HslVU, peptidase subunit K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D DK53_2865 peptidase U32 family protein K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV D DK53_2864 peptidase U32 family protein K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU D DK53_2934 modulator of DNA gyrase family protein K03592 pmbA; PmbA protein D DK53_487 modulator of DNA gyrase family protein K03568 tldD; TldD protein D DK53_1365 hflC; HflC protein K04087 hflC; modulator of FtsH protease HflC D DK53_1366 hflK; HflK protein K04088 hflK; modulator of FtsH protease HflK C 01003 Glycosyltransferases [BR:babu01003] D DK53_1712 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D DK53_599 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D DK53_130 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D DK53_907 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D DK53_124 hypothetical protein K13688 chvB; cyclic beta-1,2-glucan glucanotransferase [EC:2.4.1.397] C 01005 Lipopolysaccharide biosynthesis proteins [BR:babu01005] D DK53_1139 lpxA; acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D DK53_1137 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D DK53_1391 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D DK53_1141 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D DK53_1138 hypothetical protein K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D DK53_2929 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D DK53_847 bacterial lipid A biosynthesis acyltransferase family protein K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D DK53_2930 3-Deoxy-D-manno-octulosonic-acid transferase family protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D DK53_1870 hypothetical protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D DK53_1871 sulfatase family protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D DK53_1123 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D DK53_55 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D DK53_3061 sugar isomerase, KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D DK53_1464 glycosyl transferases group 1 family protein K12989 lpcC; mannosyltransferase [EC:2.4.1.-] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:babu01011] D DK53_297 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D DK53_1396 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D DK53_1397 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D DK53_1400 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D DK53_1403 murE; UDP-N-acetylmuramyl-tripeptide synthetase family protein K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D DK53_1251 ddlA; D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D DK53_1395 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D DK53_2315 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D DK53_1179 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D DK53_1401 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D DK53_1398 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D DK53_2199 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D DK53_155 mviN; integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D DK53_599 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D DK53_130 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D DK53_907 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D DK53_1404 penicillin binding transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D DK53_981 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D DK53_1712 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D DK53_765 L,D-transpeptidase catalytic domain protein K21470 ycbB; L,D-transpeptidase YcbB D DK53_2195 penicillin-insensitive murein endopeptidase family protein K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-] D DK53_655 transglycosylase SLT domain protein K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D DK53_1994 mltA; membrane-bound lytic murein transglycosylase K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29] D DK53_3064 lytic murein transglycosylase family protein K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D DK53_484 yceG-like family protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D DK53_2052 rlpA; rare lipoA family protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D DK53_980 rlpA; rare lipoA family protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D DK53_906 amiB; N-acetylmuramoyl-l-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:babu01004] D DK53_480 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D DK53_2714 3-Oxoacyl-[acyl-carrier-(ACP)] synthase III family protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D DK53_777 fabH; 3-oxoacyl-[acyl-carrier-] synthase III family protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D DK53_4 hypothetical protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D DK53_483 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D DK53_849 hypothetical protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D DK53_850 hypothetical protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D DK53_2784 3-beta hydroxysteroid dehydrogenase/isomerase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DK53_481 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DK53_3100 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DK53_2451 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DK53_2226 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DK53_5 fabA; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D DK53_1140 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D DK53_446 short chain dehydrogenase family protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D DK53_3 short chain dehydrogenase family protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D DK53_99 GDSL-like Lipase/Acylhydrolase family protein K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D DK53_1825 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D DK53_1470 thioesterase superfamily protein K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] D DK53_2750 AMP-binding enzyme family protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D DK53_1743 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D DK53_1676 AMP-binding enzyme family protein K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17] D DK53_36 acetoacetate-CoA ligase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16] D DK53_330 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D DK53_776 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D DK53_2612 plsY; acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D DK53_1915 acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins [BR:babu01008] D DK53_3116 entB; isochorismatase K01252 entB; bifunctional isochorismate lyase / aryl carrier protein [EC:3.3.2.1 6.3.2.14] D DK53_3119 4'-phosphopantetheinyl transferase superfamily protein K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-] D DK53_3115 (2,3-dihydroxybenzoyl)adenylate synthase K02363 entE; 2,3-dihydroxybenzoate---[aryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.71] D DK53_3113 condensation domain protein K02364 entF; L-serine---[L-seryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.72] C 01006 Prenyltransferases [BR:babu01006] D DK53_1713 ispA; geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D DK53_428 polyprenyl synthetase family protein K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D DK53_1145 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D DK53_887 squalene/phytoene synthase family protein K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32] D DK53_1360 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D DK53_442 ubiA; 4-hydroxybenzoate polyprenyl transferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D DK53_491 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] C 01007 Amino acid related enzymes [BR:babu01007] D DK53_2437 lysS; lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D DK53_1135 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D DK53_1004 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D DK53_1600 tRNA synthetases class I (E and Q), catalytic domain protein K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D DK53_915 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D DK53_154 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D DK53_684 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D DK53_871 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D DK53_984 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D DK53_2945 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D DK53_935 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D DK53_1739 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D DK53_756 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D DK53_2956 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D DK53_430 glyQ; glycine--tRNA ligase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D DK53_432 glyS; glycine--tRNA ligase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D DK53_879 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D DK53_821 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D DK53_1059 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D DK53_1185 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D DK53_2040 pheS; phenylalanine--tRNA ligase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D DK53_2041 pheT; phenylalanine--tRNA ligase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D DK53_1457 beta-eliminating lyase family protein K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D DK53_1254 aminotransferase class I and II family protein K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-] D DK53_1908 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D DK53_648 aminotransferase class I and II family protein K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D DK53_357 hemA; 5-aminolevulinic acid synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37] D DK53_2711 aminotransferase class I and II family protein K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D DK53_2312 aminotransferase class-III family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D DK53_340 argD; transaminase, acetylornithine/succinylornithine family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D DK53_2713 bioA; adenosylmethionine-8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D DK53_2135 aminotransferase class-III family protein K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D DK53_2304 aminotransferase class IV family protein K00824 dat; D-alanine transaminase [EC:2.6.1.21] D DK53_2550 aminotransferase class IV family protein K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D DK53_1636 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D DK53_541 perosamine synthetase K13010 per; perosamine synthetase [EC:2.6.1.102] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:babu00194] D DK53_1730 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D DK53_1731 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D DK53_1732 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D DK53_1733 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D DK53_1734 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D DK53_416 plant ATP synthase F0 family protein K02109 ATPF0B; F-type H+-transporting ATPase subunit b D DK53_417 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D DK53_415 ATP synthase subunit C family protein K02110 ATPF0C; F-type H+-transporting ATPase subunit c D DK53_414 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D DK53_413 F0F1-ATPase subunit family protein K02116 atpI; ATP synthase protein I B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:babu03000] D DK53_2576 helix-turn-helix domain protein K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D DK53_2349 methylated-DNA-[]-cysteine S-methyltransferase family protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D DK53_403 methylated-DNA-[]-cysteine S-methyltransferase family protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D DK53_2331 bacterial regulatory helix-turn-helix , lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D DK53_2574 pcaQ; pca operon transcription factor PcaQ K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator D DK53_2807 bacterial regulatory helix-turn-helix , lysR family protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D DK53_2512 bacterial regulatory helix-turn-helix , lysR family protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D DK53_2431 lysR substrate binding domain protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D DK53_207 deoR-like helix-turn-helix domain protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D DK53_2851 periplasmic binding s and sugar binding domain of LacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D DK53_565 periplasmic binding s and sugar binding domain of LacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D DK53_214 periplasmic binding s and sugar binding domain of LacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D DK53_2887 bacterial regulatory s, lacI family protein K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D DK53_1092 phnF; phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D DK53_2311 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D DK53_2693 UTRA domain protein K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D DK53_2324 UTRA domain protein K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D DK53_3155 UTRA domain protein K03710 K03710; GntR family transcriptional regulator D DK53_2965 pdhR; pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D DK53_569 betI; transcriptional repressor BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D DK53_331 bepR; HTH-type transcriptional repressor BepR K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D DK53_321 bacterial regulatory s, tetR family protein K09017 rutR; TetR/AcrR family transcriptional regulator D DK53_2739 bacterial regulatory s, tetR family protein K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity D DK53_1525 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D DK53_2499 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D DK53_1627 asnC family protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D DK53_863 asnC family protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D DK53_2455 asnC family protein K26601 azlB; Lrp/AsnC family transcriptional regulator, repressor for azl operon D DK53_3017 vjbR; HTH-type quorum sensing-dependent transcriptional regulator vjbR K21697 vjbR; LuxR family transcriptional regulator, quorum-sensing system regulator VjbR D DK53_1729 marR family protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D DK53_2467 marR family protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D DK53_2730 iclR helix-turn-helix domain protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D DK53_2352 ohrR; transcriptional regulator OhrR K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D DK53_226 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D DK53_1607 ferric uptake regulator family protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D DK53_2116 ferric uptake regulator family protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D DK53_6 ferric uptake regulator family protein K09826 irr; Fur family transcriptional regulator, iron response regulator D DK53_2577 beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D DK53_1594 bacterial transcriptional regulator family protein K20539 blcR; IclR family transcriptional regulator, blcABC operon repressor D DK53_663 aadR; transcriptional activatory protein AadR K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D DK53_2852 cyclic nucleotide-binding domain protein K13642 ftrB; CRP/FNR family transcriptional regulator, transcriptional activator FtrB D DK53_2871 cyclic nucleotide-binding domain protein K21564 nnrR; CRP/FNR family transcriptional regulator, nitrogen oxide reductase regulator D DK53_2888 cyclic nucleotide-binding domain protein K21564 nnrR; CRP/FNR family transcriptional regulator, nitrogen oxide reductase regulator D DK53_2652 Rrf2 family protein K13772 rirA; Rrf2 family transcriptional regulator, iron-responsive regulator D DK53_1171 helix-turn-helix family protein K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator D DK53_1563 hypothetical protein K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator D DK53_817 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D DK53_2423 nikR; nickel-responsive transcriptional regulator NikR K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator D DK53_2500 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D DK53_2878 4Fe-4S binding domain protein K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator D DK53_143 frmR; transcriptional repressor frmR K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon D DK53_1943 bolA-like family protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D DK53_3129 repB; plasmid partitioning protein RepB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D DK53_1975 ParB/RepB/Spo0J family partition domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D DK53_1705 carD-like/TRCF domain protein K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D DK53_181 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D DK53_218 tenA; thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D DK53_2600 hypothetical protein K06140 rnk; regulator of nucleoside diphosphate kinase D DK53_502 hypothetical protein K07735 algH; putative transcriptional regulator D DK53_1023 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D DK53_767 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D DK53_866 sel1 repeat family protein K25885 exoR; exopolysaccharide production negative regulator C 03021 Transcription machinery [BR:babu03021] D DK53_1192 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D DK53_1224 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D DK53_1223 DNA-directed RNA polymerase, beta'' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D DK53_660 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D DK53_1444 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D DK53_1612 RNA polymerase sigma factor, sigma-70 family protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D DK53_3109 RNA polymerase sigma factor, sigma-70 family protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D DK53_1704 RNA polymerase sigma factor, sigma-70 family protein K03089 rpoH; RNA polymerase sigma-32 factor D DK53_1603 rpoH; alternative sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor D DK53_170 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D DK53_2076 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA D DK53_771 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D DK53_1229 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG D DK53_1023 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D DK53_1465 greA; transcription elongation factor GreA domain protein K03624 greA; transcription elongation factor GreA D DK53_1982 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:babu03019] D DK53_905 ribonuclease, Rne/Rng family domain protein K08300 rne; ribonuclease E [EC:3.1.26.12] D DK53_670 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D DK53_818 metallo-beta-lactamase superfamily protein K12574 rnj; ribonuclease J [EC:3.1.-.-] D DK53_2608 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D DK53_1038 hypothetical protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D DK53_136 hypothetical protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D DK53_1122 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D DK53_2082 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D DK53_1982 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D DK53_2043 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D DK53_2949 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D DK53_1103 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D DK53_753 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D DK53_336 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D DK53_1510 poly A polymerase head domain protein K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D DK53_1765 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D DK53_144 hrpB; ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6] C 03041 Spliceosome C 03011 Ribosome [BR:babu03011] D DK53_45 rpsA; ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D DK53_1149 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D DK53_1210 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D DK53_828 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D DK53_1199 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D DK53_479 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D DK53_1220 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D DK53_1202 ribosomal S8 family protein K02994 RP-S8; small subunit ribosomal protein S8 D DK53_790 ribosomal S9/S16 family protein K02996 RP-S9; small subunit ribosomal protein S9 D DK53_1217 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D DK53_1193 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D DK53_1221 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D DK53_1194 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D DK53_1203 ribosomal S14p/S29e family protein K02954 RP-S14; small subunit ribosomal protein S14 D DK53_2081 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D DK53_1754 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D DK53_1207 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D DK53_478 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D DK53_1212 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D DK53_18 rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D DK53_2274 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D DK53_1227 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D DK53_1213 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D DK53_1216 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D DK53_1215 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D DK53_1204 ribosomal L5 family protein K02931 RP-L5; large subunit ribosomal protein L5 D DK53_1201 rplF; ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D DK53_476 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D DK53_1226 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D DK53_1228 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D DK53_1225 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D DK53_791 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D DK53_1206 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D DK53_1197 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D DK53_1209 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D DK53_1191 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D DK53_1200 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D DK53_1834 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D DK53_2038 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D DK53_1779 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D DK53_1211 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D DK53_1214 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D DK53_1205 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D DK53_1778 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D DK53_1934 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D DK53_1208 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D DK53_1198 rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D DK53_1662 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D DK53_1711 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D DK53_2604 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D DK53_2037 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D DK53_1690 rpmJ; ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D DK53_1491 ribosomal protein L25, Ctc-form K02897 RP-L25; large subunit ribosomal protein L25 D DK53_2127 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D DK53_1789 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D DK53_1589 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D DK53_2123 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D DK53_1793 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D DK53_1593 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D DK53_2126 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D DK53_1790 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D DK53_1590 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:babu03009] D DK53_670 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D DK53_671 era; GTP-binding protein Era K03595 era; GTPase D DK53_1774 cgtA; Obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-] D DK53_1023 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D DK53_2076 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA D DK53_771 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D DK53_1229 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG D DK53_688 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D DK53_2803 ubiE/COQ5 methyltransferase family protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D DK53_1746 nusB family protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D DK53_1 methyltransferase small domain protein K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D DK53_2940 RNA methyltransferase, RsmD family K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D DK53_2466 RNA methyltransferase, RsmE family protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D DK53_1977 gidB; 16S rRNA (guanine(527)-N(7))-methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D DK53_1406 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D DK53_187 tetrapyrrole (Corrin/Porphyrin) Methylases family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D DK53_462 hemolysin TlyA family protein K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D DK53_1235 RNA 2'-O ribose methyltransferase substrate binding family protein K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D DK53_2535 ftsJ-like methyltransferase family protein K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D DK53_1769 putative SPOUT methyltransferase family protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D DK53_163 SAM dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D DK53_710 ribosomal RNA small subunit methyltransferase D, RsmJ family protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D DK53_91 rlmN; 23S rRNA methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D DK53_463 methyltransferase small domain protein K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D DK53_2941 pseudouridine synthase family protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D DK53_988 pseudouridine synthase, RluA family protein K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D DK53_1604 pseudouridine synthase, RluA family protein K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D DK53_2065 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D DK53_504 acetyltransferase family protein K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] D DK53_1843 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM D DK53_2648 rimO; ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] D DK53_1385 ribosomal L11 methyltransferase family protein K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D DK53_905 ribonuclease, Rne/Rng family domain protein K08300 rne; ribonuclease E [EC:3.1.26.12] D DK53_2615 hypothetical protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D DK53_136 hypothetical protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D DK53_410 engA; ribosome-associated GTPase EngA K03977 engA; GTPase D DK53_1102 hflX; GTP-binding protein HflX K03665 hflX; GTPase D DK53_433 tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D DK53_661 rsh; GTP pyrophosphokinase rsh K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D DK53_2079 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D DK53_2075 hypothetical protein K09748 rimP; ribosome maturation factor RimP D DK53_1770 oligomerization domain protein K09710 ybeB; ribosome-associated protein D DK53_2069 putative rRNA maturation factor YbeY K07042 ybeY; probable rRNA maturation factor D DK53_171 raiA; ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor D DK53_1493 50S ribosome-binding GTPase family protein K06942 ychF; ribosome-binding ATPase C 03016 Transfer RNA biogenesis [BR:babu03016] D DK53_708 ribonuclease T2 family protein K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19] D DK53_1135 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D DK53_1004 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D DK53_821 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D DK53_2945 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D DK53_1739 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D DK53_984 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D DK53_871 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D DK53_756 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D DK53_1185 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D DK53_1059 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D DK53_879 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D DK53_684 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D DK53_935 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D DK53_2956 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D DK53_2040 pheS; phenylalanine--tRNA ligase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D DK53_2041 pheT; phenylalanine--tRNA ligase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D DK53_915 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D DK53_154 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D DK53_1040 threonyl and Alanyl tRNA synthetase second additional domain protein K07050 AARSD1; misacylated tRNA(Ala) deacylase [EC:3.1.1.-] D DK53_1155 hit-like protein involved in cell-cycle regulation K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D DK53_2074 methyltransferase family protein K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D DK53_2207 truA; tRNA pseudouridine(38-40) synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D DK53_2080 truB; tRNA pseudouridine(55) synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D DK53_919 aminotransferase class-V family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D DK53_433 tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D DK53_1360 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D DK53_1979 trmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D DK53_1978 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D DK53_203 cysQ; 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D DK53_2218 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D DK53_182 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D DK53_755 rnd; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5] D DK53_133 3'-5' exonuclease family protein K03684 rnd; ribonuclease D [EC:3.1.13.5] D DK53_97 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D DK53_2437 lysS; lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D DK53_430 glyQ; glycine--tRNA ligase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D DK53_432 glyS; glycine--tRNA ligase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D DK53_1600 tRNA synthetases class I (E and Q), catalytic domain protein K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D DK53_2343 DNA-binding protein, putative K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-] D DK53_2942 codA; cytidine and deoxycytidylate deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D DK53_860 dusA; tRNA dihydrouridine synthase A family protein K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-] D DK53_2067 miaB; tRNA-i(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D DK53_1858 radical SAM methylthiotransferase, MiaB/RimO family protein K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5] D DK53_1180 RNA methyltransferase, TrmH , group 1 family protein K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-] D DK53_888 trmFO; m(5)U-54 methyltransferase K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] D DK53_1842 trmD; tRNA (guanine(37)-N(1))-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D DK53_1503 spoU rRNA Methylase family protein K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D DK53_162 RNA 2'-O ribose methyltransferase substrate binding family protein K03437 spoU; RNA methyltransferase, TrmH family D DK53_1542 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D DK53_829 PP-loop family protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D DK53_1951 sulfurtransferase TusA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D DK53_929 sufA; FeS assembly scaffold SufA K13628 iscA; iron-sulfur cluster assembly protein D DK53_675 aminomethyltransferase folate-binding domain protein K06980 ygfZ; tRNA-modifying protein YgfZ D DK53_1083 queA; tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D DK53_1893 queC; queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D DK53_1894 queD; queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D DK53_1895 queE; 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D DK53_1168 queF; 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D DK53_2197 queG; epoxyqueuosine reductase K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D DK53_1082 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D DK53_968 tRNA-guanine transglycosylase family protein K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D DK53_1641 tilS; tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D DK53_2064 yeaZ; tRNA threonylcarbamoyl adenosine modification protein YeaZ K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D DK53_1816 tRNA threonylcarbamoyl adenosine modification protein YgjD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D DK53_2608 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D DK53_2082 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:babu03012] D DK53_2078 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D DK53_2035 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D DK53_697 ABC transporter family protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D DK53_1148 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts D DK53_1218 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D DK53_1232 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D DK53_1219 fusA; translation elongation factor G K02355 fusA; elongation factor G D DK53_1799 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D DK53_1146 frr; ribosome recycling factor K02838 frr; ribosome recycling factor D DK53_1798 prmC; protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D DK53_1492 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D DK53_292 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D DK53_1657 efp; translation elongation factor P K02356 efp; elongation factor P D DK53_908 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 D DK53_2179 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3 D DK53_2007 RF-1 domain protein K15034 yaeJ; ribosome-associated protein C 03110 Chaperones and folding catalysts [BR:babu03110] D DK53_1156 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA D DK53_1796 clpB; ATP-dependent chaperone protein ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D DK53_1100 clpX; ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D DK53_1998 hslU; ATP-dependent protease HslVU, ATPase subunit K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D DK53_2043 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D DK53_411 hsp70 family protein K04046 yegD; hypothetical chaperone protein D DK53_2949 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D DK53_2044 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D DK53_1411 dnaJ domain protein K05801 djlA; DnaJ like chaperone protein D DK53_342 hsp33 family protein K04083 hslO; molecular chaperone Hsp33 D DK53_180 grpE family protein K03687 GRPE; molecular chaperone GrpE D DK53_3082 hsp20/alpha crystallin family protein K04080 ibpA; molecular chaperone IbpA D DK53_1707 S4 domain protein K04762 hslR; ribosome-associated heat shock protein Hsp15 D DK53_2948 chaperonin 10 Kd subunit K04078 groES; chaperonin GroES D DK53_626 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107] D DK53_1363 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107] D DK53_1640 hflB; ATP-dependent metallopeptidase HflB family protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D DK53_414 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D DK53_1991 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D DK53_2817 hdeA; chaperone-like protein hdeA K19777 hdeA; acid stress chaperone HdeA D DK53_69 hypothetical protein K09796 pccA; periplasmic copper chaperone A D DK53_1128 PPIC-type PPIASE domain protein K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] D DK53_2858 PPIC-type PPIASE domain protein K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D DK53_1867 PPIC-type PPIASE domain protein K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D DK53_690 hypothetical protein K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] D DK53_2021 trxA; thioredoxin K03671 TXN; thioredoxin D DK53_2344 trxA; thioredoxin K05838 ybbN; putative thioredoxin D DK53_1806 grxC; glutaredoxin 3 K03676 grxC; glutaredoxin 3 D DK53_833 grxD; monothiol glutaredoxin, Grx4 family K07390 grxD; monothiol glutaredoxin D DK53_112 cycY; disulfide interchange protein CycY K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE C 04131 Membrane trafficking [BR:babu04131] D DK53_699 nucleoside diphosphate kinase family protein K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D DK53_1673 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D DK53_2190 gpm1; phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D DK53_1692 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D DK53_1749 major Facilitator Superfamily protein K06902 UMF1; MFS transporter, UMF1 family C 04121 Ubiquitin system C 03051 Proteasome C 03032 DNA replication proteins [BR:babu03032] D DK53_499 RNase H family protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D DK53_1098 hupB; DNA-binding protein HRm K03530 hupB; DNA-binding protein HU-beta D DK53_778 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D DK53_165 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D DK53_19 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D DK53_474 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D DK53_1445 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D DK53_3128 hypothetical protein K18996 repC; replication initiation protein RepC D DK53_1094 ssb4; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D DK53_824 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D DK53_20 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D DK53_695 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D DK53_1974 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D DK53_983 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D DK53_1990 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DK53_2234 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DK53_2591 exonuclease, DNA polymerase III, epsilon subunit family domain protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DK53_51 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DK53_418 ribonuclease HII family protein K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D DK53_135 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D DK53_1388 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DK53_1088 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D DK53_137 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D DK53_758 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D DK53_2621 parE; DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D DK53_2609 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:babu03036] D DK53_670 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D DK53_1098 hupB; DNA-binding protein HRm K03530 hupB; DNA-binding protein HU-beta D DK53_778 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D DK53_165 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D DK53_19 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D DK53_2639 hemimethylated DNA binding domain protein K11940 hspQ; heat shock protein HspQ D DK53_2063 dps; DNA protection during starvation protein K04047 dps; starvation-inducible DNA-binding protein D DK53_1103 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D DK53_1525 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D DK53_2499 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D DK53_518 smc; chromosome segregation protein SMC K03529 smc; chromosome segregation protein D DK53_874 scpA/B family protein K05896 scpA; segregation and condensation protein A D DK53_875 scpB; segregation and condensation protein B K06024 scpB; segregation and condensation protein B D DK53_1393 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D DK53_1918 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D DK53_1404 penicillin binding transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D DK53_1823 ftsK/SpoIIIE family protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D DK53_2679 ftsK/SpoIIIE family protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D DK53_1405 hypothetical protein K03586 ftsL; cell division protein FtsL D DK53_1394 cell division FtsQ family protein K03589 ftsQ; cell division protein FtsQ D DK53_1399 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW D DK53_1917 putative cell division protein FtsX K09811 ftsX; cell division transport system permease protein D DK53_1392 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D DK53_1670 cell division ZapA family protein K09888 zapA; cell division protein ZapA D DK53_1855 AFG1-like ATPase family protein K06916 zapE; cell division protein ZapE D DK53_906 amiB; N-acetylmuramoyl-l-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D DK53_2823 bepF; efflux pump periplasmic linker BepF K03585 acrA; membrane fusion protein, multidrug efflux system D DK53_332 bepD; efflux pump periplasmic linker BepD K03585 acrA; membrane fusion protein, multidrug efflux system D DK53_1080 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D DK53_2838 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D DK53_2837 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D DK53_2836 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D DK53_3130 repA; plasmid partitioning protein RepA K03496 parA; chromosome partitioning protein D DK53_1976 cobQ/CobB/MinD/ParA nucleotide binding domain protein K03496 parA; chromosome partitioning protein D DK53_3129 repB; plasmid partitioning protein RepB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D DK53_1975 ParB/RepB/Spo0J family partition domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D DK53_758 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D DK53_2621 parE; DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D DK53_1978 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D DK53_1977 gidB; 16S rRNA (guanine(527)-N(7))-methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D DK53_888 trmFO; m(5)U-54 methyltransferase K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] D DK53_1844 phage integrase family protein K03733 xerC; integrase/recombinase XerC D DK53_1948 xerD; tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD D DK53_72 cobQ/CobB/MinD/ParA nucleotide binding domain protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D DK53_2216 ysxC; ribosome biogenesis GTP-binding protein YsxC K03978 engB; GTP-binding protein C 03400 DNA repair and recombination proteins [BR:babu03400] D DK53_195 methylated-DNA-[]-cysteine S-methyltransferase family protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D DK53_514 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D DK53_176 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D DK53_1864 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DK53_1626 dut; dUTP diphosphatase family protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D DK53_2349 methylated-DNA-[]-cysteine S-methyltransferase family protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D DK53_403 methylated-DNA-[]-cysteine S-methyltransferase family protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D DK53_2676 alkB; alpha-ketoglutarate-dependent dioxygenase AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] D DK53_658 uracil DNA glycosylase superfamily protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D DK53_635 uracil-DNA glycosylase, 4 family protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D DK53_1599 hhH-GPD superbase excision DNA repair family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D DK53_2958 methyladenine glycosylase family protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D DK53_16 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D DK53_1922 exodeoxyribonuclease III family protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D DK53_867 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D DK53_1250 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DK53_1388 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DK53_135 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D DK53_1097 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D DK53_1472 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D DK53_704 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D DK53_1381 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D DK53_1224 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D DK53_1223 DNA-directed RNA polymerase, beta'' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D DK53_1192 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D DK53_660 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D DK53_2634 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D DK53_159 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D DK53_2927 mutL; DNA mismatch repair MutL family protein K03572 mutL; DNA mismatch repair protein MutL D DK53_2464 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D DK53_456 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DK53_824 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D DK53_20 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D DK53_695 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D DK53_1974 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D DK53_983 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D DK53_1990 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DK53_2234 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DK53_2591 exonuclease, DNA polymerase III, epsilon subunit family domain protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DK53_51 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DK53_1094 ssb4; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D DK53_1186 recA; protein RecA K03553 recA; recombination protein RecA D DK53_1651 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D DK53_1650 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D DK53_1652 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D DK53_1736 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D DK53_473 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D DK53_21 recF; DNA replication and repair RecF family protein K03629 recF; DNA replication and repair protein RecF D DK53_2632 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D DK53_673 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D DK53_49 recR; recombination protein RecR K06187 recR; recombination protein RecR D DK53_1389 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D DK53_2020 addA; double-strand break repair helicase AddA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] D DK53_2019 addB; double-strand break repair protein AddB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D DK53_579 ftsK/SpoIIIE family protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase D DK53_1088 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D DK53_137 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D DK53_2609 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D DK53_1098 hupB; DNA-binding protein HRm K03530 hupB; DNA-binding protein HU-beta D DK53_778 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D DK53_165 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D DK53_2599 hypothetical protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D DK53_1134 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D DK53_85 hypothetical protein K14160 imuA; protein ImuA D DK53_84 impB/mucB/samB family protein K14161 imuB; protein ImuB D DK53_83 dnaE; DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D DK53_2401 DEXH box helicase, DNA ligase-associated K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D DK53_2840 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D DK53_1030 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D DK53_2839 ribonucleotide reductase, small chain family protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C 03029 Mitochondrial biogenesis [BR:babu03029] D DK53_1499 hypothetical protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D DK53_2078 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D DK53_2035 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D DK53_1148 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts D DK53_1218 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D DK53_1232 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D DK53_1219 fusA; translation elongation factor G K02355 fusA; elongation factor G D DK53_774 ubiquinol-cytochrome C chaperone family protein K17662 CBP3; cytochrome b pre-mRNA-processing protein 3 D DK53_1708 hypothetical protein K17675 SUPV3L1; ATP-dependent RNA helicase SUPV3L1/SUV3 [EC:5.6.2.6] D DK53_671 era; GTP-binding protein Era K03595 era; GTPase D DK53_915 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D DK53_1739 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D DK53_756 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D DK53_871 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D DK53_590 amidase family protein K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D DK53_2619 gatA; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D DK53_894 gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D DK53_2618 gatC; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D DK53_1094 ssb4; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D DK53_1142 yaeT; outer membrane assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family D DK53_2043 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D DK53_180 grpE family protein K03687 GRPE; molecular chaperone GrpE D DK53_2949 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D DK53_2948 chaperonin 10 Kd subunit K04078 groES; chaperonin GroES D DK53_2044 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D DK53_919 aminotransferase class-V family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D DK53_833 grxD; monothiol glutaredoxin, Grx4 family K07390 grxD; monothiol glutaredoxin D DK53_72 cobQ/CobB/MinD/ParA nucleotide binding domain protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D DK53_491 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D DK53_492 ctaG; cytochrome c oxidase assembly protein CtaG K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D DK53_787 cytochrome oxidase assembly family protein K02259 COX15; heme a synthase [EC:1.17.99.9] D DK53_2217 yidC; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase D DK53_496 SURF1 family protein K14998 SURF1; surfeit locus 1 family protein D DK53_2682 SURF1 family protein K14998 SURF1; surfeit locus 1 family protein D DK53_1384 SCO1/SenC family protein K07152 SCO1; protein SCO1 B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:babu02000] D DK53_2192 ABC transporter family protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D DK53_987 ndvA; beta-(1-->2)glucan export ATP-binding/permease protein NdvA K24819 ndvA; ATP-binding cassette, subfamily B, beta-glucan exporter [EC:7.5.2.3] D DK53_467 ABC transporter family protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter D DK53_1501 ABC transporter family protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump D DK53_1502 ABC transporter family protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump D DK53_215 ABC transporter family protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D DK53_1661 ABC transporter family protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D DK53_2697 cydC; thiol reductant ABC exporter, CydC subunit K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D DK53_2698 cydD; thiol reductant ABC exporter, CydD subunit K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D DK53_1624 ABC transporter family protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D DK53_1623 ftsX-like permease family protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D DK53_1453 ABC transporter transmembrane region 2 family protein K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein D DK53_1696 ccmA; heme ABC exporter, ATP-binding protein CcmA K15738 uup; ABC transport system ATP-binding/permease protein D DK53_1307 sulfate ABC transporter, sulfate-binding family protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D DK53_120 sulfate ABC transporter, sulfate-binding family protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D DK53_1306 cysT; sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D DK53_121 cysT; sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D DK53_1305 cysW; sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D DK53_122 cysW; sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D DK53_123 cysA; sulfate ABC transporter, ATP-binding family protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D DK53_3047 modA; molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D DK53_3046 modB; molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein D DK53_3045 modC; molybdate ABC transporter, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D DK53_2868 NMT1-like family protein K15553 ssuA; sulfonate transport system substrate-binding protein D DK53_3145 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein D DK53_2867 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein D DK53_3146 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D DK53_2866 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D DK53_2522 bacterial extracellular solute-binding family protein K02012 afuA; iron(III) transport system substrate-binding protein D DK53_2501 bacterial extracellular solute-binding family protein K02012 afuA; iron(III) transport system substrate-binding protein D DK53_2523 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein D DK53_2502 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein D DK53_2521 ABC transporter family protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D DK53_2503 ABC transporter family protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D DK53_1699 thiB; thiamin/thiamine pyrophosphate ABC transporter, thiamin/thiamine pyrophospate-binding protein K02064 thiB; thiamine transport system substrate-binding protein D DK53_1700 thiP; thiamine/thiamine pyrophosphate ABC transporter, permease protein K02063 thiP; thiamine transport system permease protein D DK53_1701 thiQ; thiamine ABC transporter, ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15] D DK53_1562 bacterial extracellular solute-binding family protein K11073 potF; putrescine transport system substrate-binding protein D DK53_1558 binding--dependent transport system inner membrane component family protein K11074 potI; putrescine transport system permease protein D DK53_1560 putative spermidine/putrescine ABC transporter, permease component I protein K11075 potH; putrescine transport system permease protein D DK53_1561 polyamine ABC transporter, ATP-binding family protein K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D DK53_2832 bacterial extracellular solute-binding family protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D DK53_3023 bacterial extracellular solute-binding family protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D DK53_2418 bacterial extracellular solute-binding family protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D DK53_2829 binding--dependent transport system inner membrane component family protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D DK53_3025 binding--dependent transport system inner membrane component family protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D DK53_2421 binding--dependent transport system inner membrane component family protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D DK53_2830 binding--dependent transport system inner membrane component family protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D DK53_3024 binding--dependent transport system inner membrane component family protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D DK53_2420 binding--dependent transport system inner membrane component family protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D DK53_2831 polyamine ABC transporter, ATP-binding family protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D DK53_3026 polyamine ABC transporter, ATP-binding family protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D DK53_2419 ABC transporter family protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D DK53_2140 bacterial extracellular solute-binding family protein K11077 attC; mannopine transport system substrate-binding protein D DK53_2139 binding--dependent transport system inner membrane component family protein K11078 attB; mannopine transport system permease protein D DK53_2138 binding--dependent transport system inner membrane component family protein K11079 attA2; mannopine transport system permease protein D DK53_2137 ABC transporter family protein K11080 attA1; mannopine transport system ATP-binding protein D DK53_1530 choX; choline ABC transporter, periplasmic binding family protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D DK53_2487 substrate binding domain of ABC-type glycine betaine transport system family protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D DK53_1531 choW; choline ABC transporter, permease protein K02001 proW; glycine betaine/proline transport system permease protein D DK53_2486 binding--dependent transport system inner membrane component family protein K02001 proW; glycine betaine/proline transport system permease protein D DK53_1532 choV; choline ABC transporter, ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D DK53_2485 proV; glycine betaine/L-proline transport ATP binding subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D DK53_231 substrate binding domain of ABC-type glycine betaine transport system family protein K05845 opuC; osmoprotectant transport system substrate-binding protein D DK53_228 binding--dependent transport system inner membrane component family protein K05846 opuBD; osmoprotectant transport system permease protein D DK53_230 putative osmoprotectant uptake system permease protein yehY K05846 opuBD; osmoprotectant transport system permease protein D DK53_229 ABC transporter family protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D DK53_219 NMT1-like family protein K15598 thiY; putative hydroxymethylpyrimidine transport system substrate-binding protein D DK53_217 binding--dependent transport system inner membrane component family protein K15599 thiX; putative hydroxymethylpyrimidine transport system permease protein D DK53_2731 bacterial extracellular solute-binding s, 3 family protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D DK53_2732 ABC transporter family protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D DK53_2847 ABC transporter family protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D DK53_2686 ABC transporter family protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D DK53_246 ABC transporter family protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D DK53_2532 ABC transporter family protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D DK53_3151 ABC transporter family protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D DK53_2480 ABC transporter family protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D DK53_2690 bacterial extracellular solute-binding family protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein D DK53_2689 binding--dependent transport system inner membrane component family protein K10118 msmF; raffinose/stachyose/melibiose transport system permease protein D DK53_2688 binding--dependent transport system inner membrane component family protein K10119 msmG; raffinose/stachyose/melibiose transport system permease protein D DK53_2530 binding--dependent transport system inner membrane component family protein K17316 gtsB; glucose/mannose transport system permease protein D DK53_2531 binding--dependent transport system inner membrane component family protein K17317 gtsC; glucose/mannose transport system permease protein D DK53_2850 bacterial extracellular solute-binding family protein K10236 thuE; trehalose/maltose transport system substrate-binding protein D DK53_2849 binding--dependent transport system inner membrane component family protein K10237 thuF; trehalose/maltose transport system permease protein D DK53_2848 binding--dependent transport system inner membrane component family protein K10238 thuG; trehalose/maltose transport system permease protein D DK53_2090 xylF; D-xylose ABC transporter, D-xylose-binding protein K10543 xylF; D-xylose transport system substrate-binding protein D DK53_2886 periplasmic binding s and sugar binding domain of LacI family protein K10543 xylF; D-xylose transport system substrate-binding protein D DK53_2088 branched-chain amino acid transport system / permease component family protein K10544 xylH; D-xylose transport system permease protein D DK53_2884 branched-chain amino acid transport system / permease component family protein K10544 xylH; D-xylose transport system permease protein D DK53_2089 xylG; D-xylose ABC transporter, ATP-binding protein K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10] D DK53_2885 ABC transporter family protein K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10] D DK53_2301 sbpA; multiple sugar-binding periplasmic protein sbpA K10546 chvE; putative multiple sugar transport system substrate-binding protein D DK53_2303 branched-chain amino acid transport system / permease component family protein K10547 gguB; putative multiple sugar transport system permease protein D DK53_2302 ABC transporter family protein K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D DK53_560 periplasmic binding s and sugar binding domain of LacI family protein K10439 rbsB; ribose transport system substrate-binding protein D DK53_2245 periplasmic binding s and sugar binding domain of LacI family protein K10439 rbsB; ribose transport system substrate-binding protein D DK53_559 branched-chain amino acid transport system / permease component family protein K10440 rbsC; ribose transport system permease protein D DK53_2247 branched-chain amino acid transport system / permease component family protein K10440 rbsC; ribose transport system permease protein D DK53_2248 branched-chain amino acid transport system / permease component family protein K10440 rbsC; ribose transport system permease protein D DK53_2246 ABC transporter family protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D DK53_558 ccmA; heme ABC exporter, ATP-binding protein CcmA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D DK53_2376 periplasmic binding s and sugar binding domain of LacI family protein K17202 eryG; erythritol transport system substrate-binding protein D DK53_2375 branched-chain amino acid transport system / permease component family protein K17203 eryF; erythritol transport system permease protein D DK53_2374 ccmA; heme ABC exporter, ATP-binding protein CcmA K17204 eryE; erythritol transport system ATP-binding protein D DK53_1583 periplasmic binding s and sugar binding domain of LacI family protein K17205 xltC; putative xylitol transport system substrate-binding protein D DK53_1584 branched-chain amino acid transport system / permease component family protein K17206 xltB; putative xylitol transport system permease protein D DK53_1585 ABC transporter family protein K17207 xltA; putative xylitol transport system ATP-binding protein D DK53_2560 bacterial extracellular solute-binding family protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D DK53_2559 binding--dependent transport system inner membrane component family protein K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D DK53_2558 binding--dependent transport system inner membrane component family protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D DK53_2557 ABC transporter family protein K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D DK53_3120 basic membrane family protein K07335 bmpA; basic membrane protein A and related proteins D DK53_2647 basic membrane family protein K07335 bmpA; basic membrane protein A and related proteins D DK53_3122 branched-chain amino acid transport system / permease component family protein K23535 nupB; general nucleoside transport system permease protein D DK53_2645 branched-chain amino acid transport system / permease component family protein K23535 nupB; general nucleoside transport system permease protein D DK53_3123 branched-chain amino acid transport system / permease component family protein K23536 nupC; general nucleoside transport system permease protein D DK53_2646 branched-chain amino acid transport system / permease component family protein K23536 nupC; general nucleoside transport system permease protein D DK53_3121 ABC transporter family protein K23537 nupA; general nucleoside transport system ATP-binding protein D DK53_2644 ABC transporter family protein K23537 nupA; general nucleoside transport system ATP-binding protein D DK53_1009 mce related family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D DK53_1007 STAS domain protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D DK53_1008 ABC transporter family protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D DK53_1010 hypothetical protein K18480 linN; cholesterol transport system auxiliary component D DK53_243 extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D DK53_3154 bacterial extracellular solute-binding family protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D DK53_2478 bacterial extracellular solute-binding family protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D DK53_244 binding--dependent transport system inner membrane component family protein K02025 ABC.MS.P; multiple sugar transport system permease protein D DK53_3152 binding--dependent transport system inner membrane component family protein K02025 ABC.MS.P; multiple sugar transport system permease protein D DK53_2477 binding--dependent transport system inner membrane component family protein K02025 ABC.MS.P; multiple sugar transport system permease protein D DK53_245 binding--dependent transport system inner membrane component family protein K02026 ABC.MS.P1; multiple sugar transport system permease protein D DK53_3153 binding--dependent transport system inner membrane component family protein K02026 ABC.MS.P1; multiple sugar transport system permease protein D DK53_2476 binding--dependent transport system inner membrane component family protein K02026 ABC.MS.P1; multiple sugar transport system permease protein D DK53_1318 periplasmic binding s and sugar binding domain of LacI family protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D DK53_1316 branched-chain amino acid transport system / permease component family protein K02057 ABC.SS.P; simple sugar transport system permease protein D DK53_1315 ABC transporter family protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D DK53_2054 PBP superfamily domain protein K02040 pstS; phosphate transport system substrate-binding protein D DK53_2055 pstC; phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein D DK53_2056 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein D DK53_2057 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D DK53_2290 bacterial extracellular solute-binding s, 3 family protein K09969 aapJ; general L-amino acid transport system substrate-binding protein D DK53_746 bacterial extracellular solute-binding s, 3 family protein K09969 aapJ; general L-amino acid transport system substrate-binding protein D DK53_747 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K09970 aapQ; general L-amino acid transport system permease protein D DK53_749 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K09971 aapM; general L-amino acid transport system permease protein D DK53_750 ABC transporter family protein K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1] D DK53_1881 ABC transporter family protein K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1] D DK53_2539 bacterial extracellular solute-binding s, 3 family protein K02424 tcyA; L-cystine transport system substrate-binding protein D DK53_2538 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10009 tcyB; L-cystine transport system permease protein D DK53_2537 ABC transporter family protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1] D DK53_2780 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DK53_2788 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DK53_2285 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DK53_3106 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DK53_1718 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DK53_1720 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DK53_3141 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DK53_3161 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DK53_1273 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DK53_30 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DK53_2567 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DK53_2787 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DK53_2282 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DK53_3105 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DK53_1725 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DK53_2566 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DK53_3139 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DK53_3160 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DK53_2786 branched-chain amino acid transport system / permease component family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DK53_3159 branched-chain amino acid transport system / permease component family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DK53_2281 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D DK53_3104 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D DK53_3138 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D DK53_1724 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D DK53_2565 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D DK53_2284 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DK53_3103 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DK53_3137 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DK53_1723 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DK53_2564 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DK53_2785 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DK53_2283 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DK53_3102 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DK53_3136 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DK53_3158 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DK53_1722 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DK53_2563 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DK53_2279 lipo, YaeC family protein K02073 metQ; D-methionine transport system substrate-binding protein D DK53_7 lipo, YaeC family protein K02073 metQ; D-methionine transport system substrate-binding protein D DK53_2277 binding--dependent transport system inner membrane component family protein K02072 metI; D-methionine transport system permease protein D DK53_2278 ABC transporter family protein K02071 metN; D-methionine transport system ATP-binding protein D DK53_1971 periplasmic binding domain protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein D DK53_1972 branched-chain amino acid transport system / permease component family protein K05832 K05832; putative tryptophan/tyrosine transport system permease protein D DK53_1973 ABC transporter family protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein D DK53_335 bacterial extracellular solute-binding s, 3 family protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D DK53_941 bacterial extracellular solute-binding s, 3 family protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D DK53_858 lysine-arginine-ornithine-binding periplasmic family protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D DK53_1875 bacterial extracellular solute-binding s, 3 family protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D DK53_2584 bacterial extracellular solute-binding s, 3 family protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D DK53_2585 bacterial extracellular solute-binding s, 3 family protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D DK53_1877 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K02029 ABC.PA.P; polar amino acid transport system permease protein D DK53_1878 ABC transporter family protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D DK53_2671 bacterial extracellular solute-binding s, 5 Middle family protein K15580 oppA; oligopeptide transport system substrate-binding protein D DK53_2672 bacterial extracellular solute-binding s, 5 Middle family protein K15580 oppA; oligopeptide transport system substrate-binding protein D DK53_2673 binding--dependent transport system inner membrane component family protein K15581 oppB; oligopeptide transport system permease protein D DK53_2674 binding--dependent transport system inner membrane component family protein K15582 oppC; oligopeptide transport system permease protein D DK53_2675 nikE; nickel import ATP-binding protein NikE K10823 oppF; oligopeptide transport system ATP-binding protein D DK53_1537 bacterial extracellular solute-binding s, 5 Middle family protein K12368 dppA; dipeptide transport system substrate-binding protein D DK53_1536 binding--dependent transport system inner membrane component family protein K12369 dppB; dipeptide transport system permease protein D DK53_1535 binding--dependent transport system inner membrane component family protein K12370 dppC; dipeptide transport system permease protein D DK53_1534 ABC transporter family protein K12371 dppD; dipeptide transport system ATP-binding protein D DK53_1533 ABC transporter family protein K12372 dppF; dipeptide transport system ATP-binding protein D DK53_2424 bacterial extracellular solute-binding s, 5 Middle family protein K15584 nikA; nickel transport system substrate-binding protein D DK53_2425 bacterial extracellular solute-binding s, 5 Middle family protein K15584 nikA; nickel transport system substrate-binding protein D DK53_2426 nikB; nickel ABC transporter, permease subunit NikB K15585 nikB; nickel transport system permease protein D DK53_2427 nikC; nickel ABC transporter, permease subunit NikC K15586 nikC; nickel transport system permease protein D DK53_2428 nikD; nickel import ATP-binding protein NikD K15587 nikD; nickel transport system ATP-binding protein [EC:7.2.2.11] D DK53_2429 nikE; nickel import ATP-binding protein NikE K10824 nikE; nickel transport system ATP-binding protein [EC:7.2.2.11] D DK53_2153 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D DK53_2160 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D DK53_2771 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D DK53_2637 transmembrane protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D DK53_2441 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D DK53_2227 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D DK53_2147 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D DK53_2152 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D DK53_2163 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D DK53_2772 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D DK53_2442 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D DK53_2228 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D DK53_2146 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D DK53_2151 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D DK53_2164 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D DK53_2773 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D DK53_2443 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D DK53_2229 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D DK53_2145 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D DK53_2444 ABC transporter family protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D DK53_2144 hypothetical protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D DK53_2150 hypothetical protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D DK53_2165 hypothetical protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D DK53_2230 hypothetical protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D DK53_2775 hypothetical protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D DK53_2231 ABC transporter family protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D DK53_2776 hypothetical protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D DK53_2166 hypothetical protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D DK53_2445 ABC transporter family protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D DK53_2149 hypothetical protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D DK53_2143 hypothetical protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D DK53_27 bacterial extracellular solute-binding s, 5 Middle family protein K13893 yejA; microcin C transport system substrate-binding protein D DK53_28 bacterial extracellular solute-binding s, 5 Middle family protein K13893 yejA; microcin C transport system substrate-binding protein D DK53_26 binding--dependent transport system inner membrane component family protein K13894 yejB; microcin C transport system permease protein D DK53_25 binding--dependent transport system inner membrane component family protein K13895 yejE; microcin C transport system permease protein D DK53_24 nikE; nickel import ATP-binding protein NikE K13896 yejF; microcin C transport system ATP-binding protein D DK53_2545 periplasmic binding family protein K25282 yclQ; iron-siderophore transport system substrate-binding protein D DK53_2543 fecCD transport family protein K25283 yclO; iron-siderophore transport system permease protein D DK53_2544 fecCD transport family protein K25284 yclN; iron-siderophore transport system permease protein D DK53_2542 ABC transporter family protein K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-] D DK53_1322 periplasmic binding family protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D DK53_2471 periplasmic binding family protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D DK53_1321 fecCD transport family protein K02015 ABC.FEV.P; iron complex transport system permease protein D DK53_2472 ABC 3 transport family protein K02015 ABC.FEV.P; iron complex transport system permease protein D DK53_1319 ABC transporter family protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D DK53_2473 ABC transporter family protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D DK53_2119 periplasmic solute binding family protein K09815 znuA; zinc transport system substrate-binding protein D DK53_2117 ABC 3 transport family protein K09816 znuB; zinc transport system permease protein D DK53_2118 ABC transporter family protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D DK53_1340 cbiQ; cobalt ABC transporter, permease protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein D DK53_1338 cobalt uptake substrate-specific transmembrane region family protein K02007 cbiM; cobalt/nickel transport system permease protein D DK53_1341 ABC transporter family protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein D DK53_1337 hypothetical protein K10094 cbiK; nickel transport protein D DK53_1339 putative cobalamin biosynthesis CbiM protein K16915 cbiL; nickel transport protein D DK53_526 bioY family protein K03523 bioY; biotin transport system substrate-specific component D DK53_1665 bioY family protein K03523 bioY; biotin transport system substrate-specific component D DK53_540 ABC-2 type transporter family protein K09690 wzm; homopolymeric O-antigen transport system permease protein D DK53_539 ABC transporter family protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D DK53_693 putative permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein D DK53_692 putative permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein D DK53_169 ABC transporter family protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D DK53_2874 ABC-2 transporter family protein K19341 nosY; Cu-processing system permease protein D DK53_2875 ABC transporter family protein K19340 nosF; Cu-processing system ATP-binding protein D DK53_822 liporeleasing system, transmembrane , LolC/E family protein K09808 lolC_E; lipoprotein-releasing system permease protein D DK53_823 ABC transporter family protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D DK53_111 ccmD; heme exporter protein CcmD K02196 ccmD; heme exporter protein D D DK53_110 ccmC; heme exporter CcmC family protein K02195 ccmC; heme exporter protein C D DK53_109 ccmB; heme exporter protein CcmB K02194 ccmB; heme exporter protein B D DK53_108 ccmA; heme ABC exporter, ATP-binding protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D DK53_1917 putative cell division protein FtsX K09811 ftsX; cell division transport system permease protein D DK53_1918 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D DK53_1324 ABC-2 type transporter family protein K01992 ABC-2.P; ABC-2 type transport system permease protein D DK53_2735 ABC-2 type transporter family protein K01992 ABC-2.P; ABC-2 type transport system permease protein D DK53_2736 putative aBC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D DK53_2737 ABC transporter family protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D DK53_101 ftsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein D DK53_100 ABC transporter family protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D DK53_921 sufC; FeS assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein D DK53_1053 sodium Bile acid symporter family protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D DK53_374 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump D DK53_349 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D DK53_2953 gluP; glucose/galactose transporter WARNING family protein K02429 fucP; MFS transporter, FHS family, L-fucose permease D DK53_1419 sugar (and other) transporter family protein K03761 kgtP; MFS transporter, MHS family, alpha-ketoglutarate permease D DK53_1631 sugar (and other) transporter family protein K03762 proP; MFS transporter, MHS family, proline/betaine transporter D DK53_2926 sugar (and other) transporter family protein K08196 mucK; MFS transporter, AAHS family, cis,cis-muconate transporter D DK53_576 putative membrane protein K03449 MFS.CP; MFS transporter, CP family, cyanate transporter D DK53_2853 narK; nitrite transporter family protein K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D DK53_831 drug resistance transporter, Bcr/CflA subfamily protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D DK53_1370 drug resistance transporter, Bcr/CflA subfamily protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D DK53_2452 sugar (and other) transporter family protein K08161 mdtG; MFS transporter, DHA1 family, multidrug resistance protein D DK53_3022 drug resistance MFS transporter, drug:H+ antiporter-2 family protein K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D DK53_2223 sugar (and other) transporter family protein K08169 yebQ; MFS transporter, DHA2 family, multidrug resistance protein D DK53_665 fsr; fosmidomycin resistance protein K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein D DK53_1749 major Facilitator Superfamily protein K06902 UMF1; MFS transporter, UMF1 family D DK53_1684 major Facilitator Superfamily protein K08219 UMF2; MFS transporter, UMF2 family, putative MFS family transporter protein D DK53_2677 sugar (and other) transporter family protein K08369 ydjE; MFS transporter, putative metabolite:H+ symporter D DK53_1800 ptsP; phosphoenolpyruvate-protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] D DK53_2014 phosphocarrier, HPr family protein K02784 ptsH; phosphocarrier protein HPr D DK53_2013 PTS system fructose IIA component family protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D DK53_172 ptsN; PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D DK53_1920 aqpZ2; aquaporin Z 2 K06188 aqpZ; aquaporin Z D DK53_1824 amt; ammonium transporter family protein K03320 amt; ammonium transporter, Amt family D DK53_707 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D DK53_2198 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D DK53_1456 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D DK53_2239 gst; glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D DK53_356 mscL; large conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel D DK53_1299 mechanosensitive ion channel family protein K05802 mscK; potassium-dependent mechanosensitive channel D DK53_1028 mechanosensitive ion channel family protein K16053 ybdG; miniconductance mechanosensitive channel D DK53_2360 mgtE; magnesium transporter K06213 mgtE; magnesium transporter D DK53_1336 yut; urea transporter K08717 utp; urea transporter D DK53_3008 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA D DK53_2096 membrane MotB of proton-channel complex MotA/MotB family protein K02557 motB; chemotaxis protein MotB D DK53_1660 ompA family protein K02557 motB; chemotaxis protein MotB D DK53_1619 exbB; tonB-system energizer ExbB K03561 exbB; biopolymer transport protein ExbB D DK53_1620 exbD; TonB system transport protein ExbD K03559 exbD; biopolymer transport protein ExbD D DK53_1648 tolQ; protein TolQ K03562 tolQ; biopolymer transport protein TolQ D DK53_1647 tolR; protein TolR K03560 tolR; biopolymer transport protein TolR D DK53_574 corA-like Mg2+ transporter family protein K03284 corA; magnesium transporter D DK53_2408 crcB-like family protein K06199 crcB; fluoride exporter D DK53_2409 crcB-like family protein K06199 crcB; fluoride exporter D DK53_1343 crcB-like family protein K06199 crcB; fluoride exporter D DK53_1944 transporter associated domain protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D DK53_706 opacity porin family protein K16079 omp31; outer membrane immunogenic protein D DK53_964 outer membrane autotransporter barrel domain protein K16079 omp31; outer membrane immunogenic protein D DK53_1574 hypothetical protein K16079 omp31; outer membrane immunogenic protein D DK53_1263 hypothetical protein K16079 omp31; outer membrane immunogenic protein D DK53_131 outer membrane autotransporter barrel domain protein K16079 omp31; outer membrane immunogenic protein D DK53_132 outer membrane autotransporter barrel domain protein K16079 omp31; outer membrane immunogenic protein D DK53_937 outer membrane beta-barrel domain protein K06076 fadL; long-chain fatty acid transport protein D DK53_1932 outer membrane autotransporter barrel domain protein K12678 aidA-I; autotransporter family porin D DK53_2092 outer membrane autotransporter barrel domain protein K19231 bmaC; fibronectin-binding autotransporter adhesin D DK53_1323 tonB dependent receptor family protein K16092 btuB; vitamin B12 transporter D DK53_3143 bhuA; heme transporter BhuA K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D DK53_2242 TonB-dependent copper receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D DK53_933 bepC; outer membrane efflux protein BepC K12340 tolC; outer membrane protein D DK53_2763 polysaccharide biosynthesis/export family protein K01991 wza; polysaccharide biosynthesis/export protein D DK53_784 polysaccharide biosynthesis/export family protein K01991 wza; polysaccharide biosynthesis/export protein D DK53_1142 yaeT; outer membrane assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family D DK53_1390 yfiO; outer membrane assembly lipoYfiO family protein K05807 bamD; outer membrane protein assembly factor BamD D DK53_64 surface antigen variable number repeat family protein K07278 tamA; translocation and assembly module TamA D DK53_65 hypothetical protein K09800 tamB; translocation and assembly module TamB D DK53_86 coiled stalk of trimeric autotransporter adhesin family protein K19232 btaE; hyaluronate-binding autotransporter adhesin D DK53_1775 hypothetical protein K19233 btaF; ECM component-binding autotransporter adhesin D DK53_168 ostA-like family protein K09774 lptA; lipopolysaccharide export system protein LptA D DK53_167 lipopolysaccharide-assembly, LptC-related family protein K11719 lptC; lipopolysaccharide export system protein LptC D DK53_691 organic solvent tolerance family protein K04744 lptD; LPS-assembly protein D DK53_1738 lipopolysaccharide-assembly family protein K03643 lptE; LPS-assembly lipoprotein D DK53_2070 transporter associated domain protein K06189 corC; hemolysin (HlyC) family protein D DK53_363 lrgA family protein K06518 cidA; holin-like protein D DK53_3078 cycA; D-serine/D-alanine/glycine transporter K11737 cycA; D-serine/D-alanine/glycine transporter D DK53_2819 amino acid permease family protein K20265 gadC; glutamate:GABA antiporter D DK53_519 cation diffusion facilitator transporter family protein K16264 czcD; cobalt-zinc-cadmium efflux system protein D DK53_333 bepE; efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump D DK53_1079 acrB/AcrD/AcrF family protein K18138 acrB; multidrug efflux pump D DK53_2323 acrB/AcrD/AcrF family protein K21134 triC; multidrug efflux pump D DK53_916 small Multidrug Resistance family protein K03297 emrE; small multidrug resistance pump D DK53_780 sugE; quaternary ammonium compound-resistance protein sugE K11741 sugE; quaternary ammonium compound-resistance protein SugE D DK53_1282 eamA-like transporter family protein K08978 TC.BAT1; bacterial/archaeal transporter family protein D DK53_686 eamA-like transporter family protein K05786 rarD; chloramphenicol-sensitive protein RarD D DK53_722 transporter, lactate permease family protein K03303 lutP; lactate permease D DK53_2935 transporter, monovalent cation:proton antiporter-2 family protein K11747 kefB; glutathione-regulated potassium-efflux system protein KefB D DK53_1302 trkA-N domain protein K26735 KEA4_5_6; K+:H+ antiporter D DK53_1462 cation transport family protein K03498 trkH; trk/ktr system potassium uptake protein D DK53_1105 trkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein D DK53_2554 permease family protein K06901 pbuG; adenine/guanine/hypoxanthine permease D DK53_2032 benzoate membrane transport family protein K05782 benE; benzoate membrane transport protein D DK53_511 voltage gated chloride channel family protein K03281 clcA; chloride channel protein, CIC family D DK53_2810 voltage gated chloride channel family protein K03281 clcA; chloride channel protein, CIC family D DK53_1407 metal ion transporter, metal ion family protein K03322 mntH; manganese transport protein D DK53_1446 na+/Pi-cotransporter family protein K03324 yjbB; phosphate:Na+ symporter D DK53_2705 cpa3; monovalent cation:proton antiporter family protein K05559 phaA; multicomponent K+:H+ antiporter subunit A D DK53_2704 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L family protein K05560 phaC; multicomponent K+:H+ antiporter subunit C D DK53_2703 NADH-Ubiquinone/plastoquinone (complex I), various chains family protein K05561 phaD; multicomponent K+:H+ antiporter subunit D D DK53_2702 na+/H+ ion antiporter subunit K05562 phaE; multicomponent K+:H+ antiporter subunit E D DK53_2701 multiple resistance and pH regulation F family protein K05563 phaF; multicomponent K+:H+ antiporter subunit F D DK53_2700 monovalent cation/proton antiporter, MnhG/PhaG subunit K05564 phaG; multicomponent K+:H+ antiporter subunit G D DK53_155 mviN; integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D DK53_1415 membrane transport family protein K13936 mdcF; malonate transporter and related proteins D DK53_1354 kup; potassium uptake protein K03549 kup; KUP system potassium uptake protein D DK53_683 lysE type translocator family protein K06895 lysE; L-lysine exporter family protein LysE/ArgO D DK53_1848 lysE type translocator family protein K05834 rhtB; homoserine/homoserine lactone efflux protein D DK53_2454 azlC family protein K26605 azlC; branched chain amino acid efflux pump D DK53_1783 azlC family protein K26605 azlC; branched chain amino acid efflux pump D DK53_2453 branched-chain amino acid transport family protein K26606 azlD; branched chain amino acid efflux pump D DK53_1933 hypothetical protein K09125 yhhQ; queuosine precursor transporter D DK53_1630 rubrerythrin family protein K22737 mbfA; erythrin-vacuolar iron transport family protein D DK53_1089 marC integral membrane family protein K05595 marC; multiple antibiotic resistance protein D DK53_1399 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW D DK53_2797 iron permease FTR1 family protein K07243 FTR; high-affinity iron transporter D DK53_2799 fe2+ transport family protein K07230 p19; periplasmic iron binding protein D DK53_3041 high-affinity nickel-transport family protein K08970 rcnA; nickel/cobalt transporter (NicO) family protein D DK53_1621 hypothetical protein K03832 tonB; periplasmic protein TonB D DK53_1644 pal; peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein D DK53_1645 tolB; Tol-Pal system beta propeller repeat protein TolB K03641 tolB; TolB protein D DK53_772 V-type H(+)-translocating pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1] D DK53_2629 cytochrome C biogenesis transmembrane region family protein K06196 ccdA; cytochrome c-type biogenesis protein D DK53_2854 nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D DK53_2855 narH; nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D DK53_2857 narI; respiratory nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D DK53_3020 hlyD secretion family protein K03543 emrA; membrane fusion protein, multidrug efflux system D DK53_1047 hlyD secretion family protein K03543 emrA; membrane fusion protein, multidrug efflux system D DK53_2823 bepF; efflux pump periplasmic linker BepF K03585 acrA; membrane fusion protein, multidrug efflux system D DK53_332 bepD; efflux pump periplasmic linker BepD K03585 acrA; membrane fusion protein, multidrug efflux system D DK53_1080 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D DK53_2321 efflux transporter, RND family, MFP subunit K21136 triA; membrane fusion protein, multidrug efflux system D DK53_2322 efflux transporter, RND family, MFP subunit K21137 triB; membrane fusion protein, multidrug efflux system D DK53_1625 efflux transporter, RND family, MFP subunit K13888 macA; membrane fusion protein, macrolide-specific efflux system D DK53_2764 chain length determinant family protein K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3] D DK53_407 sbmA; protein sbmA K17938 sbmA; peptide/bleomycin uptake transporter D DK53_624 ccmF; cytochrome c-type biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF D DK53_3091 mgtC family protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D DK53_528 uraH; hydroxyisourate hydrolase K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17] C 02044 Secretion system [BR:babu02044] D DK53_933 bepC; outer membrane efflux protein BepC K12340 tolC; outer membrane protein D DK53_1913 YGGT family protein K02221 yggT; YggT family protein D DK53_2109 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D DK53_3016 flhB HrpN YscU SpaS family protein K02401 flhB; flagellar biosynthesis protein FlhB D DK53_2094 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D DK53_3005 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D DK53_3013 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D DK53_2979 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D DK53_2107 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D DK53_2110 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D DK53_3065 transglycosylase SLT domain protein K03194 virB1; type IV secretion system protein VirB1 D DK53_3066 trbC/VIRB2 family protein K03197 virB2; type IV secretion system protein VirB2 D DK53_3067 type IV secretory pathway, VirB3-like family protein K03198 virB3; type IV secretion system protein VirB3 D DK53_3068 ptlC; type IV secretion system protein ptlC K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8] D DK53_3069 virB5; P-type DNA transfer protein VirB5 K03200 virB5; type IV secretion system protein VirB5 D DK53_3070 trbL/VirB6 plasmid conjugal transfer family protein K03201 virB6; type IV secretion system protein VirB6 D DK53_3071 putative traI protein K03202 virB7; type IV secretion system protein VirB7 D DK53_3072 virB8; type IV secretion system protein virB8 K03203 virB8; type IV secretion system protein VirB8 D DK53_3073 virB9; P-type conjugative transfer protein VirB9 K03204 virB9; type IV secretion system protein VirB9 D DK53_3074 bacterial conjugation TrbI-like family protein K03195 virB10; type IV secretion system protein VirB10 D DK53_3075 virB11; P-type DNA transfer ATPase VirB11 K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8] D DK53_1932 outer membrane autotransporter barrel domain protein K12678 aidA-I; autotransporter family porin D DK53_1868 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D DK53_1991 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D DK53_1301 secD; export membrane protein SecD K12257 secDF; SecD/SecF fusion protein D DK53_885 secD; export membrane protein SecD K12257 secDF; SecD/SecF fusion protein D DK53_1230 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D DK53_1126 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D DK53_1196 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D DK53_1756 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D DK53_1859 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D DK53_884 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D DK53_2217 yidC; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase D DK53_876 tatA; twin arginine-targeting translocase, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA D DK53_877 tatB; twin arginine-targeting protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB D DK53_878 tatC; twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:babu02042] D DK53_1944 transporter associated domain protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D DK53_82 hemolysin-III related family protein K11068 hlyIII; hemolysin III C 02022 Two-component system [BR:babu02022] D DK53_338 his Kinase A domain protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D DK53_2059 phoB; phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D DK53_1480 HAMP domain protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D DK53_1479 hypothetical protein K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D DK53_2011 HAMP domain protein K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3] D DK53_2010 response regulator K14981 chvI; two-component system, OmpR family, response regulator ChvI D DK53_2100 ftcR; flagellar transcriptional regulator ftcR K21603 ftcR; two-component system, OmpR family, flagellar system response regulator FtcR D DK53_2918 HAMP domain protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D DK53_2917 hypothetical protein K02483 K02483; two-component system, OmpR family, response regulator D DK53_627 response regulator K02483 K02483; two-component system, OmpR family, response regulator D DK53_2726 response regulator K02483 K02483; two-component system, OmpR family, response regulator D DK53_619 response regulator K02483 K02483; two-component system, OmpR family, response regulator D DK53_377 bacterial regulatory s, luxR family protein K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL D DK53_376 histidine kinase family protein K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3] D DK53_1109 his Kinase A domain protein K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D DK53_1108 ntrC; nitrogen regulation protein NR K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D DK53_1107 sensory box protein K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D DK53_1106 bacterial regulatory , Fis family protein K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX D DK53_631 sensory box protein K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3] D DK53_593 his Kinase A domain protein K11357 divJ; two-component system, cell cycle sensor histidine kinase DivJ [EC:2.7.13.3] D DK53_2603 pleD; response regulator K02488 pleD; two-component system, cell cycle response regulator [EC:2.7.7.65] D DK53_2602 divK; response regulator K11443 divK; two-component system, cell cycle response regulator DivK D DK53_1026 sensory box protein K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3] D DK53_1549 ctrA; response regulator K13584 ctrA; two-component system, cell cycle response regulator CtrA D DK53_3087 response regulator K13589 cpdR; two-component system, cell cycle response regulator CpdR D DK53_146 regB; sensor histidine kinase regB K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D DK53_149 regA; photosynthetic apparatus regulatory protein regA K15012 regA; two-component system, response regulator RegA C 02035 Bacterial motility proteins [BR:babu02035] D DK53_3005 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D DK53_2979 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D DK53_2107 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D DK53_2110 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D DK53_2109 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D DK53_3016 flhB HrpN YscU SpaS family protein K02401 flhB; flagellar biosynthesis protein FlhB D DK53_3009 putative surface presentation of antigens (SPOA) protein K02416 fliM; flagellar motor switch protein FliM D DK53_3013 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D DK53_2094 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D DK53_2983 flagellar P-ring family protein K02394 flgI; flagellar P-ring protein FlgI D DK53_2984 flgA; flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D DK53_2981 flagellar L-ring family protein K02393 flgH; flagellar L-ring protein FlgH D DK53_2980 flagellar basal body-associated FliL family protein K02415 fliL; flagellar protein FliL D DK53_2986 flagellar hook-basal body complex FliE family protein K02408 fliE; flagellar hook-basal body complex protein FliE D DK53_2988 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D DK53_2987 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D DK53_2106 hypothetical protein K02389 flgD; flagellar basal-body rod modification protein FlgD D DK53_3006 flgF; flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D DK53_2985 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D DK53_2112 rod binding family protein K02395 flgJ; peptidoglycan hydrolase FlgJ D DK53_2101 flgE; flagellar hook protein flgE K02390 flgE; flagellar hook protein FlgE D DK53_2102 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D DK53_2103 hypothetical protein K02397 flgL; flagellar hook-associated protein 3 FlgL D DK53_2093 fliC; flagellin K02406 fliC; flagellin D DK53_3008 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA D DK53_2096 membrane MotB of proton-channel complex MotA/MotB family protein K02557 motB; chemotaxis protein MotB D DK53_1660 ompA family protein K02557 motB; chemotaxis protein MotB D DK53_2097 putative chemotaxis protein K10564 motC; chemotaxis protein MotC D DK53_2098 flagellar hook-length control FliK family protein K10565 motD; chemotaxis protein MotD D DK53_2539 bacterial extracellular solute-binding s, 3 family protein K02424 tcyA; L-cystine transport system substrate-binding protein D DK53_2104 flagellar FlaF family protein K06602 flaF; flagellar biosynthesis activator protein FlaF D DK53_2105 flagellar FlbT family protein K06601 flbT; flagellar biosynthesis repressor protein FlbT C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:babu04812] D DK53_1392 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D DK53_1393 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D DK53_2838 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D DK53_2837 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D DK53_2836 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D DK53_3130 repA; plasmid partitioning protein RepA K03496 parA; chromosome partitioning protein D DK53_1976 cobQ/CobB/MinD/ParA nucleotide binding domain protein K03496 parA; chromosome partitioning protein D DK53_3129 repB; plasmid partitioning protein RepB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D DK53_1975 ParB/RepB/Spo0J family partition domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:babu04147] D DK53_1122 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D DK53_1673 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D DK53_1674 phosphoglycerate kinase family protein K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D DK53_1692 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D DK53_2561 dipeptidase AC, Metallo peptidase, MEROPS family M19 K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D DK53_2949 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D DK53_2043 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D DK53_326 phosphoglucose isomerase family protein K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D DK53_2809 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D DK53_1218 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D DK53_1232 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D DK53_1155 hit-like protein involved in cell-cycle regulation K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D DK53_1053 sodium Bile acid symporter family protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D DK53_330 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D DK53_2752 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DK53_1709 phbA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DK53_2433 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DK53_2015 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D DK53_1195 adenylate kinase family protein K00939 adk; adenylate kinase [EC:2.7.4.3] D DK53_728 AAA domain protein K00939 adk; adenylate kinase [EC:2.7.4.3] D DK53_1496 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D DK53_1902 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D DK53_88 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D DK53_319 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D DK53_2364 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D DK53_2460 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DK53_2491 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DK53_992 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DK53_761 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D DK53_95 putative pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D DK53_1184 phoA; alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D DK53_1635 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D DK53_2747 ACT domain protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D DK53_1748 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D DK53_1116 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DK53_1846 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DK53_2681 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DK53_1891 electron transfer flavodomain protein K03522 fixB; electron transfer flavoprotein alpha subunit D DK53_2450 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D DK53_1127 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D DK53_2190 gpm1; phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] C 02048 Prokaryotic defense system [BR:babu02048] D DK53_2386 hsdR; type I site-specific deoxyribonuclease, HsdR family protein K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D DK53_2387 type I restriction modification DNA specificity domain protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D DK53_2388 hsdM; type I restriction-modification system, M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D DK53_512 DNA methylase family protein K13581 ccrM; modification methylase [EC:2.1.1.72] D DK53_571 death-on-curing family protein K07341 doc; death on curing protein D DK53_1392 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D DK53_758 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D DK53_2621 parE; DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D DK53_1135 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D DK53_1004 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D DK53_2633 flavinator of succinate dehydrogenase family protein K09159 cptB; antitoxin CptB D DK53_919 aminotransferase class-V family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes [BR:babu01504] D DK53_2635 fosX; fosfomycin resistance protein fosX K21252 fosX; fosfomycin resistance protein FosX D DK53_2628 hypothetical protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] D DK53_2823 bepF; efflux pump periplasmic linker BepF K03585 acrA; membrane fusion protein, multidrug efflux system D DK53_332 bepD; efflux pump periplasmic linker BepD K03585 acrA; membrane fusion protein, multidrug efflux system D DK53_1080 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D DK53_333 bepE; efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump D DK53_1079 acrB/AcrD/AcrF family protein K18138 acrB; multidrug efflux pump D DK53_226 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D DK53_933 bepC; outer membrane efflux protein BepC K12340 tolC; outer membrane protein C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:babu00537] D DK53_1184 phoA; alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D DK53_2561 dipeptidase AC, Metallo peptidase, MEROPS family M19 K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:babu03100] D DK53_1791 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D DK53_2125 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D DK53_1591 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D DK53_41 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D DK53_1912 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D DK53_725 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D DK53_314 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D DK53_951 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D DK53_1956 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D DK53_2590 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D DK53_2834 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D DK53_801 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D DK53_2597 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D DK53_532 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D DK53_1568 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D DK53_1606 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D DK53_1257 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D DK53_1258 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D DK53_1233 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D DK53_953 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D DK53_2342 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D DK53_2222 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D DK53_1555 tRNA-His K14226 tRNA-His; tRNA His D DK53_1592 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D DK53_2124 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D DK53_1792 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D DK53_892 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D DK53_1036 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D DK53_1873 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D DK53_2189 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D DK53_1073 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D DK53_1066 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D DK53_1311 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D DK53_2626 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D DK53_1439 tRNA-Met K14230 tRNA-Met; tRNA Met D DK53_1553 tRNA-Met K14230 tRNA-Met; tRNA Met D DK53_1588 tRNA-Met K14230 tRNA-Met; tRNA Met D DK53_2128 tRNA-Met K14230 tRNA-Met; tRNA Met D DK53_1788 tRNA-Met K14230 tRNA-Met; tRNA Met D DK53_289 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D DK53_723 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D DK53_781 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D DK53_204 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D DK53_651 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D DK53_1780 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D DK53_2654 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D DK53_2171 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D DK53_299 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D DK53_926 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D DK53_2397 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D DK53_1231 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D DK53_1234 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D DK53_3088 tRNA-Val K14237 tRNA-Val; tRNA Val D DK53_800 tRNA-Val K14237 tRNA-Val; tRNA Val D DK53_950 tRNA-Val K14237 tRNA-Val; tRNA Val D DK53_2123 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D DK53_1793 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D DK53_1593 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D DK53_2126 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D DK53_1790 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D DK53_1590 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D DK53_2127 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D DK53_1789 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D DK53_1589 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D DK53_1967 afr; 1,5-anhydro-D-fructose reductase K19181 afr; 1,5-anhydro-D-fructose reductase (1,5-anhydro-D-mannitol-forming) [EC:1.1.1.292] D DK53_2960 aldo/keto reductase family protein K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346] D DK53_2371 FAD dependent oxidoreductase family protein K21054 eryB; D-erythritol 1-phosphate dehydrogenase [EC:1.1.1.402] D DK53_2994 3-beta hydroxysteroid dehydrogenase/isomerase family protein K22025 denD; D-erythronate 2-dehydrogenase [EC:1.1.1.410] D DK53_2184 acyl-CoA reductase family protein K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68] D DK53_636 pyridine nucleotide-disulfide oxidoreductase family protein K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] D DK53_2642 zinc-binding dehydrogenase family protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D DK53_2789 NAD(P)H quinone oxidoreductase, PIG3 family protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D DK53_2808 cytochrome c family protein K19713 tsdA; thiosulfate dehydrogenase [EC:1.8.2.2] D DK53_2173 msrA; peptide-methionine (S)-S-oxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D DK53_2754 msrB; methionine-R-sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D DK53_641 hypothetical protein K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D DK53_1518 hypothetical protein K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7] D DK53_2251 oxidoreductase molybdopterin binding domain protein K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-] D DK53_913 redoxin family protein K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D DK53_2353 peroxiredoxin, Ohr subfamily protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D DK53_2514 ahpD; alkylhydroperoxidase, AhpD family protein K04756 ahpD; lipoyl-dependent peroxiredoxin subunit D [EC:1.11.1.28] D DK53_2513 redoxin family protein K24126 ahpC; lipoyl-dependent peroxiredoxin subunit C [EC:1.11.1.28] D DK53_1509 aspartyl/Asparaginyl beta-hydroxylase family protein K22616 olsC; ornithine lipid ester-linked acyl 2-hydroxylase [EC:1.14.11.58] D DK53_2517 cueO; blue copper oxidase CueO K14588 cueO; cuproxidase [EC:1.16.3.4] D DK53_368 fpr; ferredoxin--NADP reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D DK53_979 arsC; arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D DK53_881 L-isoaspartate family protein K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D DK53_932 L-isoaspartate family protein K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D DK53_475 methyltransferase domain protein K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D DK53_1420 tam; trans-aconitate 2-methyltransferase K00598 tam; trans-aconitate 2-methyltransferase [EC:2.1.1.144] D DK53_2071 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D DK53_2066 acyltransferase family protein K22617 olsA; lyso-ornithine lipid O-acyltransferase [EC:2.3.1.270] D DK53_1507 acetyltransferase domain protein K03824 yhbS; putative acetyltransferase [EC:2.3.1.-] D DK53_1602 acetyltransferase domain protein K24217 mnaT; L-amino acid N-acyltransferase [EC:2.3.1.-] D DK53_898 aat; leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6] D DK53_759 hypothetical protein K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29] D DK53_160 acetyltransferase domain protein K22310 olsB; L-ornithine Nalpha-acyltransferase [EC:2.3.2.30] D DK53_1484 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D DK53_2872 apbE family protein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D DK53_2912 apbE family protein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D DK53_2372 hypothetical protein K00862 eryA; erythritol kinase (D-erythritol 1-phosphate-forming) [EC:2.7.1.215] D DK53_2991 hypothetical protein K21948 otnK; 3-dehydrotetronate 4-kinase [EC:2.7.1.217] D DK53_1986 kinase/pyrophosphorylase family protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D DK53_629 glutamate-ammonia ligase adenylyltransferase family protein K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89] D DK53_1649 hypothetical protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D DK53_1022 histidine phosphatase super family protein K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-] D DK53_2815 EAL domain protein K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52] D DK53_3149 type I phosphodiesterase / nucleotide pyrophosphatase family protein K01133 betC; choline-sulfatase [EC:3.1.6.6] D DK53_985 hydrolase, TatD family protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D DK53_2595 denV; endonuclease V K01161 E3.1.25.1; deoxyribonuclease (pyrimidine dimer) [EC:3.1.25.1] D DK53_1953 D-alanyl-D-alanine carboxypeptidase family protein K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4] D DK53_1158 D-alanyl-D-alanine carboxypeptidase family protein K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4] D DK53_1060 D-alanyl-D-alanine carboxypeptidase family protein K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4] D DK53_1410 N-acetylmuramoyl-L-alanine amidase family protein K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D DK53_2746 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D DK53_2205 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D DK53_1805 carbon-nitrogen hydrolase family protein K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128] D DK53_2475 rutC family protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D DK53_1513 AAA domain family protein K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D DK53_843 serine hydrolase family protein K07002 RBBP9; serine hydrolase [EC:3.-.-.-] D DK53_1304 serine hydrolase family protein K07002 RBBP9; serine hydrolase [EC:3.-.-.-] D DK53_2995 hypothetical protein K22130 otnC; 3-dehydro-4-phosphotetronate decarboxylase [EC:4.1.1.104] D DK53_2422 hypothetical protein K26399 K26399; arabinonate dehydratase [EC:4.2.1.5] D DK53_994 yjeF-related family protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D DK53_2768 mutarotase, YjhT family protein K17948 nanM; N-acetylneuraminate epimerase [EC:5.1.3.24] D DK53_1313 rbsD / FucU transport family protein K02431 fucU; L-fucose mutarotase [EC:5.1.3.29] D DK53_248 hypothetical protein K03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32] D DK53_2370 putative d-erythrulose 4-phosphate dehydrogenase K21909 eryC; D-erythrulose 1-phosphate 3-epimerase [EC:5.1.3.38] D DK53_1085 cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD family protein K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8] D DK53_2367 triosephosphate isomerase family protein K21910 eryH; L-erythrulose 1-phosphate isomerase [EC:5.3.1.33] D DK53_2366 sugar-phosphate isomerase, RpiB/LacA/LacB family protein K21911 eryI; D-erythrulose 4-phosphate isomerase [EC:5.3.1.34] D DK53_2992 xylose isomerase-like TIM barrel family protein K22131 otnI; 2-dehydrotetronate isomerase [EC:5.3.1.35] D DK53_392 copper-translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9] D DK53_1937 copper-translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] D DK53_3094 mgtA; magnesium-translocating P-type ATPase K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14] C 99981 Carbohydrate metabolism D DK53_1260 sfsA; sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A D DK53_2048 calcium-binding protein, regucalcin K22217 K22217; sugar lactone lactonase C 99982 Energy metabolism D DK53_2526 formate dehydrogenase family accessory protein FdhD K02379 fdhD; FdhD protein D DK53_1706 4Fe-4S binding domain protein K05524 fdxA; ferredoxin D DK53_2898 von Willebrand factor type A domain protein K02448 norD; nitric oxide reductase NorD protein D DK53_2903 cytochrome c oxidase subunit III family protein K02164 norE; nitric oxide reductase NorE protein D DK53_2902 prokaryotic Cytochrome C oxidase subunit IV family protein K04747 norF; nitric oxide reductase NorF protein D DK53_2899 AAA domain family protein K04748 norQ; nitric oxide reductase NorQ protein D DK53_1892 electron transfer flavodomain protein K03521 fixA; electron transfer flavoprotein beta subunit C 99983 Lipid metabolism D DK53_2616 hypothetical protein K09456 aidB; putative acyl-CoA dehydrogenase C 99984 Nucleotide metabolism D DK53_2841 nrdI; nrdI protein K03647 nrdI; protein involved in ribonucleotide reduction C 99985 Amino acid metabolism D DK53_177 etoposide-induced 2.4 family protein K06203 cysZ; CysZ protein D DK53_1740 hypothetical protein K06997 yggS; PLP dependent protein C 99986 Glycan metabolism D DK53_1303 hypothetical protein K07027 K07027; glycosyltransferase 2 family protein D DK53_1554 glycosyltransferase 25 family protein K07270 K07270; glycosyl transferase, family 25 C 99987 Cofactor metabolism D DK53_1286 cobW; cobalamin biosynthesis protein CobW K02234 cobW; cobalamin biosynthesis protein CobW D DK53_1812 tetratricopeptide repeat family protein K02498 hemY; HemY protein D DK53_2178 ubiB; 2-polyprenylphenol 6-hydroxylase K03688 ubiB; ubiquinone biosynthesis protein D DK53_2863 SCP-2 sterol transfer family protein K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT D DK53_942 mobB; molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein D DK53_1113 polyketide cyclase / dehydrase and lipid transport family protein K18588 COQ10; coenzyme Q-binding protein COQ10 C 99988 Secondary metabolism C 99999 Others D DK53_2952 yqjF; inner membrane protein yqjF K15977 K15977; putative oxidoreductase D DK53_2252 hypothetical protein K06999 K06999; phospholipase/carboxylesterase B B 09192 Unclassified: genetic information processing C 99973 Transcription D DK53_448 'Cold-shock' DNA-binding domain protein K03704 cspA; cold shock protein D DK53_1455 'Cold-shock' DNA-binding domain protein K03704 cspA; cold shock protein D DK53_1246 'Cold-shock' DNA-binding domain protein K03704 cspA; cold shock protein D DK53_2333 S1 RNA binding domain protein K06959 tex; protein Tex C 99974 Translation D DK53_1326 ccmA; heme ABC exporter, ATP-binding protein CcmA K13926 rbbA; ribosome-dependent ATPase D DK53_1325 ABC-2 type transporter family protein K13926 rbbA; ribosome-dependent ATPase C 99975 Protein processing D DK53_1157 clpS; ATP-dependent Clp protease adapter protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS D DK53_893 tig; trigger factor K03545 tig; trigger factor D DK53_2250 ferric reductase like transmembrane component family protein K17247 msrQ; methionine sulfoxide reductase heme-binding subunit D DK53_311 ureE1; urease accessory protein ureE 1 K03187 ureE; urease accessory protein D DK53_312 ureF family protein K03188 ureF; urease accessory protein D DK53_1333 ureF family protein K03188 ureF; urease accessory protein D DK53_313 ureG; urease accessory protein UreG K03189 ureG; urease accessory protein D DK53_1334 ureG; urease accessory protein UreG K03189 ureG; urease accessory protein D DK53_306 ureD urease accessory family protein K03190 ureD; urease accessory protein D DK53_1335 ureD urease accessory family protein K03190 ureD; urease accessory protein D DK53_657 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein D DK53_2842 nrdH; glutaredoxin-like NrdH family protein K06191 nrdH; glutaredoxin-like protein NrdH D DK53_2050 sigma-54 interaction domain protein K07391 comM; magnesium chelatase family protein D DK53_2203 hypothetical protein K07401 K07401; selenoprotein W-related protein D DK53_386 xdhC; xanthine dehydrogenase accessory protein XdhC K07402 xdhC; xanthine dehydrogenase accessory factor C 99976 Replication and repair D DK53_1262 DNA repair RadC family protein K03630 radC; DNA repair protein RadC D DK53_2204 rmuC family protein K09760 rmuC; DNA recombination protein RmuC D DK53_188 hypothetical protein K07460 yraN; putative endonuclease D DK53_2202 GIY-YIG catalytic domain protein K07461 K07461; putative endonuclease D DK53_2611 dprA; DNA protecting protein DprA K04096 smf; DNA processing protein D DK53_1189 sigma-54 interaction domain protein K07478 ycaJ; putative ATPase D DK53_552 transposase family protein K07483 K07483; transposase D DK53_2656 transposase family protein K07483 K07483; transposase D DK53_2657 putative transposase K07484 K07484; transposase D DK53_2658 transposase IS66 family protein K07484 K07484; transposase D DK53_533 transposase DDE domain protein K07492 K07492; putative transposase D DK53_550 hypothetical protein K07492 K07492; putative transposase D DK53_546 hypothetical protein K07492 K07492; putative transposase D DK53_909 hypothetical protein K07492 K07492; putative transposase D DK53_548 transposase DDE domain protein K07492 K07492; putative transposase D DK53_2170 integrase core domain protein K07497 K07497; putative transposase D DK53_732 integrase core domain protein K07497 K07497; putative transposase D DK53_2129 integrase core domain protein K07497 K07497; putative transposase D DK53_2997 transposase family protein K07497 K07497; putative transposase D DK53_535 putative transposase K07497 K07497; putative transposase D DK53_536 integrase core domain protein K07497 K07497; putative transposase D DK53_1781 transposase IS66 family protein K07498 K07498; putative transposase C 99979 Viral proteins C 99998 Others D DK53_50 DNA-binding protein, YbaB/EbfC family K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D DK53_318 acrB/AcrD/AcrF family protein K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family D DK53_2718 agcS; amino acid carrier family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D DK53_1637 sodium Bile acid symporter family protein K03453 TC.BASS; bile acid:Na+ symporter, BASS family C 99978 Cell growth D DK53_1860 ispZ; intracellular septation protein A K06190 ispZ; intracellular septation protein D DK53_1767 peptidase M23 family protein K22719 envC; murein hydrolase activator C 99993 Cell motility C 99995 Signaling proteins D DK53_2361 typA; GTP-binding protein TypA/BipA K06207 typA; GTP-binding protein D DK53_2068 phoH-like family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins C 99992 Structural proteins D DK53_1413 glycosyl hydrolases 25 family protein K07273 acm; lysozyme D DK53_2717 glycosyl hydrolases 25 family protein K07273 acm; lysozyme D DK53_1519 hypothetical protein K07275 ompW; outer membrane protein D DK53_1557 asmA family protein K07289 asmA; AsmA protein D DK53_3060 hypothetical protein K07340 ybbJ; inner membrane protein D DK53_1327 efflux transporter, RND family, MFP subunit K01993 ABC-2.TX; HlyD family secretion protein D DK53_2738 efflux transporter, RND family, MFP subunit K01993 ABC-2.TX; HlyD family secretion protein D DK53_623 ccmE family protein K02197 ccmE; cytochrome c-type biogenesis protein CcmE D DK53_622 ccmI; cytochrome c-type biogenesis protein CcmI K02200 ccmH; cytochrome c-type biogenesis protein CcmH D DK53_625 cytochrome C biogenesis family protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH C 99994 Others D DK53_2058 phoU; phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein D DK53_343 hypothetical protein K06195 apaG; ApaG protein D DK53_2876 nosD; nitrous oxide reductase maturation NosD family protein K07218 nosD; nitrous oxidase accessory protein D DK53_2869 nnrS family protein K07234 K07234; uncharacterized protein involved in response to NO D DK53_2873 nosL; nosL K19342 nosL; copper chaperone NosL B B 09194 Poorly characterized C 99996 General function prediction only D DK53_472 colicin V production family protein K03558 cvpA; membrane protein required for colicin V production D DK53_141 acetyltransferase domain protein K02348 elaA; ElaA protein D DK53_1481 csaA; export-related chaperone CsaA family protein K06878 K06878; tRNA-binding protein D DK53_2340 bacterial-like globin family protein K06886 glbN; hemoglobin D DK53_1065 patatin-like phospholipase family protein K07001 K07001; NTE family protein D DK53_2936 patatin-like phospholipase family protein K07001 K07001; NTE family protein D DK53_2214 HAD hydrolase, IA, variant 3 family protein K07025 K07025; putative hydrolase of the HAD superfamily D DK53_3167 HAD hydrolase, IA, variant 3 family protein K07025 K07025; putative hydrolase of the HAD superfamily D DK53_920 sufB; FeS assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB D DK53_922 sufD; FeS assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD D DK53_1899 virulence factor BrkB family protein K07058 K07058; membrane protein D DK53_1992 fxsA cytoplasmic membrane family protein K07113 fxsA; UPF0716 protein FxsA D DK53_591 fe-S metabolism associated domain protein K02426 sufE; cysteine desulfuration protein SufE D DK53_3048 rhodanese-like domain protein K07146 K07146; UPF0176 protein D DK53_1753 lemA family protein K03744 lemA; LemA protein D DK53_2174 slyX family protein K03745 slyX; SlyX protein D DK53_1382 creA family protein K05805 creA; CreA protein D DK53_1751 TLP18.3, Psb32 and MOLO-1 founding s of phosphatase family protein K08988 K08988; putative membrane protein D DK53_1020 hypothetical protein K08990 ycjF; putative membrane protein D DK53_700 type III secretion system lipochaperone family protein K09914 K09914; putative lipoprotein D DK53_1428 phnA family protein K06193 phnA; protein PhnA C 99997 Function unknown D DK53_1752 TLP18.3, Psb32 and MOLO-1 founding s of phosphatase family protein K06872 K06872; uncharacterized protein D DK53_1981 hypothetical protein K06888 K06888; uncharacterized protein D DK53_75 prolyl oligopeptidase family protein K06889 K06889; uncharacterized protein D DK53_102 inhibitor of apoptosis-promoting Bax1 family protein K06890 K06890; uncharacterized protein D DK53_1021 hypothetical protein K06918 K06918; uncharacterized protein D DK53_883 ATPase associated with various cellular activities family protein K06923 K06923; uncharacterized protein D DK53_2402 hypothetical protein K06953 K06953; uncharacterized protein D DK53_1545 GCN5-related N-acetyl-transferase family protein K06975 K06975; uncharacterized protein D DK53_327 succinylglutamate desuccinylase / Aspartoacylase family protein K06987 K06987; uncharacterized protein D DK53_520 glyoxalase/Bleomycin resistance/Dioxygenase superfamily protein K06996 K06996; uncharacterized protein D DK53_2720 glyoxalase/Bleomycin resistance/Dioxygenase superfamily protein K06996 K06996; uncharacterized protein D DK53_1346 pyridoxamine 5'-phosphate oxidase family protein K07005 K07005; uncharacterized protein D DK53_918 dienelactone hydrolase family protein K07018 K07018; uncharacterized protein D DK53_2659 yecA family protein K07039 K07039; uncharacterized protein D DK53_1449 neutral zinc metallopeptidase family protein K07054 K07054; uncharacterized protein D DK53_2548 FAD binding domain protein K07077 K07077; uncharacterized protein D DK53_2707 nitroreductase family protein K07078 K07078; uncharacterized protein D DK53_1178 TRAP transporter solute receptor, TAXI family protein K07080 K07080; uncharacterized protein D DK53_2404 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D DK53_2549 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D DK53_3156 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D DK53_1283 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D DK53_2742 sulfur transport family protein K07112 K07112; uncharacterized protein D DK53_2743 sulfur transport family protein K07112 K07112; uncharacterized protein D DK53_644 putative cytoplasmic protein K07126 K07126; uncharacterized protein D DK53_1656 sel1 repeat family protein K07126 K07126; uncharacterized protein D DK53_2345 ATP-dependent protease La domain protein K07157 K07157; uncharacterized protein D DK53_1061 putative membrane protein insertion efficiency factor K08998 K08998; uncharacterized protein D DK53_1245 hypothetical protein K09005 K09005; uncharacterized protein D DK53_1447 yqey-like family protein K09117 K09117; uncharacterized protein D DK53_2407 hypothetical protein K09137 K09137; uncharacterized protein D DK53_1442 putative zinc-/iron-chelating domain protein K09160 K09160; uncharacterized protein D DK53_325 polyketide cyclase / dehydrase and lipid transport family protein K09386 K09386; uncharacterized protein D DK53_1666 hypothetical protein K09706 K09706; uncharacterized protein D DK53_1900 hypothetical protein K09768 K09768; uncharacterized protein D DK53_1818 YCII-related domain protein K09780 K09780; uncharacterized protein D DK53_2745 hypothetical protein K09781 K09781; uncharacterized protein D DK53_2053 hypothetical protein K09790 K09790; uncharacterized protein D DK53_2347 trm112p-like family protein K09791 K09791; uncharacterized protein D DK53_2967 hypothetical protein K09794 K09794; uncharacterized protein D DK53_3077 hypothetical protein K09795 K09795; uncharacterized protein D DK53_1429 integral membrane TerC family protein K09799 K09799; uncharacterized protein D DK53_967 hypothetical protein K09803 K09803; uncharacterized protein D DK53_1440 bp26; 26 kDa periplasmic immunogenic protein K09807 K09807; uncharacterized protein D DK53_290 hypothetical protein K09862 K09862; uncharacterized protein D DK53_1154 acetyltransferase domain protein K09919 K09919; uncharacterized protein D DK53_1468 hypothetical protein K09922 K09922; uncharacterized protein D DK53_998 hypothetical protein K09924 K09924; uncharacterized protein D DK53_667 hypothetical protein K09928 K09928; uncharacterized protein D DK53_1364 hypothetical protein K09937 K09937; uncharacterized protein D DK53_1259 hypothetical protein K09956 K09956; uncharacterized protein D DK53_213 hypothetical protein K09959 K09959; uncharacterized protein D DK53_1845 traB family protein K09973 K09973; uncharacterized protein D DK53_2305 hutD family protein K09975 K09975; uncharacterized protein D DK53_1372 hypothetical protein K09985 K09985; uncharacterized protein D DK53_1512 hypothetical protein K09986 K09986; uncharacterized protein D DK53_1681 hypothetical protein K09987 K09987; uncharacterized protein D DK53_934 hypothetical protein K09991 K09991; uncharacterized protein D DK53_2077 hypothetical protein K07742 ylxR; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 11, 2024