Achromobacter aegrifaciens: RA224_20375
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Entry
RA224_20375 CDS
T09343
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
aaeg
Achromobacter aegrifaciens
Pathway
aaeg02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
aaeg00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RA224_20375 (pdeR)
Enzymes [BR:
aaeg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
RA224_20375 (pdeR)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS_4
PAS
PAS_10
GGDEF_2
Nre_C
CRISPR_Cas2
Motif
Other DBs
NCBI-ProteinID:
WLW59583
LinkDB
All DBs
Position
complement(4383499..4385496)
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AA seq
665 aa
AA seq
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MTDDQDEKSILYTHFGTHSPYWRLSADSDAFELAAVKGAANIAMALRPEQAETIRSLTGI
TSSVRIDISLYGDMLRLHLVGRKINPNEWAGTASAHSDTESVAKDLVEGLSFAETVVSEA
NSVIVIVDQNGRVQRFNKLSEEYTGKREQDIIGRSVFEMFMTREEAIASRRNIAEFYKRG
QSYEAERLINTVKGPRLFLFRNKFVTSGSGEKRVYLICSGTDITEERQAQERLRVLANTD
MLTNLPNRHAITTRLKAALAAGEDGRGGVLFLDLDNFKRINDHYGHGFGDRLLKSVAVAI
SSCLAEGQTLARLGGDEFIVLHEAAQTWELEATAQRIIERLREPFRQGLIEVYTSCSIGI
AMYPEHGADLDSVVRSADIAMYVAKEAGRHTYRVFQPEMDRRNADYVWLDTNLRKALAED
HLMLYYQPKLAGRNGEVDGVEALVRWRSPERGMVGPAVFIPYAEESGLISPLGVWVMREA
ARQAAAWKRDGLNIRIAINMSARQLNDKGVVSDFMRAINDASLDPCLLDIELTESCLIDD
EGAAIELIKQFRQLGARVHLDDFGTGYSSLSQLARIPLDAIKLDASFVRGVNENPVSQAL
ARAIVAVARTLELKVIAEGVETTEEAVFVDTLGVDAKQGYLYAKPMPAAEFTAWLAQRRR
LHLIA
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgacagacgaccaggacgaaaagtcgattctgtacacgcatttcggaacgcatagtccg
tattggcgtctgtccgccgatagcgacgcgttcgaacttgcagcagtcaagggcgcagcc
aatatcgcgatggcattgcgcccggaacaagccgagacgatacgcagcctgacgggcatc
acgtccagcgtgcgcatcgacatctcgctgtacggcgacatgctcaggctccacctggtg
ggccgcaagatcaatcccaacgaatgggccggcaccgcgtccgcccattccgacactgaa
tccgtggccaaggatctggtcgaaggcctgtcctttgccgagaccgtggtgtccgaggcc
aactcggtcatcgtcatcgtcgaccagaacggccgggtgcagcgcttcaacaagctcagc
gaggaatacaccggcaagcgcgagcaggacatcatcggccgcagcgtgttcgagatgttc
atgacgcgcgaagaggcgatcgcctcgcgccgcaatatcgccgagttctacaagcgcggg
caatcctacgaggccgagcgcctcatcaatacggtcaaggggccgcgcctcttcctgttc
cgcaacaagttcgtcaccagcggcagcggcgaaaagcgcgtctacctgatctgctcgggc
accgacatcaccgaggaacgccaggcgcaggagcgcctgcgggtgctggccaataccgac
atgctgaccaacctgcccaaccgccacgcgatcacgacgcggctgaaggcggcgctggcg
gcgggcgaggacgggcggggcggcgtgctgttcctggacctggacaatttcaagcgcatc
aacgatcactacggccacggcttcggcgaccgtctgttgaagtcggtggcggtcgcgatc
tcgtcctgcctcgccgaaggccagaccctggcgcggttgggcggggacgaattcatcgtg
ctgcacgaggctgcgcagacctgggagctggaggcgaccgcccagcgcatcatcgaacgg
ctgcgcgagcctttccgccaggggctgatcgaggtctacaccagttgctccatcggcatc
gccatgtatccggagcacggcgccgacctggacagcgtggtgcgcagcgccgacatcgcc
atgtatgtggccaaggaagcggggcgccatacctaccgcgtgttccagcccgagatggac
cgccgcaacgcggactacgtctggctggacaccaatctgcgcaaggcgctggccgaagac
catctgatgctgtactaccagcccaagctggccggccgcaatggcgaggtcgacggggtc
gaagccctggtgcgctggcgttcgccggaacgcggcatggtcggccccgccgtcttcatt
ccgtacgccgaggagtcgggcctgatctcgccgctgggcgtatgggtcatgcgtgaagcg
gccaggcaagccgcggcctggaagcgcgacggcctgaacatccgcatcgccatcaatatg
tcggcgcggcagttgaatgacaagggcgtggtcagcgacttcatgcgcgccatcaacgac
gccagcctggatccctgcctgctggacatcgaactgaccgaaagctgcctgatcgacgac
gaaggcgccgccatcgaactgatcaagcagttccgccaacttggcgcgcgggtccatctg
gacgacttcggcaccggctattcctcgttgtcgcagctggcccgcattccgctggacgcg
atcaagctggacgccagcttcgtgcgcggcgtcaacgagaacccggtgtcgcaggcgctg
gcgcgcgccatcgtcgcggtggcgcgcacgctggagctcaaggtgatcgccgagggcgtg
gaaaccaccgaagaagccgtgttcgtcgacaccctgggcgtggacgccaaacagggctac
ctgtacgccaagcccatgccggcggcggagttcaccgcctggctggctcagcgccgccgg
ctgcatctcattgcctga
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integrated database retrieval system
