Alicyclobacillus fastidiosus: NZD89_11000
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Entry
NZD89_11000 CDS
T08690
Name
(GenBank) PolC-type DNA polymerase III
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
afas
Alicyclobacillus fastidiosus
Pathway
afas03030
DNA replication
afas03430
Mismatch repair
afas03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
afas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NZD89_11000
03430 Mismatch repair
NZD89_11000
03440 Homologous recombination
NZD89_11000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
afas03032
]
NZD89_11000
03400 DNA repair and recombination proteins [BR:
afas03400
]
NZD89_11000
Enzymes [BR:
afas01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NZD89_11000
DNA replication proteins [BR:
afas03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NZD89_11000
DNA repair and recombination proteins [BR:
afas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NZD89_11000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
HHH_6
Rv2179c-like
DNA_pol3_a_NII
RNase_H_2
tRNA_anti-codon
tRNA_anti_2
DEDDh_C
Zn-ribbon_8
YhfH
Motif
Other DBs
NCBI-ProteinID:
WAH43860
LinkDB
All DBs
Position
2213456..2217883
Genome browser
AA seq
1475 aa
AA seq
DB search
MQQDDFMNESAQQNEVNLPREVVERTVSRVVVNPAGNRVDIHLMPLEFATVDVAEVQREC
IRYLRDYRALQAASLCFGEYDATVSLHLAYTPSPYAPSTVECMVESLIDWYQEEELVAAT
WLRKAERSLADGRLTFFVGNDAERLSLERKGALVWLSDQMRRVFGVELSITSTVDRAAED
KTQALRQKLRDEERKHVEQVMIEQEQAQREQAQAAEKEASSSFQGNGGGYRRERRNPDEP
VEPLHIGRAIDGPLTSMKEIQDEMRRVAVEGRVFQSEVRTLPSGRTLVQFNITDNADSIT
AKMFVNNERQLEALSNLKDGVYVRVQGQVQYDTFLKELVLLIQDMRPAEGKVRTDTAPVK
RIELHAHTPMSSLDGVVPVKDLIGQAAKWGHTAIAITDHGVVQSFPEAYSVAKKNNLKCL
LGLEAYVVNDGVPIVYQLNADNDVAIDDSTTWVVFDTETTGLNSAENTLIEIAAVKVRGN
EIVEEWTELIDPEVPISKKISELTHITNDMVKGKRKLHEVLPDFKEFVGDAVLVAHNAEF
DLAFLRACAKRVGMEPWTNVVLDTLPLARKLYPHERNYRLGTMAKKFAVELINAHRALDD
TVALAKVYQYMLKDAVNSGFTRISQLNDDDGNIDYTSVRPFHLTLLVQNKTGLKNLYKIV
SEAHTKYFYRVPRVPRSLIMRYREGLLIGSACQNGEVFDAILRGKTGEELEQIAEFYDYL
EIQPPLHYKPLLRNEIISSLESVKDYHRTIIEVGKNLGKPVVATGDVHFLNPEDAIFRDI
FLKAQKDPNADDQPPLYFMSTDEMLDAFDYLGPELAQEIVVENTNQIAAMIEDVSPVPDQ
LYTPKIEGAEQEIRDMCYVKARQLYGDVLPEIVEKRLEKELNSITTHGFAVIYLISHKIV
KKSLDDGYLVGSRGSVGSSFVATMSDITEVNPLPPHYRCPSCKYSEFIADGSVGSGFDLP
DKECPSCGTQLDKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQAQAHAYTKVLFGEDYVY
RAGTIATVAEKTAFGYVKKYAEERGWNLRNAEMTRLVQGCTGIKRTTGQHPGGILVVPDY
MDVYDFCPIQFPADDKDAEWRTSHFDFHSIHDNLLKLDILGHDDPTVIRMLQDLTGLDPK
TIPTDDPKVMSLFSGTEALTVDPNHPVTPERIRSKTGTYGIPEFGTKFVRQMLEDTKPST
FAELLQISGLSHGTDVWLNNAQKLIQDNVCKLKDVIGCRDDIMVYLIYAGLEPSLAFKIM
ESVRKGKGLTPDMEDEMKRNNVPNWYIWSCKQIKYMFPKAHATAYVLMAVRIAYFKVHYP
LEFYATYFSVRADDFDLDIMGRGYDAIRAKIEEIEAKSFQASPKEKSLLTVLEMALEMTA
RGFCFLPLSLYDSDATKFKVVKERNGLLPPFAALDGVGDSAAKGIAEAASQGEFLSVEDL
QERSRASKTVIELLDAHGCLEGLPSSNQLSLSLLL
NT seq
4428 nt
NT seq
+upstream
nt +downstream
nt
atgcaacaggatgatttcatgaacgagtctgcacagcagaatgaagtgaatttgccgaga
gaagtcgttgaacggacggtttcccgggtggtcgtgaaccctgcgggaaaccgggtggac
attcacttgatgccacttgaattcgcgactgtcgacgtggcagaagtacagcgcgagtgc
atccgatatctgcgcgattatcgcgcactgcaggcggcttcgctgtgttttggagaatac
gacgcgaccgtttccctccacctcgcctacacaccgagtccatatgcgccgtccaccgtg
gagtgcatggtggagtcgcttatcgattggtatcaagaagaagagctggtcgccgcgacc
tggttgcgcaaagcagaacggagccttgctgacgggcggctcaccttctttgtcgggaac
gatgcggaacggctgtcgctcgagcgcaaaggggcactcgtctggttatctgaccagatg
cgcagggtatttggggtcgaactttccatcacatcgacagtggaccgtgctgcagaggat
aagactcaggcactgcgtcaaaagttgcgcgatgaagaacgcaaacacgtcgaacaagtg
atgatcgaacaagagcaggcgcagcgcgaacaggcacaggcggctgagaaggaagcgtcg
tcgtcgtttcaggggaacggcgggggatatcggcgggaacggcggaatccagatgagcca
gtagagccgctgcacatcggtcgggcgattgacggcccgctgacgtcgatgaaggagatt
caggacgagatgcgccgcgtggcggtcgagggccgggtgttccagtcggaagtgcgcacg
ttgccgagtggtcgcacgctggttcagttcaacatcacggataacgccgattcgatcacg
gccaagatgtttgtgaacaacgaacggcaactcgaagcgctgtccaacttgaaggacggc
gtctacgttcgcgtacagggacaggtacagtacgacacgttcctcaaagagcttgtcctg
ctcattcaggatatgcgccctgccgagggcaaagtgcgaacggacacggcaccggtcaag
cgcatcgaactgcatgcccacacgccgatgtcttcgctcgacggcgtggttcctgtcaaa
gatttgattggacaagcggccaagtggggacataccgccatcgcgattacggatcacggg
gtcgtccaatcgtttcccgaggcgtacagtgtggccaagaagaacaacctcaagtgcctg
cttggcctggaggcgtacgtagtgaatgatggcgttccaatcgtctaccaattgaacgcg
gacaacgacgtcgccatcgatgactccaccacgtgggtcgtgtttgacacggagacgaca
ggtctcaattcggcggagaacacactcattgaaatagccgccgtcaaggttcgcggcaac
gaaatcgtcgaagagtggacagaactcatcgacccggaagtgccgattagtaagaagatc
tccgaactcacgcatatcaccaatgacatggtgaaaggcaagcggaagttgcacgaagtg
ctgcctgacttcaaagaatttgtcggggatgccgtgctcgtcgcgcacaatgcggaattc
gacttggcgttcttgcgtgcgtgtgcgaagcgcgtcgggatggagccgtggaccaacgtc
gtactcgatacgctcccgctcgcgcgcaaactgtacccacatgagcggaattaccgcttg
ggcacaatggcgaagaaatttgcggtggagctcattaacgcgcaccgtgcgttagacgat
acggtcgcgctcgcgaaagtctatcaatacatgttaaaagatgcggtaaacagtggcttt
acacggatttctcagttgaacgacgacgatggaaacatcgattacaccagcgtccgccca
tttcacctgactttgctcgtgcagaataagaccggtttgaagaatctgtacaagattgtg
tcagaggcgcacaccaagtacttttaccgcgttccacgcgttccgcgcagcctcatcatg
cgctatcgggagggcctcctgattggttcggcgtgtcagaatggcgaggtgtttgacgcg
attttgcgcgggaagacaggagaagaactcgagcaaatcgccgagttttacgattaccta
gagattcagccgccgctgcattacaagccgctcttgcgcaacgagatcatttcttcgctg
gagtcggtcaaggactatcatcggacgattatcgaagtcggaaagaaccttggaaagccg
gtcgtcgcgacaggggacgtgcactttctcaatccggaagatgcgattttccgggatatc
ttcttaaaggcgcaaaaagatccgaacgcagatgatcagccgccgctgtacttcatgtcc
acggatgaaatgctcgacgcgttcgattatctcggacctgagctggcgcaggaaatcgtg
gtcgagaatacgaatcagatagccgctatgatcgaggacgtatcacctgttccggatcag
ctgtacaccccgaagatcgaaggggcggaacaggagattcgcgacatgtgctatgtgaag
gcgcggcaactttatggggacgtgttgccggagatcgtcgaaaagaggctggagaaagag
ctcaactccatcacgacgcacggttttgcggtgatctacttgatttcgcataaaatcgtg
aaaaagtccctggacgatggttatctggtcggctcgcgggggtctgtcggctcatcgttc
gtcgccacgatgtccgatatcacagaagtcaatccgctgcctccgcactatcgctgtccg
agctgcaaatacagcgagttcattgcggatggatcagtcgggtccgggtttgacctgccg
gacaaggagtgcccgtcgtgcgggacacagctcgacaaggatggtcacgatatcccgttt
gaaacgttcctcgggtttaagggggacaaggtccctgatatcgacttgaatttctcgggc
gagtatcaagcacaggcgcacgcgtacacgaaggtgctctttggtgaggattatgtgtat
cgcgcggggacgattgcgacagtcgctgagaagacggcctttggctacgtgaagaagtac
gcagaggaacggggttggaatctgcgaaacgcggagatgacgaggctcgtacagggttgt
actggcatcaagcggacgactggtcagcatcctggcggcattctcgtcgtgccggattac
atggacgtctatgatttttgcccgattcagttcccggcagacgacaaggatgcggagtgg
cggacgtcgcactttgactttcactccattcacgacaacctgctcaagctcgatattctc
ggccacgacgatccgacggtcatccgcatgcttcaggacttgacggggctagatccgaag
acgattccaacggatgacccgaaagtgatgtcgttgttctcgggaacagaggcactgacg
gtggacccgaatcacccggtgacaccagagcgcattcgctcgaagacggggacgtatggc
atccctgaattcggcacgaagttcgtccgccaaatgctcgaggacacgaaaccgagtacg
ttcgcggaattgcttcagatctctggtctgtctcacgggacggacgtctggttgaacaat
gcgcaaaagttgattcaagacaacgtctgtaagctcaaagatgtcatcggttgccgtgac
gacatcatggtctacttgatctacgcggggctcgagccgtcgctcgcgtttaaaatcatg
gagagcgtacgtaagggaaaagggctcacacccgacatggaagacgagatgaagcggaac
aatgtgccgaactggtacatctggtcgtgcaagcagatcaagtacatgttcccgaaggca
cacgccacggcatacgtgttgatggcggttcgcatcgcgtacttcaaagtgcactacccg
ctcgagttttacgcgacgtatttttccgttcgcgcagacgattttgatttggacatcatg
ggcagaggttacgacgcgattcgcgccaagatagaggagattgaagcgaagtcgttccaa
gcttcacctaaggaaaaatcattgctcacagttctcgagatggcactggaaatgaccgct
cgcggtttttgcttcttgcccttgagtctctatgactctgacgcgaccaagtttaaggtt
gtgaaggaacgcaatggattgttacctccgttcgcagcgctggacggggttggcgattcg
gcagcgaaaggcatcgcggaggcggccagtcaaggggagttcctctccgttgaagacctg
caagagcgttcgcgcgcctcgaaaacggtcattgaactgctcgatgcgcacggctgttta
gaaggcctgccgtcctcgaaccaactctcgttgtcgctgttactgtag
DBGET
integrated database retrieval system
