Arvicola amphibius (Eurasian water vole): 119826088
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Entry
119826088 CDS
T08327
Symbol
Trpa1
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp04750
Inflammatory mediator regulation of TRP channels
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09150 Organismal Systems
09157 Sensory system
04750 Inflammatory mediator regulation of TRP channels
119826088 (Trpa1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
aamp04040
]
119826088 (Trpa1)
Ion channels [BR:
aamp04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
119826088 (Trpa1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Ion_trans
Acetate_kinase
Motif
Other DBs
NCBI-GeneID:
119826088
NCBI-ProteinID:
XP_038203038
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Position
11:69879409..69922197
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AA seq
1116 aa
AA seq
DB search
MKCSLRRMLRPEERKEIQGVAYCGVKEDTDCFKDSFKVDMEGDTYRLEDFMKNRRKLSKF
EDENISPLHHAAAEGQIELMKMIIHGSSCEVLNIMDSCGNTPLHWAAEKNQVESVKFLLS
QGANPNLRNNTMMAPLHIAVQYTYNEMIKVLTEHSTTNINLEGENGNTALMSTCAKDNSE
ALQILLEKEAKLCKSNKWGDYPVHQAAFSGAKKCMELILTYGEKCGYSRATHINFVNHKK
VSPLHLAVQSGDLDMIQMCLDNGAHIDMIENGKCMALHFAATQGATDIVKLMISSYTGSR
DIVNAVDGNQETLLHRASLFDHHDLADYLISVGADINSTDSEGRSPLILATASASWNIVN
LLLSKGAKVDIKDHLGRNFLHLTVQQPYGLKNLRPEFMQMQHIKELVMDEDNDGCTPLHY
ACRQGVPVSVNNLLGFNVSIHSKSKDKKSPLHFAASYGRINTCQRLLQDISDTRLLNEGD
LHGMTPLHLAAKNGHDKVVQLLLKKGALFLSDHNGWTALHHASMGGYTQTMKVILDTNLK
CTDRLDEEGNTALHFAAREGHAKAVALLLNYNAEILLNKQHASFLHIALHNKRKEVVLTT
IRSKRWDECFQVFSHYSPSNRCPIMEMVEYLPECMKVLLDFCMIPSTEDKSCQDYHIEYN
FKYLQCPLALTKKLTPVQDVRYEPLAILNVMVQHNRIELLNHPVCKEYLLMKWCAYGFRA
HMMNLGSYCLGLIPMTFLVVKIKPGMAFNSTGIINETSNHLETVDTLNSFPIKICMILVF
LSSLFGYCKEVVQIFQQKRNYFLDYNNALEWVIYTTSIIFVLPLFLNIPAYMQWECGAIA
IFFYWMNFLLYLQRFENCGIFIVMLEVIFKTLLRSTGVFIFLLLAFGLSFYVLLSFQDAF
STPLLSLIQTFSMMLGDINYRDAFLEPFLRKELAYPVLTFGQLIAFTMFVPIVLMNLLIG
LAVGDIAEVQKHAALKRIAMQVELHTNLEKKLPLWFLRKVDQQYTVVYPNRPRHGRMLRF
FHYFLSTQETRQEAPNTDMCLEIEILKQKYRLKDLTSLLEKQHELIKLIIQKMEIISETE
DEDNHCSFQDKFKKERLEQMQSKWNFVLNAVKSKPH
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgaagtgcagcctgcggaggatgctgcgcccagaggagaggaaggagatccagggtgtt
gcctattgcggcgtgaaggaagacacggactgctttaaggactcctttaaggtggacatg
gaaggagatacgtatagactagaagacttcatgaagaaccgaagaaaactaagcaaattt
gaagatgaaaatatctcccctttgcatcacgcagcagcagaagggcaaattgagctcatg
aagatgattatccatgggtcttcttgtgaagtactgaatataatggatagttgtggaaat
accccactacactgggctgcagaaaaaaaccaagtcgaaagtgtgaagtttcttcttagt
caaggagccaatccaaacctccgaaacaacaccatgatggcaccccttcacatagccgtg
cagtacacgtacaacgaaatgatcaaggtcttgacggagcacagcaccactaacatcaac
ttagaaggagagaatggaaacacagcgttgatgtctacatgtgccaaagacaacagtgaa
gccttgcagattttgttagaaaaagaagctaaactgtgtaaatccaataaatggggagac
taccctgtccaccaggctgcattttcgggtgccaaaaaatgcatggaattaatactaacg
tatggcgaaaagtgcggctacagcagggcgactcacatcaacttcgtgaatcataagaaa
gtcagcccgctccacctcgcagttcaaagcggtgatctggacatgattcagatgtgcctg
gacaacggcgcacacatcgacatgatagagaacggcaaatgcatggccctccattttgct
gccacccaaggggccactgacatcgttaaactcatgatctcatcttatactggaagccgt
gatattgtgaatgcagtcgatggcaatcaggagactttgcttcacagagcctcattgttt
gatcaccatgacctggcagactacttaatttcagtgggagcagacatcaacagcactgat
tctgaaggacgctctccacttattttagcaactgcatctgcatcttggaacattgtgaat
ttgctcctctctaaaggtgccaaagtagacataaaagaccatctggggcgtaacttttta
catttgactgtacaacagccttatggactaaaaaatttacggccagagtttatgcagatg
caacatattaaggagctggtgatggacgaagacaatgatgggtgtacgcctctccactat
gcgtgcaggcagggcgtcccagtctctgtcaataacctcctcgggttcaacgtgtccatt
cactccaaaagcaaagataagaaatcgcccctgcattttgcagccagctatggacgcatc
aacacatgtcagaggcttctacaagacataagtgacacaaggcttttgaatgaaggggat
ctccatgggatgacccctcttcatctggcagcaaagaatggacacgataaagtcgttcag
cttcttttgaagaaaggtgcattgttcctcagtgaccacaatggctggacggctttgcat
cacgcctccatgggtgggtacactcagaccatgaaggtcatccttgatactaacctgaag
tgtaccgatcgactagatgaagaagggaacacagcgctccactttgcagcacgggaaggc
catgccaaggctgttgcactgctcctgaactacaacgctgaaatcctcctgaataagcag
cacgcctcctttcttcatatcgcgctgcacaataagcggaaggaagtagttctcacaacc
atcaggagtaaaagatgggatgagtgttttcaggttttcagccattattctccaagcaat
agatgtccaatcatggaaatggtggaatacctcccagaatgcatgaaagttcttttagat
ttctgcatgataccttccacagaggacaaatcctgtcaggactaccatattgaatataat
ttcaagtatcttcagtgcccactagcattgaccaaaaaattaacacctgtccaggatgtg
agatatgagcctcttgcgatcctcaatgtcatggtacagcataaccgcatagagctcctc
aaccaccctgtgtgtaaggagtatttactcatgaaatggtgtgcctatggattcagagcc
catatgatgaacctaggatcttattgtcttggtctcatacctatgacctttcttgttgtc
aaaataaagcctggaatggccttcaactccactggaataatcaacgaaactagtaatcat
ttggaaacagtagacactctgaattcatttccaataaaaatatgtatgattctagtgttt
ttatcaagtttatttggatattgcaaagaagtggtccaaatcttccaacagaaaaggaac
tacttcctggattacaacaatgctctggagtgggtcatctacacaaccagtatcatcttt
gtgctacccttgtttctcaacatcccagcctatatgcagtgggaatgtggagcaatagca
atattcttctactggatgaacttcctgttatatcttcaaaggtttgagaactgtggaatt
ttcattgttatgttggaggtgatttttaaaactctgttgagatcgacgggagtgttcatc
tttctcctattggcttttggcctcagcttttatgtcctcctgagtttccaagacgccttc
agcactccgttgctttccttaatccagacgttcagtatgatgctgggtgacatcaactat
cgagatgccttcctagaaccattcttaaggaaggaattggcatatccagtcctgaccttt
gggcaacttattgccttcacaatgtttgtcccgattgtcctcatgaatttactaataggt
ttggcagttggggacattgctgaggtccagaagcatgcagcattgaagaggattgctatg
caggtggaacttcataccaacttggagaagaagctgccactgtggttcctacggaaagta
gaccagcagtacactgtcgtgtatccgaacagacctcggcatggcaggatgctacgattt
tttcattactttcttagtacacaagaaacacggcaagaagcaccaaacactgacatgtgt
ttggaaatagaaatattgaagcagaaatacagactgaaggacctcacttctctcttggaa
aagcagcatgaactcatcaaactcatcatccagaagatggaaatcatctcagagacagag
gacgaagataaccattgctctttccaggacaagttcaaaaaggagcggctagaacaaatg
cagagcaaatggaattttgtgttgaatgcagttaagagcaaaccacactaa
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