Anopheles arabiensis: 120904770
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Entry
120904770 CDS
T07381
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
aara
Anopheles arabiensis
Pathway
aara03020
RNA polymerase
aara03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aara00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120904770
09124 Replication and repair
03420 Nucleotide excision repair
120904770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aara03021
]
120904770
03400 DNA repair and recombination proteins [BR:
aara03400
]
120904770
Enzymes [BR:
aara01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120904770
Transcription machinery [BR:
aara03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
120904770
DNA repair and recombination proteins [BR:
aara03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
120904770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF3137
Motif
Other DBs
NCBI-GeneID:
120904770
NCBI-ProteinID:
XP_040171037
LinkDB
All DBs
Position
3:complement(1345915..1352630)
Genome browser
AA seq
1877 aa
AA seq
DB search
MSGESKAPLRLVKRVQFGILSPDEIRRMSVTEGGIQYAETMEGGRPKLCGLMDPRQGVIE
RTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPQNPKI
KEIVLKSKGQPRKRLAYVYDLCKGKKICEGGEDMDMSKEPTADGAKKQGHGGCGHYQPSI
RRTGLDLMAEWKDVNDENQEKKIQVSAERVYEILKHITDEECFVLGMDPKFARPDWMIIT
VLPVPPLAVRPAVVMFGATKNQDDLTHKLSDIIKANNELKKNEATGAAAHVIAENIKMLQ
FHVATLVDNDMPGMPKAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP
NLRIDQVGVPRSVAQNMTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDLRF
HPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSP
YNADFDGDEMNLHVPQSMETRAEIENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKR
DVFIEKEQMMNLLMFLPTWDGKMPQPAILKPKPLWTGKQIFTLIIPGNVNMIRTHSTHPD
EEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHIVFLELGHEIAGRFYGN
IQTVVNNWLLLEGHSIGIGDTIADPQTYAEIQRAIKKAKEDVIGVIQKAHNMELEPTPGN
TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLIDTA
VKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKL
SNKVFEKRYRFDPTNERTLRRIFNEDVIKELTETSSVIQEIEAEYEQLLRDREALRQIFP
NGDSKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPLKVIQGVRDLLQRCVIVAGTDRLSK
QANENATLLFQCLVRSTLCTKYVAEEFRLNNEAFEWLIGEIETRFQQAQCNPGEMVGALA
AQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPSLTVFLTGGAARDA
EKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFDPTRISPWL
LRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNADKLVLRIRIMNEDNKFQEN
EEENMDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAKKRIVITPEGEFKPI
GEWLLETDGTSMMKVLSERDVDPVRTYSNDICEIFSVLGIEAVRKSVEKEMNNVLQFYGL
YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLNDAAAHAEVDPM
RGVSENIILGQLPRMGTGCFDLLLDAEKCKLGMEIPHTSILGGTGMFFGSAATPSMTPWQ
QSATPGYGGWSPSGPASGMTPGGPSFSPSAQSDASGMSPSSWSPIRGSPSSPGPSMSPYP
PSSPSMSPSYSPSSPNYAPNSPGGASPSYSPTSPGYSPPSPQYSPGSSNYSPSSPNIHSA
TQNYSPTSPSYSPMSPMHPTSASNFASPGYSPTSPSYSPTSPSYSPSSPVFSPTSPSYSP
SSPSYSPTSPSYSPTSPSYSPTSPNFTPVTPSYSPSSPNYSPTSPHYSPASPSYSPSSPK
YSPTSPSYSPTSPSYIGSPHYTPASPQYGQASPNYSPTSPSYSPSSPQHSPGSSSNHYSI
GSSSYSQTPAPYSPNMSSYSPSSPKYSPTSPVYTSSSPTYSPSSPAYSPTPQGYSPSSPA
SPTYSPTSPSYDDSNED
NT seq
5634 nt
NT seq
+upstream
nt +downstream
nt
atgagtggagaatcgaaggcgccattgcgcttggtcaagcgcgtacagttcggcatcttg
tcgccggacgaaatccgtcgcatgtcggtgacggagggcggcatacagtatgcggaaacg
atggaaggtggccggccgaagctgtgcggcctgatggacccacggcagggtgtgatcgag
cgtacgtcccggtgtcaaacgtgcgcgggtaacatgaccgaatgcccgggccactttggg
catatcgatctggccaaaccggtgtttcacatcggcttcatcacgaagacgatcaaaata
ttgcgctgcgtgtgtttctactgctccaagatgctcgtgtcgccacagaacccaaagatc
aaggagatcgtcctgaagtcgaagggccagccccgcaagcgactcgcctatgtgtacgat
ctgtgcaagggaaagaaaatctgcgaaggcggtgaagacatggacatgtccaaggagcca
acggcggacggtgcgaagaagcagggccacggcggttgcggtcactaccagccatcgatc
cgacgtaccggcctggacctgatggccgagtggaaggatgtaaacgacgagaaccaggag
aaaaagatccaggtttcggccgagcgggtgtatgaaattctgaagcacattaccgacgaa
gagtgtttcgtgctcggcatggatccaaagtttgcgcgtcccgattggatgatcatcacc
gtgctgccggtaccgccgctggccgtccggcccgccgtcgtgatgttcggcgcaaccaag
aatcaggacgatttaacgcacaaactgtccgacatcatcaaggcgaacaacgagctgaag
aagaacgaagctaccggggcggccgcacacgtcattgcggaaaacatcaaaatgctgcag
ttccatgtggccacgctggtggacaacgatatgcccggtatgccgaaagcgatgcagaaa
agtggcaaaccgctcaaagcgatcaaggcgcgtctgaagggaaaggaaggccgtattcgc
ggtaacttgatgggtaagcgtgtcgatttctcggcccgtaccgtcattacgcccgatccg
aacctgcgcatcgatcaggtcggcgttccacgctccgtagcgcagaacatgaccttcccc
gagctggtgacgccgttcaacatcgatcggatgcaggagctggtacgtcgcggtaactca
cagtacccgggcgccaagtacattgtgcgcgacaatggcgagcgaatcgatctgcggttc
catccgaagtcgtccgatctgcatctgcagtgcgggtacaaggtggagcgccatctgcgc
gacgacgatctggtcattttcaaccgtcagcccacgctacacaaaatgagtatgatgggg
catcgggtgaaggtgttgccgtggtccacgtttcggatgaatcttagctgcacctcgccg
tacaacgccgatttcgacggtgacgagatgaacctgcacgtgccgcagtcgatggagacg
cgggcggagatcgaaaacattcacatcactccgcgccagatcattacgccgcaggccaac
aaacccgtcatgggtattgtgcaggacacgctgacggcagtgcgtaagatgaccaagcgc
gacgttttcatcgagaaggaacagatgatgaacctgctcatgttcttgccaacatgggat
ggtaaaatgccccagcccgccattctcaagccgaagccgctgtggacgggcaagcagatc
tttacgctcatcatccccggcaacgtgaacatgatccgcacgcattccacccacccggac
gaggaggacgatggaccgtacaagtggatctcgcccggcgacacgaaggtcatggtcgag
cacggcgatctgatcatgggcatcctgtgcaagaaaacgctcggtacgtcggctgggtcg
ctgctgcatatcgtgttcctggagctggggcacgaaattgccggccggttttacggcaac
atccagacggtcgtcaacaactggttgttgttggagggtcacagcatcggtatcggtgac
accattgccgatccgcagacgtacgccgaaatccagcgcgccattaagaaggccaaggag
gacgtgataggcgtgatccagaaggcgcacaacatggagctggaaccgacgcccggtaac
acgctgcgacagacgttcgagaatcaggtgaaccgtatcctgaacgatgctcgtgacaaa
actggtggttccgccaagaagtcgcttaccgagtacaacaacctgaaggctatggtcgtt
tccggttccaagggatccaacattaacatttctcaggttattgcttgtgtaggccaacag
aacgtcgagggtaagcgtattccgtttggtttccgcaaacgcacactgccgcacttcatc
aaggacgattacggtcccgagtctcgtggcttcgtggaaaattcgtaccttgccgggctg
acgccgaccgagttctacttccacgccatgggcggtcgtgaaggtttgattgatactgcc
gtcaaaacggccgaaaccggttacatccagcgtcgtttgatcaaggctatggagtccgtg
atggtcaactacgacggcacggtgcgtaattcggtggggcagctgattcagctgcgttac
ggcgaggacggtctgtgcggagagacggtcgagttccagaacctgccaacgatcaagctc
tcgaacaaggtgttcgagaagcggtaccgcttcgatccgaccaacgagcgtacgctgcgg
cggattttcaacgaggacgtcatcaaggagctgaccgaaacgtcgtccgtcattcaggag
attgaggccgagtacgagcagctgttgcgcgatcgcgaagcactgcgacagatcttcccg
aacggcgactcgaaggtcgtactaccctgcaatctgcagcgcatgatctggaatgtgcag
aagattttccacatcaacaaacgttcgccgactgatctgtcgccgctgaaggtgatccag
ggcgtgcgagatctgctgcaacgttgcgtgatcgtggccggcacggatcggctgtcgaag
caggccaacgagaacgcgacgctgctgttccagtgtctggtgcgttcgacgctctgcaca
aaatacgtggccgaggagttccggctgaacaacgaagcgttcgagtggttgatcggtgaa
atcgagacgcgcttccagcaggctcagtgtaacccgggcgagatggttggtgcgttggcg
gctcagtcgctcggcgagccggccacacagatgacgctgaacacgttccactttgccggt
gtgtcgtccaagaacgtaacgctcggtgtgcctcgtttgaaggaaattatcaacatttcc
aagcgtcccaaggcgccttcgctgaccgtcttcctgacgggcggagcggcccgtgacgcc
gaaaaggccaagaacgtgctgtgccgtttggagcacacgacactgcgtaaggtgacggcc
aacacggccatctactacgatcccgatccgcagcgtacggtcattgccgaggatcaggag
ttcgtgaacgtgtactacgaaatgcctgactttgacccgacgcgcatttccccgtggctg
ctgcgtatcgagctggaccgtaagcgaatgacggacaaaaagctgaccatggaacagatc
gcggagaagatcaatgccggtttcggagacgacttgaactgcatcttcaacgacgacaat
gcggacaagcttgtgctgcgcatccgtatcatgaacgaggacaacaaattccaggagaac
gaggaggaaaacatggacaagatggaggacgacatgttcctgcggtgtatcgaggcgaac
atgctgtcggacatgacgctgcagggcatcgaagcgatcggcaaggtgtacatgcatctg
ccgcaaaccgatgcgaagaagcgtatcgtcatcacgcccgagggtgagttcaagccgatc
ggtgaatggttgctggaaacggacggtacctccatgatgaaggtgctgagcgagcgggat
gtcgatccggtgcgcacgtacagtaacgacatctgtgagatcttctccgtgctgggcatc
gaagccgtgcgaaagtcggtcgagaaggaaatgaacaacgtgctgcagttctacggtctt
tacgtgaactaccgacatctggccctgctgtgtgacgtcatgacggcgaagggccatttg
atggccatcactcgacacggcattaaccggcaggacacgggtgcgctgatgagatgttcg
ttcgaggaaacggttgacgtgttgaacgatgcagcggcccacgcggaggtcgatccgatg
cgtggcgtgtcggagaacatcatcctcggccagctgccccgaatgggaacaggttgtttc
gatttgctgcttgacgcggagaaatgcaaactgggtatggaaattccgcacacctcgata
ctgggtggcacgggaatgttcttcggttcggcggcgacaccaagcatgacaccgtggcaa
cagtcggccacccccggctacggtggatggtctccatccggcccggccagtggcatgacg
cccggtgggcccagcttctcgccatcggcacagtcggacgcatcgggaatgtctccctcg
tcctggtccccgattcgaggatcacccagctctcccggtccatcgatgtcgccgtacccg
ccgtcgtcgccatcaatgtcaccgtcctactcgccgagcagtccgaactacgcgccgaac
tcgccgggcggtgcgtcgccatcgtactctccgaccagccctggctattcgccaccgagc
ccacagtattcgccgggcagctcgaactactccccaagcagccccaacatccactccgcg
acgcaaaactattcgcccacgtcgccaagctattcgccgatgtctcccatgcatccgacg
agcgcatccaactttgccagcccgggctactccccgacgagtccgtcgtattcgccgacc
tcgcccagctattcaccttcctctcccgtcttttcaccgaccagtccgtcgtactcaccg
tcgagcccttcgtactccccgaccagcccgtcctactcaccgacaagcccatcctactca
ccaacatcgccgaactttactcccgtcacaccgtcctactccccgtcgagcccgaactat
tcgcccacctcaccgcactactctccggcatctcccagctactcgccttcctcaccgaaa
tattctcccacatcgccgagctactcgcccacctcaccgtcgtacatcggcagtccgcac
tacacacccgccagcccacagtacgggcaagcgagcccgaactattccccgacgtcgccc
agctactcgccctcttcgccgcagcactcgcctggcagcagcagcaaccactacagcatc
ggctcgtcgtcgtactcgcaaacgccggcaccgtactcgcccaacatgtcctcgtactcg
cccagcagtccgaagtactctccgaccagcccggtctacacgtcgagctcgccgacctat
tcgccctcttcgccggcctattcaccgacaccgcagggttacagtccgtcgagcccggcc
agtcctacctactcgccgacgagtccgtcgtacgacgatagcaatgaggattaa
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integrated database retrieval system
