Aureococcus anophagefferens: AURANDRAFT_36761 Help Entry AURANDRAFT_36761  CDS       T04134                                  Name (RefSeq) hypothetical protein   KO K03006   DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] Organism aaf  Aureococcus anophagefferens Pathway aaf03020   RNA polymerase aaf03420   Nucleotide excision repair Brite KEGG Orthology (KO) [BR:aaf00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     AURANDRAFT_36761   09124 Replication and repair    03420 Nucleotide excision repair     AURANDRAFT_36761  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:aaf03021]     AURANDRAFT_36761    03400 DNA repair and recombination proteins [BR:aaf03400]     AURANDRAFT_36761 Enzymes [BR:aaf01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.6  DNA-directed RNA polymerase      AURANDRAFT_36761 Transcription machinery [BR:aaf03021]  Eukaryotic type   RNA polymerase II system    RNA polymerase II     Core subunits      AURANDRAFT_36761 DNA repair and recombination proteins [BR:aaf03400]  Eukaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase II complex       AURANDRAFT_36761 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_1 RNA_pol_Rpb1_3 RNA_pol_Rpb1_7 RNA_pol_Rpb1_6 RNA_pol_Rpb1_4 RNA_pol_Rpb1_R Motif Other DBs NCBI-GeneID:  20221746 NCBI-ProteinID:  XP_009034936 JGI:  Auran1_36761 UniProt:  F0Y4D3 LinkDB All DBs Position Unknown AA seq 1738 aa AA seqDB search MGNLDDKDDPGHFGHIELARPCYHLGYIKEVLMCLRCVCFHCSRLMADPSDYKVQGAQKY KAQKRLEAMHGLCRSKKRCEFATGAELQQAIMDGEQEGAVYGCGALQPTFRRRTAQSIEV EFQPDEETIPGTGDRKQILSAHRAYEVLRNISDKDAKMLGLDPKFARPEWLLITVLPVAP PHVRPSIQLSDSNARSEDDLTHQLVNIVKANKTLESLCRAGEANHVVSQFEELLQYKVNA LFDNEANAKDGVQERQRGGKPLKTIRQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLS IDQVGVPRSIAKTLTVPERVAPYNVHALMELVRNGPEVWPGARYVVHADGRRVDLRFVKH LNDLALHTGFVVERHLRDDDLIVFNRQPSLHKMSIMAHRVKVLDHSTFRLNLSVTSPYNA DFDGDEMNLHVPQNVAAKAELQQLMMVPRNVVSPQSNKPVMGIVQDSLLASARMTSKETF IDQDLLFNIVMWVGDDWDGVVPQPAILKPKPLWTGKQIFSLILPKLNFAGKGARFPKKGG NTLNWSDGEVLIQSGRLVTGVMDKKSLGTSGGSLIHVIWLEMGHVAAMHFLNRVQTTTNQ WLVNVSFSIGIGDAVADQSTMRTIEKIIDEAKLKVKELVQKGQRGALECQPGRTMIESFE AMVNRVLNAARTSAGLSVQESISEANNVKSMAMAGSKGNDINISQIIACVGQQNVEGKRI PYGFRRRTLPHFAKDDLGPESRGFVENSYLRGLSPQEFYFHAMGGREGLIDTACKTAQTG YLQRRLVKSMESIMVKYDGTVRNNQGNVVQFLYGEDGGDGVWVEKQKFASLLLNNDELRE HYGVNLDWDDDGDSVTGGVALALDVADACRQDVALAALLENELEQLQRDRDALRAIFACR EPDKDADPFANLPVNLARLVWAAQRQFECGPRLERAQLDPRTDDDADGVAAVDALVNAGR TETDAEDPTALFAILIRCTLAARKCCFEYRLNRAAFDWLMGEIESRFVQARAHAGEMCGV LAAQSMGEPATQMTLNTFHFAGVSAKNVTLGVPRLNEILNVAKTVRTPSLTIYLAPEIKD DEEKAREVQAKLEHTTLGDVTTLTQIVYDPDATSTVVEDDREFVAAYCDVPDEDFDPKAM SPWVLRMELNREVVADKKLRMADVAATIADEYGADLHCIYADDNADKLVLRVRIRSGGAR AGGDDAAPALGDAEVDDDEWTFLRRIEGNMLSDLRLRGVPRVTKVYIKKTKMTRWDPDTG ALGGDEEWVLETDGTNLAAILGDRDVDHTRTCSNDIVEICDVMGIEGTRQALLQMLREVI SFDGAYVNYRHLAVLCDTMCFRGSLMAISRHGINRGDSGPLLSASFEETVEILFKSAVYA RSDDVDGVTPNIMLGQLAHVGSGVCDLLLDTPQLQHAVELEAPDAPAGAAADPATRGAFA DAGGFGAPSPAHTPYAASPSGMYGASPARGGATPGWGDASFSPSIGGVQSVLSPVYGVSP VLSPAYAPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP AYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSP TSPAYSPTSPAYSPTSPAYSPSSPAYSPSSPAYSPGSPAYSPTAYDGPNHGETSPSSYNP SSPSLAGTTPAGGGEYSPKASSEAGTAYSPSGQYSPDSGGGQYSPTAEAPPDDEEKKP NT seq 5217 nt NT seq  +upstreamnt  +downstreamnt atgggcaacctcgacgacaaggacgacccgggccacttcggccacatcgagctcgcgcgg ccctgctaccacctgggctacatcaaggaggtgctcatgtgcctgcgctgcgtgtgcttc cactgcagccgcctgatggcggacccgagcgactacaaggtccagggcgcgcaaaagtac aaggcgcagaagcgcctcgaggccatgcacggcctctgccggtccaagaagcgctgcgag ttcgcgacgggcgccgagctccagcaggccatcatggacggcgagcaggagggcgccgtc tacggctgcggcgcgctccagccgacgttccgccggcggaccgcgcagtccatcgaggtc gagttccagcccgacgaggagacgatcccgggcacgggcgaccggaagcagatcctcagc gcccaccgggcctacgaggtgctgcgcaacatctccgacaaggacgcgaagatgctcggc ctcgacccgaaattcgcgcggcccgagtggctcctcatcacggtgctccccgtggcgccg ccccacgtgcggccgtccatccagctcagcgactcgaacgcgcggtccgaggacgacctc acgcaccagctcgtgaacatcgtcaaggcgaacaagacgctcgagtcgctctgccgcgcg ggcgaggcgaaccacgtcgtctcccagttcgaggagctgctccagtacaaggtcaacgcc ctcttcgacaacgaggccaacgccaaggacggcgtccaggagcggcagcgcggcggcaag cccctgaagacgatccgccagcggctcaagggcaaggagggccgcatccgcggcaacctc atgggcaagcgcgtcgactttagcgcgcgcacggtcatcacggcggacccgaacctgagc atcgaccaggtcggcgtgccgcggtccatcgcgaagacgctcacggtgccggagcgcgtc gcgccgtacaacgtgcacgcgctcatggagctggtgcgcaacgggcccgaggtctggccg ggcgcgcgctacgtcgtccacgccgacgggcgccgcgtggatttacggttcgtgaagcac ctcaacgacctcgcgctccacacgggcttcgtcgtcgagcgccacctccgcgacgacgac ctcatcgtcttcaaccgccagccgtcgctccacaagatgtccatcatggcccaccgcgtc aaggtcctggaccactccacgttccggctgaacctgtcggtgacgtcgccgtacaacgcg gacttcgacggcgatgagatgaatttgcacgtgccccagaacgtcgccgccaaggccgag ctccagcagctcatgatggtgccgcgcaacgtcgtgagcccccagtcgaacaagcccgtc atgggcatcgtccaggactcgctcctcgcgtccgcgcgcatgacgtcgaaggagacgttc atcgaccaggacctgctcttcaacatcgtcatgtgggtcggcgacgactgggacggcgtc gtgccccagccggccatcctgaaaccgaagccgttgtggacgggcaagcagatcttctcg ctgatcctgccgaagctcaacttcgcgggcaagggcgcgcggttccccaagaagggcggc aacacgctcaactggtccgacggcgaggtgctcatccagtccgggcgcctcgtgacgggc gtcatggacaagaagtcgctgggcacgtccggcggctcgctgatccacgtcatctggctc gagatgggccacgtcgccgcgatgcacttcctgaaccgcgtccagacgacgacgaaccag tggctcgtcaacgtgagcttctccatcggcatcggcgacgccgtcgcggaccagtcgacg atgcggaccatcgagaagatcatcgacgaggcgaagctcaaggtcaaggagctcgtccag aagggccagcgcggcgccctcgagtgccagcccggccgcaccatgatcgagtccttcgag gccatggtcaaccgcgtgctcaacgccgcgcggacgtccgcggggctctcggtccaggag tcgatctccgaggcgaacaacgtcaagtccatggccatggccggctccaagggcaacgac atcaacatcagccagatcatcgcctgcgtcggccagcagaacgtcgagggcaagcgcatc ccctacggcttccggcggcgcacgctgccgcactttgcgaaggacgatctggggcccgag agccgcggcttcgtcgagaactcgtacctgcggggcctgagcccccaggagttctacttc cacgccatgggcggccgcgagggtttgatcgacacggcctgcaagacggcgcagacgggc tacctccagcggcgcctcgtcaagtcgatggagtcgatcatggtcaagtacgacggcacg gtgcgcaacaaccagggcaacgtcgtccagttcctctacggcgaggacggcggcgacggc gtctgggtcgagaagcagaaattcgcgagcctgctcctcaacaacgacgagctccgggag cactacggcgtgaacctcgactgggacgacgacggcgactcggtcacgggcggcgtcgcg ctggcgctcgacgtcgccgacgcctgccgccaggacgtggccctcgccgcgttgctcgag aacgagctcgagcagctccagcgcgaccgcgacgcgctgcgggccatcttcgcgtgccgc gagcccgacaaggacgcggacccgttcgcgaacctgccggtgaacctcgcgcgcctcgtc tgggccgcccagcgccagttcgagtgcggcccgcgcctcgagcgggcccagctcgacccg cgcacggacgacgacgccgacggcgtcgccgccgtcgacgccctcgtgaacgcgggccgg accgagaccgacgccgaggacccgacggccctcttcgcgatcctcatccggtgcacgctc gccgcgcgcaagtgctgcttcgagtaccggctgaaccgcgccgccttcgactggctcatg ggcgagatcgagagccgcttcgtccaggcgcgggcccacgcgggcgagatgtgcggcgtg ctcgccgcccagtccatgggcgagcccgcgacgcagatgacgctcaacacgttccacttc gcgggcgtcagtgccaagaacgtcacgctcggcgtgccgcggctcaacgagatcctcaac gtggccaagaccgtgcgcacgccgtcgctgaccatctacctcgcgccggagatcaaggac gacgaggagaaggcgcgcgaggtccaggccaagctcgagcacacgaccttgggcgacgtg acgaccttaacgcagatcgtctacgacccggacgccacttccacggtcgtcgaggacgac agggagttcgtcgcggcctactgcgacgtgcccgacgaggacttcgaccccaaggccatg tcgccctgggtcctgcgcatggagctgaaccgcgaggtcgtcgcggacaagaagctccgc atggccgacgtcgcggcgacgatcgccgacgagtacggcgcggacctccactgcatctac gccgacgacaacgcggacaagctcgtgctccgcgtgcgcatccggtcggggggcgcgcgc gcgggcggcgacgacgccgcgccggcgctcggcgacgccgaggtcgacgacgacgagtgg accttcctccggcgcatcgagggcaacatgctcagcgatctgcggctgcgcggcgtgccc cgcgtgaccaaggtctacatcaagaagacgaagatgacgcgctgggacccggacacgggc gcgctcggcggcgacgaggagtgggtgctcgagacggacggcacgaatctggcggccatc ctgggcgacagggacgtggaccacacgcggacgtgctccaacgacatcgtggagatctgc gacgtcatgggcatcgagggcacgcggcaggccctgctccagatgctccgcgaggtcatc tccttcgacggcgcctacgtcaactaccgccacctcgccgtgctctgcgacaccatgtgc ttccgcgggtcgctcatggccatcagccgccacggcatcaaccgcggcgactccggcccg ctcctctccgcgtccttcgaggagacggtcgagatcctcttcaagagcgccgtctacgcg cggtccgacgacgtcgacggagtcacgccgaacatcatgctcggccagctcgcgcacgtc ggctccggcgtctgcgatctgctcttggacacgccgcagctccagcacgccgtcgagctc gaggcgccggacgcgcccgcgggcgccgcggcggacccggcgacgcgcggcgccttcgcc gacgccgggggcttcggcgcgccgtcgccggcgcacacgccctacgccgcgagcccgtcc ggcatgtacggcgcgtcgcccgcgcgcggcggcgcgacgccgggctggggcgacgcgtcc ttctcgccgtccatcggcggcgtccagtccgtcctctcgcccgtctacggcgtctccccg gtcctctccccggcctacgcgcccacgtcgccggcctactcgccgacgagccccgcgtac tcgccgacgagcccggcctactcgccgacgtcgccggcctactcgccgacgtcgcccgcc tactcgccgacgtcgccggcctactcgccgacgagcccggcctactcgccgacgtcgccg gcctactcgcccacgagccccgcgtattcgcccacgagcccggcctactcgcccacgagc ccggcctactcgccgacgtcgcccgcgtactcgccgacgtcgccggcctactcgccgacg tcgccggcctactcgcccacgagcccggcctactcgccgacgtcgccggcctactcgccc acgtcgccggcctactcgcccacgagcccggcctactcgccgacgagcccggcgtactcg ccgtcgagccccgcgtacagcccgagctcgccggcctactcgccgggcagcccggcctac tcgccgacggcctacgacggcccgaaccacggcgagacgagcccgagcagctacaacccg agctcgccgtcgctcgccggcacgacgcccgcgggcggcggcgagtactcgccaaaggcc agcagcgaggccggcacggcgtactcgccctcggggcagtactcgcccgacagcggcggc ggccagtattctccgaccgccgaggcgccgcccgacgacgaagaaaagaagccctag

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