Aureococcus anophagefferens: AURANDRAFT_22116
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Entry
AURANDRAFT_22116 CDS
T04134
Name
(RefSeq) hypothetical protein
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
aaf
Aureococcus anophagefferens
Pathway
aaf03020
RNA polymerase
aaf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aaf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AURANDRAFT_22116
09124 Replication and repair
03420 Nucleotide excision repair
AURANDRAFT_22116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aaf03021
]
AURANDRAFT_22116
03400 DNA repair and recombination proteins [BR:
aaf03400
]
AURANDRAFT_22116
Transcription machinery [BR:
aaf03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
AURANDRAFT_22116
DNA repair and recombination proteins [BR:
aaf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
AURANDRAFT_22116
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
Motif
Other DBs
NCBI-GeneID:
20219556
NCBI-ProteinID:
XP_009034415
JGI:
Auran1_22116
UniProt:
F0Y1J0
LinkDB
All DBs
Position
Unknown
AA seq
324 aa
AA seq
DB search
MSVYAVASGRSRVPQVSVRDLEENTMCFEVRDTDCSTANSLRRVMVGEVVSMAIDLVTFE
ENTSVVNDEIIAHRLGLVPINDRDIRRRFRHTRDCDCDSHCDFCAATLKLHVSFDDRAKD
LPEHEKNNPLTVTTLDLVSDDPDVAPVHFVSKREESTSQETGIALVKLAKGQELKLTCIA
KLGCGKEHAKWIPVSKCVFRPVPEVTWDDAAVAELAPTLRDAIIQVCPAGVLGYADDRDR
SKIEVKDEAAILDFADDIHALTKTLNPTGKSMLFARPSTTNFIFDVESLGSIPVDDVVLC
GINELKRKLTNLQLAVNEIAETEA
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtctacgccgtcgccagcggccggtcgcgcgtgccccaggtgtccgtgcgcgac
ctcgaggagaacacgatgtgcttcgaggtgcgcgacacggactgctccacggcgaactcg
ctgcggcgcgtcatggtcggcgaggtcgtgagcatggccatcgacctcgtgacgttcgag
gagaacacgtccgtcgtgaacgacgagatcatcgcgcaccgcctgggcctcgtgcccatc
aacgaccgcgacatccggcgccggttccgccacacgcgcgactgcgactgcgacagccac
tgcgacttctgcgccgcgacgctcaagctccacgtgtccttcgacgaccgcgccaaggac
ctgccggagcacgagaagaacaacccgctcaccgtgacgacgttggacttggtgtccgac
gacccggacgtcgcgcccgtgcacttcgtgtccaagcgcgaggagtcgacgtcccaggag
acgggcatcgccctcgtcaagctcgccaagggccaggagttgaagttgacgtgcatcgcc
aagctgggctgcggcaaggagcacgcgaagtggatcccggtatcgaagtgcgtcttccgg
cccgtgcccgaggtcacctgggacgacgccgccgtcgccgagctcgcgccgacgctccgc
gacgccatcatccaggtctgccccgcgggcgtcctcggctacgcggacgaccgcgaccgg
tcgaaaatcgaagtcaaggacgaggccgcgatcctcgacttcgccgacgacatccacgcg
ctcacgaagacgctcaacccgacgggcaagtccatgctcttcgcgcggccctccacgacg
aacttcatcttcgacgtcgagtccctcggctccatccccgtcgacgacgtcgtgctctgc
ggcatcaacgagctcaagcgcaagctcacgaacctccagctcgccgtcaacgagatcgcc
gagacggaggcctag
DBGET
integrated database retrieval system