+D GENES KO #

  KEGG Orthology (KO) - Effusibacillus dendaii

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:eff00010] D skT53_06640 hypothetical protein K25026 glk; glucokinase [EC:2.7.1.2] D skT53_17820 pgi_1; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D skT53_30700 pgi_2; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D skT53_30070 pfkA; ATP-dependent 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D skT53_26360 fbp; fructose-1,6-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D skT53_26290 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D skT53_19280 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D skT53_19300 gapA; glyceraldehyde-3-phosphate dehydrogenase 1 K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D skT53_11600 gapB; glyceraldehyde-3-phosphate dehydrogenase 2 K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59] D skT53_19290 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D skT53_16190 phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D skT53_19270 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D skT53_19260 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D skT53_30080 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D skT53_11930 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D skT53_00790 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D skT53_04530 pdhA; pyruvate dehydrogenase E1 component alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D skT53_00800 pdhB; pyruvate dehydrogenase E1 component subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D skT53_04540 2-oxoisovalerate dehydrogenase subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D skT53_04550 pdhC_2; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D skT53_00810 pdhC_1; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D skT53_00820 pdhD; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D skT53_04560 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D skT53_14120 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D skT53_14130 2-oxoglutarate ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D skT53_22390 adhB; putative zinc-type alcohol dehydrogenase-like protein AdhB K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D skT53_34180 adhA; zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D skT53_05200 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_21090 dhaS; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_35360 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_12970 acs_1; AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_13220 acsA_1; acyl--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_22450 acsA_2; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_26440 acs_2; AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_34360 acsA_3; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_34700 acsA_4; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_05980 acetyl-CoA synthetase K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D skT53_05990 hypothetical protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D skT53_10320 pgcA; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D skT53_06610 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D skT53_17630 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] C 00020 Citrate cycle (TCA cycle) [PATH:eff00020] D skT53_30420 citZ; citrate synthase 2 K01647 CS; citrate synthase [EC:2.3.3.1] D skT53_29910 citB; aconitate hydratase A K01681 ACO; aconitate hydratase [EC:4.2.1.3] D skT53_30110 icd; isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D skT53_19530 isocitrate dehydrogenase K00030 IDH3; isocitrate dehydrogenase (NAD+) [EC:1.1.1.41] D skT53_00820 pdhD; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D skT53_04560 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D skT53_14120 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D skT53_14130 2-oxoglutarate ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D skT53_02330 sucD; succinate--CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D skT53_02320 sucC; succinate--CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D skT53_09370 acetyl-CoA hydrolase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D skT53_34930 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D skT53_34940 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D skT53_34920 sdhC; succinate dehydrogenase cytochrome b558 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D skT53_22510 fdrA; fumarate reductase flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12] D skT53_22520 frdB; fumarate reductase iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12] D skT53_22500 hypothetical protein K25996 frdC; succinate dehydrogenase subunit C D skT53_20040 fumA; fumarate hydratase class I K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D skT53_13750 hypothetical protein K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D skT53_13740 fumX; fumarate hydratase K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D skT53_34060 aspartate ammonia-lyase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D skT53_30120 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D skT53_17630 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D skT53_00790 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D skT53_04530 pdhA; pyruvate dehydrogenase E1 component alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D skT53_00800 pdhB; pyruvate dehydrogenase E1 component subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D skT53_04540 2-oxoisovalerate dehydrogenase subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D skT53_04550 pdhC_2; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D skT53_00810 pdhC_1; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00030 Pentose phosphate pathway [PATH:eff00030] D skT53_17820 pgi_1; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D skT53_30700 pgi_2; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D skT53_30670 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D skT53_30690 6-phosphogluconate dehydrogenase (decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D skT53_01150 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D skT53_28800 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D skT53_26300 tal1; putative transaldolase 1 K00616 TALDO1; transaldolase [EC:2.2.1.2] D skT53_26520 ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D skT53_30650 hxlA; 3-hexulose-6-phosphate synthase K08093 hxlA; 3-hexulose-6-phosphate synthase [EC:4.1.2.43] D skT53_30640 hxlB; 3-hexulose-6-phosphate isomerase K08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27] D skT53_12210 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D skT53_08070 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D skT53_10320 pgcA; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D skT53_06610 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D skT53_23970 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D skT53_25840 2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D skT53_32870 bifunctional glyoxylate/hydroxypyruvate reductase B K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D skT53_04730 aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D skT53_22090 aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D skT53_26290 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D skT53_26360 fbp; fructose-1,6-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D skT53_30070 pfkA; ATP-dependent 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C 00040 Pentose and glucuronate interconversions [PATH:eff00040] D skT53_25870 D-galactarate dehydratase K16849 uxaA1; altronate dehydratase small subunit [EC:4.2.1.7] D skT53_25880 carbohydrate hydrolase K16850 uxaA2; altronate dehydratase large subunit [EC:4.2.1.7] D skT53_28160 gtaB; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D skT53_32720 aldolase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] D skT53_01150 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D skT53_05210 zinc-binding alcohol dehydrogenase K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14] D skT53_05710 hypothetical protein K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14] D skT53_25860 hpaG; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase K14259 kdaD; 2-dehydro-3-deoxy-D-arabinonate dehydratase [EC:4.2.1.141] D skT53_06070 ycbD; putative aldehyde dehydrogenase YcbD K22187 xylA; alpha-ketoglutaric semialdehyde dehydrogenase [EC:1.2.1.-] C 00051 Fructose and mannose metabolism [PATH:eff00051] D skT53_06620 manA; mannose-6-phosphate isomerase ManA K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D skT53_06610 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D skT53_21010 manC; mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D skT53_06580 hypothetical protein K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D skT53_30070 pfkA; ATP-dependent 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D skT53_26360 fbp; fructose-1,6-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D skT53_05210 zinc-binding alcohol dehydrogenase K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14] D skT53_05710 hypothetical protein K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14] D skT53_26290 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D skT53_19280 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D skT53_26520 ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] C 00052 Galactose metabolism [PATH:eff00052] D skT53_27920 UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D skT53_29110 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D skT53_28160 gtaB; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D skT53_10320 pgcA; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D skT53_06610 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D skT53_06640 hypothetical protein K25026 glk; glucokinase [EC:2.7.1.2] D skT53_30070 pfkA; ATP-dependent 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C 00053 Ascorbate and aldarate metabolism [PATH:eff00053] D skT53_32720 aldolase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] D skT53_05200 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_21090 dhaS; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_35360 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_25860 hpaG; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase K14259 kdaD; 2-dehydro-3-deoxy-D-arabinonate dehydratase [EC:4.2.1.141] C 00500 Starch and sucrose metabolism [PATH:eff00500] D skT53_28160 gtaB; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D skT53_10320 pgcA; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D skT53_06610 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D skT53_06640 hypothetical protein K25026 glk; glucokinase [EC:2.7.1.2] D skT53_17820 pgi_1; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D skT53_30700 pgi_2; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:eff00520] D skT53_22690 glutamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D skT53_22700 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D skT53_23980 glmU; bifunctional protein GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D skT53_10560 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D skT53_27250 murA1; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D skT53_10570 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D skT53_27010 UDP-N-acetyl glucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D skT53_28650 UDP-N-acetyl glucosamine 2-epimerase K18429 legG; GDP/UDP-N,N'-diacetylbacillosamine 2-epimerase (hydrolysing) [EC:3.2.1.184] D skT53_28690 hypothetical protein K18431 legF; CMP-N,N'-diacetyllegionaminic acid synthase [EC:2.7.7.82] D skT53_06640 hypothetical protein K25026 glk; glucokinase [EC:2.7.1.2] D skT53_10320 pgcA; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D skT53_06610 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D skT53_28160 gtaB; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D skT53_27920 UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D skT53_29110 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D skT53_17820 pgi_1; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D skT53_30700 pgi_2; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D skT53_06620 manA; mannose-6-phosphate isomerase ManA K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D skT53_06580 hypothetical protein K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D skT53_21010 manC; mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D skT53_28640 perosamine synthetase K13010 per; perosamine synthetase [EC:2.6.1.102] C 00620 Pyruvate metabolism [PATH:eff00620] D skT53_12970 acs_1; AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_13220 acsA_1; acyl--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_22450 acsA_2; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_26440 acs_2; AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_34360 acsA_3; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_34700 acsA_4; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_14120 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D skT53_14130 2-oxoglutarate ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D skT53_00790 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D skT53_04530 pdhA; pyruvate dehydrogenase E1 component alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D skT53_00800 pdhB; pyruvate dehydrogenase E1 component subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D skT53_04540 2-oxoisovalerate dehydrogenase subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D skT53_04550 pdhC_2; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D skT53_00810 pdhC_1; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D skT53_00820 pdhD; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D skT53_04560 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D skT53_34180 adhA; zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D skT53_22390 adhB; putative zinc-type alcohol dehydrogenase-like protein AdhB K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D skT53_30080 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D skT53_30060 accA; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D skT53_09070 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D skT53_10950 accB_1; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D skT53_11280 accB_2; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D skT53_09060 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D skT53_11290 accC2; biotin carboxylase 2 K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D skT53_30050 accD; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D skT53_05200 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_21090 dhaS; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_35360 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_09370 acetyl-CoA hydrolase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D skT53_06100 acyl CoA:acetate/3-ketoacid CoA transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1] D skT53_15040 propionate CoA-transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1] D skT53_05980 acetyl-CoA synthetase K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D skT53_05990 hypothetical protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D skT53_28860 pyruvate oxidase K00158 spxB; pyruvate oxidase [EC:1.2.3.3] D skT53_34540 pyruvate oxidase K00158 spxB; pyruvate oxidase [EC:1.2.3.3] D skT53_17370 2-hydroxy-acid oxidase K00102 LDHD; D-lactate dehydrogenase (cytochrome) [EC:1.1.2.4] D skT53_25620 glyoxal reductase K23257 yvgN; methylglyoxal/glyoxal reductase [EC:1.1.1.283 1.1.1.-] D skT53_13130 yetH; hypothetical protein K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D skT53_25410 lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D skT53_07580 MBL fold metallo-hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D skT53_32870 bifunctional glyoxylate/hydroxypyruvate reductase B K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D skT53_24260 malate oxidoreductase K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D skT53_30030 ytsJ; putative NAD-dependent malic enzyme 4 K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D skT53_30120 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D skT53_20040 fumA; fumarate hydratase class I K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D skT53_13750 hypothetical protein K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D skT53_13740 fumX; fumarate hydratase K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D skT53_34060 aspartate ammonia-lyase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D skT53_22510 fdrA; fumarate reductase flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12] D skT53_22520 frdB; fumarate reductase iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12] D skT53_22500 hypothetical protein K25996 frdC; succinate dehydrogenase subunit C D skT53_03740 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D skT53_17630 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D skT53_11930 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D skT53_25950 malate synthase K01638 aceB; malate synthase [EC:2.3.3.9] D skT53_04310 thl_1; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_11210 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_12300 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_18240 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_26210 mmgA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_27020 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_29940 thl_2; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_30990 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:eff00630] D skT53_26030 isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1] D skT53_12970 acs_1; AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_13220 acsA_1; acyl--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_22450 acsA_2; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_26440 acs_2; AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_34360 acsA_3; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_34700 acsA_4; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_25950 malate synthase K01638 aceB; malate synthase [EC:2.3.3.9] D skT53_30120 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D skT53_30420 citZ; citrate synthase 2 K01647 CS; citrate synthase [EC:2.3.3.1] D skT53_29910 citB; aconitate hydratase A K01681 ACO; aconitate hydratase [EC:4.2.1.3] D skT53_04310 thl_1; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_11210 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_12300 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_18240 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_26210 mmgA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_27020 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_29940 thl_2; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_08270 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D skT53_08260 methylmalonyl-CoA carboxyltransferase K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15] D skT53_06850 methylmalonyl-CoA mutase K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D skT53_08280 methylmalonyl-CoA mutase K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D skT53_06840 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D skT53_08290 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D skT53_26970 glcD_3; glycolate oxidase subunit GlcD K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14] D skT53_16870 glcD_1; glycolate oxidase subunit GlcD K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14] D skT53_18070 glcD_2; FAD-binding protein K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14] D skT53_18090 glcE; glycolate oxidase K11472 glcE; glycolate dehydrogenase FAD-binding subunit [EC:1.1.99.14] D skT53_16860 glcF_1; putative glycolate oxidase iron-sulfur subunit K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14] D skT53_18080 glycolate oxidase iron-sulfur subunit K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14] D skT53_26980 glcF_2; putative glycolate oxidase iron-sulfur subunit K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14] D skT53_12500 D-glycerate dehydrogenase K00015 gyaR; glyoxylate reductase [EC:1.1.1.26] D skT53_15650 D-glycerate dehydrogenase K00015 gyaR; glyoxylate reductase [EC:1.1.1.26] D skT53_32870 bifunctional glyoxylate/hydroxypyruvate reductase B K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D skT53_21110 hypothetical protein K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D skT53_08750 alanine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D skT53_07000 hypothetical protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D skT53_07010 hypothetical protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D skT53_07030 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D skT53_26540 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D skT53_09260 gcvPA; putative glycine dehydrogenase (decarboxylating) subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D skT53_09250 gcvPB; putative glycine dehydrogenase (decarboxylating) subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D skT53_09270 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D skT53_00820 pdhD; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D skT53_04560 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D skT53_03580 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein D skT53_04780 hyi; hydroxypyruvate isomerase K01816 hyi; hydroxypyruvate isomerase [EC:5.3.1.22] D skT53_30920 garR_2; 2-hydroxy-3-oxopropionate reductase K00042 garR; 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60] D skT53_30310 glxK; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D skT53_26990 ycsA; putative tartrate dehydrogenase/decarboxylase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] D skT53_25840 2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D skT53_11490 yjgC; putative oxidoreductase YjgC K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D skT53_13620 formate dehydrogenase subunit alpha K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D skT53_13610 4Fe-4S ferredoxin K00124 fdoH; formate dehydrogenase iron-sulfur subunit D skT53_12710 cyclase K07130 kynB; arylformamidase [EC:3.5.1.9] D skT53_30710 cyclase K07130 kynB; arylformamidase [EC:3.5.1.9] D skT53_00270 acetamidase K01455 E3.5.1.49; formamidase [EC:3.5.1.49] D skT53_09490 fmdA; formamidase K01455 E3.5.1.49; formamidase [EC:3.5.1.49] C 00640 Propanoate metabolism [PATH:eff00640] D skT53_12970 acs_1; AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_13220 acsA_1; acyl--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_22450 acsA_2; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_26440 acs_2; AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_34360 acsA_3; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_34700 acsA_4; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_06100 acyl CoA:acetate/3-ketoacid CoA transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1] D skT53_15040 propionate CoA-transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1] D skT53_05980 acetyl-CoA synthetase K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D skT53_05990 hypothetical protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D skT53_00820 pdhD; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D skT53_04560 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D skT53_04330 acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D skT53_26240 acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D skT53_29920 yhfP; putative quinone oxidoreductase YhfP K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-] D skT53_30060 accA; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D skT53_09070 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D skT53_10950 accB_1; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D skT53_11280 accB_2; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D skT53_09060 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D skT53_11290 accC2; biotin carboxylase 2 K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D skT53_30050 accD; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D skT53_08260 methylmalonyl-CoA carboxyltransferase K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15] D skT53_08270 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D skT53_06850 methylmalonyl-CoA mutase K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D skT53_08280 methylmalonyl-CoA mutase K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D skT53_06840 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D skT53_08290 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D skT53_02320 sucC; succinate--CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D skT53_02330 sucD; succinate--CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D skT53_17460 hypothetical protein K09788 prpF; 2-methylaconitate isomerase [EC:5.3.3.-] D skT53_25620 glyoxal reductase K23257 yvgN; methylglyoxal/glyoxal reductase [EC:1.1.1.283 1.1.1.-] D skT53_05730 propanediol dehydratase large subunit K01699 pduC; propanediol dehydratase large subunit [EC:4.2.1.28] D skT53_05740 propanediol dehydratase medium subunit K13919 pduD; propanediol dehydratase medium subunit [EC:4.2.1.28] D skT53_05750 glycerol dehydrogenase K13920 pduE; propanediol dehydratase small subunit [EC:4.2.1.28] C 00650 Butanoate metabolism [PATH:eff00650] D skT53_04310 thl_1; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_11210 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_12300 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_18240 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_26210 mmgA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_27020 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_29940 thl_2; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_18060 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D skT53_18270 hypothetical protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D skT53_18310 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D skT53_26220 hbd; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D skT53_15810 enoyl-CoA hydratase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D skT53_06120 caiD; enoyl-CoA hydratase K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17] D skT53_18220 3-hydroxybutyryl-CoA dehydratase K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17] D skT53_26230 crt; short-chain-enoyl-CoA hydratase K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17] D skT53_11270 yngF; putative enoyl-CoA hydratase/isomerase YngF K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17] D skT53_04330 acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D skT53_26240 acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D skT53_18250 hypothetical protein K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9] D skT53_26990 ycsA; putative tartrate dehydrogenase/decarboxylase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] D skT53_20680 maiA; maleate isomerase K01799 nicE; maleate isomerase [EC:5.2.1.1] D skT53_34930 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D skT53_34940 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D skT53_34920 sdhC; succinate dehydrogenase cytochrome b558 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D skT53_22510 fdrA; fumarate reductase flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12] D skT53_22520 frdB; fumarate reductase iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12] D skT53_22500 hypothetical protein K25996 frdC; succinate dehydrogenase subunit C D skT53_09370 acetyl-CoA hydrolase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D skT53_09470 4-hydroxybutyryl-CoA dehydratase K14534 abfD; 4-hydroxybutyryl-CoA dehydratase / vinylacetyl-CoA-Delta-isomerase [EC:4.2.1.120 5.3.3.3] D skT53_14120 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D skT53_14130 2-oxoglutarate ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D skT53_11220 hypothetical protein K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D skT53_35320 yngG; hydroxymethylglutaryl-CoA lyase YngG K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D skT53_04880 acetoacetyl-CoA synthetase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16] D skT53_12980 3-hydroxybutyrate dehydrogenase K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30] D skT53_18830 adh_2; alcohol dehydrogenase K18382 adh1; NAD+-dependent secondary alcohol dehydrogenase Adh1 [EC:1.1.1.-] D skT53_18770 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D skT53_30960 ilvB; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D skT53_32140 hypothetical protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D skT53_30970 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D skT53_04320 3-oxoacyl-ACP reductase K18009 budC; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304] C 00660 C5-Branched dibasic acid metabolism [PATH:eff00660] D skT53_18770 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D skT53_30960 ilvB; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D skT53_32140 hypothetical protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D skT53_30970 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D skT53_02320 sucC; succinate--CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D skT53_02330 sucD; succinate--CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D skT53_06090 menG_2; S-adenosylmethionine--2-demethylmenaquinone methyltransferase K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17] D skT53_11360 leuC_1; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D skT53_17760 leuC_2; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D skT53_11350 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D skT53_17770 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D skT53_19520 hypothetical protein K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D skT53_31000 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:eff00562] D skT53_05500 hypothetical protein K01114 plc; phospholipase C [EC:3.1.4.3] D skT53_17080 hisN; inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D skT53_19280 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:eff00190] D skT53_27130 nuoB; NADH-quinone oxidoreductase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D skT53_27140 hypothetical protein K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2] D skT53_27150 nuoD; NADH-quinone oxidoreductase subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2] D skT53_27160 nuoH; NADH-quinone oxidoreductase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D skT53_27170 hypothetical protein K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D skT53_27180 nuoJ; NADH:ubiquinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2] D skT53_27190 nuoK; NADH-quinone oxidoreductase subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2] D skT53_27200 NADH-quinone oxidoreductase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D skT53_27210 nuoM; NADH-quinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D skT53_27220 nuoN; NADH-quinone oxidoreductase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D skT53_35770 yumB; NADH dehydrogenase-like protein YumB K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D skT53_34930 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D skT53_34940 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D skT53_34920 sdhC; succinate dehydrogenase cytochrome b558 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D skT53_22510 fdrA; fumarate reductase flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12] D skT53_22520 frdB; fumarate reductase iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12] D skT53_22500 hypothetical protein K25996 frdC; succinate dehydrogenase subunit C D skT53_03960 menaquinol-cytochrome C reductase iron-sulfur subunit K03886 qcrA; quinol---cytochrome c reductase iron-sulfur subunit, bacillus type [EC:7.1.1.8] D skT53_03970 cytochrome b6 K03887 qcrB; quinol---cytochrome c reductase cytochrome b subunit, bacillus type [EC:7.1.1.8] D skT53_03980 menaquinol-cytochrome c reductase cytochrome b/c subunit K03888 qcrC; quinol---cytochrome c reductase cytochrome c subunit, bacillus type [EC:7.1.1.8] D skT53_18550 ctaB2; protoheme IX farnesyltransferase 2 K02257 COX10; heme o synthase [EC:2.5.1.141] D skT53_18560 ctaD; cytochrome c oxidase subunit 1 K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D skT53_18660 cytochrome c oxidase subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D skT53_18570 coxB1; cytochrome c oxidase subunit 2 K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D skT53_18670 cytochrome c oxidase subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D skT53_28810 hypothetical protein K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D skT53_20530 ctaA; heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9] D skT53_34660 cytochrome c oxidase, cbb3-type subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D skT53_34650 hypothetical protein K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D skT53_24990 qoxD; cytochrome aa3 quinol oxidase subunit IV K02829 qoxD; cytochrome aa3-600 menaquinol oxidase subunit IV [EC:7.1.1.5] D skT53_25000 cytochrome aa3 quinol oxidase subunit III K02828 qoxC; cytochrome aa3-600 menaquinol oxidase subunit III [EC:7.1.1.5] D skT53_25010 qoxB; cytochrome ubiquinol oxidase subunit I K02827 qoxB; cytochrome aa3-600 menaquinol oxidase subunit I [EC:7.1.1.5] D skT53_25020 qoxA; quinol oxidase subunit 2 K02826 qoxA; cytochrome aa3-600 menaquinol oxidase subunit II [EC:7.1.1.5] D skT53_20330 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D skT53_35150 ythA; putative cytochrome bd menaquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D skT53_09800 hypothetical protein K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D skT53_20320 cytochrome D ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D skT53_35140 ythB; putative cytochrome bd menaquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D skT53_27080 atpA; ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D skT53_27100 atpD; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D skT53_27090 atpG; ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D skT53_27070 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D skT53_27110 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D skT53_27040 atpB; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a D skT53_27060 atpF; ATP synthase subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b D skT53_27050 atpE; F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D skT53_34350 ppa; inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] D skT53_29150 ppaX; pyrophosphatase PpaX K06019 ppaX; pyrophosphatase PpaX [EC:3.6.1.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms C 00720 Carbon fixation pathways in prokaryotes C 00680 Methane metabolism [PATH:eff00680] D skT53_10180 yycR; putative zinc-type alcohol dehydrogenase-like protein YycR K00148 fdhA; glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46] D skT53_22390 adhB; putative zinc-type alcohol dehydrogenase-like protein AdhB K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D skT53_11490 yjgC; putative oxidoreductase YjgC K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D skT53_13620 formate dehydrogenase subunit alpha K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D skT53_13610 4Fe-4S ferredoxin K00124 fdoH; formate dehydrogenase iron-sulfur subunit D skT53_26540 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D skT53_08750 alanine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D skT53_19260 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D skT53_03740 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D skT53_30120 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D skT53_26290 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D skT53_26360 fbp; fructose-1,6-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D skT53_30070 pfkA; ATP-dependent 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D skT53_30640 hxlB; 3-hexulose-6-phosphate isomerase K08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27] D skT53_30650 hxlA; 3-hexulose-6-phosphate synthase K08093 hxlA; 3-hexulose-6-phosphate synthase [EC:4.1.2.43] D skT53_12970 acs_1; AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_13220 acsA_1; acyl--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_22450 acsA_2; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_26440 acs_2; AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_34360 acsA_3; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_34700 acsA_4; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_16190 phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D skT53_19270 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D skT53_08590 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D skT53_25780 dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D skT53_08170 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D skT53_03360 phosphosulfolactate synthase K08097 comA; phosphosulfolactate synthase [EC:4.4.1.19] C 00910 Nitrogen metabolism [PATH:eff00910] D skT53_00270 acetamidase K01455 E3.5.1.49; formamidase [EC:3.5.1.49] D skT53_09490 fmdA; formamidase K01455 E3.5.1.49; formamidase [EC:3.5.1.49] D skT53_01650 narK; MFS transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D skT53_02050 nasA; nitrate transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D skT53_01680 hypothetical protein K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D skT53_01690 hypothetical protein K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D skT53_01700 narH; nitrate reductase beta chain K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D skT53_01720 nitrate reductase subunit gamma K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D skT53_01760 nasC; assimilatory nitrate reductase catalytic subunit K00372 nasC; assimilatory nitrate reductase catalytic subunit [EC:1.7.99.-] D skT53_01770 nasD; nitrite reductase [NAD(P)H] K26139 nasD; nitrite reductase [NAD(P)H] large subunit [EC:1.7.1.4] D skT53_01780 nasE; nitrite reductase NAD(P)H small subunit K26138 nasE; nitrite reductase [NAD(P)H] small subunit [EC:1.7.1.4] D skT53_34240 ferredoxin--nitrite reductase K00366 nirA; ferredoxin-nitrite reductase [EC:1.7.7.1] D skT53_00470 nitronate monooxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D skT53_06280 hypothetical protein K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D skT53_03400 gudB; cryptic catabolic NAD-specific glutamate dehydrogenase GudB K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D skT53_07000 hypothetical protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D skT53_07010 hypothetical protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D skT53_07030 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D skT53_03190 gltS; glutamate synthase K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D skT53_25700 glutamate synthase subunit alpha K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D skT53_25710 gltD; glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] C 00920 Sulfur metabolism [PATH:eff00920] D skT53_22750 sat_1; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D skT53_34290 sat_2; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D skT53_34300 yisZ; putative adenylyl-sulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D skT53_02930 DHH family phosphoesterase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] D skT53_24090 phosphoesterase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] D skT53_22770 cysH; phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D skT53_34280 yitB; putative phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D skT53_31450 cysJ; sulfite reductase [NADPH] flavoprotein alpha-component K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] D skT53_31460 cysI; sulfite reductase [NADPH] hemoprotein beta-component K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2] D skT53_01600 hypothetical protein K16937 doxD; thiosulfate dehydrogenase (quinone) large subunit [EC:1.8.5.2] D skT53_26010 thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D skT53_23460 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D skT53_32060 hypothetical protein K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D skT53_16390 hypothetical protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D skT53_23670 cysK; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] D skT53_34910 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D skT53_03380 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:eff00061] D skT53_30060 accA; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D skT53_09070 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D skT53_10950 accB_1; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D skT53_11280 accB_2; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D skT53_09060 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D skT53_11290 accC2; biotin carboxylase 2 K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D skT53_30050 accD; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D skT53_01380 acpA; acyl carrier protein K02078 acpP; acyl carrier protein D skT53_01360 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D skT53_01350 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D skT53_01390 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D skT53_01370 fabG_1; 3-oxoacyl-[acyl-carrier-protein] reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D skT53_04360 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D skT53_08680 short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D skT53_11150 fabG_2; beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D skT53_11440 beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D skT53_18460 fabG_3; 3-oxoacyl-[acyl-carrier-protein] reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D skT53_25630 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D skT53_32420 fabG_4; 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D skT53_27330 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D skT53_19890 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D skT53_18380 enoyl-ACP reductase II K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9] D skT53_19840 fabL; enoyl-[acyl-carrier-protein] reductase [NADPH] FabL K10780 fabL; enoyl-[acyl-carrier protein] reductase III [EC:1.3.1.104] D skT53_21920 acyl-ACP desaturase K03921 FAB2; acyl-[acyl-carrier-protein] desaturase [EC:1.14.19.2 1.14.19.11 1.14.19.26] D skT53_04380 lcfA_1; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_04720 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_05070 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_09440 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_13320 hypothetical protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_18290 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_19690 lcfA_2; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_29580 ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:eff00071] D skT53_04310 thl_1; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_11210 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_12300 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_18240 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_26210 mmgA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_27020 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_29940 thl_2; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_15800 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D skT53_15810 enoyl-CoA hydratase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D skT53_04330 acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D skT53_26240 acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D skT53_04770 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D skT53_05970 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D skT53_11020 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D skT53_11180 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D skT53_11200 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D skT53_13390 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D skT53_35290 acd; acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D skT53_04380 lcfA_1; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_04720 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_05070 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_09440 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_13320 hypothetical protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_18290 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_19690 lcfA_2; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_29580 ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_22390 adhB; putative zinc-type alcohol dehydrogenase-like protein AdhB K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D skT53_34180 adhA; zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D skT53_05200 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_21090 dhaS; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_35360 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:eff00561] D skT53_30310 glxK; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D skT53_05200 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_21090 dhaS; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_35360 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_04980 hypothetical protein K00864 glpK; glycerol kinase [EC:2.7.1.30] D skT53_01340 plsX; phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D skT53_03560 plsY; glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D skT53_03480 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D skT53_12030 hypothetical protein K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D skT53_01320 diacylglycerol kinase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107] D skT53_20910 dagK; diacylglycerol kinase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107] D skT53_27660 ugtP; processive diacylglycerol beta-glucosyltransferase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315] D skT53_27670 hypothetical protein K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315] C 00564 Glycerophospholipid metabolism [PATH:eff00564] D skT53_03570 gpsA; glycerol-3-phosphate dehydrogenase [NAD(P)+] K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D skT53_04990 hypothetical protein K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D skT53_03560 plsY; glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D skT53_03480 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D skT53_12030 hypothetical protein K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D skT53_01320 diacylglycerol kinase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107] D skT53_20910 dagK; diacylglycerol kinase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107] D skT53_05500 hypothetical protein K01114 plc; phospholipase C [EC:3.1.4.3] D skT53_00690 lysophospholipase K01048 pldB; lysophospholipase [EC:3.1.1.5] D skT53_01300 lysophospholipase K01048 pldB; lysophospholipase [EC:3.1.1.5] D skT53_14100 glpQ_1; glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D skT53_15560 glpQ_2; glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D skT53_02820 cdsA; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D skT53_23500 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D skT53_24100 psd; phosphatidylserine decarboxylase proenzyme K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D skT53_07350 pgsA_1; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D skT53_17020 cls2; cardiolipin synthase 2 K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D skT53_25720 hypothetical protein K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D skT53_27320 pgsA_2; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41] D skT53_21180 geranylgeranylglyceryl/heptaprenylglyceryl phosphate synthase K07094 pcrB; heptaprenylglyceryl phosphate synthase [EC:2.5.1.-] D skT53_29160 acetyltransferase K24872 yvoF; heptaprenylglycerol acetyltransferase [EC:2.3.1.-] C 00565 Ether lipid metabolism D skT53_05500 hypothetical protein K01114 plc; phospholipase C [EC:3.1.4.3] C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism [PATH:eff00592] D skT53_15800 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01040 Biosynthesis of unsaturated fatty acids [PATH:eff01040] D skT53_21920 acyl-ACP desaturase K03921 FAB2; acyl-[acyl-carrier-protein] desaturase [EC:1.14.19.2 1.14.19.11 1.14.19.26] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:eff00230] D skT53_08190 nudF; ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D skT53_08070 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D skT53_10320 pgcA; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D skT53_06610 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D skT53_23970 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D skT53_21370 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D skT53_21330 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D skT53_21350 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D skT53_21290 purT; phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21] D skT53_21380 purL; phosphoribosylformylglycinamidine synthase subunit PurL K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3] D skT53_21400 purS; phosphoribosylformylglycinamidine synthase subunit PurS K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3] D skT53_21390 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D skT53_21360 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D skT53_21430 purK; N5-carboxyaminoimidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D skT53_21440 purE; N5-carboxyaminoimidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D skT53_21410 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D skT53_21420 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D skT53_21340 purH; bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D skT53_31220 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D skT53_14160 5'(3')-deoxyribonucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D skT53_19680 ser/threonine protein phosphatase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D skT53_08060 deoD; purine nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D skT53_00990 UPF0345 protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2] D skT53_10450 laccase domain protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D skT53_23730 hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D skT53_24460 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D skT53_03720 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D skT53_34990 non-canonical purine NTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D skT53_13080 xanthine dehydrogenase K13479 ygeT; xanthine dehydrogenase FAD-binding subunit [EC:1.17.1.4] D skT53_21500 guaA; GMP synthase [glutamine-hydrolyzing] K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D skT53_01040 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D skT53_32510 hypothetical protein K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D skT53_32320 hypothetical protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D skT53_35370 ribonucleotide-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D skT53_31230 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D skT53_05610 exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D skT53_25070 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D skT53_16790 putative adenine deaminase K01486 ade; adenine deaminase [EC:3.5.4.2] D skT53_07280 ymdB; hypothetical protein K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] D skT53_23030 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D skT53_34300 yisZ; putative adenylyl-sulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D skT53_22750 sat_1; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D skT53_34290 sat_2; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D skT53_01910 ureC2; urease subunit alpha 2 K01428 ureC; urease subunit alpha [EC:3.5.1.5] D skT53_01900 ureA; urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5] D skT53_21310 ywrD; putative gamma-glutamyltransferase YwrD K22602 hpxW; oxamate amidohydrolase [EC:3.5.1.126] C 00240 Pyrimidine metabolism [PATH:eff00240] D skT53_10240 pyrAB; carbamoyl-phosphate synthase pyrimidine-specific large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D skT53_28920 carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D skT53_10250 carA_1; carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D skT53_28910 carA_2; carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D skT53_10270 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D skT53_10260 pyrC; dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D skT53_10220 pyrD; dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14] D skT53_10230 pyrK; dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit D skT53_10200 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D skT53_10210 pyrF; orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D skT53_02790 smbA; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D skT53_03720 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D skT53_00560 Maf-like protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D skT53_26270 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D skT53_03470 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D skT53_14160 5'(3')-deoxyribonucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D skT53_19680 ser/threonine protein phosphatase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D skT53_00990 UPF0345 protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2] D skT53_27000 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D skT53_10290 pyrR; bifunctional protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D skT53_07280 ymdB; hypothetical protein K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] D skT53_08050 pdp; pyrimidine-nucleoside phosphorylase K00756 pdp; pyrimidine-nucleoside phosphorylase [EC:2.4.2.2] D skT53_12020 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5] D skT53_32510 hypothetical protein K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D skT53_32320 hypothetical protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D skT53_35370 ribonucleotide-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D skT53_23800 dCMP deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12] D skT53_05620 hypothetical protein K00943 tmk; dTMP kinase [EC:2.7.4.9] D skT53_05630 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D skT53_24240 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D skT53_03020 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D skT53_07750 hypothetical protein K01431 UPB1; beta-ureidopropionase [EC:3.5.1.6] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:eff00250] D skT53_26140 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D skT53_13240 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D skT53_03410 ansA; L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D skT53_09530 asnB; asparagine synthetase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D skT53_14030 asparagine synthetase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D skT53_19080 hydrolase K13566 NIT2; omega-amidase [EC:3.5.1.3] D skT53_08750 alanine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D skT53_08120 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D skT53_00530 aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1] D skT53_28940 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D skT53_28950 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D skT53_25070 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D skT53_21420 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D skT53_10270 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D skT53_03190 gltS; glutamate synthase K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D skT53_25700 glutamate synthase subunit alpha K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D skT53_25710 gltD; glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D skT53_03400 gudB; cryptic catabolic NAD-specific glutamate dehydrogenase GudB K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D skT53_16280 rocA; 1-pyrroline-5-carboxylate dehydrogenase K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88] D skT53_07000 hypothetical protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D skT53_07010 hypothetical protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D skT53_07030 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D skT53_10240 pyrAB; carbamoyl-phosphate synthase pyrimidine-specific large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D skT53_28920 carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D skT53_10250 carA_1; carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D skT53_28910 carA_2; carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D skT53_21390 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D skT53_22690 glutamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D skT53_21370 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:eff00260] D skT53_03070 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D skT53_34880 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D skT53_03060 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D skT53_30930 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D skT53_09320 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39] D skT53_09330 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D skT53_17220 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D skT53_22370 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D skT53_12910 threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D skT53_26540 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D skT53_08750 alanine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D skT53_32870 bifunctional glyoxylate/hydroxypyruvate reductase B K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D skT53_30310 glxK; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D skT53_16190 phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D skT53_19270 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D skT53_08590 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D skT53_25780 dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D skT53_08170 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D skT53_09260 gcvPA; putative glycine dehydrogenase (decarboxylating) subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D skT53_09250 gcvPB; putative glycine dehydrogenase (decarboxylating) subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D skT53_09270 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D skT53_00820 pdhD; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D skT53_04560 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D skT53_03580 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein D skT53_23500 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D skT53_32300 gbsA; betaine-aldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8] D skT53_34560 threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D skT53_03880 trpA; tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D skT53_03870 trpB; tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D skT53_16900 ectB; diaminobutyrate--2-oxoglutarate transaminase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76] D skT53_16910 ectA; L-2,4-diaminobutyric acid acetyltransferase K06718 ectA; L-2,4-diaminobutyric acid acetyltransferase [EC:2.3.1.178] D skT53_16890 ectC; L-ectoine synthase K06720 ectC; L-ectoine synthase [EC:4.2.1.108] D skT53_16880 ectoine hydroxylase K10674 ectD; ectoine hydroxylase [EC:1.14.11.55] C 00270 Cysteine and methionine metabolism [PATH:eff00270] D skT53_23460 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D skT53_32060 hypothetical protein K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D skT53_16390 hypothetical protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D skT53_23670 cysK; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] D skT53_03390 metC-2; cystathionine gamma-synthase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D skT53_18640 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D skT53_28260 metK; S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D skT53_15830 speH2; S-adenosylmethionine decarboxylase proenzyme 2 K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D skT53_30550 speD; S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D skT53_26160 speE; polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16] D skT53_10450 laccase domain protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D skT53_04200 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28] D skT53_04170 putative 6-oxopurine nucleoside phosphorylase K19696 mtiP; 5'-methylthioinosine phosphorylase [EC:2.4.2.44] D skT53_04180 mtnA; methylthioribose-1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23] D skT53_15350 mtnB; methylthioribulose-1-phosphate dehydratase K08964 mtnB; methylthioribulose-1-phosphate dehydratase [EC:4.2.1.109] D skT53_15370 mtnW; 2,3-diketo-5-methylthiopentyl-1-phosphate enolase K08965 mtnW; 2,3-diketo-5-methylthiopentyl-1-phosphate enolase [EC:5.3.2.5] D skT53_15360 mtnX; 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase K08966 mtnX; 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase [EC:3.1.3.87] D skT53_15340 mtnD; acireductone dioxygenase K08967 mtnD; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [EC:1.13.11.53 1.13.11.54] D skT53_15380 aminotransferase K08969 mtnE; L-glutamine---4-(methylsulfanyl)-2-oxobutanoate aminotransferase [EC:2.6.1.117] D skT53_14650 hypothetical protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D skT53_14660 hypothetical protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D skT53_17970 DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D skT53_21870 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D skT53_03070 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D skT53_34880 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D skT53_03060 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D skT53_30930 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D skT53_34910 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D skT53_03380 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D skT53_35670 O-acetylhomoserine aminocarboxypropyltransferase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D skT53_30950 ilvE; branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D skT53_26140 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D skT53_26010 thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D skT53_05870 hypothetical protein K16843 slcC; (S)-sulfolactate dehydrogenase [EC:1.1.1.310] D skT53_30120 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D skT53_05830 hypothetical protein K16845 suyA; (2R)-sulfolactate sulfo-lyase subunit alpha [EC:4.4.1.24] D skT53_05840 D-galactarate dehydratase K16846 suyB; (2R)-sulfolactate sulfo-lyase subunit beta [EC:4.4.1.24] D skT53_08590 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D skT53_25780 dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D skT53_08170 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:eff00280] D skT53_30950 ilvE; branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D skT53_00820 pdhD; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D skT53_04560 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D skT53_04330 acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D skT53_26240 acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D skT53_04770 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D skT53_05970 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D skT53_11020 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D skT53_11180 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D skT53_11200 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D skT53_13390 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D skT53_35290 acd; acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D skT53_15800 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D skT53_08260 methylmalonyl-CoA carboxyltransferase K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15] D skT53_08270 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D skT53_06850 methylmalonyl-CoA mutase K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D skT53_08280 methylmalonyl-CoA mutase K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D skT53_06840 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D skT53_08290 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D skT53_05200 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_21090 dhaS; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_35360 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_35320 yngG; hydroxymethylglutaryl-CoA lyase YngG K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D skT53_04880 acetoacetyl-CoA synthetase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16] D skT53_04310 thl_1; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_11210 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_12300 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_18240 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_26210 mmgA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_27020 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_29940 thl_2; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_11220 hypothetical protein K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:eff00290] D skT53_34560 threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D skT53_11360 leuC_1; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D skT53_17760 leuC_2; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D skT53_11350 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D skT53_17770 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D skT53_19520 hypothetical protein K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D skT53_31000 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D skT53_18770 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D skT53_30960 ilvB; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D skT53_32140 hypothetical protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D skT53_30970 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D skT53_30980 ilvC2; ketol-acid reductoisomerase (NADP(+)) 2 K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D skT53_25820 ilvD_1; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D skT53_30900 ilvD_2; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D skT53_30950 ilvE; branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D skT53_30990 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:eff00300] D skT53_30930 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D skT53_03070 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D skT53_34880 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D skT53_03060 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D skT53_03080 dapA_1; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D skT53_05530 dapA_2; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D skT53_25390 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D skT53_04060 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D skT53_28850 argD_1; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D skT53_09410 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D skT53_15220 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D skT53_30510 aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83] D skT53_07920 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D skT53_26310 dapH; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase K05822 dapH; tetrahydrodipicolinate N-acetyltransferase [EC:2.3.1.89] D skT53_26340 aminotransferase K00841 patA; aminotransferase [EC:2.6.1.-] D skT53_26320 N-acetyldiaminopimelate deacetylase K05823 dapL; N-acetyldiaminopimelate deacetylase [EC:3.5.1.47] D skT53_11730 aminotransferase K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] D skT53_10630 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D skT53_10620 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:eff00310] D skT53_00820 pdhD; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D skT53_04560 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D skT53_04310 thl_1; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_11210 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_12300 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_18240 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_26210 mmgA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_27020 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_29940 thl_2; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_34780 argD_2; acetylornithine/acetyl-lysine aminotransferase K09251 patA; putrescine aminotransferase [EC:2.6.1.82] D skT53_26930 hydroxyglutarate oxidase K15736 lhgO; (S)-2-hydroxyglutarate dehydrogenase [EC:1.1.5.13] D skT53_18250 hypothetical protein K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9] D skT53_05200 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_21090 dhaS; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_35360 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00220 Arginine biosynthesis [PATH:eff00220] D skT53_28930 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D skT53_28940 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D skT53_28950 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D skT53_22780 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1] D skT53_01910 ureC2; urease subunit alpha 2 K01428 ureC; urease subunit alpha [EC:3.5.1.5] D skT53_01900 ureA; urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5] D skT53_21390 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D skT53_07000 hypothetical protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D skT53_07010 hypothetical protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D skT53_07030 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D skT53_10240 pyrAB; carbamoyl-phosphate synthase pyrimidine-specific large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D skT53_28920 carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D skT53_10250 carA_1; carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D skT53_28910 carA_2; carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D skT53_03400 gudB; cryptic catabolic NAD-specific glutamate dehydrogenase GudB K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D skT53_26140 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D skT53_28870 acetyltransferase K00619 argA; amino-acid N-acetyltransferase [EC:2.3.1.1] D skT53_28830 argJ; bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] D skT53_28840 acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D skT53_28820 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D skT53_28850 argD_1; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] C 00330 Arginine and proline metabolism [PATH:eff00330] D skT53_15170 cad; arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19] D skT53_26170 speB; agmatinase K01480 speB; agmatinase [EC:3.5.3.11] D skT53_26160 speE; polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16] D skT53_15830 speH2; S-adenosylmethionine decarboxylase proenzyme 2 K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D skT53_30550 speD; S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D skT53_34780 argD_2; acetylornithine/acetyl-lysine aminotransferase K09251 patA; putrescine aminotransferase [EC:2.6.1.82] D skT53_05200 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_21090 dhaS; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_35360 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_09500 amiE_1; aliphatic amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D skT53_19180 hypothetical protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D skT53_31940 amiE_2; aliphatic amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D skT53_22780 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1] D skT53_19980 hypothetical protein K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13] D skT53_17340 proH; pyrroline-5-carboxylate reductase 1 K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D skT53_16290 hypothetical protein K00318 PRODH; proline dehydrogenase [EC:1.5.5.2] D skT53_16280 rocA; 1-pyrroline-5-carboxylate dehydrogenase K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88] D skT53_17360 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D skT53_17350 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D skT53_26140 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D skT53_13920 prdB; D-proline reductase (dithiol) protein PrdB K10794 prdB; D-proline reductase (dithiol) PrdB [EC:1.21.4.1] C 00340 Histidine metabolism [PATH:eff00340] D skT53_29180 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D skT53_29170 hisZ; ATP phosphoribosyltransferase regulatory subunit K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit D skT53_29240 hisI; histidine biosynthesis bifunctional protein HisIE K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31] D skT53_29220 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D skT53_29210 hisH; imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D skT53_29230 hisF; imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D skT53_29200 hisB; imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D skT53_34570 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D skT53_29190 histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D skT53_05200 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_21090 dhaS; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_35360 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00350 Tyrosine metabolism [PATH:eff00350] D skT53_26140 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D skT53_34570 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D skT53_22390 adhB; putative zinc-type alcohol dehydrogenase-like protein AdhB K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D skT53_34180 adhA; zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D skT53_05560 yoaI; putative 4-hydroxyphenylacetate 3-monooxygenase K00483 hpaB; 4-hydroxyphenylacetate 3-monooxygenase [EC:1.14.14.9] D skT53_06260 hypothetical protein K16902 E1.5.1.45; FAD reductase [NAD(P)H] [EC:1.5.1.45] D skT53_33690 hpcB; 3,4-dihydroxyphenylacetate 2,3-dioxygenase K00455 hpaD; 3,4-dihydroxyphenylacetate 2,3-dioxygenase [EC:1.13.11.15] D skT53_05550 aldehyde dehydrogenase K00151 hpaE; 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase [EC:1.2.1.60] D skT53_05540 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase K05921 hpaG; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-] D skT53_04650 hpaI; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52] C 00360 Phenylalanine metabolism [PATH:eff00360] D skT53_16400 enoyl-CoA hydratase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18] D skT53_29610 enoyl-CoA hydratase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18] D skT53_18060 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D skT53_18270 hypothetical protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D skT53_18310 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D skT53_26220 hbd; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D skT53_26140 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D skT53_34570 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D skT53_09500 amiE_1; aliphatic amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D skT53_19180 hypothetical protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D skT53_31940 amiE_2; aliphatic amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D skT53_33750 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] D skT53_33770 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] C 00380 Tryptophan metabolism [PATH:eff00380] D skT53_12710 cyclase K07130 kynB; arylformamidase [EC:3.5.1.9] D skT53_30710 cyclase K07130 kynB; arylformamidase [EC:3.5.1.9] D skT53_06260 hypothetical protein K16902 E1.5.1.45; FAD reductase [NAD(P)H] [EC:1.5.1.45] D skT53_33870 amidohydrolase K03392 ACMSD; aminocarboxymuconate-semialdehyde decarboxylase [EC:4.1.1.45] D skT53_33740 aldehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85] D skT53_00820 pdhD; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D skT53_04560 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D skT53_04310 thl_1; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_11210 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_12300 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_18240 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_26210 mmgA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_27020 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_29940 thl_2; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_05200 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_21090 dhaS; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_35360 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_09500 amiE_1; aliphatic amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D skT53_19180 hypothetical protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D skT53_31940 amiE_2; aliphatic amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:eff00400] D skT53_19660 3-deoxy-7-phosphoheptulonate synthase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D skT53_34580 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase K13853 aroG; 3-deoxy-7-phosphoheptulonate synthase / chorismate mutase [EC:2.5.1.54 5.4.99.5] D skT53_03820 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D skT53_09200 aroQ; 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D skT53_35420 aroE; shikimate dehydrogenase (NADP(+)) K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D skT53_09540 aroK; shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D skT53_03900 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D skT53_03810 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D skT53_11790 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D skT53_11800 glutamine amidotransferase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D skT53_01790 trpD_1; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D skT53_03840 trpD_2; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D skT53_03860 trpF; N-(5'-phosphoribosyl)anthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D skT53_03850 trpC; indole-3-glycerol-phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D skT53_03880 trpA; tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D skT53_03870 trpB; tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D skT53_03830 aroH; chorismate mutase AroH K06208 aroH; chorismate mutase [EC:5.4.99.5] D skT53_09340 hypothetical protein K06209 pheB; chorismate mutase [EC:5.4.99.5] D skT53_03890 tyrA; prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D skT53_30940 chorismate mutase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51] D skT53_26140 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D skT53_34570 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:eff00410] D skT53_04110 panD_1; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D skT53_17210 panD_2; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D skT53_05200 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_21090 dhaS; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_35360 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_04100 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D skT53_07750 hypothetical protein K01431 UPB1; beta-ureidopropionase [EC:3.5.1.6] D skT53_04330 acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D skT53_26240 acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] C 00430 Taurine and hypotaurine metabolism [PATH:eff00430] D skT53_25960 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D skT53_08120 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D skT53_03400 gudB; cryptic catabolic NAD-specific glutamate dehydrogenase GudB K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] C 00440 Phosphonate and phosphinate metabolism [PATH:eff00440] D skT53_29670 hypothetical protein K01841 pepM; phosphoenolpyruvate phosphomutase [EC:5.4.2.9] D skT53_29660 thiamine pyrophosphate enzyme K09459 E4.1.1.82; phosphonopyruvate decarboxylase [EC:4.1.1.82] D skT53_29650 hypothetical protein K03430 phnW; 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37] D skT53_05400 hypothetical protein K06164 phnI; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI [EC:2.7.8.37] D skT53_05420 hypothetical protein K06163 phnJ; alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase [EC:4.7.1.1] D skT53_05480 hypothetical protein K20859 phnPP; phosphoribosyl 1,2-cyclic phosphate 1,2-diphosphodiesterase [EC:3.1.4.57] C 00450 Selenocompound metabolism [PATH:eff00450] D skT53_03380 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D skT53_03390 metC-2; cystathionine gamma-synthase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D skT53_18640 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D skT53_20440 sufS; cysteine desulfurase SufS K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D skT53_14150 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D skT53_29270 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D skT53_32970 hypothetical protein K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D skT53_34430 hypothetical protein K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D skT53_22750 sat_1; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D skT53_34290 sat_2; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D skT53_13450 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D skT53_13460 selA; L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D skT53_24160 metS; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:eff00460] D skT53_25960 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D skT53_03410 ansA; L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D skT53_26540 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D skT53_00270 acetamidase K01455 E3.5.1.49; formamidase [EC:3.5.1.49] D skT53_09490 fmdA; formamidase K01455 E3.5.1.49; formamidase [EC:3.5.1.49] C 00470 D-Amino acid metabolism [PATH:eff00470] D skT53_22020 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D skT53_35600 ddlB; D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D skT53_21390 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D skT53_34960 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D skT53_10600 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D skT53_26840 dipeptide epimerase K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25] D skT53_15220 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D skT53_07920 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D skT53_13920 prdB; D-proline reductase (dithiol) protein PrdB K10794 prdB; D-proline reductase (dithiol) PrdB [EC:1.21.4.1] C 00480 Glutathione metabolism [PATH:eff00480] D skT53_25960 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D skT53_12180 ycsF; UPF0271 protein YcsF K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9] D skT53_34590 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D skT53_30110 icd; isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D skT53_30690 6-phosphogluconate dehydrogenase (decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D skT53_30670 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D skT53_26160 speE; polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis [PATH:eff00540] D skT53_34050 histidinol phosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:eff00541] D skT53_28160 gtaB; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D skT53_27920 UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D skT53_29110 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D skT53_27790 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D skT53_28070 hypothetical protein K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D skT53_27800 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D skT53_28090 hypothetical protein K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D skT53_27830 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D skT53_27810 NAD(P)-dependent oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D skT53_28150 rffA; dTDP-4-amino-4,6-dideoxygalactose transaminase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59] D skT53_06620 manA; mannose-6-phosphate isomerase ManA K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D skT53_21010 manC; mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D skT53_28640 perosamine synthetase K13010 per; perosamine synthetase [EC:2.6.1.102] D skT53_23980 glmU; bifunctional protein GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D skT53_27010 UDP-N-acetyl glucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] C 00550 Peptidoglycan biosynthesis [PATH:eff00550] D skT53_10560 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D skT53_27250 murA1; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D skT53_10570 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D skT53_00500 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D skT53_15600 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D skT53_10600 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D skT53_10630 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D skT53_35600 ddlB; D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D skT53_10620 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D skT53_02810 uppS; isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D skT53_05510 uppP1; undecaprenyl-diphosphatase 1 K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D skT53_20060 uppP2; undecaprenyl-diphosphatase 2 K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D skT53_27560 bcrC; undecaprenyl-diphosphatase BcrC K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D skT53_28300 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D skT53_34850 phosphatidylglycerophosphatase B K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D skT53_10610 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D skT53_10580 murG1; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase 1 K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D skT53_03260 hypothetical protein K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4] D skT53_26150 penicillin-binding protein 2D K21464 pbpG; penicillin-binding protein 2D [EC:2.4.99.28 3.4.16.4] D skT53_00610 mrdA_1; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D skT53_10640 spoVD; stage V sporulation protein D K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein) D skT53_07730 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D skT53_07910 serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D skT53_08030 dacF_1; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D skT53_24450 dacF_2; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D skT53_33210 yodJ; putative carboxypeptidase YodJ K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D skT53_11760 UDP-N-acetylmuramyl peptide synthase K23393 murT; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13] D skT53_11750 glutamine amidotransferase K07009 gatD; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13] C 00552 Teichoic acid biosynthesis [PATH:eff00552] D skT53_05510 uppP1; undecaprenyl-diphosphatase 1 K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D skT53_20060 uppP2; undecaprenyl-diphosphatase 2 K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D skT53_27560 bcrC; undecaprenyl-diphosphatase BcrC K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D skT53_28300 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D skT53_34850 phosphatidylglycerophosphatase B K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D skT53_28250 acetylglucosaminyldiphosphoundecaprenol acetyl-beta-D-mannosaminyltransferase K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] D skT53_06200 cell envelope-related transcriptional attenuator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-] D skT53_11770 hypothetical protein K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-] D skT53_16210 hypothetical protein K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-] D skT53_28240 hypothetical protein K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-] D skT53_27660 ugtP; processive diacylglycerol beta-glucosyltransferase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315] D skT53_27670 hypothetical protein K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:eff00543] D skT53_06590 hypothetical protein K20999 pslF; polysaccharide biosynthesis protein PslF D skT53_15980 hypothetical protein K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-] D skT53_23460 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D skT53_32060 hypothetical protein K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:eff00730] D skT53_21270 thiC; phosphomethylpyrimidine synthase K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D skT53_19350 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D skT53_12870 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D skT53_13230 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D skT53_34310 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D skT53_14090 thiO; glycine oxidase K03153 thiO; glycine oxidase [EC:1.4.3.19] D skT53_08930 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D skT53_07590 thiG; thiazole synthase K03149 thiG; thiazole synthase [EC:2.8.1.10] D skT53_07610 thiE_1; thiamine-phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D skT53_21780 thiL; thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D skT53_01140 rsgA; putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D skT53_23030 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:eff00740] D skT53_05950 hypothetical protein K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D skT53_07880 ribBA; riboflavin biosynthesis protein RibBA K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D skT53_07900 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D skT53_19800 hydrolase K21064 ycsE; 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.104] D skT53_07870 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D skT53_07890 riboflavin synthase subunit alpha K00793 ribE; riboflavin synthase [EC:2.5.1.9] D skT53_02950 riboflavin biosynthesis protein K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D skT53_30580 nitroreductase K04719 bluB; 5,6-dimethylbenzimidazole synthase [EC:1.13.11.79] D skT53_06260 hypothetical protein K16902 E1.5.1.45; FAD reductase [NAD(P)H] [EC:1.5.1.45] D skT53_08190 nudF; ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D skT53_32290 ubiX; flavin prenyltransferase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D skT53_33710 bsdB; putative UbiX-like flavin prenyltransferase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism [PATH:eff00750] D skT53_08170 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D skT53_09330 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D skT53_17220 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D skT53_22370 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D skT53_24440 pdxS; pyridoxal 5'-phosphate synthase subunit PdxS K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6] D skT53_24430 pdxT; pyridoxal 5'-phosphate synthase subunit PdxT K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6] C 00760 Nicotinate and nicotinamide metabolism [PATH:eff00760] D skT53_13240 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D skT53_13260 nadA; quinolinate synthase A K03517 nadA; quinolinate synthase [EC:2.5.1.72] D skT53_13250 nadC; nicotinate-nucleotide diphosphorylase (carboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D skT53_23710 nicotinate-nucleotide diphosphorylase (carboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D skT53_30300 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D skT53_08060 deoD; purine nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D skT53_14160 5'(3')-deoxyribonucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D skT53_19680 ser/threonine protein phosphatase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D skT53_35440 nicotinate-nicotinamide nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D skT53_31030 NAD(+) synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5] D skT53_07550 NAD-dependent deacylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D skT53_35280 NAD-dependent deacetylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D skT53_08910 nadK; NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D skT53_20680 maiA; maleate isomerase K01799 nicE; maleate isomerase [EC:5.2.1.1] D skT53_09660 mmsB; 3-hydroxyisobutyrate dehydrogenase K19647 hgd; 2-hydroxymethylglutarate dehydrogenase [EC:1.1.1.291] D skT53_13840 garR_1; 2-hydroxy-3-oxopropionate reductase K19647 hgd; 2-hydroxymethylglutarate dehydrogenase [EC:1.1.1.291] D skT53_09420 bcpA; carboxyvinyl-carboxyphosphonate phosphorylmutase K20454 dml; 2,3-dimethylmalate lyase [EC:4.1.3.32] C 00770 Pantothenate and CoA biosynthesis [PATH:eff00770] D skT53_18770 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D skT53_30960 ilvB; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D skT53_32140 hypothetical protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D skT53_30970 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D skT53_30980 ilvC2; ketol-acid reductoisomerase (NADP(+)) 2 K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D skT53_25820 ilvD_1; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D skT53_30900 ilvD_2; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D skT53_04090 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D skT53_10720 panE; 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D skT53_20950 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D skT53_04100 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D skT53_23700 coaX; type III pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33] D skT53_01060 coaBC; peptidase ClpP K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D skT53_01220 coaD; phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D skT53_30200 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D skT53_30400 acpS; holo-[acyl-carrier-protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D skT53_30950 ilvE; branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D skT53_07750 hypothetical protein K01431 UPB1; beta-ureidopropionase [EC:3.5.1.6] D skT53_04110 panD_1; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D skT53_17210 panD_2; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D skT53_05200 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_21090 dhaS; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_35360 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00780 Biotin metabolism [PATH:eff00780] D skT53_01390 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D skT53_01370 fabG_1; 3-oxoacyl-[acyl-carrier-protein] reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D skT53_04360 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D skT53_08680 short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D skT53_11150 fabG_2; beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D skT53_11440 beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D skT53_18460 fabG_3; 3-oxoacyl-[acyl-carrier-protein] reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D skT53_25630 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D skT53_32420 fabG_4; 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D skT53_27330 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D skT53_19890 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D skT53_19780 bioF; 8-amino-7-oxononanoate synthase 2 K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D skT53_19790 bioA; adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D skT53_19770 bioD; ATP-dependent dethiobiotin synthetase BioD K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D skT53_19760 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6] D skT53_04080 birA; bifunctional ligase/repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:eff00785] D skT53_08390 lipB; octanoyltransferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D skT53_03590 lipM; octanoyltransferase LipM K23734 lipM; lipoyl(octanoyl) transferase [EC:2.3.1.181] D skT53_08400 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D skT53_00820 pdhD; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D skT53_04560 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D skT53_00790 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D skT53_04530 pdhA; pyruvate dehydrogenase E1 component alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D skT53_00800 pdhB; pyruvate dehydrogenase E1 component subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D skT53_04540 2-oxoisovalerate dehydrogenase subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D skT53_04550 pdhC_2; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D skT53_00810 pdhC_1; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D skT53_09260 gcvPA; putative glycine dehydrogenase (decarboxylating) subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D skT53_09250 gcvPB; putative glycine dehydrogenase (decarboxylating) subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D skT53_09270 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D skT53_03580 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:eff00790] D skT53_00100 folE_1; GTP cyclohydrolase 1 K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D skT53_03270 folE_2; GTP cyclohydrolase 1 K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D skT53_23650 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D skT53_23640 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D skT53_23660 dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D skT53_00490 bifunctional folylpolyglutamate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D skT53_05950 hypothetical protein K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D skT53_07880 ribBA; riboflavin biosynthesis protein RibBA K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D skT53_15400 aminodeoxychorismate synthase, component I K03342 pabBC; para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38] D skT53_00110 6-pyruvoyltetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D skT53_15520 6-carboxytetrahydropterin synthase QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D skT53_15530 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D skT53_15540 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D skT53_15930 hypothetical protein K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D skT53_08480 moaA; GTP 3',8-cyclase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D skT53_08470 cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D skT53_08490 hypothetical protein K21142 moaX; MoaE-MoaD fusion protein [EC:2.8.1.12] D skT53_06960 moaB; molybdenum cofactor biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D skT53_13560 moeA2; LysR family transcriptional regulator K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D skT53_13570 molybdopterin molybdenumtransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D skT53_21640 moeA; molybdopterin molybdenumtransferase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D skT53_12370 molybdopterin-guanine dinucleotide biosynthesis protein A K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76] D skT53_13580 mobA; putative molybdenum cofactor guanylyltransferase K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:eff00670] D skT53_08990 folD; bifunctional protein FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D skT53_26540 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D skT53_21350 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D skT53_21340 purH; bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D skT53_01090 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D skT53_09270 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D skT53_18640 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D skT53_34810 hypothetical protein K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D skT53_21680 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:eff00860] D skT53_00310 hemA; glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D skT53_00370 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D skT53_13500 hemL1; glutamate-1-semialdehyde 2,1-aminomutase 1 K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D skT53_00360 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D skT53_00340 hemC; porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D skT53_18730 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D skT53_07430 hypothetical protein K00231 PPOX; protoporphyrinogen/coproporphyrinogen III oxidase [EC:1.3.3.4 1.3.3.15] D skT53_18710 hemY; protoporphyrinogen oxidase K00231 PPOX; protoporphyrinogen/coproporphyrinogen III oxidase [EC:1.3.3.4 1.3.3.15] D skT53_18720 hemH1; ferrochelatase 1 K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D skT53_18740 putative heme-dependent peroxidase K00435 hemQ; hydrogen peroxide-dependent heme synthase [EC:1.3.98.5] D skT53_00350 uroporphyrinogen III methyltransferase K13542 cobA-hemD; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75] D skT53_10800 hypothetical protein K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D skT53_34260 hypothetical protein K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D skT53_00330 siroheme synthase K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76] D skT53_07470 cbiX; sirohydrochlorin cobaltochelatase K03794 sirB; sirohydrochlorin ferrochelatase [EC:4.99.1.4] D skT53_01730 radical SAM protein K22227 ahbD; AdoMet-dependent heme synthase [EC:1.3.98.6] D skT53_18550 ctaB2; protoheme IX farnesyltransferase 2 K02257 COX10; heme o synthase [EC:2.5.1.141] D skT53_20530 ctaA; heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9] D skT53_10820 sirohydrochlorin cobaltochelatase K03795 cbiX; sirohydrochlorin cobaltochelatase [EC:4.99.1.3] D skT53_10860 cbiL; precorrin-2 C(20)-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151] D skT53_10810 hypothetical protein K21479 cbiH60; cobalt-factor III methyltransferase [EC:2.1.1.272] D skT53_10850 cbiF; cobalt-precorrin-4 C(11)-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271] D skT53_10840 cbiG; cobalamin biosynthesis protein K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12] D skT53_10900 precorrin-6A reductase K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106] D skT53_10880 cbiD; cobalt-precorrin-5B C(1)-methyltransferase K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195] D skT53_10870 cobL; precorrin-6Y methyltransferase K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196] D skT53_10890 cbiC; precorrin-8X methylmutase K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60] D skT53_10830 cbiA; cobyrinate a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11] D skT53_10910 yvqK_1; Cob(I)yrinic acid a,c-diamide adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D skT53_35490 yvqK_2; Cob(I)yrinic acid a,c-diamide adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D skT53_35480 cobQ; cobyric acid synthase K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10] D skT53_16160 cobD; cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D skT53_16170 adenosylcobinamide kinase/adenosylcobinamide phosphate guanyltransferase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] D skT53_16150 cobS; adenosylcobinamide-GDP ribazoletransferase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D skT53_16180 cobT; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] D skT53_16140 threonine-phosphate decarboxylase K04720 cobD; threonine-phosphate decarboxylase [EC:4.1.1.81] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:eff00130] D skT53_32290 ubiX; flavin prenyltransferase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D skT53_33710 bsdB; putative UbiX-like flavin prenyltransferase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D skT53_03700 menG_1; demethylmenaquinone methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D skT53_12920 isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2] D skT53_12930 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9] D skT53_12940 menH; putative 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase K08680 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20] D skT53_13010 menC; o-succinylbenzoate synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113] D skT53_12960 menE; 2-succinylbenzoate--CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26] D skT53_12950 menB; 1,4-dihydroxy-2-naphthoyl-CoA synthase K01661 menB; naphthoate synthase [EC:4.1.3.36] D skT53_11980 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D skT53_24490 hypothetical protein K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D skT53_22320 NAD(P)H dehydrogenase (quinone) K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D skT53_34030 hypothetical protein K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:eff00900] D skT53_08930 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D skT53_02830 dxr1; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D skT53_23480 ispDF; bifunctional enzyme IspD/IspF K12506 ispDF; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12] D skT53_24030 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D skT53_21480 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D skT53_17000 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D skT53_04310 thl_1; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_11210 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_12300 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_18240 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_26210 mmgA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_27020 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_29940 thl_2; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_11220 hypothetical protein K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D skT53_32290 ubiX; flavin prenyltransferase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D skT53_33710 bsdB; putative UbiX-like flavin prenyltransferase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D skT53_03500 fni; isopentenyl-diphosphate delta-isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] D skT53_08960 farnesyl-diphosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D skT53_03690 hypothetical protein K00805 hepS; heptaprenyl diphosphate synthase component 1 [EC:2.5.1.30] D skT53_03710 hepT; heptaprenyl diphosphate synthase component 2 K24873 hepT; heptaprenyl diphosphate synthase component 2 [EC:2.5.1.30] D skT53_02810 uppS; isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation D skT53_05200 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_21090 dhaS; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_35360 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00907 Pinene, camphor and geraniol degradation [PATH:eff00907] D skT53_35320 yngG; hydroxymethylglutaryl-CoA lyase YngG K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D skT53_15800 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D skT53_28800 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:eff00523] D skT53_27790 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D skT53_28070 hypothetical protein K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D skT53_27800 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D skT53_28090 hypothetical protein K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D skT53_27830 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D skT53_27810 NAD(P)-dependent oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides D skT53_12920 isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2] C 01055 Biosynthesis of vancomycin group antibiotics D skT53_27800 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D skT53_28090 hypothetical protein K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis [PATH:eff00332] D skT53_17360 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D skT53_17350 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:eff00261] D skT53_22750 sat_1; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D skT53_34290 sat_2; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D skT53_03070 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D skT53_34880 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D skT53_03060 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D skT53_03080 dapA_1; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D skT53_05530 dapA_2; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D skT53_25390 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D skT53_04060 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:eff00521] D skT53_06640 hypothetical protein K25026 glk; glucokinase [EC:2.7.1.2] D skT53_10320 pgcA; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D skT53_06610 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D skT53_17080 hisN; inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D skT53_27790 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D skT53_28070 hypothetical protein K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D skT53_27800 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D skT53_28090 hypothetical protein K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D skT53_27830 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D skT53_27810 NAD(P)-dependent oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D skT53_06640 hypothetical protein K25026 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis [PATH:eff00525] D skT53_27790 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D skT53_28070 hypothetical protein K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D skT53_27800 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D skT53_28090 hypothetical protein K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:eff00401] D skT53_03890 tyrA; prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D skT53_26140 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D skT53_34570 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis [PATH:eff00405] D skT53_16240 phenazine biosynthesis protein K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17] D skT53_11790 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D skT53_11800 glutamine amidotransferase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D skT53_01360 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D skT53_01370 fabG_1; 3-oxoacyl-[acyl-carrier-protein] reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D skT53_04360 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D skT53_08680 short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D skT53_11150 fabG_2; beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D skT53_11440 beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D skT53_18460 fabG_3; 3-oxoacyl-[acyl-carrier-protein] reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D skT53_25630 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D skT53_32420 fabG_4; 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D skT53_19890 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics [PATH:eff00998] D skT53_01380 acpA; acyl carrier protein K02078 acpP; acyl carrier protein D skT53_29670 hypothetical protein K01841 pepM; phosphoenolpyruvate phosphomutase [EC:5.4.2.9] D skT53_29660 thiamine pyrophosphate enzyme K09459 E4.1.1.82; phosphonopyruvate decarboxylase [EC:4.1.1.82] C 00999 Biosynthesis of various plant secondary metabolites [PATH:eff00999] D skT53_28260 metK; S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D skT53_35420 aroE; shikimate dehydrogenase (NADP(+)) K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:eff00362] D skT53_05890 non-heme bromoperoxidase BpoC K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24] D skT53_35210 3-oxoadipate enol-lactone hydrolase K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24] D skT53_18260 hypothetical protein K01031 pcaI; 3-oxoadipate CoA-transferase, alpha subunit [EC:2.8.3.6] D skT53_15800 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D skT53_01960 hypothetical protein K10621 cmtC; 2,3-dihydroxy-p-cumate/2,3-dihydroxybenzoate 3,4-dioxygenase [EC:1.13.11.- 1.13.11.14] D skT53_33750 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] D skT53_33770 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] D skT53_33740 aldehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85] D skT53_33790 hypothetical protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D skT53_33780 2-keto-4-pentenoate hydratase K01617 dmpH; 2-oxo-3-hexenedioate decarboxylase [EC:4.1.1.77] D skT53_09590 pcaC_1; 4-carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D skT53_13850 pcaC_2; 4-carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D skT53_22630 hypothetical protein K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D skT53_06090 menG_2; S-adenosylmethionine--2-demethylmenaquinone methyltransferase K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17] D skT53_32120 pobA; 4-hydroxybenzoate 3-monooxygenase K00481 pobA; p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2] D skT53_15810 enoyl-CoA hydratase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D skT53_18330 butyryl-CoA dehydrogenase K16173 acd; glutaryl-CoA dehydrogenase (non-decarboxylating) [EC:1.3.99.32] D skT53_18060 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D skT53_18270 hypothetical protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D skT53_18310 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D skT53_26220 hbd; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D skT53_04310 thl_1; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_11210 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_12300 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_18240 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_26210 mmgA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_27020 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_29940 thl_2; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation [PATH:eff00627] D skT53_09500 amiE_1; aliphatic amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D skT53_19180 hypothetical protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D skT53_31940 amiE_2; aliphatic amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D skT53_29830 mdlC; benzoylformate decarboxylase K01576 mdlC; benzoylformate decarboxylase [EC:4.1.1.7] D skT53_33700 hypothetical protein K01612 bsdC; vanillate/4-hydroxybenzoate decarboxylase subunit C [EC:4.1.1.- 4.1.1.61] D skT53_32290 ubiX; flavin prenyltransferase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D skT53_33710 bsdB; putative UbiX-like flavin prenyltransferase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D skT53_32150 yfmT; putative aldehyde dehydrogenase YfmT K21802 vdh; vanillin dehydrogenase [EC:1.2.1.67] D skT53_18250 hypothetical protein K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9] C 00364 Fluorobenzoate degradation [PATH:eff00364] D skT53_22190 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00625 Chloroalkane and chloroalkene degradation [PATH:eff00625] D skT53_34180 adhA; zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D skT53_22390 adhB; putative zinc-type alcohol dehydrogenase-like protein AdhB K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D skT53_05200 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_21090 dhaS; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_35360 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D skT53_10180 yycR; putative zinc-type alcohol dehydrogenase-like protein YycR K00148 fdhA; glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46] D skT53_00170 dhlB; haloacid dehalogenase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] D skT53_31820 haloacid dehalogenase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:eff00361] D skT53_22190 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D skT53_00170 dhlB; haloacid dehalogenase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] D skT53_31820 haloacid dehalogenase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] C 00623 Toluene degradation [PATH:eff00623] D skT53_22190 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00622 Xylene degradation [PATH:eff00622] D skT53_33740 aldehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85] D skT53_33790 hypothetical protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D skT53_33780 2-keto-4-pentenoate hydratase K01617 dmpH; 2-oxo-3-hexenedioate decarboxylase [EC:4.1.1.77] D skT53_01990 hypothetical protein K16303 cmtAc; p-cumate 2,3-dioxygenase subunit beta [EC:1.14.12.25] D skT53_02000 hypothetical protein K10620 cmtB; 2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase [EC:1.3.1.58] D skT53_01960 hypothetical protein K10621 cmtC; 2,3-dihydroxy-p-cumate/2,3-dihydroxybenzoate 3,4-dioxygenase [EC:1.13.11.- 1.13.11.14] D skT53_33750 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] D skT53_33770 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] C 00633 Nitrotoluene degradation [PATH:eff00633] D skT53_33150 hypothetical protein K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-] C 00642 Ethylbenzene degradation D skT53_15800 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00643 Styrene degradation [PATH:eff00643] D skT53_09500 amiE_1; aliphatic amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D skT53_19180 hypothetical protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D skT53_31940 amiE_2; aliphatic amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D skT53_06100 acyl CoA:acetate/3-ketoacid CoA transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1] D skT53_15040 propionate CoA-transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1] C 00791 Atrazine degradation D skT53_01910 ureC2; urease subunit alpha 2 K01428 ureC; urease subunit alpha [EC:3.5.1.5] D skT53_01900 ureA; urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5] C 00930 Caprolactam degradation D skT53_18300 acyl-CoA dehydrogenase K06446 DCAA; acyl-CoA dehydrogenase [EC:1.3.99.-] D skT53_18280 acyl-CoA dehydrogenase K06446 DCAA; acyl-CoA dehydrogenase [EC:1.3.99.-] C 00363 Bisphenol degradation C 00621 Dioxin degradation [PATH:eff00621] D skT53_33790 hypothetical protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D skT53_33780 2-keto-4-pentenoate hydratase K01617 dmpH; 2-oxo-3-hexenedioate decarboxylase [EC:4.1.1.77] D skT53_33750 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] D skT53_33770 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] C 00626 Naphthalene degradation [PATH:eff00626] D skT53_34180 adhA; zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D skT53_22390 adhB; putative zinc-type alcohol dehydrogenase-like protein AdhB K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation D skT53_12430 3-chlorobenzoate-3,4-dioxygenase oxygenase K18068 pht3; phthalate 4,5-dioxygenase [EC:1.14.12.7] D skT53_33890 ring-hydroxylating oxygenase subunit alpha K18068 pht3; phthalate 4,5-dioxygenase [EC:1.14.12.7] C 00365 Furfural degradation [PATH:eff00365] D skT53_32330 hypothetical protein K16874 hmfF; 2,5-furandicarboxylate decarboxylase 1 D skT53_32190 4-chlorobenzoate--CoA ligase K16876 hmfD; 2-furoate---CoA ligase [EC:6.2.1.31] D skT53_32260 4-chlorobenzoate--CoA ligase K16876 hmfD; 2-furoate---CoA ligase [EC:6.2.1.31] D skT53_32220 cutL; carbon monoxide dehydrogenase K16877 hmfA; 2-furoyl-CoA dehydrogenase large subunit [EC:1.3.99.8] D skT53_32240 molybdopterin dehydrogenase K16878 hmfB; 2-furoyl-CoA dehydrogenase FAD binding subunit [EC:1.3.99.8] D skT53_32270 crotonase K16880 hmfE; 2-oxoglutaroyl-CoA hydrolase C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:eff03020] D skT53_23320 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D skT53_23310 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D skT53_22960 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D skT53_01050 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D skT53_26260 hypothetical protein K03048 rpoE; DNA-directed RNA polymerase subunit delta C 03022 Basal transcription factors D skT53_03920 DEAD/DEAH box helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:eff03010] D skT53_03490 ypfD; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D skT53_02770 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D skT53_23180 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D skT53_22970 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D skT53_23070 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D skT53_17670 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D skT53_23280 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D skT53_23100 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D skT53_22920 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D skT53_23250 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D skT53_22980 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D skT53_23290 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D skT53_22990 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D skT53_23110 rpsZ; 30S ribosomal protein S14 type Z K02954 RP-S14; small subunit ribosomal protein S14 D skT53_02980 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D skT53_01490 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D skT53_23150 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D skT53_17680 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D skT53_23200 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D skT53_35800 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D skT53_12130 hypothetical protein K02970 RP-S21; small subunit ribosomal protein S21 D skT53_23360 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D skT53_23210 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D skT53_23240 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D skT53_23230 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D skT53_23120 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D skT53_23090 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D skT53_23340 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D skT53_25040 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D skT53_23350 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D skT53_23370 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D skT53_22930 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D skT53_23140 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D skT53_23050 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D skT53_23170 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D skT53_22950 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D skT53_23080 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D skT53_02130 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D skT53_17710 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D skT53_10120 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D skT53_23190 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D skT53_23220 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D skT53_23130 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D skT53_23960 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D skT53_10100 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D skT53_01160 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D skT53_23160 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D skT53_23060 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D skT53_26400 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D skT53_01270 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D skT53_23400 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D skT53_24570 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D skT53_17700 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D skT53_23300 50S ribosomal protein L7ae K07590 RP-L7A; large subunit ribosomal protein L7A D skT53_r00020 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D skT53_r00170 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D skT53_r00030 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:eff00970] D skT53_t00250 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D skT53_t00460 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D skT53_t00520 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D skT53_t00720 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D skT53_t00260 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D skT53_t00470 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D skT53_t00620 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D skT53_t00770 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D skT53_t00010 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D skT53_t00140 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D skT53_t00240 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D skT53_t00450 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D skT53_t00160 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D skT53_t00190 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D skT53_t00400 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D skT53_t00120 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D skT53_t00830 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D skT53_t00350 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D skT53_t00580 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D skT53_t00710 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D skT53_t00800 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D skT53_t00220 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D skT53_t00430 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D skT53_t00610 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D skT53_t00130 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D skT53_t00280 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D skT53_t00490 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D skT53_t00630 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D skT53_t00700 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D skT53_t00300 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D skT53_t00670 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D skT53_t00050 tRNA-His K14226 tRNA-His; tRNA His D skT53_t00110 tRNA-His K14226 tRNA-His; tRNA His D skT53_t00590 tRNA-His K14226 tRNA-His; tRNA His D skT53_t00530 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D skT53_t00540 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D skT53_t00730 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D skT53_t00330 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D skT53_t00560 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D skT53_t00340 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D skT53_t00570 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D skT53_t00080 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D skT53_t00060 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D skT53_t00290 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D skT53_t00500 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D skT53_t00640 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D skT53_t00790 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D skT53_t00200 tRNA-Met K14230 tRNA-Met; tRNA Met D skT53_t00410 tRNA-Met K14230 tRNA-Met; tRNA Met D skT53_t00690 tRNA-Met K14230 tRNA-Met; tRNA Met D skT53_t00390 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D skT53_t00810 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D skT53_t00070 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D skT53_t00750 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D skT53_t00170 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D skT53_t00780 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D skT53_t00310 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D skT53_t00380 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D skT53_t00230 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D skT53_t00440 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D skT53_t00740 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D skT53_t00020 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D skT53_t00100 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D skT53_t00040 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D skT53_t00370 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D skT53_t00850 tRNA-Val K14237 tRNA-Val; tRNA Val D skT53_t00090 tRNA-Val K14237 tRNA-Val; tRNA Val D skT53_t00150 tRNA-Val K14237 tRNA-Val; tRNA Val D skT53_t00210 tRNA-Val K14237 tRNA-Val; tRNA Val D skT53_t00420 tRNA-Val K14237 tRNA-Val; tRNA Val D skT53_t00510 tRNA-Sec K14238 tRNA-Sec; tRNA Sec D skT53_23470 gltX; glutamate--tRNA ligase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D skT53_07740 amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D skT53_20930 gatA; glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D skT53_25930 amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D skT53_20920 gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D skT53_20940 hypothetical protein K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D skT53_25540 glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D skT53_21940 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D skT53_13140 aspS; aspartate--tRNA(Asp/Asn) ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D skT53_11970 glyQS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D skT53_30740 thrS; threonine--tRNA ligase 1 K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D skT53_24420 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D skT53_13460 selA; L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D skT53_23450 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D skT53_24160 metS; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D skT53_01090 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D skT53_00480 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D skT53_35520 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D skT53_10390 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D skT53_23590 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D skT53_21250 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D skT53_02840 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D skT53_13150 hisS2; histidine--tRNA ligase 2 K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D skT53_30790 pheS; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D skT53_30800 pheT; phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D skT53_30860 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D skT53_34230 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:eff03060] D skT53_23040 secY; protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D skT53_23390 hypothetical protein K03073 secE; preprotein translocase subunit SecE D skT53_19250 hypothetical protein K03075 secG; preprotein translocase subunit SecG D skT53_31190 hypothetical protein K03072 secD; preprotein translocase subunit SecD D skT53_31200 hypothetical protein K03074 secF; preprotein translocase subunit SecF D skT53_31140 hypothetical protein K03210 yajC; preprotein translocase subunit YajC D skT53_24600 spoIIIJ; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D skT53_28760 hypothetical protein K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D skT53_01480 ftsY_2; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D skT53_01460 ftsY_1; signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor D skT53_13650 hypothetical protein K03116 tatA; sec-independent protein translocase protein TatA D skT53_33590 hypothetical protein K03116 tatA; sec-independent protein translocase protein TatA D skT53_06150 tatC; sec-independent protein translocase protein TatC K03118 tatC; sec-independent protein translocase protein TatC D skT53_21620 tatC1; Sec-independent protein translocase protein TatCd K03118 tatC; sec-independent protein translocase protein TatC D skT53_02140 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D skT53_19810 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D skT53_10310 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:eff04122] D skT53_12870 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D skT53_13230 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D skT53_34310 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D skT53_26010 thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D skT53_01560 hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D skT53_32680 hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D skT53_13060 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D skT53_08480 moaA; GTP 3',8-cyclase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D skT53_22070 hypothetical protein K03636 moaD; sulfur-carrier protein D skT53_08490 hypothetical protein K21142 moaX; MoaE-MoaD fusion protein [EC:2.8.1.12] D skT53_08500 moeB; thiamine/molybdopterin biosynthesis protein MoeB K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D skT53_08470 cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D skT53_06960 moaB; molybdenum cofactor biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D skT53_07600 thiS; thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein D skT53_09890 hypothetical protein K21140 mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6] C 03050 Proteasome C 03018 RNA degradation [PATH:eff03018] D skT53_19260 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D skT53_02990 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D skT53_19230 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D skT53_07330 RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D skT53_24860 cshA; DEAD-box ATP-dependent RNA helicase CshA K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D skT53_26370 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D skT53_07300 rny; ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-] D skT53_03090 rnj; ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-] D skT53_30070 pfkA; ATP-dependent 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D skT53_35900 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D skT53_21590 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D skT53_07100 RNA-binding protein Hfq K03666 hfq; host factor-I protein B B 09124 Replication and repair C 03030 DNA replication [PATH:eff03030] D skT53_02100 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D skT53_14940 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D skT53_30010 DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D skT53_02860 polC; DNA polymerase III PolC-type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D skT53_24320 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D skT53_24220 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D skT53_35780 yqeN; hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D skT53_24550 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D skT53_25060 dnaC; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D skT53_11920 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D skT53_24910 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D skT53_19590 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D skT53_02180 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D skT53_30170 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D skT53_21140 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:eff03410] D skT53_03200 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D skT53_25610 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D skT53_19960 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D skT53_30180 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D skT53_07510 alkA; DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D skT53_19740 hypothetical protein K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] D skT53_22260 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D skT53_19200 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D skT53_13660 nfo; putative endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D skT53_30170 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D skT53_31210 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D skT53_21140 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:eff03420] D skT53_23920 mfd; transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D skT53_29050 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A D skT53_29040 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B D skT53_34860 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C D skT53_02110 pcrA_1; DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D skT53_03320 yjcD; putative ATP-dependent DNA helicase YjcD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D skT53_21150 pcrA_2; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D skT53_30170 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D skT53_21140 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D skT53_03920 DEAD/DEAH box helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] C 03430 Mismatch repair [PATH:eff03430] D skT53_07140 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D skT53_30840 mutSB; endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D skT53_07130 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D skT53_02110 pcrA_1; DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D skT53_03320 yjcD; putative ATP-dependent DNA helicase YjcD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D skT53_21150 pcrA_2; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D skT53_08980 xseA; exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D skT53_08970 xseB; exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D skT53_31210 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D skT53_24910 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D skT53_30010 DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D skT53_02860 polC; DNA polymerase III PolC-type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D skT53_24550 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D skT53_24320 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D skT53_35780 yqeN; hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D skT53_24220 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D skT53_02100 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D skT53_14940 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D skT53_21140 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:eff03440] D skT53_31210 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D skT53_24910 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D skT53_24530 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D skT53_11990 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D skT53_24300 recR; recombination protein RecR K06187 recR; recombination protein RecR D skT53_07320 recA; protein RecA K03553 recA; recombination protein RecA D skT53_30170 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D skT53_31070 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D skT53_31080 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D skT53_31060 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D skT53_01190 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D skT53_30010 DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D skT53_02860 polC; DNA polymerase III PolC-type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D skT53_24550 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D skT53_24320 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D skT53_35780 yqeN; hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D skT53_24220 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D skT53_02100 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D skT53_14940 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D skT53_01070 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining [PATH:eff03450] D skT53_31320 ku; non-homologous end joining protein Ku K10979 ku; DNA end-binding protein Ku D skT53_04160 DNA polymerase domain-containing protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D skT53_31700 DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:eff02010] D skT53_21050 tungsten ABC transporter substrate-binding protein K05772 tupA; tungstate transport system substrate-binding protein D skT53_21060 ABC transporter permease K05773 tupB; tungstate transport system permease protein D skT53_21070 hypothetical protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D skT53_12360 molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein D skT53_26390 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein D skT53_12350 yvgM; putative molybdenum transport system permease protein YvgM K02018 modB; molybdate transport system permease protein D skT53_31350 molybdenum ABC transporter permease K02018 modB; molybdate transport system permease protein D skT53_28350 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D skT53_28360 yqgH; putative ABC transporter permease protein YqgH K02037 pstC; phosphate transport system permease protein D skT53_28370 phosphate transport system permease protein PstA K02038 pstA; phosphate transport system permease protein D skT53_28380 pstB; phosphate import ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D skT53_29700 hypothetical protein K02044 phnD; phosphonate transport system substrate-binding protein D skT53_29710 phnE; phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein D skT53_29720 phnC; phosphonates import ATP-binding protein PhnC K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D skT53_11420 glnH; glutamine ABC transporter substrate-binding protein K10039 peb1A; aspartate/glutamate/glutamine transport system substrate-binding protein D skT53_11400 glutamine ABC transporter permease K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein D skT53_11410 glnP; glutamine ABC transporter permease K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein D skT53_11430 amino acid ABC transporter ATP-binding protein K10041 peb1C; aspartate/glutamate/glutamine transport system ATP-binding protein [EC:7.4.2.1] D skT53_04440 branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D skT53_04670 branched chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D skT53_05580 hypothetical protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D skT53_05650 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D skT53_06020 livJ; branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D skT53_10090 amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D skT53_12650 amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D skT53_15720 ethanolamine utilization protein EutJ K01999 livK; branched-chain amino acid transport system substrate-binding protein D skT53_31970 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D skT53_04400 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D skT53_04680 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D skT53_05660 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D skT53_05680 hypothetical protein K01997 livH; branched-chain amino acid transport system permease protein D skT53_06030 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D skT53_10080 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D skT53_12640 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D skT53_15760 livH; branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D skT53_31980 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D skT53_04410 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D skT53_04690 metal-dependent hydrolase K01995 livG; branched-chain amino acid transport system ATP-binding protein D skT53_06040 metal-dependent hydrolase K01995 livG; branched-chain amino acid transport system ATP-binding protein D skT53_10070 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D skT53_12630 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D skT53_15750 ABC transporter K01998 livM; branched-chain amino acid transport system permease protein D skT53_31990 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D skT53_04420 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D skT53_05690 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D skT53_10060 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D skT53_12620 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D skT53_15740 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D skT53_32000 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D skT53_04430 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D skT53_04700 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D skT53_05600 livF; ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D skT53_05700 hypothetical protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D skT53_06050 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D skT53_10050 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D skT53_12610 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D skT53_15730 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D skT53_32010 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D skT53_05160 sfbA; metal ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D skT53_29490 TonB-dependent receptor K02073 metQ; D-methionine transport system substrate-binding protein D skT53_05150 sfbC; ABC transporter permease K02072 metI; D-methionine transport system permease protein D skT53_29480 D-methionine ABC transporter K02072 metI; D-methionine transport system permease protein D skT53_05140 methionine import ATP-binding protein MetN K02071 metN; D-methionine transport system ATP-binding protein D skT53_29470 metN; methionine import ATP-binding protein MetN K02071 metN; D-methionine transport system ATP-binding protein D skT53_09770 ABC transporter substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein D skT53_09750 zurM; metal ABC transporter permease K09816 znuB; zinc transport system permease protein D skT53_09760 zinc ABC transporter ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D skT53_01870 hypothetical protein K02009 cbiN; cobalt/nickel transport protein D skT53_01860 cobalamin biosynthesis protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein D skT53_01880 hypothetical protein K02008 cbiQ; cobalt/nickel transport system permease protein D skT53_01890 cobalt ABC transporter ATP-binding protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein D skT53_17660 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component D skT53_17650 ecfA; energy-coupling factor transporter ATP-binding protein EcfA K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D skT53_27710 transport permease protein K09690 wzm; homopolymeric O-antigen transport system permease protein D skT53_27720 ABC transporter K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D skT53_28990 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein D skT53_28980 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D skT53_25730 multidrug ABC transporter permease/ATP-binding protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump D skT53_25740 multidrug ABC transporter ATP-binding protein K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump C 02060 Phosphotransferase system (PTS) [PATH:eff02060] D skT53_00380 ptsI; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] C 03070 Bacterial secretion system [PATH:eff03070] D skT53_09860 hypothetical protein K02455 gspF; general secretion pathway protein F D skT53_31190 hypothetical protein K03072 secD; preprotein translocase subunit SecD D skT53_31200 hypothetical protein K03074 secF; preprotein translocase subunit SecF D skT53_23390 hypothetical protein K03073 secE; preprotein translocase subunit SecE D skT53_19250 hypothetical protein K03075 secG; preprotein translocase subunit SecG D skT53_23040 secY; protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D skT53_31140 hypothetical protein K03210 yajC; preprotein translocase subunit YajC D skT53_24600 spoIIIJ; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D skT53_28760 hypothetical protein K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D skT53_01460 ftsY_1; signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor D skT53_01480 ftsY_2; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D skT53_13650 hypothetical protein K03116 tatA; sec-independent protein translocase protein TatA D skT53_33590 hypothetical protein K03116 tatA; sec-independent protein translocase protein TatA D skT53_06150 tatC; sec-independent protein translocase protein TatC K03118 tatC; sec-independent protein translocase protein TatC D skT53_21620 tatC1; Sec-independent protein translocase protein TatCd K03118 tatC; sec-independent protein translocase protein TatC B B 09132 Signal transduction C 02020 Two-component system [PATH:eff02020] D skT53_20620 hypothetical protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D skT53_28430 phoR; PAS domain-containing sensor histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D skT53_22720 DNA-binding response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D skT53_28420 phoP; DNA-binding response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D skT53_28350 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D skT53_25160 2-alkenal reductase K04771 degP; serine protease Do [EC:3.4.21.107] D skT53_28540 flagellin K02406 fliC; flagellin D skT53_02720 RNA polymerase sigma factor K02405 fliA; RNA polymerase sigma factor FliA D skT53_29020 motility protein A K02556 motA; chemotaxis protein MotA D skT53_29890 flagellar motor protein MotA K02556 motA; chemotaxis protein MotA D skT53_26870 hypothetical protein K07793 tctA; putative tricarboxylic transport membrane protein D skT53_26860 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D skT53_26850 hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein D skT53_07650 resE; sensor histidine kinase K07651 resE; two-component system, OmpR family, sensor histidine kinase ResE [EC:2.7.13.3] D skT53_07660 resD_1; DNA-binding response regulator K07775 resD; two-component system, OmpR family, response regulator ResD D skT53_33400 DNA-binding response regulator K07775 resD; two-component system, OmpR family, response regulator ResD D skT53_20530 ctaA; heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9] D skT53_25120 PAS domain-containing sensor histidine kinase K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3] D skT53_25110 DNA-binding response regulator K07668 vicR; two-component system, OmpR family, response regulator VicR D skT53_24560 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D skT53_01440 two-component sensor histidine kinase K14982 ciaH; two-component system, OmpR family, sensor histidine kinase CiaH [EC:2.7.13.3] D skT53_01430 llrF; DNA-binding response regulator K14983 ciaR; two-component system, OmpR family, response regulator CiaR D skT53_33210 yodJ; putative carboxypeptidase YodJ K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D skT53_27610 lisK; two-component sensor histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3] D skT53_27620 lisR; DNA-binding response regulator K18941 arlR; two-component system, OmpR family, response regulator ArlR D skT53_21730 hypothetical protein K13533 kinE; two-component system, sporulation sensor kinase E [EC:2.7.13.3] D skT53_29860 hypothetical protein K13533 kinE; two-component system, sporulation sensor kinase E [EC:2.7.13.3] D skT53_26280 response regulator K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F D skT53_08870 spo0A; stage 0 sporulation protein A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A D skT53_13730 citrate lyase K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D skT53_13890 histidine kinase K11691 K11691; two-component system, CitB family, sensor histidine kinase DctS [EC:2.7.13.3] D skT53_13900 response regulator K11692 K11692; two-component system, CitB family, response regulator DctR D skT53_24260 malate oxidoreductase K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D skT53_30030 ytsJ; putative NAD-dependent malic enzyme 4 K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D skT53_22470 lytS; sensor protein LytS K07704 lytS; two-component system, LytTR family, sensor histidine kinase LytS [EC:2.7.13.3] D skT53_22480 DNA-binding response regulator K07705 lytT; two-component system, LytTR family, response regulator LytT D skT53_01680 hypothetical protein K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D skT53_01690 hypothetical protein K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D skT53_01700 narH; nitrate reductase beta chain K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D skT53_01720 nitrate reductase subunit gamma K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D skT53_01710 narJ; putative nitrate reductase molybdenum cofactor assembly chaperone NarJ K00373 narJ; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW D skT53_31790 hypothetical protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D skT53_28530 csrA; carbon storage regulator K03563 csrA; carbon storage regulator D skT53_28270 degS; signal transduction histidine-protein kinase/phosphatase DegS K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3] D skT53_28280 degU; transcriptional regulatory protein DegU K07692 degU; two-component system, NarL family, response regulator DegU D skT53_03650 liaH; protein LiaH K11620 liaH; lia operon protein LiaH D skT53_01740 histidine kinase K07683 nreB; two-component system, NarL family, sensor histidine kinase NreB [EC:2.7.13.3] D skT53_01750 DNA-binding response regulator K07696 nreC; two-component system, NarL family, response regulator NreC D skT53_18700 histidine kinase K10851 nreA; nitrogen regulatory protein A D skT53_16020 hypothetical protein K02651 flp; pilus assembly protein Flp/PilA D skT53_31540 hypothetical protein K02651 flp; pilus assembly protein Flp/PilA D skT53_16080 hypothetical protein K02279 cpaB; pilus assembly protein CpaB D skT53_31490 hypothetical protein K02279 cpaB; pilus assembly protein CpaB D skT53_16060 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D skT53_31510 secretory protein kinase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D skT53_16050 hypothetical protein K12510 tadB; tight adherence protein B D skT53_16040 hypothetical protein K12511 tadC; tight adherence protein C D skT53_31530 hypothetical protein K12511 tadC; tight adherence protein C D skT53_02040 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1 D skT53_18750 glnB; nitrogen regulatory protein P-II 1 K04751 glnB; nitrogen regulatory protein P-II 1 D skT53_07000 hypothetical protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D skT53_07010 hypothetical protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D skT53_07030 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D skT53_18250 hypothetical protein K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9] D skT53_10040 atoE; short-chain fatty acids transporter K02106 atoE; short-chain fatty acids transporter D skT53_04310 thl_1; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_11210 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_12300 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_18240 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_26210 mmgA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_27020 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_29940 thl_2; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_13910 dctA; C4-dicarboxylate transport protein K11103 dctA; aerobic C4-dicarboxylate transport protein D skT53_19320 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D skT53_03730 cheR; chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D skT53_00860 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D skT53_08510 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D skT53_14020 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D skT53_15330 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D skT53_18690 mcpA; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D skT53_20600 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D skT53_21820 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D skT53_25670 tlpC; methyl-accepting chemotaxis protein TlpC K03406 mcp; methyl-accepting chemotaxis protein D skT53_28340 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D skT53_29400 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D skT53_31300 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D skT53_33170 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D skT53_02680 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D skT53_17240 cheW1; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D skT53_02670 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D skT53_02570 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D skT53_21790 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D skT53_29100 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D skT53_02660 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D skT53_22710 response regulator K11443 divK; two-component system, cell cycle response regulator DivK D skT53_13720 C4-dicarboxylate ABC transporter K11688 dctP; C4-dicarboxylate-binding protein DctP D skT53_13810 C4-dicarboxylate ABC transporter K11688 dctP; C4-dicarboxylate-binding protein DctP D skT53_17500 C4-dicarboxylate ABC transporter K11688 dctP; C4-dicarboxylate-binding protein DctP D skT53_13870 TRAP transporter permease K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D skT53_17490 TRAP transporter permease K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D skT53_13860 C4-dicarboxylate ABC transporter permease K11690 dctM; C4-dicarboxylate transporter, DctM subunit D skT53_17480 C4-dicarboxylate ABC transporter permease K11690 dctM; C4-dicarboxylate transporter, DctM subunit D skT53_19050 C4-dicarboxylate ABC transporter permease K11690 dctM; C4-dicarboxylate transporter, DctM subunit D skT53_00670 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D skT53_11390 sensor histidine kinase K07717 glnK; two-component system, sensor histidine kinase GlnK [EC:2.7.13.3] D skT53_11380 transcriptional regulator K07719 glnL; two-component system, response regulator GlnL D skT53_05800 DNA-binding response regulator K07720 yesN; two-component system, response regulator YesN D skT53_32200 DNA-binding response regulator K07720 yesN; two-component system, response regulator YesN D skT53_34660 cytochrome c oxidase, cbb3-type subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D skT53_34650 hypothetical protein K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D skT53_20330 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D skT53_35150 ythA; putative cytochrome bd menaquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D skT53_09800 hypothetical protein K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D skT53_20320 cytochrome D ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D skT53_35140 ythB; putative cytochrome bd menaquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D skT53_17090 acid phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D skT53_27010 UDP-N-acetyl glucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D skT53_28470 hypothetical protein K02398 flgM; negative regulator of flagellin synthesis FlgM C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis D skT53_22780 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:eff02024] D skT53_07100 RNA-binding protein Hfq K03666 hfq; host factor-I protein D skT53_11790 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D skT53_11800 glutamine amidotransferase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D skT53_16240 phenazine biosynthesis protein K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17] D skT53_18040 hypothetical protein K20266 trbJ; type IV secretion system protein TrbJ D skT53_04440 branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D skT53_04670 branched chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D skT53_05580 hypothetical protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D skT53_05650 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D skT53_06020 livJ; branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D skT53_10090 amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D skT53_12650 amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D skT53_15720 ethanolamine utilization protein EutJ K01999 livK; branched-chain amino acid transport system substrate-binding protein D skT53_31970 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D skT53_04400 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D skT53_04680 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D skT53_05660 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D skT53_05680 hypothetical protein K01997 livH; branched-chain amino acid transport system permease protein D skT53_06030 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D skT53_10080 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D skT53_12640 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D skT53_15760 livH; branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D skT53_31980 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D skT53_04410 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D skT53_04690 metal-dependent hydrolase K01995 livG; branched-chain amino acid transport system ATP-binding protein D skT53_06040 metal-dependent hydrolase K01995 livG; branched-chain amino acid transport system ATP-binding protein D skT53_10070 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D skT53_12630 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D skT53_15750 ABC transporter K01998 livM; branched-chain amino acid transport system permease protein D skT53_31990 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D skT53_04420 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D skT53_05690 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D skT53_10060 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D skT53_12620 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D skT53_15740 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D skT53_32000 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D skT53_04430 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D skT53_04700 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D skT53_05600 livF; ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D skT53_05700 hypothetical protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D skT53_06050 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D skT53_10050 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D skT53_12610 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D skT53_15730 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D skT53_32010 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D skT53_05220 aiiB; N-acyl homoserine lactonase AiiB K13075 ahlD; N-acyl homoserine lactone hydrolase [EC:3.1.1.81] D skT53_05940 attM; N-acyl homoserine lactonase AttM K13075 ahlD; N-acyl homoserine lactone hydrolase [EC:3.1.1.81] D skT53_09640 MBL fold metallo-hydrolase K13075 ahlD; N-acyl homoserine lactone hydrolase [EC:3.1.1.81] D skT53_04380 lcfA_1; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_04720 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_05070 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_09440 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_13320 hypothetical protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_18290 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_19690 lcfA_2; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_29580 ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_00670 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D skT53_07900 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D skT53_01440 two-component sensor histidine kinase K14982 ciaH; two-component system, OmpR family, sensor histidine kinase CiaH [EC:2.7.13.3] D skT53_01430 llrF; DNA-binding response regulator K14983 ciaR; two-component system, OmpR family, response regulator CiaR D skT53_05030 peptide ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D skT53_05040 glutathione ABC transporter permease GsiD K02034 ABC.PE.P1; peptide/nickel transport system permease protein D skT53_05050 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D skT53_05060 ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D skT53_24600 spoIIIJ; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D skT53_23390 hypothetical protein K03073 secE; preprotein translocase subunit SecE D skT53_19250 hypothetical protein K03075 secG; preprotein translocase subunit SecG D skT53_23040 secY; protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D skT53_31140 hypothetical protein K03210 yajC; preprotein translocase subunit YajC D skT53_28760 hypothetical protein K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D skT53_01460 ftsY_1; signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor D skT53_01480 ftsY_2; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D skT53_28280 degU; transcriptional regulatory protein DegU K07692 degU; two-component system, NarL family, response regulator DegU D skT53_26280 response regulator K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F D skT53_08870 spo0A; stage 0 sporulation protein A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A D skT53_05500 hypothetical protein K01114 plc; phospholipase C [EC:3.1.4.3] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:eff02030] D skT53_00860 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D skT53_08510 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D skT53_14020 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D skT53_15330 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D skT53_18690 mcpA; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D skT53_20600 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D skT53_21820 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D skT53_25670 tlpC; methyl-accepting chemotaxis protein TlpC K03406 mcp; methyl-accepting chemotaxis protein D skT53_28340 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D skT53_29400 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D skT53_31300 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D skT53_33170 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D skT53_02670 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D skT53_02680 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D skT53_17240 cheW1; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D skT53_02570 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D skT53_21790 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D skT53_29100 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D skT53_02690 cheC44H; CheY-P-specific phosphatase CheC K03410 cheC; chemotaxis protein CheC D skT53_21800 cheX; CheY-P phosphatase CheX K03409 cheX; chemotaxis protein CheX D skT53_02660 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D skT53_02700 cheD; chemoreceptor glutamine deamidase CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D skT53_03730 cheR; chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D skT53_02440 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D skT53_02550 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D skT53_02560 flagellar motor switch phosphatase FliY K02417 fliN; flagellar motor switch protein FliN D skT53_29020 motility protein A K02556 motA; chemotaxis protein MotA D skT53_29890 flagellar motor protein MotA K02556 motA; chemotaxis protein MotA D skT53_29030 hypothetical protein K02557 motB; chemotaxis protein MotB D skT53_29880 flagellar motor protein MotB K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:eff02040] D skT53_02420 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D skT53_02430 fliF; flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF D skT53_02440 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D skT53_02450 hypothetical protein K02411 fliH; flagellar assembly protein FliH D skT53_02460 EscN/YscN/HrcN family type III secretion system ATPase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D skT53_02470 hypothetical protein K02413 fliJ; flagellar protein FliJ D skT53_34220 hypothetical protein K02413 fliJ; flagellar protein FliJ D skT53_02490 hypothetical protein K02414 fliK; flagellar hook-length control protein FliK D skT53_02540 hypothetical protein K02415 fliL; flagellar protein FliL D skT53_02550 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D skT53_02560 flagellar motor switch phosphatase FliY K02417 fliN; flagellar motor switch protein FliN D skT53_02580 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ D skT53_02590 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D skT53_02600 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D skT53_02610 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D skT53_02630 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D skT53_02620 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D skT53_02400 flagellar basal body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D skT53_02410 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D skT53_02500 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD D skT53_02520 flgG; flagellar basal-body rod protein FlgG K02390 flgE; flagellar hook protein FlgE D skT53_27300 flgG1; flagellar basal body protein K02391 flgF; flagellar basal-body rod protein FlgF D skT53_27310 flgG2; flagellar basal body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D skT53_28490 flgK; flagellar hook-associated protein 1 K02396 flgK; flagellar hook-associated protein 1 D skT53_28500 flgL; flagellar hook-associated protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL D skT53_28540 flagellin K02406 fliC; flagellin D skT53_28560 hypothetical protein K02407 fliD; flagellar hook-associated protein 2 D skT53_28610 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D skT53_29020 motility protein A K02556 motA; chemotaxis protein MotA D skT53_29890 flagellar motor protein MotA K02556 motA; chemotaxis protein MotA D skT53_29030 hypothetical protein K02557 motB; chemotaxis protein MotB D skT53_29880 flagellar motor protein MotB K02557 motB; chemotaxis protein MotB D skT53_28470 hypothetical protein K02398 flgM; negative regulator of flagellin synthesis FlgM D skT53_11910 sigA; RNA polymerase sigma factor SigA K03086 rpoD; RNA polymerase primary sigma factor D skT53_19320 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D skT53_02720 RNA polymerase sigma factor K02405 fliA; RNA polymerase sigma factor FliA C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D skT53_19260 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism [PATH:eff04980] D skT53_10910 yvqK_1; Cob(I)yrinic acid a,c-diamide adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D skT53_35490 yvqK_2; Cob(I)yrinic acid a,c-diamide adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D skT53_06830 methylmalonyl Co-A mutase-associated GTPase MeaB K07588 MMAA; GTPase [EC:3.6.5.-] D skT53_26250 methylmalonyl Co-A mutase-associated GTPase MeaB K07588 MMAA; GTPase [EC:3.6.5.-] D skT53_18640 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:eff01501] D skT53_03260 hypothetical protein K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4] D skT53_00610 mrdA_1; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:eff01502] D skT53_35600 ddlB; D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D skT53_22020 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D skT53_10620 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D skT53_10610 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D skT53_10580 murG1; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase 1 K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D skT53_33210 yodJ; putative carboxypeptidase YodJ K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:eff01503] D skT53_06140 hypothetical protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D skT53_22850 cwlD; N-acetylmuramoyl-L-alanine amidase CwlD K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D skT53_30430 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D skT53_25160 2-alkenal reductase K04771 degP; serine protease Do [EC:3.4.21.107] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:eff01000] C 01001 Protein kinases [BR:eff01001] D skT53_01130 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D skT53_30340 hypothetical protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D skT53_20620 hypothetical protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D skT53_28430 phoR; PAS domain-containing sensor histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D skT53_07650 resE; sensor histidine kinase K07651 resE; two-component system, OmpR family, sensor histidine kinase ResE [EC:2.7.13.3] D skT53_25120 PAS domain-containing sensor histidine kinase K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3] D skT53_01440 two-component sensor histidine kinase K14982 ciaH; two-component system, OmpR family, sensor histidine kinase CiaH [EC:2.7.13.3] D skT53_27610 lisK; two-component sensor histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3] D skT53_31790 hypothetical protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D skT53_28270 degS; signal transduction histidine-protein kinase/phosphatase DegS K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3] D skT53_01740 histidine kinase K07683 nreB; two-component system, NarL family, sensor histidine kinase NreB [EC:2.7.13.3] D skT53_21730 hypothetical protein K13533 kinE; two-component system, sporulation sensor kinase E [EC:2.7.13.3] D skT53_29860 hypothetical protein K13533 kinE; two-component system, sporulation sensor kinase E [EC:2.7.13.3] D skT53_13890 histidine kinase K11691 K11691; two-component system, CitB family, sensor histidine kinase DctS [EC:2.7.13.3] D skT53_22470 lytS; sensor protein LytS K07704 lytS; two-component system, LytTR family, sensor histidine kinase LytS [EC:2.7.13.3] D skT53_32520 sensor histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D skT53_34200 hypothetical protein K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D skT53_02670 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D skT53_11390 sensor histidine kinase K07717 glnK; two-component system, sensor histidine kinase GlnK [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:eff01009] D skT53_21870 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D skT53_30070 pfkA; ATP-dependent 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D skT53_01120 stp; protein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16] C 01002 Peptidases and inhibitors [BR:eff01002] D skT53_10310 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] D skT53_10790 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D skT53_35810 gpr; germination protease K06012 gpr; spore protease [EC:3.4.24.78] D skT53_10490 sporulation sigma-E factor-processing peptidase K06383 spoIIGA; stage II sporulation protein GA (sporulation sigma-E factor processing peptidase) [EC:3.4.23.-] D skT53_21500 guaA; GMP synthase [glutamine-hydrolyzing] K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D skT53_25920 anthranilate synthase component II K07010 K07010; putative glutamine amidotransferase D skT53_00710 hydrolase K19224 lytE; peptidoglycan DL-endopeptidase LytE [EC:3.4.-.-] D skT53_15180 hydrolase K19220 cwlS; peptidoglycan DL-endopeptidase CwlS [EC:3.4.-.-] D skT53_06370 hypothetical protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D skT53_21370 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D skT53_03190 gltS; glutamate synthase K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D skT53_25700 glutamate synthase subunit alpha K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D skT53_22690 glutamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D skT53_09530 asnB; asparagine synthetase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D skT53_14030 asparagine synthetase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D skT53_29350 protease K05520 yhbO; deglycase [EC:3.5.1.124] D skT53_20210 oligoendopeptidase F K08602 pepF; oligoendopeptidase F [EC:3.4.24.-] D skT53_19540 peptidase M14 K01308 yqgT; g-D-glutamyl-meso-diaminopimelate peptidase [EC:3.4.19.11] D skT53_33210 yodJ; putative carboxypeptidase YodJ K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D skT53_07260 peptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D skT53_30250 hypothetical protein K01295 cpg; glutamate carboxypeptidase [EC:3.4.17.11] D skT53_09410 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D skT53_08210 pepT; hypothetical protein K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4] D skT53_08250 hypothetical protein K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4] D skT53_26320 N-acetyldiaminopimelate deacetylase K05823 dapL; N-acetyldiaminopimelate deacetylase [EC:3.5.1.47] D skT53_30480 lytH; L-Ala--D-Glu endopeptidase K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-] D skT53_09720 map_1; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D skT53_23020 map_2; methionine aminopeptidase 1 K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D skT53_34010 hypothetical protein K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D skT53_09190 pepQ; peptidase M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D skT53_19990 ampS; aminopeptidase K19689 ampS; aminopeptidase [EC:3.4.11.-] D skT53_18500 ypwA; carboxypeptidase 1 K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19] D skT53_04250 vesicle-fusing ATPase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D skT53_23720 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D skT53_03780 hypothetical protein K20608 tet; tetrahedral aminopeptidase [EC:3.4.11.-] D skT53_00660 peptidase M50 K06402 spoIVFB; stage IV sporulation protein FB [EC:3.4.24.-] D skT53_21170 zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D skT53_25160 2-alkenal reductase K04771 degP; serine protease Do [EC:3.4.21.107] D skT53_07410 hypothetical protein K04772 degQ; serine protease DegQ [EC:3.4.21.-] D skT53_00730 hypothetical protein K08651 E3.4.21.66; thermitase [EC:3.4.21.66] D skT53_07730 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D skT53_07910 serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D skT53_08030 dacF_1; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D skT53_24450 dacF_2; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D skT53_11620 clpP_1; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D skT53_35010 clpP_2; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D skT53_25050 ATP-dependent protease, Lon family protein K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D skT53_35040 lon1; Lon protease 1 K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D skT53_35030 ATP-dependent protease LonB K04076 lonB; ATP-dependent Lon protease [EC:3.4.21.53] D skT53_01240 ylbL; hypothetical protein K07177 K07177; Lon-like protease D skT53_06990 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D skT53_02140 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D skT53_19810 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D skT53_28190 hypothetical protein K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D skT53_29000 peptidase S41 K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D skT53_24050 cyanophycinase K13282 cphB; cyanophycinase [EC:3.4.15.6] D skT53_13690 hypothetical protein K19225 gluP; rhomboid protease GluP [EC:3.4.21.105] D skT53_08880 SpoIVB peptidase K06399 spoIVB; stage IV sporulation protein B [EC:3.4.21.116] D skT53_14440 head maturation protease of prophage CP-933C K06904 GP4; Escherichia/Staphylococcus phage prohead protease D skT53_02380 clpQ; ATP-dependent protease subunit ClpQ K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D skT53_25960 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D skT53_21310 ywrD; putative gamma-glutamyltransferase YwrD K22602 hpxW; oxamate amidohydrolase [EC:3.5.1.126] C 01003 Glycosyltransferases [BR:eff01003] D skT53_21020 dolichol monophosphate mannose synthase K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83] D skT53_27780 glycosyl transferase family 2 K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83] D skT53_27660 ugtP; processive diacylglycerol beta-glucosyltransferase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315] D skT53_27670 hypothetical protein K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315] D skT53_03260 hypothetical protein K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4] D skT53_26150 penicillin-binding protein 2D K21464 pbpG; penicillin-binding protein 2D [EC:2.4.99.28 3.4.16.4] D skT53_06590 hypothetical protein K20999 pslF; polysaccharide biosynthesis protein PslF D skT53_28250 acetylglucosaminyldiphosphoundecaprenol acetyl-beta-D-mannosaminyltransferase K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] D skT53_15980 hypothetical protein K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-] C 01005 Lipopolysaccharide biosynthesis proteins [BR:eff01005] D skT53_34050 histidinol phosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D skT53_27750 hypothetical protein K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:eff01011] D skT53_10560 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D skT53_27250 murA1; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D skT53_10570 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D skT53_00500 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D skT53_15600 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D skT53_10600 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D skT53_10630 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D skT53_35600 ddlB; D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D skT53_22020 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D skT53_34960 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D skT53_10610 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D skT53_10580 murG1; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase 1 K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D skT53_05510 uppP1; undecaprenyl-diphosphatase 1 K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D skT53_20060 uppP2; undecaprenyl-diphosphatase 2 K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D skT53_27560 bcrC; undecaprenyl-diphosphatase BcrC K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D skT53_28300 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D skT53_34850 phosphatidylglycerophosphatase B K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D skT53_03260 hypothetical protein K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4] D skT53_26150 penicillin-binding protein 2D K21464 pbpG; penicillin-binding protein 2D [EC:2.4.99.28 3.4.16.4] D skT53_00610 mrdA_1; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D skT53_10640 spoVD; stage V sporulation protein D K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein) D skT53_12750 pbpI; penicillin-binding protein 4B K21468 pbpI; penicillin-binding protein 4B D skT53_07730 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D skT53_07910 serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D skT53_08030 dacF_1; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D skT53_24450 dacF_2; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D skT53_33210 yodJ; putative carboxypeptidase YodJ K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D skT53_00710 hydrolase K19224 lytE; peptidoglycan DL-endopeptidase LytE [EC:3.4.-.-] D skT53_06370 hypothetical protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D skT53_15180 hydrolase K19220 cwlS; peptidoglycan DL-endopeptidase CwlS [EC:3.4.-.-] D skT53_30480 lytH; L-Ala--D-Glu endopeptidase K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-] D skT53_30210 transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D skT53_12770 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D skT53_03430 sleB; spore cortex-lytic enzyme K27245 sleB; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D skT53_27260 stage II sporulation protein D K06381 spoIID; stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:4.2.2.29] D skT53_06140 hypothetical protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D skT53_22850 cwlD; N-acetylmuramoyl-L-alanine amidase CwlD K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D skT53_30430 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:eff01004] D skT53_01360 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D skT53_01350 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D skT53_01390 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D skT53_01370 fabG_1; 3-oxoacyl-[acyl-carrier-protein] reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D skT53_04360 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D skT53_08680 short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D skT53_11150 fabG_2; beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D skT53_11440 beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D skT53_18460 fabG_3; 3-oxoacyl-[acyl-carrier-protein] reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D skT53_25630 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D skT53_32420 fabG_4; 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D skT53_27330 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D skT53_19890 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D skT53_18380 enoyl-ACP reductase II K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9] D skT53_19840 fabL; enoyl-[acyl-carrier-protein] reductase [NADPH] FabL K10780 fabL; enoyl-[acyl-carrier protein] reductase III [EC:1.3.1.104] D skT53_17800 thioesterase K12500 tesC; thioesterase III [EC:3.1.2.-] D skT53_21920 acyl-ACP desaturase K03921 FAB2; acyl-[acyl-carrier-protein] desaturase [EC:1.14.19.2 1.14.19.11 1.14.19.26] D skT53_12970 acs_1; AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_13220 acsA_1; acyl--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_22450 acsA_2; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_26440 acs_2; AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_34360 acsA_3; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_34700 acsA_4; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D skT53_04880 acetoacetyl-CoA synthetase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16] D skT53_05980 acetyl-CoA synthetase K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D skT53_05990 hypothetical protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D skT53_04380 lcfA_1; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_04720 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_05070 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_09440 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_13320 hypothetical protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_18290 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_19690 lcfA_2; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_29580 ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_10960 long-chain-fatty-acid--CoA ligase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D skT53_11880 yngI; putative acyl-CoA synthetase YngI K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D skT53_13400 long-chain-fatty-acid--CoA ligase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D skT53_33970 AMP-binding protein K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D skT53_01340 plsX; phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D skT53_03560 plsY; glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D skT53_03480 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins C 01006 Prenyltransferases [BR:eff01006] D skT53_08960 farnesyl-diphosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D skT53_03690 hypothetical protein K00805 hepS; heptaprenyl diphosphate synthase component 1 [EC:2.5.1.30] D skT53_03710 hepT; heptaprenyl diphosphate synthase component 2 K24873 hepT; heptaprenyl diphosphate synthase component 2 [EC:2.5.1.30] D skT53_02810 uppS; isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D skT53_07110 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D skT53_11980 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D skT53_24490 hypothetical protein K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D skT53_18550 ctaB2; protoheme IX farnesyltransferase 2 K02257 COX10; heme o synthase [EC:2.5.1.141] C 01007 Amino acid related enzymes [BR:eff01007] D skT53_25540 glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D skT53_23470 gltX; glutamate--tRNA ligase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D skT53_30860 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D skT53_34230 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D skT53_23450 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D skT53_21250 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D skT53_24160 metS; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D skT53_10390 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D skT53_00480 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D skT53_35520 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D skT53_23590 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D skT53_13140 aspS; aspartate--tRNA(Asp/Asn) ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D skT53_13150 hisS2; histidine--tRNA ligase 2 K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D skT53_11970 glyQS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D skT53_24420 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D skT53_02840 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D skT53_30740 thrS; threonine--tRNA ligase 1 K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D skT53_21940 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D skT53_30790 pheS; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D skT53_30800 pheT; phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D skT53_26140 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D skT53_15380 aminotransferase K08969 mtnE; L-glutamine---4-(methylsulfanyl)-2-oxobutanoate aminotransferase [EC:2.6.1.117] D skT53_30510 aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83] D skT53_26340 aminotransferase K00841 patA; aminotransferase [EC:2.6.1.-] D skT53_34830 aminotransferase K10907 K10907; aminotransferase [EC:2.6.1.-] D skT53_34570 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D skT53_19780 bioF; 8-amino-7-oxononanoate synthase 2 K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D skT53_19980 hypothetical protein K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13] D skT53_28850 argD_1; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D skT53_16900 ectB; diaminobutyrate--2-oxoglutarate transaminase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76] D skT53_34780 argD_2; acetylornithine/acetyl-lysine aminotransferase K09251 patA; putrescine aminotransferase [EC:2.6.1.82] D skT53_19790 bioA; adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D skT53_00370 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D skT53_13500 hemL1; glutamate-1-semialdehyde 2,1-aminomutase 1 K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D skT53_30950 ilvE; branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D skT53_15400 aminodeoxychorismate synthase, component I K03342 pabBC; para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38] D skT53_29650 hypothetical protein K03430 phnW; 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37] D skT53_08750 alanine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D skT53_08170 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D skT53_28150 rffA; dTDP-4-amino-4,6-dideoxygalactose transaminase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59] D skT53_28640 perosamine synthetase K13010 per; perosamine synthetase [EC:2.6.1.102] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:eff00194] D skT53_27110 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D skT53_27100 atpD; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D skT53_27090 atpG; ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D skT53_27080 atpA; ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D skT53_27070 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D skT53_27060 atpF; ATP synthase subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b D skT53_27050 atpE; F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D skT53_27040 atpB; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a D skT53_16100 hypothetical protein K02116 atpI; ATP synthase protein I D skT53_27030 hypothetical protein K02116 atpI; ATP synthase protein I B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:eff03000] D skT53_14650 hypothetical protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D skT53_14660 hypothetical protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D skT53_17970 DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D skT53_06890 LysR family transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon D skT53_15640 LysR family transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon D skT53_17400 LysR family transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon D skT53_27280 sporulation transcriptional regulator SpoIIID K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D D skT53_11950 ccpN; transcriptional repressor CcpN K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator D skT53_03330 catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor D skT53_26900 hypothetical protein K03710 K03710; GntR family transcriptional regulator D skT53_05860 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D skT53_06820 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D skT53_16980 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D skT53_19930 lutR; HTH-type transcriptional regulator LutR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D skT53_26920 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D skT53_35200 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D skT53_05330 hypothetical protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D skT53_14110 hypothetical protein K07978 plmA; GntR family transcriptional regulator D skT53_29560 hypothetical protein K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D skT53_17140 hypothetical protein K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein D skT53_29620 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D skT53_34950 gerE; spore germination protein GerE K01994 gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein D skT53_25440 hypothetical protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D skT53_01800 glnR_1; HTH-type transcriptional regulator GlnR K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor D skT53_07020 glnR_2; HTH-type transcriptional regulator GlnR K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor D skT53_22610 merR-2; Hg(II)-responsive transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D skT53_19000 MerR family transcriptional regulator K11923 cueR; MerR family transcriptional regulator, copper efflux regulator D skT53_33910 transcriptional regulator K11923 cueR; MerR family transcriptional regulator, copper efflux regulator D skT53_16260 MerR family transcriptional regulator K21902 yfmP; MerR family transcriptional regulator, repressor of the yfmOP operon D skT53_08130 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D skT53_09780 zurR; transcriptional regulator ZurR K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator D skT53_34460 perR; peroxide-responsive transcriptional repressor PerR K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator D skT53_25850 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor D skT53_25940 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor D skT53_32020 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor D skT53_32070 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor D skT53_33880 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor D skT53_00670 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D skT53_12880 transcriptional regulator K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor D skT53_20470 AsnC family transcriptional regulator K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor D skT53_13210 hypothetical protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D skT53_10340 transcriptional regulator K26993 sdpR; ArsR family transcriptional regulator, repressor of sdpIR and other operons D skT53_06490 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator D skT53_24360 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator D skT53_35610 mntR; transcriptional regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D skT53_04080 birA; bifunctional ligase/repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D skT53_11370 sigma-54-dependent Fis family transcriptional regulator K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein D skT53_24010 purR; pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor D skT53_05930 sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D skT53_10190 acoR_1; acetoin dehydrogenase operon transcriptional activator AcoR K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D skT53_16330 acoR_2; signal-transduction and transcriptional-control protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D skT53_18820 sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D skT53_21100 sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D skT53_31400 acoR_3; signal-transduction and transcriptional-control protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D skT53_31960 hypothetical protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D skT53_04150 rex; redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor D skT53_21880 codY; GTP-sensing transcriptional pleiotropic repressor CodY K03706 codY; transcriptional pleiotropic repressor D skT53_14190 hypothetical protein K07729 K07729; putative transcriptional regulator D skT53_22010 ndoAI; antitoxin EndoAI K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI D skT53_33460 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D skT53_24170 AbrB family transcriptional regulator K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes D skT53_23910 AbrB family transcriptional regulator K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T D skT53_24650 noc; nucleoid occlusion protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D skT53_24670 spo0J; stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D skT53_08900 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D skT53_35880 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D skT53_23560 CtsR family transcriptional regulator K03708 ctsR; transcriptional regulator of stress and heat shock response D skT53_19310 cggR; central glycolytic genes regulator K05311 cggR; central glycolytic genes regulator D skT53_03680 transcription attenuation protein MtrB K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein) D skT53_10290 pyrR; bifunctional protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D skT53_19830 ylbO; hypothetical protein K06314 rsfA; prespore-specific regulator D skT53_32500 nrdR; transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR D skT53_10680 mraZ; transcriptional regulator MraZ K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:eff03021] D skT53_03920 DEAD/DEAH box helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D skT53_22960 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D skT53_23320 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D skT53_23310 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D skT53_26260 hypothetical protein K03048 rpoE; DNA-directed RNA polymerase subunit delta D skT53_01050 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D skT53_11910 sigA; RNA polymerase sigma factor SigA K03086 rpoD; RNA polymerase primary sigma factor D skT53_25350 hypothetical protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D skT53_08360 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D skT53_07980 sigF; RNA polymerase sigma factor K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D skT53_10470 RNA polymerase sigma factor K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D skT53_10480 sigE; RNA polymerase sigma-E factor K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D skT53_23950 hypothetical protein K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D skT53_35130 sigK; RNA polymerase sigma factor K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D skT53_04140 RNA polymerase sporulation sigma factor SigH K27000 sigH; RNA polymerase sigma-H factor D skT53_23410 sigH; RNA polymerase sigma-H factor K27000 sigH; RNA polymerase sigma-H factor D skT53_14580 RNA polymerase factor sigma-70 K27000 sigH; RNA polymerase sigma-H factor D skT53_31100 sigI; RNA polymerase sigma factor SigI K03093 sigI; RNA polymerase sigma-I factor D skT53_19320 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D skT53_02720 RNA polymerase sigma factor K02405 fliA; RNA polymerase sigma factor FliA D skT53_02880 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA D skT53_09020 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB D skT53_23380 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D skT53_00070 hypothetical protein K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3] D skT53_00090 rsbV; anti-sigma factor antagonist K04749 rsbV; anti-sigma B factor antagonist D skT53_08650 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D skT53_23600 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D skT53_26370 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:eff03019] D skT53_01400 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] D skT53_03090 rnj; ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-] D skT53_07300 rny; ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-] D skT53_19230 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D skT53_07330 RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D skT53_24860 cshA; DEAD-box ATP-dependent RNA helicase CshA K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D skT53_19260 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D skT53_02990 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D skT53_26370 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D skT53_30070 pfkA; ATP-dependent 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D skT53_35900 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D skT53_21590 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D skT53_07100 RNA-binding protein Hfq K03666 hfq; host factor-I protein D skT53_28530 csrA; carbon storage regulator K03563 csrA; carbon storage regulator D skT53_22110 rraA; 4-hydroxy-4-methyl-2-oxoglutarate aldolase K02553 rraA; regulator of ribonuclease activity A D skT53_29300 nucleotide-binding protein K06958 rapZ; RNase adapter protein RapZ C 03041 Spliceosome C 03011 Ribosome [BR:eff03011] D skT53_03490 ypfD; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D skT53_02770 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D skT53_23180 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D skT53_22970 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D skT53_23070 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D skT53_17670 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D skT53_23280 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D skT53_23100 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D skT53_22920 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D skT53_23250 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D skT53_22980 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D skT53_23290 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D skT53_22990 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D skT53_23110 rpsZ; 30S ribosomal protein S14 type Z K02954 RP-S14; small subunit ribosomal protein S14 D skT53_02980 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D skT53_01490 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D skT53_23150 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D skT53_17680 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D skT53_23200 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D skT53_35800 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D skT53_12130 hypothetical protein K02970 RP-S21; small subunit ribosomal protein S21 D skT53_23360 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D skT53_23210 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D skT53_23240 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D skT53_23230 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D skT53_23120 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D skT53_23090 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D skT53_25040 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D skT53_23350 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D skT53_23370 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D skT53_23340 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D skT53_22930 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D skT53_23140 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D skT53_23050 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D skT53_23170 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D skT53_22950 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D skT53_23080 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D skT53_02130 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D skT53_17710 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D skT53_10120 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D skT53_23190 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D skT53_23220 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D skT53_23130 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D skT53_10100 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D skT53_01160 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D skT53_23160 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D skT53_23060 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D skT53_26400 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D skT53_01270 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D skT53_23400 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D skT53_24570 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D skT53_17700 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D skT53_23960 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D skT53_23300 50S ribosomal protein L7ae K07590 RP-L7A; large subunit ribosomal protein L7A D skT53_r00030 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D skT53_r00020 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D skT53_r00170 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:eff03009] D skT53_01400 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] D skT53_12010 era; GTPase Era K03595 era; GTPase D skT53_09900 obg; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-] D skT53_02880 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA D skT53_09020 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB D skT53_23380 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D skT53_24130 rsmA; ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D skT53_01100 rsmB; ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D skT53_23330 ybxB; hypothetical protein K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D skT53_01210 rRNA methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D skT53_12250 ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D skT53_24640 rsmG; ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D skT53_10670 rsmH; ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D skT53_24180 rsmI; ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D skT53_07120 ypiP; hypothetical protein K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] D skT53_08920 TlyA family rRNA (cytidine-2'-O)-methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D skT53_23430 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D skT53_25200 rlmH; ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D skT53_12160 hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D skT53_11830 hypothetical protein K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] D skT53_01110 rlmN; 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D skT53_20840 rlmCD; 23S rRNA (uracil-C(5))-methyltransferase RlmCD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D skT53_07700 rluB; pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D skT53_03760 rluD2; pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D skT53_10300 ylyB; putative RNA pseudouridine synthase YlyB K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D skT53_13970 yhcT; putative RNA pseudouridine synthase YhcT K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D skT53_21750 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D skT53_01510 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM D skT53_07360 30S ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] D skT53_06770 SagD family biosynthesis docking scaffold protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor D skT53_12260 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D skT53_12790 yrrK; putative pre-16S rRNA nuclease K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D skT53_23440 mrnC; mini-ribonuclease 3 K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-] D skT53_07330 RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D skT53_24860 cshA; DEAD-box ATP-dependent RNA helicase CshA K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D skT53_01140 rsgA; putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D skT53_03550 der; GTPase Der K03977 engA; GTPase D skT53_02150 ribosome biogenesis GTPase A K14540 rbgA; ribosome biogenesis GTPase A D skT53_07050 hflX; GTPase HflX K03665 hflX; GTPase D skT53_35400 yqeH; hypothetical protein K06948 yqeH; 30S ribosome assembly GTPase D skT53_26490 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D skT53_31230 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D skT53_02920 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D skT53_02870 rimP; ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP D skT53_24540 S4 domain protein YaaA K14761 rlbA; ribosome-associated protein D skT53_35460 rsfS; ribosomal silencing factor RsfS K09710 ybeB; ribosome-associated protein D skT53_12040 ybeY; endoribonuclease YbeY K07042 ybeY; probable rRNA maturation factor D skT53_35430 RNA-binding protein K07574 yhbY; RNA-binding protein D skT53_28730 ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor D skT53_24900 ychF; ribosome-binding ATPase YchF K06942 ychF; ribosome-binding ATPase D skT53_01260 hypothetical protein K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:eff03016] D skT53_04070 cca; CCA-adding enzyme K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D skT53_02840 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D skT53_10390 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D skT53_35520 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D skT53_24160 metS; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D skT53_25540 glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D skT53_21250 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D skT53_23590 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D skT53_13140 aspS; aspartate--tRNA(Asp/Asn) ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D skT53_21940 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D skT53_11970 glyQS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D skT53_30740 thrS; threonine--tRNA ligase 1 K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D skT53_24420 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D skT53_23450 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D skT53_00480 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D skT53_13150 hisS2; histidine--tRNA ligase 2 K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D skT53_30790 pheS; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D skT53_30800 pheT; phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D skT53_30860 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D skT53_34230 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D skT53_31240 dtd; D-aminoacyl-tRNA deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D skT53_16660 putative HIT-like protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D skT53_20160 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D skT53_22940 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D skT53_02940 tRNA pseudouridine(55) synthase TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D skT53_12870 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D skT53_13230 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D skT53_34310 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D skT53_26490 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D skT53_07110 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D skT53_24620 mnmE; tRNA modification GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D skT53_24630 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D skT53_13450 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D skT53_24580 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D skT53_34980 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D skT53_15430 RNA 2',3'-cyclic phosphodiesterase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D skT53_23470 gltX; glutamate--tRNA ligase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D skT53_24330 hypothetical protein K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D skT53_23620 dus1; putative tRNA-dihydrouridine synthase 1 K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D skT53_07150 miaB; tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D skT53_12240 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5] D skT53_02360 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] D skT53_01520 trmD; tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D skT53_11870 hypothetical protein K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217] D skT53_19460 hypothetical protein K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D skT53_19470 hypothetical protein K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D skT53_30770 RNA methyltransferase K03437 spoU; RNA methyltransferase, TrmH family D skT53_13060 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D skT53_01560 hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D skT53_32680 hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D skT53_15100 hypothetical protein K13628 iscA; iron-sulfur cluster assembly protein D skT53_21890 hypothetical protein K13628 iscA; iron-sulfur cluster assembly protein D skT53_32730 hypothetical protein K13628 iscA; iron-sulfur cluster assembly protein D skT53_35620 heme biosynthesis protein HemY K13628 iscA; iron-sulfur cluster assembly protein D skT53_31120 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D skT53_15540 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D skT53_00110 6-pyruvoyltetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D skT53_15520 6-carboxytetrahydropterin synthase QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D skT53_15530 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D skT53_15930 hypothetical protein K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D skT53_19570 queG; epoxyqueuosine reductase K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D skT53_16620 tRNA 2-selenouridine synthase K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3] D skT53_31130 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D skT53_23740 tilS; tRNA(Ile)-lysidine synthase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D skT53_21760 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D skT53_21740 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D skT53_21770 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D skT53_15440 tRNA threonylcarbamoyladenosine dehydratase K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase D skT53_31830 hypothetical protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase D skT53_01250 ylbM; UPF0348 protein YlbM K27343 tmcAL; tRNA(Met) cytidine acetate ligase [EC:6.3.4.-] D skT53_19230 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D skT53_02990 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:eff03012] D skT53_02910 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D skT53_17690 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D skT53_21690 uup; ABC transporter ATP-binding protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D skT53_02780 tsf; elongation factor Ts K02357 tsf; elongation factor Ts D skT53_23260 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D skT53_23270 elongation factor G K02355 fusA; elongation factor G D skT53_29280 selenocysteine-specific translation elongation factor K03833 selB; selenocysteine-specific elongation factor D skT53_26420 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D skT53_02800 frr; ribosome-recycling factor K02838 frr; ribosome recycling factor D skT53_26430 prmC; release factor glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D skT53_23940 spoVC; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D skT53_23000 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D skT53_09180 efp; elongation factor P K02356 efp; elongation factor P D skT53_28770 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 C 03110 Chaperones and folding catalysts [BR:eff03110] D skT53_23530 ATP-dependent Clp protease ATP-binding subunit ClpC K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC D skT53_35020 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D skT53_02390 hslU; ATP-dependent protease ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D skT53_35900 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D skT53_21590 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D skT53_35910 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D skT53_23680 hslO; 33 kDa chaperonin K04083 hslO; molecular chaperone Hsp33 D skT53_35890 nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D skT53_04600 hypothetical protein K13993 HSP20; HSP20 family protein D skT53_16460 hypothetical protein K13993 HSP20; HSP20 family protein D skT53_20720 heat-shock protein Hsp20 K13993 HSP20; HSP20 family protein D skT53_30560 heat-shock protein Hsp20 K13993 HSP20; HSP20 family protein D skT53_21600 molecular chaperone GroES K04078 groES; chaperonin GroES D skT53_25160 2-alkenal reductase K04771 degP; serine protease Do [EC:3.4.21.107] D skT53_04250 vesicle-fusing ATPase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D skT53_23720 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D skT53_27040 atpB; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a D skT53_00730 hypothetical protein K08651 E3.4.21.66; thermitase [EC:3.4.21.66] D skT53_34090 ppiB; peptidyl-prolyl cis-trans isomerase B K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D skT53_21220 hypothetical protein K07533 prsA; foldase protein PrsA [EC:5.2.1.8] D skT53_13670 trxA_1; thioredoxin K03671 TXN; thioredoxin D skT53_17010 trxA_2; thioredoxin K03671 TXN; thioredoxin D skT53_07690 resA; thiol-disulfide oxidoreductase ResA K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE C 04131 Membrane trafficking [BR:eff04131] D skT53_03720 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D skT53_19300 gapA; glyceraldehyde-3-phosphate dehydrogenase 1 K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D skT53_30080 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] C 04121 Ubiquitin system C 03051 Proteasome C 03032 DNA replication proteins [BR:eff03032] D skT53_19590 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D skT53_14650 hypothetical protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D skT53_14660 hypothetical protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D skT53_17970 DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D skT53_03620 hup; transcriptional regulator K03530 hupB; DNA-binding protein HU-beta D skT53_06950 transcriptional regulator K03530 hupB; DNA-binding protein HU-beta D skT53_23880 transcriptional regulator K03530 hupB; DNA-binding protein HU-beta D skT53_24560 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D skT53_25060 dnaC; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D skT53_11920 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D skT53_04270 hypothetical protein K11144 dnaI; primosomal protein DnaI D skT53_24910 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D skT53_30010 DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D skT53_02860 polC; DNA polymerase III PolC-type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D skT53_24550 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D skT53_35780 yqeN; hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D skT53_24220 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D skT53_02100 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D skT53_14940 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D skT53_24320 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D skT53_02180 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D skT53_30170 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D skT53_21140 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D skT53_24500 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D skT53_24510 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D skT53_02350 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:eff03036] D skT53_14650 hypothetical protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D skT53_14660 hypothetical protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D skT53_17970 DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D skT53_01400 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] D skT53_03620 hup; transcriptional regulator K03530 hupB; DNA-binding protein HU-beta D skT53_06950 transcriptional regulator K03530 hupB; DNA-binding protein HU-beta D skT53_23880 transcriptional regulator K03530 hupB; DNA-binding protein HU-beta D skT53_24560 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D skT53_15250 dps; general stress protein 20U K04047 dps; starvation-inducible DNA-binding protein D skT53_07100 RNA-binding protein Hfq K03666 hfq; host factor-I protein D skT53_01450 smc; chromosome partition protein Smc K03529 smc; chromosome segregation protein D skT53_07840 scpA; segregation and condensation protein A K05896 scpA; segregation and condensation protein A D skT53_07830 scpB; segregation and condensation protein B K06024 scpB; segregation and condensation protein B D skT53_10510 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D skT53_23840 hypothetical protein K13052 divIC; cell division protein DivIC D skT53_28980 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D skT53_03150 spoIIIE; DNA translocase SpoIIIE K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D skT53_10660 hypothetical protein K03586 ftsL; cell division protein FtsL D skT53_10550 hypothetical protein K03589 ftsQ; cell division protein FtsQ D skT53_10590 spoVE; stage V sporulation protein E K03588 ftsW; cell division protein FtsW D skT53_15410 ftsW; stage V sporulation protein E K03588 ftsW; cell division protein FtsW D skT53_28990 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein D skT53_10500 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D skT53_30810 zapA; cell division protein ZapA K09888 zapA; cell division protein ZapA D skT53_06140 hypothetical protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D skT53_22850 cwlD; N-acetylmuramoyl-L-alanine amidase CwlD K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D skT53_30430 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D skT53_00620 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D skT53_00630 minD; site-determining protein K03609 minD; septum site-determining protein MinD D skT53_10400 septum formation initiator K04074 divIVA; cell division initiation protein D skT53_10430 hypothetical protein K09772 sepF; cell division inhibitor SepF D skT53_00580 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D skT53_27290 mbl; MreB-like protein K03569 mreB; rod shape-determining protein MreB and related proteins D skT53_00590 cell shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D skT53_00600 hypothetical protein K03571 mreD; rod shape-determining protein MreD D skT53_00640 rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D skT53_06210 rodA; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D skT53_15390 mrdB; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D skT53_24660 soj; sporulation initiation inhibitor protein Soj K03496 parA; chromosome partitioning protein D skT53_24650 noc; nucleoid occlusion protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D skT53_24670 spo0J; stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D skT53_24630 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D skT53_24640 rsmG; ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D skT53_02360 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] D skT53_02370 xerD_1; tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC D skT53_08090 xerD_2; tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD D skT53_14050 hypothetical protein K04763 xerD; integrase/recombinase XerD D skT53_15490 hypothetical protein K04763 xerD; integrase/recombinase XerD D skT53_23890 yabN; hypothetical protein K02499 yabN; tetrapyrrole methylase family protein / MazG family protein D skT53_22840 mrp; iron-sulfur cluster carrier protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D skT53_35050 engB; putative GTP-binding protein EngB K03978 engB; GTP-binding protein D skT53_29320 whiA; putative sporulation transcription regulator WhiA K09762 whiA; cell division protein WhiA C 03400 DNA repair and recombination proteins [BR:eff03400] D skT53_04630 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D skT53_25610 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D skT53_19960 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D skT53_03200 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D skT53_03920 DEAD/DEAH box helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D skT53_14140 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D skT53_29290 yvcI; putative Nudix hydrolase YvcI K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D skT53_03020 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D skT53_19740 hypothetical protein K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] D skT53_22260 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D skT53_07510 alkA; DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D skT53_30180 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D skT53_19200 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D skT53_13660 nfo; putative endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D skT53_31210 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D skT53_21140 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D skT53_30170 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D skT53_29050 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A D skT53_29040 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B D skT53_34860 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C D skT53_02110 pcrA_1; DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D skT53_03320 yjcD; putative ATP-dependent DNA helicase YjcD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D skT53_21150 pcrA_2; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D skT53_23320 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D skT53_23310 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D skT53_22960 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D skT53_26260 hypothetical protein K03048 rpoE; DNA-directed RNA polymerase subunit delta D skT53_01050 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D skT53_23920 mfd; transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D skT53_07140 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D skT53_30840 mutSB; endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D skT53_07130 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D skT53_08980 xseA; exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D skT53_08970 xseB; exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D skT53_30010 DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D skT53_02860 polC; DNA polymerase III PolC-type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D skT53_24550 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D skT53_35780 yqeN; hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D skT53_24220 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D skT53_02100 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D skT53_14940 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D skT53_24320 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D skT53_24910 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D skT53_17960 very short patch repair endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] D skT53_07320 recA; protein RecA K03553 recA; recombination protein RecA D skT53_31070 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D skT53_31080 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D skT53_31060 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D skT53_01070 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D skT53_32360 hypothetical protein K03547 sbcD; DNA repair protein SbcD/Mre11 D skT53_23520 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D skT53_24530 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D skT53_01190 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D skT53_11990 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D skT53_24300 recR; recombination protein RecR K06187 recR; recombination protein RecR D skT53_08890 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D skT53_17420 hypothetical protein K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] D skT53_17430 hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D skT53_20760 cas1; CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 D skT53_31320 ku; non-homologous end joining protein Ku K10979 ku; DNA end-binding protein Ku D skT53_04160 DNA polymerase domain-containing protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D skT53_31700 DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D skT53_24500 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D skT53_24510 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D skT53_02350 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D skT53_03620 hup; transcriptional regulator K03530 hupB; DNA-binding protein HU-beta D skT53_06950 transcriptional regulator K03530 hupB; DNA-binding protein HU-beta D skT53_23880 transcriptional regulator K03530 hupB; DNA-binding protein HU-beta D skT53_14750 hypothetical protein K07455 recT; recombination protein RecT D skT53_23690 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D skT53_06990 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D skT53_07310 hypothetical protein K03565 recX; regulatory protein D skT53_04130 dinG; ATP-dependent helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D skT53_32510 hypothetical protein K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D skT53_32320 hypothetical protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D skT53_35370 ribonucleotide-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D skT53_02930 DHH family phosphoesterase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] D skT53_24090 phosphoesterase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] C 03029 Mitochondrial biogenesis [BR:eff03029] D skT53_02910 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D skT53_17690 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D skT53_02780 tsf; elongation factor Ts K02357 tsf; elongation factor Ts D skT53_23260 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D skT53_23270 elongation factor G K02355 fusA; elongation factor G D skT53_22380 MBL fold hydrolase K16639 LACTB2; endoribonuclease LACTB2 [EC:3.1.27.-] D skT53_32480 MBL fold metallo-hydrolase K16639 LACTB2; endoribonuclease LACTB2 [EC:3.1.27.-] D skT53_12010 era; GTPase Era K03595 era; GTPase D skT53_30860 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D skT53_35520 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D skT53_13140 aspS; aspartate--tRNA(Asp/Asn) ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D skT53_11970 glyQS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D skT53_21250 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D skT53_07740 amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D skT53_20930 gatA; glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D skT53_25930 amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D skT53_20920 gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D skT53_20940 hypothetical protein K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D skT53_24910 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D skT53_35900 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D skT53_35890 nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D skT53_21590 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D skT53_21600 molecular chaperone GroES K04078 groES; chaperonin GroES D skT53_35910 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D skT53_12870 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D skT53_13230 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D skT53_34310 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D skT53_22840 mrp; iron-sulfur cluster carrier protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D skT53_18550 ctaB2; protoheme IX farnesyltransferase 2 K02257 COX10; heme o synthase [EC:2.5.1.141] D skT53_20530 ctaA; heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9] D skT53_24600 spoIIIJ; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D skT53_13520 hypothetical protein K07152 SCO1; protein SCO1 D skT53_16120 hypothetical protein K07152 SCO1; protein SCO1 D skT53_33540 hypothetical protein K07152 SCO1; protein SCO1 B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:eff02000] D skT53_25730 multidrug ABC transporter permease/ATP-binding protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump D skT53_25740 multidrug ABC transporter ATP-binding protein K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump D skT53_34160 multidrug ABC transporter ATPase K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D skT53_12360 molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein D skT53_26390 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein D skT53_12350 yvgM; putative molybdenum transport system permease protein YvgM K02018 modB; molybdate transport system permease protein D skT53_31350 molybdenum ABC transporter permease K02018 modB; molybdate transport system permease protein D skT53_21050 tungsten ABC transporter substrate-binding protein K05772 tupA; tungstate transport system substrate-binding protein D skT53_21060 ABC transporter permease K05773 tupB; tungstate transport system permease protein D skT53_21070 hypothetical protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D skT53_00300 ytlA; putative binding protein YtlA K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D skT53_01820 sulfonate ABC transporter substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D skT53_11330 sulfonate ABC transporter substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D skT53_07760 ABC transporter substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D skT53_01830 ABC transporter permease K02050 ABC.SN.P; NitT/TauT family transport system permease protein D skT53_07770 hypothetical protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein D skT53_11310 hypothetical protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein D skT53_35090 ytlD; putative ABC transporter permease protein YtlD K02050 ABC.SN.P; NitT/TauT family transport system permease protein D skT53_01840 ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D skT53_35100 ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D skT53_11320 nitrate ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D skT53_33040 yjkA; UPF0014 membrane protein YjkA K02069 STAR2; UDP-glucose/iron transport system permease protein D skT53_33030 yjkB; putative ABC transporter ATP-binding protein YjkB K02068 STAR1; UDP-glucose/iron transport system ATP-binding protein D skT53_28350 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D skT53_28360 yqgH; putative ABC transporter permease protein YqgH K02037 pstC; phosphate transport system permease protein D skT53_28370 phosphate transport system permease protein PstA K02038 pstA; phosphate transport system permease protein D skT53_28380 pstB; phosphate import ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D skT53_29700 hypothetical protein K02044 phnD; phosphonate transport system substrate-binding protein D skT53_29710 phnE; phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein D skT53_29720 phnC; phosphonates import ATP-binding protein PhnC K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D skT53_11420 glnH; glutamine ABC transporter substrate-binding protein K10039 peb1A; aspartate/glutamate/glutamine transport system substrate-binding protein D skT53_11400 glutamine ABC transporter permease K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein D skT53_11410 glnP; glutamine ABC transporter permease K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein D skT53_11430 amino acid ABC transporter ATP-binding protein K10041 peb1C; aspartate/glutamate/glutamine transport system ATP-binding protein [EC:7.4.2.1] D skT53_04440 branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D skT53_04670 branched chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D skT53_05580 hypothetical protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D skT53_05650 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D skT53_06020 livJ; branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D skT53_10090 amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D skT53_12650 amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D skT53_15720 ethanolamine utilization protein EutJ K01999 livK; branched-chain amino acid transport system substrate-binding protein D skT53_31970 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D skT53_04400 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D skT53_04680 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D skT53_05660 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D skT53_05680 hypothetical protein K01997 livH; branched-chain amino acid transport system permease protein D skT53_06030 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D skT53_10080 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D skT53_12640 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D skT53_15760 livH; branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D skT53_31980 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D skT53_04410 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D skT53_04690 metal-dependent hydrolase K01995 livG; branched-chain amino acid transport system ATP-binding protein D skT53_06040 metal-dependent hydrolase K01995 livG; branched-chain amino acid transport system ATP-binding protein D skT53_10070 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D skT53_12630 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D skT53_15750 ABC transporter K01998 livM; branched-chain amino acid transport system permease protein D skT53_31990 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D skT53_04420 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D skT53_05690 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D skT53_10060 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D skT53_12620 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D skT53_15740 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D skT53_32000 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D skT53_04430 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D skT53_04700 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D skT53_05600 livF; ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D skT53_05700 hypothetical protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D skT53_06050 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D skT53_10050 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D skT53_12610 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D skT53_15730 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D skT53_32010 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D skT53_05160 sfbA; metal ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D skT53_29490 TonB-dependent receptor K02073 metQ; D-methionine transport system substrate-binding protein D skT53_05150 sfbC; ABC transporter permease K02072 metI; D-methionine transport system permease protein D skT53_29480 D-methionine ABC transporter K02072 metI; D-methionine transport system permease protein D skT53_05140 methionine import ATP-binding protein MetN K02071 metN; D-methionine transport system ATP-binding protein D skT53_29470 metN; methionine import ATP-binding protein MetN K02071 metN; D-methionine transport system ATP-binding protein D skT53_33080 ABC transporter substrate-binding protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein D skT53_33070 ABC transporter permease K05832 K05832; putative tryptophan/tyrosine transport system permease protein D skT53_33060 ABC transporter ATP-binding protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein D skT53_16950 ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D skT53_28700 basic amino acid ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D skT53_16930 ectoine/hydroxyectoine ABC transporter permease subunit EhuD K02029 ABC.PA.P; polar amino acid transport system permease protein D skT53_16940 ectoine/hydroxyectoine ABC transporter permease subunit EhuC K02029 ABC.PA.P; polar amino acid transport system permease protein D skT53_28710 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein D skT53_05390 hypothetical protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D skT53_16920 ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D skT53_28720 peptide ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D skT53_05030 peptide ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D skT53_05040 glutathione ABC transporter permease GsiD K02034 ABC.PE.P1; peptide/nickel transport system permease protein D skT53_05050 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D skT53_05060 ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D skT53_34330 cobalamin-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D skT53_18490 ylmA; putative ABC transporter ATP-binding protein YlmA K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D skT53_02230 yvrC; putative ABC transporter substrate-binding lipoprotein YvrC K25034 btuF; cobalamin transport system substrate-binding protein D skT53_02240 corrinoid ABC transporter permease K25027 btuC; cobalamin transport system permease protein D skT53_02250 ABC transporter ATP-binding protein K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8] D skT53_09770 ABC transporter substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein D skT53_09750 zurM; metal ABC transporter permease K09816 znuB; zinc transport system permease protein D skT53_09760 zinc ABC transporter ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D skT53_01870 hypothetical protein K02009 cbiN; cobalt/nickel transport protein D skT53_01880 hypothetical protein K02008 cbiQ; cobalt/nickel transport system permease protein D skT53_01860 cobalamin biosynthesis protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein D skT53_01890 cobalt ABC transporter ATP-binding protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein D skT53_17660 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component D skT53_17650 ecfA; energy-coupling factor transporter ATP-binding protein EcfA K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D skT53_17640 hypothetical protein K24040 ecfTA; energy-coupling factor transport system permease/ATP-binding protein [EC:7.-.-.-] D skT53_27710 transport permease protein K09690 wzm; homopolymeric O-antigen transport system permease protein D skT53_27720 ABC transporter K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D skT53_28990 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein D skT53_28980 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D skT53_00870 ABC transporter permease K25154 evrC; viologen exporter family transport system permease protein D skT53_00880 ABC transporter permease K25155 evrB; viologen exporter family transport system permease protein D skT53_00890 ABC transporter ATP-binding protein K25156 evrA; viologen exporter family transport system ATP-binding protein D skT53_08320 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D skT53_25420 transport permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein D skT53_29500 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D skT53_30380 bacitracin ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D skT53_08330 ABC transporter K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D skT53_25430 hypothetical protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D skT53_25580 ABC transporter K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D skT53_30370 bacitracin ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D skT53_00430 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D skT53_25320 hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein D skT53_25330 hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein D skT53_00440 macrolide ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D skT53_25310 macrolide ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D skT53_20460 ABC transporter ATP-binding protein K09013 sufC; Fe-S cluster assembly ATP-binding protein D skT53_11890 membrane protein K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5 D skT53_21320 MFS transporter K03761 kgtP; MFS transporter, MHS family, alpha-ketoglutarate permease D skT53_32280 hypothetical protein K03762 proP; MFS transporter, MHS family, proline/betaine transporter D skT53_33640 ttuB; MFS transporter K13021 ttuB; MFS transporter, ACS family, tartrate transporter D skT53_05880 gudP; putative glucarate transporter K08194 dgoT; MFS transporter, ACS family, D-galactonate transporter D skT53_12410 MFS transporter K08194 dgoT; MFS transporter, ACS family, D-galactonate transporter D skT53_06710 MFS transporter K23016 lgoT; MFS transporter, ACS family, L-galactonate transporter D skT53_24920 yycB; putative transporter YycB K03449 MFS.CP; MFS transporter, CP family, cyanate transporter D skT53_21910 MFS transporter K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter D skT53_01650 narK; MFS transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D skT53_02050 nasA; nitrate transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D skT53_25260 hypothetical protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D skT53_08580 multidrug resistance protein K08161 mdtG; MFS transporter, DHA1 family, multidrug resistance protein D skT53_00920 MFS transporter K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein D skT53_03370 yitG; putative MFS-type transporter YitG K08221 yitG; MFS transporter, ACDE family, multidrug resistance protein D skT53_16250 multidrug resistance protein K08221 yitG; MFS transporter, ACDE family, multidrug resistance protein D skT53_22100 yfnC; putative MFS-type transporter YfnC K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein D skT53_35330 MFS transporter K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein D skT53_30290 yqgE; hypothetical protein K08222 yqgE; MFS transporter, YQGE family, putative transporter D skT53_09650 MFS transporter K08369 ydjE; MFS transporter, putative metabolite:H+ symporter D skT53_18100 MFS transporter K08369 ydjE; MFS transporter, putative metabolite:H+ symporter D skT53_29360 ydjE; MFS transporter K08369 ydjE; MFS transporter, putative metabolite:H+ symporter D skT53_32880 MFS transporter K08369 ydjE; MFS transporter, putative metabolite:H+ symporter D skT53_00380 ptsI; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D skT53_05720 glpF; aquaporin K02440 glpF; glycerol uptake facilitator D skT53_10170 aquaporin K02440 glpF; glycerol uptake facilitator D skT53_02070 ammonium transporter K03320 amt; ammonium transporter, Amt family D skT53_18760 ammonium transporter K03320 amt; ammonium transporter, Amt family D skT53_34590 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D skT53_23780 yabS; hypothetical protein K07114 yfbK; Ca-activated chloride channel homolog D skT53_11500 yrhG; putative transporter YrhG K21993 fdhC; formate transporter D skT53_34900 mscL; large-conductance mechanosensitive channel K03282 mscL; large conductance mechanosensitive channel D skT53_24820 mechanosensitive ion channel protein MscS K22044 ybiO; moderate conductance mechanosensitive channel D skT53_31950 transporter protein K22112 amiS; putative amide transporter protein D skT53_29020 motility protein A K02556 motA; chemotaxis protein MotA D skT53_29890 flagellar motor protein MotA K02556 motA; chemotaxis protein MotA D skT53_29030 hypothetical protein K02557 motB; chemotaxis protein MotB D skT53_29880 flagellar motor protein MotB K02557 motB; chemotaxis protein MotB D skT53_11720 yfjQ; putative metal ion transporter YfjQ K03284 corA; magnesium transporter D skT53_34370 corA; magnesium transport protein CorA K03284 corA; magnesium transporter D skT53_04890 crcB1; putative fluoride ion transporter CrcB 1 K06199 crcB; fluoride exporter D skT53_04900 crcB2; putative fluoride ion transporter CrcB 2 K06199 crcB; fluoride exporter D skT53_22600 hypothetical protein K19059 merE; mercuric ion transport protein D skT53_18990 membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D skT53_22230 membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D skT53_27430 hypothetical protein K21449 ata; trimeric autotransporter adhesin D skT53_29380 cidA; holin-like protein CidA K06518 cidA; holin-like protein D skT53_30630 hypothetical protein K06518 cidA; holin-like protein D skT53_19630 germination protein K06296 gerKB; spore germination protein KB D skT53_22890 germination protein K06296 gerKB; spore germination protein KB D skT53_18170 yndE; spore germination protein YndE K06311 yndE; spore germination protein D skT53_20510 cation transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein D skT53_35760 cation transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein D skT53_13480 divalent cation transporter K16267 zipB; zinc and cadmium transporter D skT53_15770 membrane protein K08978 TC.BAT1; bacterial/archaeal transporter family protein D skT53_29550 EamA family transporter K05786 rarD; chloramphenicol-sensitive protein RarD D skT53_07540 hypothetical protein K09771 TC.SMR3; small multidrug resistance family-3 protein D skT53_21970 hypothetical protein K03303 lutP; lactate permease D skT53_34420 calcium/proton exchanger K07300 chaA; Ca2+:H+ antiporter D skT53_34270 cysP; sulfate permease CysP K16331 ylnA; sulfate permease D skT53_22430 cation acetate symporter K14393 actP; cation/acetate symporter D skT53_22460 ywcA; putative symporter YwcA K14393 actP; cation/acetate symporter D skT53_34400 cation acetate symporter K14393 actP; cation/acetate symporter D skT53_13910 dctA; C4-dicarboxylate transport protein K11103 dctA; aerobic C4-dicarboxylate transport protein D skT53_13950 sodium:proton antiporter K11105 cvrA; potassium/hydrogen antiporter D skT53_30750 potassium uptake protein, TrkH family K03498 trkH; trk/ktr system potassium uptake protein D skT53_30760 potassium transporter Trk K03499 trkA; trk/ktr system potassium uptake protein D skT53_10280 uraA; uracil permease K02824 uraA; uracil permease D skT53_21490 permease K06901 pbuG; adenine/guanine/hypoxanthine permease D skT53_06480 chrA; chromate transporter K07240 chrA; chromate transporter D skT53_29840 ywrB; putative transporter YwrB K07240 chrA; chromate transporter D skT53_29850 ywrA; putative transporter YwrA K07240 chrA; chromate transporter D skT53_31610 sodium-independent anion transporter K03321 TC.SULP; sulfate permease, SulP family D skT53_13470 mntH; divalent metal cation transporter MntH K03322 mntH; manganese transport protein D skT53_13720 C4-dicarboxylate ABC transporter K11688 dctP; C4-dicarboxylate-binding protein DctP D skT53_13810 C4-dicarboxylate ABC transporter K11688 dctP; C4-dicarboxylate-binding protein DctP D skT53_17500 C4-dicarboxylate ABC transporter K11688 dctP; C4-dicarboxylate-binding protein DctP D skT53_13870 TRAP transporter permease K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D skT53_17490 TRAP transporter permease K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D skT53_13860 C4-dicarboxylate ABC transporter permease K11690 dctM; C4-dicarboxylate transporter, DctM subunit D skT53_17480 C4-dicarboxylate ABC transporter permease K11690 dctM; C4-dicarboxylate transporter, DctM subunit D skT53_19050 C4-dicarboxylate ABC transporter permease K11690 dctM; C4-dicarboxylate transporter, DctM subunit D skT53_25770 dehydroascorbate transporter K21393 yiaN; TRAP-type transport system large permease protein D skT53_25760 ABC transporter permease K21394 yiaM; TRAP-type transport system small permease protein D skT53_19070 ABC transporter substrate-binding protein K21395 yiaO; TRAP-type transport system periplasmic protein D skT53_25790 ABC transporter substrate-binding protein K21395 yiaO; TRAP-type transport system periplasmic protein D skT53_12170 hypothetical protein K03324 yjbB; phosphate:Na+ symporter D skT53_33110 ywrK; putative arsenical pump membrane protein K03893 arsB; arsenical pump membrane protein D skT53_13200 arsB_1; arsenite resistance protein ArsB K03325 ACR3; arsenite transporter D skT53_31170 spoVB_3; stage V sporulation protein B K06409 spoVB; stage V sporulation protein B D skT53_04640 membrane protein K24180 mleP; malate permease and related proteins D skT53_06940 yisU; putative amino-acid transporter YisU K06895 lysE; L-lysine exporter family protein LysE/ArgO D skT53_00770 branched-chain amino acid permease K26605 azlC; branched chain amino acid efflux pump D skT53_00760 branched-chain amino acid transporter K26606 azlD; branched chain amino acid efflux pump D skT53_26870 hypothetical protein K07793 tctA; putative tricarboxylic transport membrane protein D skT53_26860 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D skT53_26850 hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein D skT53_20690 hypothetical protein K22736 VIT; vacuolar iron transporter family protein D skT53_10590 spoVE; stage V sporulation protein E K03588 ftsW; cell division protein FtsW D skT53_15410 ftsW; stage V sporulation protein E K03588 ftsW; cell division protein FtsW D skT53_26500 mntP; putative manganese efflux pump MntP K23242 mntP; manganese efflux pump family protein D skT53_08770 hypothetical protein K07243 FTR; high-affinity iron transporter D skT53_06930 efeM; putative iron uptake system component EfeM K07224 efeO; iron uptake system component EfeO D skT53_06920 efeN; putative deferrochelatase/peroxidase EfeN K16301 efeB; deferrochelatase/peroxidase EfeB [EC:1.11.1.-] D skT53_07420 nickel/cobalt efflux system K08970 rcnA; nickel/cobalt transporter (NicO) family protein D skT53_08350 hypothetical protein K03641 tolB; TolB protein D skT53_16840 cytochrome C biogenesis protein CcdA K06196 ccdA; cytochrome c-type biogenesis protein D skT53_32790 ccdA_1; cytochrome C biogenesis protein CcdA K06196 ccdA; cytochrome c-type biogenesis protein D skT53_33360 ccdA_2; cytochrome c biosynthesis protein K06196 ccdA; cytochrome c-type biogenesis protein D skT53_33500 ccdA_3; cytochrome C biogenesis protein CcdA K06196 ccdA; cytochrome c-type biogenesis protein D skT53_01680 hypothetical protein K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D skT53_01690 hypothetical protein K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D skT53_01700 narH; nitrate reductase beta chain K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D skT53_01720 nitrate reductase subunit gamma K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D skT53_31660 hypothetical protein K04758 feoA; ferrous iron transport protein A D skT53_31670 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B D skT53_02080 magnesium transporter MgtC K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D skT53_03160 hypothetical protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D skT53_31780 hypothetical protein K14166 ycnJ; copper transport protein C 02044 Secretion system [BR:eff02044] D skT53_09860 hypothetical protein K02455 gspF; general secretion pathway protein F D skT53_10790 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D skT53_16080 hypothetical protein K02279 cpaB; pilus assembly protein CpaB D skT53_31490 hypothetical protein K02279 cpaB; pilus assembly protein CpaB D skT53_16060 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D skT53_31510 secretory protein kinase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D skT53_16050 hypothetical protein K12510 tadB; tight adherence protein B D skT53_16040 hypothetical protein K12511 tadC; tight adherence protein C D skT53_31530 hypothetical protein K12511 tadC; tight adherence protein C D skT53_16020 hypothetical protein K02651 flp; pilus assembly protein Flp/PilA D skT53_31540 hypothetical protein K02651 flp; pilus assembly protein Flp/PilA D skT53_10420 membrane protein K02221 yggT; YggT family protein D skT53_35660 hypothetical protein K02237 comEA; competence protein ComEA D skT53_23800 dCMP deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12] D skT53_35680 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC D skT53_19340 proC; pyrroline-5-carboxylate reductase K02239 comER; competence protein ComER D skT53_09850 hypothetical protein K02245 comGC; competence protein ComGC D skT53_02630 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D skT53_02620 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D skT53_02200 hypothetical protein K04061 flhB2; flagellar biosynthesis protein D skT53_02430 fliF; flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF D skT53_02450 hypothetical protein K02411 fliH; flagellar assembly protein FliH D skT53_02460 EscN/YscN/HrcN family type III secretion system ATPase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D skT53_02560 flagellar motor switch phosphatase FliY K02417 fliN; flagellar motor switch protein FliN D skT53_02580 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ D skT53_02590 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D skT53_02600 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D skT53_02610 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D skT53_18040 hypothetical protein K20266 trbJ; type IV secretion system protein TrbJ D skT53_28760 hypothetical protein K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D skT53_31190 hypothetical protein K03072 secD; preprotein translocase subunit SecD D skT53_23390 hypothetical protein K03073 secE; preprotein translocase subunit SecE D skT53_31200 hypothetical protein K03074 secF; preprotein translocase subunit SecF D skT53_19250 hypothetical protein K03075 secG; preprotein translocase subunit SecG D skT53_23040 secY; protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D skT53_01480 ftsY_2; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D skT53_01460 ftsY_1; signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor D skT53_31140 hypothetical protein K03210 yajC; preprotein translocase subunit YajC D skT53_24600 spoIIIJ; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D skT53_13650 hypothetical protein K03116 tatA; sec-independent protein translocase protein TatA D skT53_33590 hypothetical protein K03116 tatA; sec-independent protein translocase protein TatA D skT53_06150 tatC; sec-independent protein translocase protein TatC K03118 tatC; sec-independent protein translocase protein TatC D skT53_21620 tatC1; Sec-independent protein translocase protein TatCd K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:eff02042] D skT53_18990 membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D skT53_22230 membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D skT53_21260 hemolysin III K11068 hlyIII; hemolysin III D skT53_05500 hypothetical protein K01114 plc; phospholipase C [EC:3.1.4.3] C 02022 Two-component system [BR:eff02022] D skT53_20620 hypothetical protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D skT53_28430 phoR; PAS domain-containing sensor histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D skT53_22720 DNA-binding response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D skT53_28420 phoP; DNA-binding response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D skT53_07650 resE; sensor histidine kinase K07651 resE; two-component system, OmpR family, sensor histidine kinase ResE [EC:2.7.13.3] D skT53_07660 resD_1; DNA-binding response regulator K07775 resD; two-component system, OmpR family, response regulator ResD D skT53_33400 DNA-binding response regulator K07775 resD; two-component system, OmpR family, response regulator ResD D skT53_25120 PAS domain-containing sensor histidine kinase K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3] D skT53_25110 DNA-binding response regulator K07668 vicR; two-component system, OmpR family, response regulator VicR D skT53_01440 two-component sensor histidine kinase K14982 ciaH; two-component system, OmpR family, sensor histidine kinase CiaH [EC:2.7.13.3] D skT53_01430 llrF; DNA-binding response regulator K14983 ciaR; two-component system, OmpR family, response regulator CiaR D skT53_27610 lisK; two-component sensor histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3] D skT53_27620 lisR; DNA-binding response regulator K18941 arlR; two-component system, OmpR family, response regulator ArlR D skT53_31790 hypothetical protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D skT53_28270 degS; signal transduction histidine-protein kinase/phosphatase DegS K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3] D skT53_28280 degU; transcriptional regulatory protein DegU K07692 degU; two-component system, NarL family, response regulator DegU D skT53_01740 histidine kinase K07683 nreB; two-component system, NarL family, sensor histidine kinase NreB [EC:2.7.13.3] D skT53_01750 DNA-binding response regulator K07696 nreC; two-component system, NarL family, response regulator NreC D skT53_21730 hypothetical protein K13533 kinE; two-component system, sporulation sensor kinase E [EC:2.7.13.3] D skT53_29860 hypothetical protein K13533 kinE; two-component system, sporulation sensor kinase E [EC:2.7.13.3] D skT53_26280 response regulator K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F D skT53_08870 spo0A; stage 0 sporulation protein A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A D skT53_13890 histidine kinase K11691 K11691; two-component system, CitB family, sensor histidine kinase DctS [EC:2.7.13.3] D skT53_13900 response regulator K11692 K11692; two-component system, CitB family, response regulator DctR D skT53_22470 lytS; sensor protein LytS K07704 lytS; two-component system, LytTR family, sensor histidine kinase LytS [EC:2.7.13.3] D skT53_22480 DNA-binding response regulator K07705 lytT; two-component system, LytTR family, response regulator LytT D skT53_32520 sensor histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D skT53_34200 hypothetical protein K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D skT53_34210 atoC; acetoacetate metabolism regulatory protein AtoC K02481 flgR; two-component system, NtrC family, response regulator D skT53_02670 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D skT53_02570 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D skT53_21790 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D skT53_29100 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D skT53_02660 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D skT53_22710 response regulator K11443 divK; two-component system, cell cycle response regulator DivK D skT53_11390 sensor histidine kinase K07717 glnK; two-component system, sensor histidine kinase GlnK [EC:2.7.13.3] D skT53_11380 transcriptional regulator K07719 glnL; two-component system, response regulator GlnL D skT53_05800 DNA-binding response regulator K07720 yesN; two-component system, response regulator YesN D skT53_32200 DNA-binding response regulator K07720 yesN; two-component system, response regulator YesN D skT53_02060 hypothetical protein K22010 pdtaR; two-component system, response regulator PdtaR C 02035 Bacterial motility proteins [BR:eff02035] D skT53_02670 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D skT53_02680 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D skT53_17240 cheW1; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D skT53_21800 cheX; CheY-P phosphatase CheX K03409 cheX; chemotaxis protein CheX D skT53_02690 cheC44H; CheY-P-specific phosphatase CheC K03410 cheC; chemotaxis protein CheC D skT53_02700 cheD; chemoreceptor glutamine deamidase CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D skT53_03730 cheR; chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D skT53_02660 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D skT53_02570 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D skT53_21790 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D skT53_29100 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D skT53_00860 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D skT53_08510 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D skT53_14020 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D skT53_15330 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D skT53_18690 mcpA; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D skT53_20600 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D skT53_21820 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D skT53_25670 tlpC; methyl-accepting chemotaxis protein TlpC K03406 mcp; methyl-accepting chemotaxis protein D skT53_28340 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D skT53_29400 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D skT53_31300 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D skT53_33170 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D skT53_02450 hypothetical protein K02411 fliH; flagellar assembly protein FliH D skT53_02460 EscN/YscN/HrcN family type III secretion system ATPase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D skT53_02470 hypothetical protein K02413 fliJ; flagellar protein FliJ D skT53_34220 hypothetical protein K02413 fliJ; flagellar protein FliJ D skT53_02580 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ D skT53_02590 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D skT53_02600 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D skT53_02610 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D skT53_02630 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D skT53_02620 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D skT53_02440 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D skT53_02550 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D skT53_02560 flagellar motor switch phosphatase FliY K02417 fliN; flagellar motor switch protein FliN D skT53_02430 fliF; flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF D skT53_02540 hypothetical protein K02415 fliL; flagellar protein FliL D skT53_02420 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D skT53_02490 hypothetical protein K02414 fliK; flagellar hook-length control protein FliK D skT53_02400 flagellar basal body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D skT53_02410 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D skT53_02500 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD D skT53_27300 flgG1; flagellar basal body protein K02391 flgF; flagellar basal-body rod protein FlgF D skT53_27310 flgG2; flagellar basal body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D skT53_02520 flgG; flagellar basal-body rod protein FlgG K02390 flgE; flagellar hook protein FlgE D skT53_28490 flgK; flagellar hook-associated protein 1 K02396 flgK; flagellar hook-associated protein 1 D skT53_28500 flgL; flagellar hook-associated protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL D skT53_28540 flagellin K02406 fliC; flagellin D skT53_28560 hypothetical protein K02407 fliD; flagellar hook-associated protein 2 D skT53_28610 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D skT53_02720 RNA polymerase sigma factor K02405 fliA; RNA polymerase sigma factor FliA D skT53_29020 motility protein A K02556 motA; chemotaxis protein MotA D skT53_29890 flagellar motor protein MotA K02556 motA; chemotaxis protein MotA D skT53_29030 hypothetical protein K02557 motB; chemotaxis protein MotB D skT53_29880 flagellar motor protein MotB K02557 motB; chemotaxis protein MotB D skT53_28520 fliW; flagellar assembly factor FliW K13626 fliW; flagellar assembly factor FliW D skT53_28470 hypothetical protein K02398 flgM; negative regulator of flagellin synthesis FlgM D skT53_28550 hypothetical protein K06603 flaG; flagellar protein FlaG D skT53_02530 hypothetical protein K02385 flbD; flagellar protein FlbD D skT53_02640 flagellar biosynthesis protein FlhF K02404 flhF; flagellar biosynthesis protein FlhF D skT53_02650 flhG; site-determining protein K04562 flhG; flagellar biosynthesis protein FlhG D skT53_10790 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D skT53_16020 hypothetical protein K02651 flp; pilus assembly protein Flp/PilA D skT53_31540 hypothetical protein K02651 flp; pilus assembly protein Flp/PilA D skT53_16080 hypothetical protein K02279 cpaB; pilus assembly protein CpaB D skT53_31490 hypothetical protein K02279 cpaB; pilus assembly protein CpaB D skT53_16060 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D skT53_31510 secretory protein kinase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:eff04812] D skT53_15840 hypothetical protein K06990 MEMO1; MEMO1 family protein D skT53_00580 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D skT53_27290 mbl; MreB-like protein K03569 mreB; rod shape-determining protein MreB and related proteins D skT53_12680 hypothetical protein K18640 parM; plasmid segregation protein ParM D skT53_10500 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D skT53_10510 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D skT53_00620 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D skT53_00630 minD; site-determining protein K03609 minD; septum site-determining protein MinD D skT53_24660 soj; sporulation initiation inhibitor protein Soj K03496 parA; chromosome partitioning protein D skT53_24650 noc; nucleoid occlusion protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D skT53_24670 spo0J; stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:eff04147] D skT53_19260 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D skT53_19300 gapA; glyceraldehyde-3-phosphate dehydrogenase 1 K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D skT53_19290 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D skT53_30080 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D skT53_07260 peptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D skT53_05100 peroxiredoxin K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24] D skT53_35640 ykuU; thioredoxin-like protein YkuU K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24] D skT53_21590 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D skT53_35900 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D skT53_17820 pgi_1; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D skT53_30700 pgi_2; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D skT53_24460 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D skT53_23260 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D skT53_16660 putative HIT-like protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D skT53_04380 lcfA_1; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_04720 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_05070 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_09440 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_13320 hypothetical protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_18290 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_19690 lcfA_2; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_29580 ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D skT53_04310 thl_1; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_11210 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_12300 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_18240 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_26210 mmgA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_27020 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_29940 thl_2; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D skT53_21870 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D skT53_23030 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D skT53_31220 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D skT53_28950 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D skT53_28940 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D skT53_04980 hypothetical protein K00864 glpK; glycerol kinase [EC:2.7.1.30] D skT53_07000 hypothetical protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D skT53_07010 hypothetical protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D skT53_07030 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D skT53_00360 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D skT53_08590 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D skT53_25780 dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D skT53_21340 purH; bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D skT53_00820 pdhD; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D skT53_04560 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D skT53_15900 etfA_1; electron transfer flavoprotein subunit alpha K03522 fixB; electron transfer flavoprotein alpha subunit D skT53_17120 etfA_2; electron transfer flavoprotein subunit alpha K03522 fixB; electron transfer flavoprotein alpha subunit D skT53_17510 etfA_3; electron transfer flavoprotein subunit alpha K03522 fixB; electron transfer flavoprotein alpha subunit D skT53_30670 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D skT53_19280 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 02048 Prokaryotic defense system [BR:eff02048] D skT53_20760 cas1; CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 D skT53_20750 cas2; CRISPR-associated endoribonuclease Cas2 K09951 cas2; CRISPR-associated protein Cas2 D skT53_20810 CRISPR-associated helicase/endonuclease Cas3 K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D skT53_20770 CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D skT53_20790 type I-C CRISPR-associated protein Cas8c/Csd1 K19117 csd1; CRISPR-associated protein Csd1 D skT53_20780 type I-C CRISPR-associated protein Cas7/Csd2 K19118 csd2; CRISPR-associated protein Csd2 D skT53_20800 type I-C CRISPR-associated protein Cas5 K19119 cas5d; CRISPR-associated protein Cas5d D skT53_14650 hypothetical protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D skT53_14660 hypothetical protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D skT53_17970 DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D skT53_26570 hypothetical protein K01156 res; type III restriction enzyme [EC:3.1.21.5] D skT53_26560 hypothetical protein K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D skT53_22000 mRNA interferase K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D skT53_27540 mRNA-degrading endonuclease K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D skT53_27550 multidrug transporter MatE K07172 mazE; antitoxin MazE D skT53_22010 ndoAI; antitoxin EndoAI K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI D skT53_27530 hypothetical protein K06218 relE; mRNA interferase RelE/StbE D skT53_25550 hypothetical protein K07341 doc; death on curing protein D skT53_10500 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D skT53_00580 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D skT53_27290 mbl; MreB-like protein K03569 mreB; rod shape-determining protein MreB and related proteins D skT53_22660 hypothetical protein K19167 abiQ; protein AbiQ D skT53_12870 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D skT53_13230 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D skT53_34310 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D skT53_18400 hypothetical protein K19169 dndB; DNA sulfur modification protein DndB C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes [BR:eff01504] D skT53_04450 hypothetical protein K17882 aadD; kanamycin nucleotidyltransferase [EC:2.7.7.-] D skT53_00920 MFS transporter K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein D skT53_33210 yodJ; putative carboxypeptidase YodJ K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:eff00537] D skT53_07260 peptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:eff03100] D skT53_t00250 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D skT53_t00460 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D skT53_t00520 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D skT53_t00720 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D skT53_t00260 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D skT53_t00470 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D skT53_t00620 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D skT53_t00770 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D skT53_t00010 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D skT53_t00140 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D skT53_t00240 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D skT53_t00450 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D skT53_t00160 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D skT53_t00190 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D skT53_t00400 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D skT53_t00120 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D skT53_t00830 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D skT53_t00350 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D skT53_t00580 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D skT53_t00710 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D skT53_t00800 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D skT53_t00220 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D skT53_t00430 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D skT53_t00610 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D skT53_t00130 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D skT53_t00280 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D skT53_t00490 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D skT53_t00630 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D skT53_t00700 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D skT53_t00300 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D skT53_t00670 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D skT53_t00050 tRNA-His K14226 tRNA-His; tRNA His D skT53_t00110 tRNA-His K14226 tRNA-His; tRNA His D skT53_t00590 tRNA-His K14226 tRNA-His; tRNA His D skT53_t00530 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D skT53_t00540 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D skT53_t00730 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D skT53_t00330 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D skT53_t00560 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D skT53_t00340 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D skT53_t00570 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D skT53_t00080 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D skT53_t00060 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D skT53_t00290 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D skT53_t00500 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D skT53_t00640 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D skT53_t00790 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D skT53_t00200 tRNA-Met K14230 tRNA-Met; tRNA Met D skT53_t00410 tRNA-Met K14230 tRNA-Met; tRNA Met D skT53_t00690 tRNA-Met K14230 tRNA-Met; tRNA Met D skT53_t00390 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D skT53_t00810 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D skT53_t00070 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D skT53_t00750 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D skT53_t00170 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D skT53_t00780 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D skT53_t00310 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D skT53_t00380 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D skT53_t00230 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D skT53_t00440 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D skT53_t00740 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D skT53_t00020 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D skT53_t00100 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D skT53_t00040 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D skT53_t00370 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D skT53_t00850 tRNA-Val K14237 tRNA-Val; tRNA Val D skT53_t00090 tRNA-Val K14237 tRNA-Val; tRNA Val D skT53_t00150 tRNA-Val K14237 tRNA-Val; tRNA Val D skT53_t00210 tRNA-Val K14237 tRNA-Val; tRNA Val D skT53_t00420 tRNA-Val K14237 tRNA-Val; tRNA Val D skT53_t00510 tRNA-Sec K14238 tRNA-Sec; tRNA Sec D skT53_r00020 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D skT53_r00170 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D skT53_r00030 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D skT53_18870 hypothetical protein K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346] D skT53_12510 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase K22024 pdxA2; 4-phospho-D-threonate 3-dehydrogenase / 4-phospho-D-erythronate 3-dehydrogenase [EC:1.1.1.408 1.1.1.409] D skT53_12590 alcohol dehydrogenase K19954 adh1; alcohol dehydrogenase [EC:1.1.1.-] D skT53_31250 yugJ; putative NADH-dependent butanol dehydrogenase 1 K19955 adh2; alcohol dehydrogenase [EC:1.1.1.-] D skT53_04830 aldo/keto reductase K23107 yajO; 1-deoxyxylulose-5-phosphate synthase [EC:1.1.-.-] D skT53_34800 shikimate 5-dehydrogenase K14330 K14330; fatty aldehyde-generating acyl-ACP reductase [EC:1.2.1.80] D skT53_06240 aldehyde dehydrogenase K23463 tgnC; (Z)-2-((N-methylformamido)methylene)-5-hydroxybutyrolactone dehydrogenase [EC:1.2.1.-] D skT53_13070 xdhC1; (2Fe-2S)-binding protein K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3] D skT53_20280 hypothetical protein K06137 pqqC; pyrroloquinoline-quinone synthase [EC:1.3.3.11] D skT53_29770 hypothetical protein K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40] D skT53_15890 fixC; protein FixC K00313 fixC; electron transfer flavoprotein-quinone oxidoreductase [EC:1.5.5.-] D skT53_06330 hypothetical protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D skT53_17410 qor; quinone oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D skT53_20500 alcohol dehydrogenase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D skT53_31620 oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D skT53_04500 yfmJ; putative NADP-dependent oxidoreductase YfmJ K00359 qorA; NADPH:quinone reductase [EC:1.6.5.5] D skT53_16780 nitronate monooxygenase K23948 E1.6.5.9; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D skT53_25290 namA_1; NADPH dehydrogenase K00354 E1.6.99.1; NADPH2 dehydrogenase [EC:1.6.99.1] D skT53_35270 namA_2; NADPH dehydrogenase K00354 E1.6.99.1; NADPH2 dehydrogenase [EC:1.6.99.1] D skT53_32900 azoR2; FMN-dependent NADH-azoreductase 2 K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17] D skT53_32540 hypothetical protein K19713 tsdA; thiosulfate dehydrogenase [EC:1.8.2.2] D skT53_16720 msrA; peptide-methionine (R)-S-oxide reductase K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12] D skT53_18890 peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D skT53_24870 hypothetical protein K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D skT53_35540 hypothetical protein K24120 ahpE; mycoredoxin-dependent peroxiredoxin [EC:1.11.1.29] D skT53_22310 quercetin 2,3-dioxygenase K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D skT53_32960 hypothetical protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D skT53_22360 hmp; flavohemoprotein K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17] D skT53_22590 merA; mercuric reductase K00520 merA; mercuric reductase [EC:1.16.1.1] D skT53_09000 ferredoxin--NADP reductase K21567 fnr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D skT53_29730 D-glycerate dehydrogenase K18916 ptxD; phosphonate dehydrogenase [EC:1.20.1.1] D skT53_13170 arsC; protein ArsC K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D skT53_13190 hypothetical protein K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D skT53_12230 hypothetical protein K15976 K15976; putative NAD(P)H nitroreductase [EC:1.-.-.-] D skT53_18580 RNA methyltransferase K07444 ypsC; putative N6-adenine-specific DNA methylase [EC:2.1.1.-] D skT53_08460 hypothetical protein K22441 paiA; diamine N-acetyltransferase [EC:2.3.1.57] D skT53_34690 acuA; acetoin utilization protein AcuA K04766 acuA; acetoin utilization protein AcuA [EC:2.3.1.-] D skT53_12480 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate carboxylase K06898 larB; pyridinium-3,5-biscarboxylic acid mononucleotide synthase [EC:2.5.1.143] D skT53_15300 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D skT53_20360 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D skT53_33510 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D skT53_10140 FAD:protein FMN transferase K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D skT53_15460 hypothetical protein K10710 frlD; fructoselysine 6-kinase [EC:2.7.1.218] D skT53_12540 Hrp-dependent type III effector protein K22129 dtnK; D-threonate/D-erythronate kinase [EC:2.7.1.219 2.7.1.220] D skT53_01180 yloV; hypothetical protein K07030 fakA; fatty acid kinase [EC:2.7.2.18] D skT53_11940 yqfL; putative pyruvate, phosphate dikinase regulatory protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D skT53_15590 hypothetical protein K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49] D skT53_25750 hypothetical protein K18967 dge1; diguanylate cyclase [EC:2.7.7.65] D skT53_23510 disA; DNA integrity scanning protein DisA K07067 disA; diadenylate cyclase [EC:2.7.7.85] D skT53_22740 membrane protein K18672 dacA; diadenylate cyclase [EC:2.7.7.85] D skT53_32910 hypothetical protein K18672 dacA; diadenylate cyclase [EC:2.7.7.85] D skT53_07990 spoIIAB; anti-sigma F factor K06379 spoIIAB; stage II sporulation protein AB (anti-sigma F factor) [EC:2.7.11.1] D skT53_29120 hprK; HPr kinase/phosphorylase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-] D skT53_23540 mcsB; protein-arginine kinase K19405 mcsB; protein arginine kinase [EC:2.7.14.1] D skT53_35310 CoA transferase K18313 sct; succinyl-CoA---D-citramalate CoA-transferase [EC:2.8.3.20] D skT53_19240 est; carboxylesterase K03928 yvaK; carboxylesterase [EC:3.1.1.1] D skT53_04460 hypothetical protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D skT53_30090 acyl-CoA thioester hydrolase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D skT53_23790 spoIIE; stage II sporulation protein E K06382 spoIIE; stage II sporulation protein E [EC:3.1.3.16] D skT53_31390 tyrosine protein phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48] D skT53_27890 phosphatase K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] D skT53_35390 hypothetical protein K07015 yqeG; putative phosphatase [EC:3.1.3.-] D skT53_12050 HD family phosphohydrolase K07037 pgpH; cyclic-di-AMP phosphodiesterase PgpH [EC:3.1.4.-] D skT53_08570 hypothetical protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D skT53_24150 yabD; putative metal-dependent hydrolase YabD K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D skT53_24140 rnmV; ribonuclease M5 K05985 rnmV; ribonuclease M5 [EC:3.1.26.8] D skT53_08790 hypothetical protein K01174 nuc; micrococcal nuclease [EC:3.1.31.1] D skT53_17310 yaaH; spore germination protein YaaH K06306 sleL; cortical fragment-lytic enzyme [EC:3.2.1.-] D skT53_14240 hypothetical protein K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D skT53_01080 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D skT53_33990 hypothetical protein K01462 PDF; peptide deformylase [EC:3.5.1.88] D skT53_08740 hypothetical protein K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D skT53_19130 hypothetical protein K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D skT53_20230 hypothetical protein K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D skT53_27640 hypothetical protein K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D skT53_29690 hypothetical protein K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D skT53_30570 hypothetical protein K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D skT53_05000 delta-lactam-biosynthetic de-N-acetylase K01567 pdaA; peptidoglycan-N-acetylmuramic acid deacetylase [EC:3.5.1.-] D skT53_24000 yabJ; 2-iminobutanoate/2-iminopropanoate deaminase K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D skT53_21530 yeaC; hypothetical protein K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D skT53_26510 ywlE; protein-arginine-phosphatase K20201 ywlE; protein arginine phosphatase [EC:3.9.1.2] D skT53_14990 splB; spore photoproduct lyase K03716 splB; spore photoproduct lyase [EC:4.1.99.14] D skT53_18410 nnr; bifunctional NAD(P)H-hydrate repair enzyme Nnr K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D skT53_00210 sqhC; squalene--hopene cyclase K18115 sqhC; sporulenol synthase [EC:4.2.1.137] D skT53_12490 7-cyano-7-deazaguanine synthase K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37] D skT53_12460 UPF0272 protein K09121 larC; pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel chelatase [EC:4.99.1.12] D skT53_15690 mcm; Fused isobutyryl-CoA mutase K11942 icmF; isobutyryl-CoA mutase [EC:5.4.99.13] D skT53_12310 caiC; putative crotonobetaine/carnitine-CoA ligase K02182 caiC; carnitine-CoA ligase [EC:6.2.1.48] D skT53_24040 cyanophycin synthetase K03802 cphA; cyanophycin synthetase [EC:6.3.2.29 6.3.2.30] D skT53_16350 acetone carboxylase subunit alpha K10854 acxB; acetone carboxylase, alpha subunit [EC:6.4.1.6] D skT53_16360 acetone carboxylase subunit beta K10855 acxA; acetone carboxylase, beta subunit [EC:6.4.1.6] D skT53_16340 acetone carboxylase subunit gamma K10856 acxC; acetone carboxylase, gamma subunit [EC:6.4.1.6] D skT53_01000 yloB; calcium-transporting ATPase K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D skT53_33600 calcium-transporting P-type ATPase, PMR1-type K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D skT53_33620 cation-transporting P-type ATPase K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D skT53_33630 calcium-transporting P-type ATPase, PMR1-type K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] C 99981 Carbohydrate metabolism D skT53_29330 phosphocarrier protein HPr K11184 chr; catabolite repression HPr-like protein D skT53_34680 acetoin utilization protein AcuB K04767 acuB; acetoin utilization protein AcuB D skT53_34670 acuC; acetoin utilization protein AcuC K04768 acuC; acetoin utilization protein AcuC D skT53_04800 lutA; lactate utilization protein A K18928 lldE; L-lactate dehydrogenase complex protein LldE D skT53_26100 Fe-S oxidoreductase K18928 lldE; L-lactate dehydrogenase complex protein LldE D skT53_04810 lutB; lactate utilization protein B K18929 lldF; L-lactate dehydrogenase complex protein LldF D skT53_26110 iron-sulfur cluster-binding protein K18929 lldF; L-lactate dehydrogenase complex protein LldF D skT53_04820 lutC; lactate utilization protein C K00782 lldG; L-lactate dehydrogenase complex protein LldG D skT53_26120 lactate utilization protein C K00782 lldG; L-lactate dehydrogenase complex protein LldG D skT53_05760 pduG; diol dehydratase reactivase subunit alpha K27264 pduG; propanediol dehydratase-reactivating factor large subunit D skT53_05770 pduH protein K27265 pduH; propanediol dehydratase-reactivating factor small subunit C 99982 Energy metabolism D skT53_16800 alcohol dehydrogenase K13955 yogA; zinc-binding alcohol dehydrogenase/oxidoreductase D skT53_11450 fdhD_1; sulfurtransferase FdhD K02379 fdhD; FdhD protein D skT53_13630 fdhD_2; sulfurtransferase FdhD K02379 fdhD; FdhD protein D skT53_32030 fdhD_3; sulfurtransferase FdhD K02379 fdhD; FdhD protein D skT53_07090 fer; ferredoxin K05337 fer; ferredoxin D skT53_08700 hypothetical protein K12263 cccB; cytochrome c551 D skT53_20430 iron-sulfur cluster assembly scaffold protein NifU K04488 iscU; nitrogen fixation protein NifU and related proteins D skT53_17530 tricarballylate dehydrogenase K13796 cobZ; tricarballylate dehydrogenase D skT53_26050 yojN; hypothetical protein K04748 norQ; nitric oxide reductase NorQ protein D skT53_15910 fixA; protein FixA K03521 fixA; electron transfer flavoprotein beta subunit D skT53_17130 electron transfer flavoprotein subunit beta K03521 fixA; electron transfer flavoprotein beta subunit D skT53_17520 etfB; electron transfer flavoprotein subunit beta K03521 fixA; electron transfer flavoprotein beta subunit D skT53_15880 ferredoxin K03855 fixX; ferredoxin like protein C 99983 Lipid metabolism D skT53_28440 hypothetical protein K25232 fakB; fatty acid kinase fatty acid binding subunit C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D skT53_20300 hypothetical protein K08234 yaeR; glyoxylase I family protein D skT53_10440 UPF0001 protein K06997 yggS; PLP dependent protein C 99986 Glycan metabolism D skT53_00460 hypothetical protein K08992 lapA; lipopolysaccharide assembly protein A D skT53_18110 hypothetical protein K07027 K07027; glycosyltransferase 2 family protein D skT53_05190 cwlJ; cell wall hydrolase CwlJ K01449 cwlJ; cell wall hydrolase D skT53_34610 hypothetical protein K01449 cwlJ; cell wall hydrolase C 99987 Cofactor metabolism D skT53_01580 ABC transporter K03688 ubiB; ubiquinone biosynthesis protein D skT53_21630 hypothetical protein K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein C 99988 Secondary metabolism C 99999 Others D skT53_18610 oxidoreductase K15977 K15977; putative oxidoreductase D skT53_22280 hypothetical protein K15977 K15977; putative oxidoreductase D skT53_22300 oxidoreductase K15977 K15977; putative oxidoreductase B B 09192 Unclassified: genetic information processing C 99973 Transcription D skT53_03250 cspC; cold shock-like protein CspC K03704 cspA; cold shock protein D skT53_24850 cspA; cold-shock protein K03704 cspA; cold shock protein D skT53_25340 cspLB; cold shock-like protein CspLB K03704 cspA; cold shock protein D skT53_33300 csp; cold-shock protein K03704 cspA; cold shock protein D skT53_14850 antirepressor K07741 antB; anti-repressor protein D skT53_21830 RNA-binding transcriptional accessory protein K06959 tex; protein Tex D skT53_01030 UPF0296 protein K09777 remA; extracellular matrix regulatory protein A D skT53_24520 DUF370 domain-containing protein K24648 remB; extracellular matrix regulatory protein B C 99974 Translation D skT53_18450 yugI; general stress protein 13 K07571 K07571; S1 RNA binding domain protein D skT53_23830 yabR; hypothetical protein K07571 K07571; S1 RNA binding domain protein D skT53_15320 hypothetical protein K07576 K07576; metallo-beta-lactamase family protein C 99975 Protein processing D skT53_23550 hypothetical protein K19411 mcsA; protein arginine kinase activator D skT53_35000 tig; trigger factor K03545 tig; trigger factor D skT53_13590 hypothetical protein K02380 fdhE; FdhE protein D skT53_01920 ureF; urease accessory protein UreF K03188 ureF; urease accessory protein D skT53_01930 ureG; urease accessory protein UreG K03189 ureG; urease accessory protein D skT53_01940 hypothetical protein K03190 ureD; urease accessory protein D skT53_19210 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein D skT53_02270 comM; ATP-dependent protease K07391 comM; magnesium chelatase family protein D skT53_07680 resB; cytochrome c biogenesis protein ResB K07399 resB; cytochrome c biogenesis protein D skT53_30350 hypothetical protein K07401 K07401; selenoprotein W-related protein D skT53_12380 hypothetical protein K07402 xdhC; xanthine dehydrogenase accessory factor D skT53_32210 hypothetical protein K07402 xdhC; xanthine dehydrogenase accessory factor D skT53_03340 mecB; adapter protein MecA 2 K16511 mecA1_2; adapter protein MecA 1/2 C 99976 Replication and repair D skT53_00980 IS607 family transposase ISTko1 K07450 K07450; putative resolvase D skT53_20380 IS607 family transposase ISTko1 K07450 K07450; putative resolvase D skT53_24720 IS607 family transposase ISTko1 K07450 K07450; putative resolvase D skT53_32440 IS607 family transposase ISTko1 K07450 K07450; putative resolvase D skT53_33570 IS607 family transposase ISTko1 K07450 K07450; putative resolvase D skT53_35720 IS607 family transposase ISTko1 K07450 K07450; putative resolvase D skT53_00570 ysxA; UPF0758 protein YsxA K03630 radC; DNA repair protein RadC D skT53_17390 DNA recombination protein RmuC K09760 rmuC; DNA recombination protein RmuC D skT53_02210 UPF0102 protein K07460 yraN; putative endonuclease D skT53_34410 hypothetical protein K07461 K07461; putative endonuclease D skT53_02340 DNA processing protein DprA K04096 smf; DNA processing protein D skT53_26020 toprim domain protein K07476 yusF; toprim domain protein D skT53_12900 ATPase AAA K07478 ycaJ; putative ATPase D skT53_08800 transposase K07481 K07481; transposase, IS5 family D skT53_13410 hypothetical protein K07481 K07481; transposase, IS5 family D skT53_32410 transposase K07481 K07481; transposase, IS5 family D skT53_35990 hypothetical protein K07481 K07481; transposase, IS5 family D skT53_00030 transposase K07483 K07483; transposase D skT53_06880 hypothetical protein K07483 K07483; transposase D skT53_26720 hypothetical protein K07483 K07483; transposase D skT53_26810 hypothetical protein K07483 K07483; transposase D skT53_35950 transposase K07483 K07483; transposase D skT53_10770 IS110 family transposase K07486 K07486; transposase D skT53_21570 hypothetical protein K07486 K07486; transposase D skT53_30230 IS110 family transposase K07486 K07486; transposase D skT53_09570 hypothetical protein K07491 rayT; REP-associated tyrosine transposase D skT53_09580 hypothetical protein K07491 rayT; REP-associated tyrosine transposase D skT53_00970 transposase K07496 K07496; putative transposase D skT53_24730 transposase K07496 K07496; putative transposase D skT53_28330 hypothetical protein K07496 K07496; putative transposase D skT53_32980 tlpB; transposase K07496 K07496; putative transposase D skT53_33580 transposase K07496 K07496; putative transposase D skT53_35730 transposase K07496 K07496; putative transposase D skT53_26730 hypothetical protein K07497 K07497; putative transposase D skT53_26780 hypothetical protein K07497 K07497; putative transposase D skT53_26800 hypothetical protein K07497 K07497; putative transposase D skT53_35960 hypothetical protein K07497 K07497; putative transposase D skT53_14950 hypothetical protein K14059 int; integrase C 99979 Viral proteins C 99998 Others D skT53_33230 pspA; phage shock protein A K03969 pspA; phage shock protein A D skT53_24310 nucleoid-associated protein K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D skT53_27990 multidrug ABC transporter K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family D skT53_28410 anion permease K03306 TC.PIT; inorganic phosphate transporter, PiT family D skT53_16200 sodium transporter K03453 TC.BASS; bile acid:Na+ symporter, BASS family D skT53_23900 spoVB_1; stage V sporulation protein B K03328 TC.PST; polysaccharide transporter, PST family C 99978 Cell growth D skT53_01660 hypothetical protein K07322 ytfE; regulator of cell morphogenesis and NO signaling D skT53_24280 hypothetical protein K06317 bofA; inhibitor of the pro-sigma K processing machinery D skT53_33140 hypothetical protein K06325 cotB; spore coat protein B D skT53_07220 cotE; spore coat protein E K06328 cotE; spore coat protein E D skT53_34710 hypothetical protein K06329 cotF; spore coat protein F D skT53_34720 hypothetical protein K06329 cotF; spore coat protein F D skT53_33100 cotH; inner spore coat protein H K06330 cotH; spore coat protein H D skT53_34530 hypothetical protein K06332 cotJA; spore coat protein JA D skT53_34520 cotJB; spore coat protein CotJB K06333 cotJB; spore coat protein JB D skT53_34510 hypothetical protein K06334 cotJC; spore coat protein JC D skT53_24610 DNA-binding protein K06346 jag; spoIIIJ-associated protein D skT53_22820 kbaA; KinB-signaling pathway activation protein K06349 kbaA; KinB signaling pathway activation protein D skT53_12190 kipA; KipI antagonist K06350 kipA; antagonist of KipI D skT53_12200 kipI; kinase A inhibitor K06351 kipI; inhibitor of KinA D skT53_31020 hypothetical protein K06370 safA; morphogenetic protein associated with SpoVID D skT53_30410 hypothetical protein K06371 sda; developmental checkpoint coupling sporulation initiation to replication initiation D skT53_31310 hypothetical protein K06371 sda; developmental checkpoint coupling sporulation initiation to replication initiation D skT53_07720 spmA; spore maturation protein A K06373 spmA; spore maturation protein A D skT53_07710 spmB; spore maturation protein B K06374 spmB; spore maturation protein B D skT53_08000 spoIIAA; anti-sigma F factor antagonist K06378 spoIIAA; stage II sporulation protein AA (anti-sigma F factor antagonist) D skT53_08140 spoIIM; stage II sporulation protein M K06384 spoIIM; stage II sporulation protein M D skT53_22800 sporulation protein K06384 spoIIM; stage II sporulation protein M D skT53_35820 spoIIP; stage II sporulation protein P K06385 spoIIP; stage II sporulation protein P D skT53_27270 hypothetical protein K06386 spoIIQ; stage II sporulation protein Q D skT53_26450 hypothetical protein K06387 spoIIR; stage II sporulation protein R D skT53_09150 stage III sporulation protein AA K06390 spoIIIAA; stage III sporulation protein AA D skT53_09140 stage III sporulation protein AB K06391 spoIIIAB; stage III sporulation protein AB D skT53_09130 hypothetical protein K06392 spoIIIAC; stage III sporulation protein AC D skT53_09120 spoIIIAD; stage III sporulation protein AD K06393 spoIIIAD; stage III sporulation protein AD D skT53_09110 spoIIIAE; stage III sporulation protein AE K06394 spoIIIAE; stage III sporulation protein AE D skT53_09100 hypothetical protein K06395 spoIIIAF; stage III sporulation protein AF D skT53_09090 stage III sporulation protein AG K06396 spoIIIAG; stage III sporulation protein AG D skT53_09080 spoIIIAH; stage III sporulation protein AH K06397 spoIIIAH; stage III sporulation protein AH D skT53_03600 spoIVA; stage IV sporulation protein A K06398 spoIVA; stage IV sporulation protein A D skT53_06420 serine recombinase K06400 spoIVCA; site-specific DNA recombinase D skT53_26640 hypothetical protein K06400 spoIVCA; site-specific DNA recombinase D skT53_26690 recombinase RecB K06400 spoIVCA; site-specific DNA recombinase D skT53_00650 hypothetical protein K06401 spoIVFA; stage IV sporulation protein FA D skT53_07970 spoVAC_1; stage V sporulation protein AC K06405 spoVAC; stage V sporulation protein AC D skT53_22140 spoVAC_2; stage V sporulation protein AC K06405 spoVAC; stage V sporulation protein AC D skT53_07960 hypothetical protein K06406 spoVAD; stage V sporulation protein AD D skT53_22130 stage V sporulation protein AD K06406 spoVAD; stage V sporulation protein AD D skT53_07940 spoVAE; stage V sporulation protein AE K06407 spoVAE; stage V sporulation protein AE D skT53_07950 stage V sporulation protein AE K06407 spoVAE; stage V sporulation protein AE D skT53_22120 stage V sporulation protein AE K06407 spoVAE; stage V sporulation protein AE D skT53_07930 spore germination protein K06408 spoVAF; stage V sporulation protein AF D skT53_03040 dpaA; dipicolinate synthase subunit A K06410 spoVFA; dipicolinate synthase subunit A D skT53_03050 dpaB; dipicolinate synthase subunit B K06411 spoVFB; dipicolinate synthase subunit B D skT53_23990 spoVG; putative septation protein SpoVG K06412 spoVG; stage V sporulation protein G D skT53_07080 stage V sporulation protein K K06413 spoVK; stage V sporulation protein K D skT53_08670 stage V sporulation protein K K06413 spoVK; stage V sporulation protein K D skT53_19390 spoVR; stage V sporulation protein R K06415 spoVR; stage V sporulation protein R D skT53_07270 spoVS; stage V sporulation protein S K06416 spoVS; stage V sporulation protein S D skT53_01280 sasP-1; small, acid-soluble spore protein 1 K06418 SASP-A; small acid-soluble spore protein A (major alpha-type SASP) D skT53_19820 hypothetical protein K06418 SASP-A; small acid-soluble spore protein A (major alpha-type SASP) D skT53_26000 sasP; acid-soluble spore protein K06418 SASP-A; small acid-soluble spore protein A (major alpha-type SASP) D skT53_35790 sspA; small acid-soluble spore protein K06421 sspD; small acid-soluble spore protein D (minor alpha/beta-type SASP) D skT53_24060 sspF; protein SspF K06423 sspF; small acid-soluble spore protein F (minor alpha/beta-type SASP) D skT53_24080 sporulation peptidase YabG K06436 yabG; spore coat assemly protein D skT53_12070 sporulation protein YqfD K06438 yqfD; similar to stage IV sporulation protein D skT53_22400 yraF; spore coat protein F-like protein YraF K06439 yraD; similar to spore coat protein D skT53_25490 yraD; spore coat protein F-like protein YraD K06439 yraD; similar to spore coat protein D skT53_22410 yraG_1; spore coat protein F-like protein YraG K06440 yraG; similar to spore coat protein D skT53_25480 yraG_2; spore coat protein F-like protein YraG K06440 yraG; similar to spore coat protein D skT53_22830 germination protein GerD K06294 gerD; spore germination protein D D skT53_19640 spore germination protein K06295 gerKA; spore germination protein KA D skT53_22860 spore germination protein K06295 gerKA; spore germination protein KA D skT53_19620 hypothetical protein K06297 gerKC; spore germination protein KC D skT53_22870 gerKC; spore germination protein KC K06297 gerKC; spore germination protein KC D skT53_34970 gerM; spore germination protein GerM K06298 gerM; germination protein M D skT53_16510 gerPA; putative spore germination protein GerPA K06299 gerPA; spore germination protein PA D skT53_16520 hypothetical protein K06299 gerPA; spore germination protein PA D skT53_16540 hypothetical protein K06302 gerPD; spore germination protein PD D skT53_30720 hypothetical protein K06304 gerPF; spore germination protein PF D skT53_26060 hypothetical protein K06305 gerQ; spore germination protein Q D skT53_08550 yfkQ; putative membrane protein YfkQ K06307 yfkQ; spore germination protein D skT53_08540 yfkR; putative spore germination protein YfkR K06308 yfkR; spore germination protein D skT53_08520 yfkT; putative spore germination protein YfkT K06309 yfkT; spore germination protein D skT53_18190 yndD; putative membrane protein YndD K06310 yndD; spore germination protein D skT53_18180 yndF; spore germination protein YndF K06312 yndF; spore germination protein D skT53_03440 germination protein YpeB K06313 ypeB; spore germination protein C 99993 Cell motility C 99995 Signaling proteins D skT53_07570 carbon starvation protein A K06200 cstA; carbon starvation protein D skT53_11540 GTP-binding protein K06207 typA; GTP-binding protein D skT53_16300 UPF0237 protein K07166 K07166; ACT domain-containing protein D skT53_12060 phosphate starvation protein PhoH K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D skT53_19410 prkA; protein PrkA K07180 prkA; serine protein kinase D skT53_02090 hypothetical protein K07182 K07182; CBS domain-containing protein D skT53_07370 YajQ family cyclic di-GMP-binding protein K09767 yajQ; cyclic-di-GMP-binding protein C 99992 Structural proteins D skT53_25300 hypothetical protein K02005 ABC.CD.TX; HlyD family secretion protein D skT53_27980 secretion protein HlyD K02005 ABC.CD.TX; HlyD family secretion protein D skT53_00320 cytochrome c assembly protein K02497 hemX; HemX protein D skT53_07380 XRE family transcriptional regulator K15539 rodZ; cytoskeleton protein RodZ C 99994 Others D skT53_28390 phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein D skT53_05430 phnK; ABC transporter ATP-binding protein K05781 phnK; putative phosphonate transport system ATP-binding protein D skT53_13560 moeA2; LysR family transcriptional regulator K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D skT53_21040 hypothetical protein K07219 K07219; putative molybdopterin biosynthesis protein D skT53_10330 hypothetical protein K26996 sdpI; immunity protein, SdpI family B B 09194 Poorly characterized C 99996 General function prediction only D skT53_06300 yprA; putative ATP-dependent helicase YprA K06877 K06877; DEAD/DEAH box helicase domain-containing protein D skT53_20140 csaA; putative chaperone CsaA K06878 K06878; tRNA-binding protein D skT53_20220 hypothetical protein K06886 glbN; hemoglobin D skT53_01230 esterase K07001 K07001; NTE family protein D skT53_18120 hypothetical protein K07001 K07001; NTE family protein D skT53_28320 hypothetical protein K07001 K07001; NTE family protein D skT53_11560 haloacid dehalogenase K07025 K07025; putative hydrolase of the HAD superfamily D skT53_19950 hypothetical protein K15724 erpA; iron-sulfur cluster insertion protein D skT53_20420 sufB; Fe-S cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB D skT53_20450 sufD; FeS cluster assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD D skT53_22170 yfhP; hypothetical protein K07038 K07038; inner membrane protein D skT53_13380 phosphotriesterase K07048 PTER; phosphotriesterase-related protein D skT53_30100 hypothetical protein K07113 fxsA; UPF0716 protein FxsA D skT53_35570 hypothetical protein K07143 K07143; UPF0148 protein D skT53_25690 ybfQ; UPF0176 protein YbfQ K07146 K07146; UPF0176 protein D skT53_06800 hypothetical protein K11477 glcG; glc operon protein GlcG D skT53_03290 ydcK; protein SprT K03095 sprL; SprT-like protein D skT53_32990 alkaline phosphatase K03975 dedA; membrane-associated protein D skT53_30830 membrane protein K08972 K08972; putative membrane protein C 99997 Function unknown D skT53_15070 HD domain-containing protein K06885 K06885; uncharacterized protein D skT53_17920 thioredoxin domain-containing protein K06888 K06888; uncharacterized protein D skT53_19940 hypothetical protein K06890 K06890; uncharacterized protein D skT53_07630 yneT; hypothetical protein K06929 K06929; uncharacterized protein D skT53_01500 UPF0109 protein K06960 K06960; uncharacterized protein D skT53_23420 yacP; hypothetical protein K06962 K06962; uncharacterized protein D skT53_17200 yugP_1; putative membrane protease YugP K06973 K06973; uncharacterized protein D skT53_18980 yugP_2; putative membrane protease YugP K06973 K06973; uncharacterized protein D skT53_20650 hypothetical protein K06987 K06987; uncharacterized protein D skT53_13830 hypothetical protein K07045 K07045; uncharacterized protein D skT53_18850 amidohydrolase K07045 K07045; uncharacterized protein D skT53_26820 amidohydrolase K07045 K07045; uncharacterized protein D skT53_29930 amidohydrolase K07045 K07045; uncharacterized protein D skT53_12290 hypothetical protein K07068 K07068; uncharacterized protein D skT53_12700 epimerase K07071 K07071; uncharacterized protein D skT53_25370 C4-dicarboxylate ABC transporter substrate-binding protein K07080 K07080; uncharacterized protein D skT53_09740 hypothetical protein K07089 K07089; uncharacterized protein D skT53_32080 hypothetical protein K07089 K07089; uncharacterized protein D skT53_00280 UPF0721 transmembrane protein K07090 K07090; uncharacterized protein D skT53_09880 UPF0721 transmembrane protein K07090 K07090; uncharacterized protein D skT53_10380 hypothetical protein K07090 K07090; uncharacterized protein D skT53_22760 yjnA; UPF0721 transmembrane protein YjnA K07090 K07090; uncharacterized protein D skT53_27860 UPF0721 transmembrane protein K07090 K07090; uncharacterized protein D skT53_32650 UPF0721 transmembrane protein K07090 K07090; uncharacterized protein D skT53_25600 exported alkaline phosphatase K07093 K07093; uncharacterized protein D skT53_19430 phosphoesterase K07095 K07095; uncharacterized protein D skT53_19860 ykoQ; putative metallophosphoesterase YkoQ K07098 K07098; uncharacterized protein D skT53_03280 ser/threonine protein phosphatase K07099 K07099; uncharacterized protein D skT53_13270 transcriptional regulator K07105 K07105; uncharacterized protein D skT53_01610 hypothetical protein K07112 K07112; uncharacterized protein D skT53_26910 hypothetical protein K07120 K07120; uncharacterized protein D skT53_29740 hypothetical protein K07120 K07120; uncharacterized protein D skT53_03230 oxidoreductase K07124 K07124; uncharacterized protein D skT53_18470 FAD-dependent oxidoreductase K07137 K07137; uncharacterized protein D skT53_17560 ytqA; hypothetical protein K07139 K07139; uncharacterized protein D skT53_12890 membrane protein K07149 K07149; uncharacterized protein D skT53_24690 membrane protein K07150 K07150; uncharacterized protein D skT53_12150 hypothetical protein K09005 K09005; uncharacterized protein D skT53_12120 yqeY; hypothetical protein K09117 K09117; uncharacterized protein D skT53_16310 PFL family protein K09157 K09157; uncharacterized protein D skT53_32230 hypothetical protein K09386 K09386; uncharacterized protein D skT53_12820 hypothetical protein K09729 K09729; uncharacterized protein D skT53_00080 polymerase K09749 K09749; uncharacterized protein D skT53_02730 polymerase K09749 K09749; uncharacterized protein D skT53_12720 hypothetical protein K09749 K09749; uncharacterized protein D skT53_30890 hypothetical protein K09763 K09763; uncharacterized protein D skT53_34380 hypothetical protein K09763 K09763; uncharacterized protein D skT53_11550 hypothetical protein K09768 K09768; uncharacterized protein D skT53_24230 yaaR; hypothetical protein K09770 K09770; uncharacterized protein D skT53_15000 membrane protein K09775 K09775; uncharacterized protein D skT53_24120 hypothetical protein K09776 K09776; uncharacterized protein D skT53_19400 yhbH; stress response UPF0229 protein YhbH K09786 K09786; uncharacterized protein D skT53_01470 UPF0122 protein K09787 K09787; uncharacterized protein D skT53_06970 hypothetical protein K09793 K09793; uncharacterized protein D skT53_17160 ybcC; UPF0753 protein YbcC K09822 K09822; uncharacterized protein D skT53_35350 hypothetical protein K09959 K09959; uncharacterized protein D skT53_02220 hypothetical protein K09976 K09976; uncharacterized protein D skT53_03520 yphB; hypothetical protein K05739 seaA; uncharacterized protein D skT53_06290 yprB; hypothetical protein K07502 yprB; uncharacterized protein D skT53_08610 hypothetical protein K07502 yprB; uncharacterized protein D skT53_10110 hypothetical protein K07584 ysxB; uncharacterized protein D skT53_28400 ykaA; hypothetical protein K07220 K07220; uncharacterized protein D skT53_19850 ygaC; UPF0374 protein YgaC K07586 ygaC; uncharacterized protein D skT53_02890 hypothetical protein K07742 ylxR; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 1, 2024