KEGG   DISEASE: Systemic lupus erythematosus
Entry
H00080                      Disease                                
Name
Systemic lupus erythematosus
Description
Systemic lupus erythematosus (SLE) is a prototypic autoimmune disease characterised by the production of IgG autoantibodies that are specific for self-antigens, such as DNA, nuclear proteins and certain cytoplasmic components, in association with a diverse array of clinical manifestations. The primary pathological findings in patients with SLE are those of inflammation, vasculitis, immune complex deposition, and vasculopathy. Immune complexes comprising autoantibody and self-antigen is deposited particularly in the renal glomeruli and mediate a systemic inflammatory response by activating complement or via Fc{gamma}R-mediated neutrophil and macrophage activation. Activation of complement (C5) leads to injury both through formation of the membrane attack complex (C5b-9) or by generation of the anaphylatoxin and cell activator C5a. Neutrophils and macrophages cause tissue injury by the release of oxidants and proteases. It has been reported that there is a relatively high genetic component behind SLE. The data of family-based studies point toward an oligogenic background, with several susceptibility genes (SLEB) acting on disease expression along with environmental factors.
Category
Immune system disease
Brite
Human diseases in ICD-11 classification [BR:br08403]
 04 Diseases of the immune system
  Nonorgan specific systemic autoimmune disorders
   4A40  Lupus erythematosus
    H00080  Systemic lupus erythematosus
Pathway-based classification of diseases [BR:br08402]
 Immune system
  nt06517  TLR signaling
   H00080  Systemic lupus erythematosus
  nt06520  CGAS-STING signaling
   H00080  Systemic lupus erythematosus
  nt06537  TCR/BCR signaling
   H00080  Systemic lupus erythematosus
Disease
pathway
hsa05322  Systemic lupus erythematosus
Pathway
hsa04620 Toll-like receptor signaling pathway   
hsa04623 Cytosolic DNA-sensing pathway   
hsa04660 T cell receptor signaling pathway   
Network
nt06517 TLR signaling
nt06520 CGAS-STING signaling
nt06537 TCR/BCR signaling
Gene
(SLE) PTPN22 [HSA:26191] [KO:K18024]
(SLE) FCGR2A [HSA:2212] [KO:K06472]
(SLE) FCGR2B [HSA:2213] [KO:K12560]
(SLE) CTLA4 [HSA:1493] [KO:K06538]
(SLE) TREX1 [HSA:11277] [KO:K10790]
(SLE) DNASE1 [HSA:1773] [KO:K11994]
(SLEB1) TLR5 [HSA:7100] [KO:K10168]
(SLEB2) PDCD1 [HSA:5133] [KO:K06744]
(SLEB9) CR2 [HSA:1380] [KO:K04012]
(SLEB10) IRF5 [HSA:3663] [KO:K09446]
(SLEB11) STAT4 [HSA:6775] [KO:K11222]
(SLEB16) DNASE1L3 [HSA:1776] [KO:K11995]
(SLEB17) TLR7 [HSA:51284] [KO:K05404]
HLA-DRB1 [HSA:3123] [KO:K06752]
HLA-DQA1 [HSA:3117] [KO:K06752]
HLA-DQB1 [HSA:3119] [KO:K06752]
C2 [HSA:717] [KO:K01332]
C4A [HSA:720] [KO:K03989]
TNF [HSA:7124] [KO:K03156]
FCGR3A [HSA:2214] [KO:K06463]
FCGR3B [HSA:2215] [KO:K06463]
CRP [HSA:1401] [KO:K16143]
ZNF423 [HSA:23090] [KO:K22870]
Drug
Triamcinolone acetonide [DR:D00983]
Dexamethasone [DR:D00292]
Dexamethasone sodium phosphate [DR:D00975]
Hydrocortisone [DR:D00088]
Hydrocortisone sodium succinate [DR:D00978]
Prednisolone [DR:D00472]
Prednisolone sodium phosphate [DR:D00981]
Prednisone [DR:D00473]
Methylprednisolone [DR:D00407]
Methylprednisolone sodium succinate [DR:D00751]
Methylprednisolone acetate [DR:D00979]
Corticotropin [DR:D00146]
Cortisone acetate [DR:D00973]
Belimumab [DR:D03068]
Anifrolumab [DR:D11082]
Hydroxychloroquine sulfate [DR:D02114]
Comment
Autoantigen:
Double-stranded DNA [CPD:C00434]
H2A [HSA:474382]
H2B [HSA:8346]
H3 [HSA:3020]
H4 [HSA:8359]
Ro/SS-A [HSA:6737]
La/SS-B [HSA:6741]
Sm-B [HSA:6628]
Sm-D [HSA:6632]
NR2A [HSA:2903]
NR2B [HSA:2904]
Phosphatidyl-serine [CPD:C02737]
C1q [HSA:712]
Other DBs
ICD-11: 4A40.0
ICD-10: M32
MeSH: D008180
OMIM: 152700 601744 605218 610927 612251 612253 614420 301080
Reference
PMID:15273934 (PTPN22)
  Authors
Kyogoku C, Langefeld CD, Ortmann WA, Lee A, Selby S, Carlton VE, Chang M, Ramos P, Baechler EC, Batliwalla FM, Novitzke J, Williams AH, Gillett C, Rodine P, Graham RR, Ardlie KG, Gaffney PM, Moser KL, Petri M, Begovich AB, Gregersen PK, Behrens TW
  Title
Genetic association of the R620W polymorphism of protein tyrosine phosphatase PTPN22 with human SLE.
  Journal
Am J Hum Genet 75:504-7 (2004)
DOI:10.1086/423790
Reference
PMID:33331924 (FCGR2A)
  Authors
Melki I, Allaeys I, Tessandier N, Mailhot B, Cloutier N, Campbell RA, Rowley JW, Salem D, Zufferey A, Laroche A, Levesque T, Patey N, Rauch J, Lood C, Droit A, McKenzie SE, Machlus KR, Rondina MT, Lacroix S, Fortin PR, Boilard E
  Title
FcgammaRIIA expression accelerates nephritis and increases platelet activation in systemic lupus erythematosus.
  Journal
Blood 136:2933-2945 (2020)
DOI:10.1182/blood.2020004974
Reference
PMID:15895258 (FCGR2B)
  Authors
Blank MC, Stefanescu RN, Masuda E, Marti F, King PD, Redecha PB, Wurzburger RJ, Peterson MG, Tanaka S, Pricop L
  Title
Decreased transcription of the human FCGR2B gene mediated by the -343 G/C promoter polymorphism and association with systemic lupus erythematosus.
  Journal
Hum Genet 117:220-7 (2005)
DOI:10.1007/s00439-005-1302-3
Reference
PMID:15138458 (CTLA4)
  Authors
Barreto M, Santos E, Ferreira R, Fesel C, Fontes MF, Pereira C, Martins B, Andreia R, Viana JF, Crespo F, Vasconcelos C, Ferreira C, Vicente AM
  Title
Evidence for CTLA4 as a susceptibility gene for systemic lupus erythematosus.
  Journal
Eur J Hum Genet 12:620-6 (2004)
DOI:10.1038/sj.ejhg.5201214
Reference
PMID:17660818 (TREX1)
  Authors
Lee-Kirsch MA, Gong M, Chowdhury D, Senenko L, Engel K, Lee YA, de Silva U, Bailey SL, Witte T, Vyse TJ, Kere J, Pfeiffer C, Harvey S, Wong A, Koskenmies S, Hummel O, Rohde K, Schmidt RE, Dominiczak AF, Gahr M, Hollis T, Perrino FW, Lieberman J, Hubner N
  Title
Mutations in the gene encoding the 3'-5' DNA exonuclease TREX1 are associated with systemic lupus erythematosus.
  Journal
Nat Genet 39:1065-7 (2007)
DOI:10.1038/ng2091
Reference
PMID:11479590 (DNASE1)
  Authors
Yasutomo K, Horiuchi T, Kagami S, Tsukamoto H, Hashimura C, Urushihara M, Kuroda Y
  Title
Mutation of DNASE1 in people with systemic lupus erythematosus.
  Journal
Nat Genet 28:313-4 (2001)
DOI:10.1038/91070
Reference
PMID:16027372 (TLR5)
  Authors
Hawn TR, Wu H, Grossman JM, Hahn BH, Tsao BP, Aderem A
  Title
A stop codon polymorphism of Toll-like receptor 5 is associated with resistance to systemic lupus erythematosus.
  Journal
Proc Natl Acad Sci U S A 102:10593-7 (2005)
DOI:10.1073/pnas.0501165102
Reference
PMID:12402038 (PDCD1)
  Authors
Prokunina L, Castillejo-Lopez C, Oberg F, Gunnarsson I, Berg L, Magnusson V, Brookes AJ, Tentler D, Kristjansdottir H, Grondal G, Bolstad AI, Svenungsson E, Lundberg I, Sturfelt G, Jonssen A, Truedsson L, Lima G, Alcocer-Varela J, Jonsson R, Gyllensten UB, Harley JB, Alarcon-Segovia D, Steinsson K, Alarcon-Riquelme ME
  Title
A regulatory polymorphism in PDCD1 is associated with susceptibility to systemic lupus erythematosus in humans.
  Journal
Nat Genet 32:666-9 (2002)
DOI:10.1038/ng1020
Reference
PMID:17360460 (CR2)
  Authors
Wu H, Boackle SA, Hanvivadhanakul P, Ulgiati D, Grossman JM, Lee Y, Shen N, Abraham LJ, Mercer TR, Park E, Hebert LA, Rovin BH, Birmingham DJ, Chang DM, Chen CJ, McCurdy D, Badsha HM, Thong BY, Chng HH, Arnett FC, Wallace DJ, Yu CY, Hahn BH, Cantor RM, Tsao BP
  Title
Association of a common complement receptor 2 haplotype with increased risk of systemic lupus erythematosus.
  Journal
Proc Natl Acad Sci U S A 104:3961-6 (2007)
DOI:10.1073/pnas.0609101104
Reference
PMID:16642019 (IRF5)
  Authors
Graham RR, Kozyrev SV, Baechler EC, Reddy MV, Plenge RM, Bauer JW, Ortmann WA, Koeuth T, Gonzalez Escribano MF, Pons-Estel B, Petri M, Daly M, Gregersen PK, Martin J, Altshuler D, Behrens TW, Alarcon-Riquelme ME
  Title
A common haplotype of interferon regulatory factor 5 (IRF5) regulates splicing and expression and is associated with increased risk of systemic lupus erythematosus.
  Journal
Nat Genet 38:550-5 (2006)
DOI:10.1038/ng1782
Reference
PMID:19109131 (STAT4)
  Authors
Kariuki SN, Kirou KA, MacDermott EJ, Barillas-Arias L, Crow MK, Niewold TB
  Title
Cutting edge: autoimmune disease risk variant of STAT4 confers increased sensitivity to IFN-alpha in lupus patients in vivo.
  Journal
J Immunol 182:34-8 (2009)
DOI:10.4049/jimmunol.182.1.34
Reference
PMID:33173951 (DNASE1L3)
  Authors
Zervou MI, Andreou A, Matalliotakis M, Spandidos DA, Goulielmos GN, Eliopoulos EE
  Title
Association of the DNASE1L3 rs35677470 polymorphism with systemic lupus erythematosus, rheumatoid arthritis and systemic sclerosis: Structural biological insights.
  Journal
Mol Med Rep 22:4492-4498 (2020)
DOI:10.3892/mmr.2020.11547
Reference
PMID:35477763 (TLR7)
  Authors
Brown GJ, Canete PF, Wang H, Medhavy A, Bones J, Roco JA, He Y, Qin Y, Cappello J, Ellyard JI, Bassett K, Shen Q, Burgio G, Zhang Y, Turnbull C, Meng X, Wu P, Cho E, Miosge LA, Andrews TD, Field MA, Tvorogov D, Lopez AF, Babon JJ, Lopez CA, Gonzalez-Murillo A, Garulo DC, Pascual V, Levy T, Mallack EJ, Calame DG, Lotze T, Lupski JR, Ding H, Ullah TR, Walters GD, Koina ME, Cook MC, Shen N, de Lucas Collantes C, Corry B, Gantier MP, Athanasopoulos V, Vinuesa CG
  Title
TLR7 gain-of-function genetic variation causes human lupus.
  Journal
Nature 605:349-356 (2022)
DOI:10.1038/s41586-022-04642-z
Reference
PMID:12835292 (HLA-DRB1, HLA-DQA1, HLA-DQB1)
  Authors
Mok CC, Lau CS.
  Title
Pathogenesis of systemic lupus erythematosus.
  Journal
J Clin Pathol 56:481-90 (2003)
DOI:10.1136/jcp.56.7.481
Reference
PMID:18305268 (HLA-DRB1, C2, C4A, TNF, FCGR3A, FCGR3B, CRP, ZNF423)
  Authors
Rahman A, Isenberg DA.
  Title
Systemic lupus erythematosus.
  Journal
N Engl J Med 358:929-39 (2008)
DOI:10.1056/NEJMra071297
LinkDB

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KEGG   DISEASE: Multiple sclerosis
Entry
H01490                      Disease                                
Name
Multiple sclerosis
Description
Multiple Sclerosis (MS) is a chronic disease of the central nervous system (CNS) characterized by inflammation, demyelination and axonal loss. This disease typically strikes young adults, especially women. There are four types of MS according to their relapsing or progressive pattern that include relapsing-remitting (RRMS), secondary progressive (SPMS), primary progressive (PPMS), and progressive relapsing (PRMS). In most patients, the disease has a relapsing-remitting course during the first years. Within 10 years, approximately 50% of patients progress to SPMS. The aetiology of MS is not well understood, but it is likely multifactorial, combining both genetic and environmental factors. Recently, the literature on the risk factors for MS has grown substantially. They indicate that a combination of a genetic predisposition, exposure to Epstein-Barr virus, cigarette smoking, and reduced sunlight exposure/vitamin D levels is involved. Authorized first-line treatments are considered equally effective, and include interferon beta and glatiramer acetate. They are primarily directed against inflammation, and might fail to adequately control disease activity in some patients. In that case, it has been recommended to switch these patients early to a therapy of higher efficacy. Currently, 13 different drugs with ten different active components are licensed in the European Union (EU) and the United States (US) for the treatment of MS.
Category
Immune system disease
Brite
Human diseases in ICD-11 classification [BR:br08403]
 08 Diseases of the nervous system
  Multiple sclerosis or other white matter disorders
   8A40  Multiple sclerosis
    H01490  Multiple sclerosis
Pathway-based classification of diseases [BR:br08402]
 Signal transduction
  nt06516  TNF signaling
   H01490  Multiple sclerosis
 Cellular process
  nt06527  Necroptosis
   H01490  Multiple sclerosis
 Immune system
  nt06537  TCR/BCR signaling
   H01490  Multiple sclerosis
Pathway
hsa04658 Th1 and Th2 cell differentiation   
hsa04659 Th17 cell differentiation   
hsa04612 Antigen processing and presentation   
hsa04217 Necroptosis   
hsa04660 T cell receptor signaling pathway   
Network
nt06516 TNF signaling
nt06527 Necroptosis
nt06537 TCR/BCR signaling
Gene
(MS) PDCD1 [HSA:5133] [KO:K06744]
(MS) HLA-DRB1 [HSA:3123] [KO:K06752]
(MS) HLA-DQB1 [HSA:3119] [KO:K06752]
(MS5) TNFRSF1A [HSA:7132] [KO:K03158]
Pathogen
Human herpesvirus 4 (Epstein-Barr virus) [GN:T40079]
Drug
Triamcinolone acetonide [DR:D00983]
Dexamethasone [DR:D00292]
Hydrocortisone [DR:D00088]
Hydrocortisone sodium succinate [DR:D00978]
Prednisolone sodium phosphate [DR:D00981]
Prednisone [DR:D00473]
Methylprednisolone [DR:D00407]
Methylprednisolone sodium succinate [DR:D00751]
Methylprednisolone acetate [DR:D00979]
Corticotropin [DR:D00146]
Cladribine [DR:D01370]
Mitoxantrone hydrochloride [DR:D02166]
Ofatumumab [DR:D09314]
Interferon beta-1a [DR:D04554]
Interferon beta-1b [DR:D00746]
Peginterferon beta-1a [DR:D10483]
Glatiramer acetate [DR:D04318]
Daclizumab [DR:D03639]
Fingolimod hydrochloride [DR:D04187]
Ozanimod hydrochloride [DR:D10967]
Siponimod fumarate [DR:D11072]
Ponesimod [DR:D11215]
Natalizumab [DR:D06886]
Alemtuzumab [DR:D02802]
Ocrelizumab [DR:D05218]
Ublituximab [DR:D11243]
Teriflunomide [DR:D10172]
Dimethyl fumarate [DR:D03846]
Diroximel fumarate [DR:D11154]
Baclofen [DR:D00241]
Dantrolene sodium [DR:D02274]
Dalfampridine [DR:D04127]
Monomethyl fumarate [DR:D11492]
Fingolimod lauryl sulfate [DR:D12549]
Other DBs
ICD-11: 8A40
ICD-10: G35
MeSH: D009103
OMIM: 126200 614810
Reference
  Authors
Milo R, Miller A
  Title
Revised diagnostic criteria of multiple sclerosis.
  Journal
Autoimmun Rev 13:518-24 (2014)
DOI:10.1016/j.autrev.2014.01.012
Reference
  Authors
McKay KA, Kwan V, Duggan T, Tremlett H
  Title
Risk factors associated with the onset of relapsing-remitting and primary progressive multiple sclerosis: a systematic review.
  Journal
Biomed Res Int 2015:817238 (2015)
DOI:10.1155/2015/817238
Reference
  Authors
Goris A, Pauwels I, Dubois B
  Title
Progress in multiple sclerosis genetics.
  Journal
Curr Genomics 13:646-63 (2012)
DOI:10.2174/138920212803759695
Reference
PMID:15912506 (PDCD1)
  Authors
Kroner A, Mehling M, Hemmer B, Rieckmann P, Toyka KV, Maurer M, Wiendl H
  Title
A PD-1 polymorphism is associated with disease progression in multiple sclerosis.
  Journal
Ann Neurol 58:50-7 (2005)
DOI:10.1002/ana.20514
Reference
PMID:14669136 (HLA-DRB1 HLA-DQB1)
  Authors
Oksenberg JR, Barcellos LF, Cree BA, Baranzini SE, Bugawan TL, Khan O, Lincoln RR, Swerdlin A, Mignot E, Lin L, Goodin D, Erlich HA, Schmidt S, Thomson G, Reich DE, Pericak-Vance MA, Haines JL, Hauser SL
  Title
Mapping multiple sclerosis susceptibility to the HLA-DR locus in African Americans.
  Journal
Am J Hum Genet 74:160-7 (2004)
DOI:10.1086/380997
Reference
PMID:22801493 (TNFRSF1A)
  Authors
Gregory AP, Dendrou CA, Attfield KE, Haghikia A, Xifara DK, Butter F, Poschmann G, Kaur G, Lambert L, Leach OA, Promel S, Punwani D, Felce JH, Davis SJ, Gold R, Nielsen FC, Siegel RM, Mann M, Bell JI, McVean G, Fugger L
  Title
TNF receptor 1 genetic risk mirrors outcome of anti-TNF therapy in multiple sclerosis.
  Journal
Nature 488:508-511 (2012)
DOI:10.1038/nature11307
LinkDB

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