KEGG   Aureococcus anophagefferens: AURANDRAFT_8009
Entry
AURANDRAFT_8009   CDS       T04134                                 
Name
(RefSeq) hypothetical protein
  KO
K03014  DNA-directed RNA polymerases I, II, and III subunit RPABC2
Organism
aaf  Aureococcus anophagefferens
Pathway
aaf03020  RNA polymerase
aaf03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:aaf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    AURANDRAFT_8009
  09124 Replication and repair
   03420 Nucleotide excision repair
    AURANDRAFT_8009
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aaf03021]
    AURANDRAFT_8009
   03400 DNA repair and recombination proteins [BR:aaf03400]
    AURANDRAFT_8009
Transcription machinery [BR:aaf03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     AURANDRAFT_8009
  RNA polymerase III system
   RNA polymerase III
     AURANDRAFT_8009
  RNA polymerase I system
   RNA polymerase I
     AURANDRAFT_8009
DNA repair and recombination proteins [BR:aaf03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      AURANDRAFT_8009
SSDB
Motif
Pfam: RNA_pol_Rpb6
Other DBs
NCBI-GeneID: 20229174
NCBI-ProteinID: XP_009034170
JGI: Auran1_8009
UniProt: F0Y1P5
LinkDB
Position
Unknown
AA seq 77 aa
ERVTTRYMTKYEKARVLGTRALQISMNAPVMVDVAGETDPLKIANKELRERKIPLIIRRY
LPDGSYEDWPIRDLIID
NT seq 231 nt   +upstreamnt  +downstreamnt
gagcgcgtcacgacgcggtacatgacgaagtacgagaaggcgcgcgtgctgggcacgcgc
gcgctgcagatctccatgaacgcgccggtcatggtcgacgtcgcgggcgagacggacccc
ctcaagatcgccaacaaggagctccgcgagcgcaagatcccgctcatcatccgacggtac
ctgcccgacggctcctacgaggactggcccatccgggacctcatcatcgac

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