KEGG   Aureococcus anophagefferens: AURANDRAFT_22116
Entry
AURANDRAFT_22116  CDS       T04134                                 
Name
(RefSeq) hypothetical protein
  KO
K03011  DNA-directed RNA polymerase II subunit RPB3
Organism
aaf  Aureococcus anophagefferens
Pathway
aaf03020  RNA polymerase
aaf03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:aaf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    AURANDRAFT_22116
  09124 Replication and repair
   03420 Nucleotide excision repair
    AURANDRAFT_22116
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aaf03021]
    AURANDRAFT_22116
   03400 DNA repair and recombination proteins [BR:aaf03400]
    AURANDRAFT_22116
Transcription machinery [BR:aaf03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     AURANDRAFT_22116
DNA repair and recombination proteins [BR:aaf03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      AURANDRAFT_22116
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_L
Other DBs
NCBI-GeneID: 20219556
NCBI-ProteinID: XP_009034415
JGI: Auran1_22116
UniProt: F0Y1J0
LinkDB
Position
Unknown
AA seq 324 aa
MSVYAVASGRSRVPQVSVRDLEENTMCFEVRDTDCSTANSLRRVMVGEVVSMAIDLVTFE
ENTSVVNDEIIAHRLGLVPINDRDIRRRFRHTRDCDCDSHCDFCAATLKLHVSFDDRAKD
LPEHEKNNPLTVTTLDLVSDDPDVAPVHFVSKREESTSQETGIALVKLAKGQELKLTCIA
KLGCGKEHAKWIPVSKCVFRPVPEVTWDDAAVAELAPTLRDAIIQVCPAGVLGYADDRDR
SKIEVKDEAAILDFADDIHALTKTLNPTGKSMLFARPSTTNFIFDVESLGSIPVDDVVLC
GINELKRKLTNLQLAVNEIAETEA
NT seq 975 nt   +upstreamnt  +downstreamnt
atgtcggtctacgccgtcgccagcggccggtcgcgcgtgccccaggtgtccgtgcgcgac
ctcgaggagaacacgatgtgcttcgaggtgcgcgacacggactgctccacggcgaactcg
ctgcggcgcgtcatggtcggcgaggtcgtgagcatggccatcgacctcgtgacgttcgag
gagaacacgtccgtcgtgaacgacgagatcatcgcgcaccgcctgggcctcgtgcccatc
aacgaccgcgacatccggcgccggttccgccacacgcgcgactgcgactgcgacagccac
tgcgacttctgcgccgcgacgctcaagctccacgtgtccttcgacgaccgcgccaaggac
ctgccggagcacgagaagaacaacccgctcaccgtgacgacgttggacttggtgtccgac
gacccggacgtcgcgcccgtgcacttcgtgtccaagcgcgaggagtcgacgtcccaggag
acgggcatcgccctcgtcaagctcgccaagggccaggagttgaagttgacgtgcatcgcc
aagctgggctgcggcaaggagcacgcgaagtggatcccggtatcgaagtgcgtcttccgg
cccgtgcccgaggtcacctgggacgacgccgccgtcgccgagctcgcgccgacgctccgc
gacgccatcatccaggtctgccccgcgggcgtcctcggctacgcggacgaccgcgaccgg
tcgaaaatcgaagtcaaggacgaggccgcgatcctcgacttcgccgacgacatccacgcg
ctcacgaagacgctcaacccgacgggcaagtccatgctcttcgcgcggccctccacgacg
aacttcatcttcgacgtcgagtccctcggctccatccccgtcgacgacgtcgtgctctgc
ggcatcaacgagctcaagcgcaagctcacgaacctccagctcgccgtcaacgagatcgcc
gagacggaggcctag

DBGET integrated database retrieval system