Anoplopoma fimbria (sablefish): 129089970
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Entry
129089970 CDS
T09102
Symbol
nfkb1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04010
MAPK signaling pathway
afb04210
Apoptosis
afb04218
Cellular senescence
afb04620
Toll-like receptor signaling pathway
afb04621
NOD-like receptor signaling pathway
afb04622
RIG-I-like receptor signaling pathway
afb04623
Cytosolic DNA-sensing pathway
afb04625
C-type lectin receptor signaling pathway
afb04920
Adipocytokine signaling pathway
afb05132
Salmonella infection
afb05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
129089970 (nfkb1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
129089970 (nfkb1)
04218 Cellular senescence
129089970 (nfkb1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
129089970 (nfkb1)
04621 NOD-like receptor signaling pathway
129089970 (nfkb1)
04622 RIG-I-like receptor signaling pathway
129089970 (nfkb1)
04623 Cytosolic DNA-sensing pathway
129089970 (nfkb1)
04625 C-type lectin receptor signaling pathway
129089970 (nfkb1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
129089970 (nfkb1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
129089970 (nfkb1)
09171 Infectious disease: bacterial
05132 Salmonella infection
129089970 (nfkb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
afb03000
]
129089970 (nfkb1)
Transcription factors [BR:
afb03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
129089970 (nfkb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_4
Ank_5
Ank_3
Death
Motif
Other DBs
NCBI-GeneID:
129089970
NCBI-ProteinID:
XP_054453388
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All DBs
Position
4:complement(25910627..25940537)
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AA seq
942 aa
AA seq
DB search
MAGDDHYLNTTHQMFDNIIMDPLWDMQNFHVMSQTTSMRTVDGPYLQIVEQPKQRGFRFR
YGCEGPSHGGLPGASSEKNSKTYPAVKISNYQGPARVVVQLVTALTQQPQLHAHSLVGKQ
CDKGICITDLQPKDSNISFPNLGILHVTKKNVAKTLEERMVEAFRMGYNCGVFIHPDIDA
LQGEVRVARDLSDHQRSVISSAASLQAKEMDLSVVRLMFTAFLPNSDGGFSRRLEPVVSE
PIYDSKAPNASNLKIVRMDRTAGCVSGGEEVYLLCDKVQKDDIQVRFYEEDDSGVTWEAL
GDFSPTDVHRQFAIVFKTPKYRDQNLLKPTSVFVQLKRKSDNETSEPKPFTYHPQIIDKE
EVQRKRQKTLPNFQDFSGHGGGGGLYRGGGGGGPAAGGGPGSAGGGGGGYFQGFTTYNYG
GAGGGGGGGGVGGGGGFSTGYSAALGGGGIKHASEGDAADDSDPDDDSGSGVVLRAVAQP
GGLEEGERTEEGGVSVEEPEPHGDERLVQATSRQLEALFQYSVTGDSAYLLAAQRQLMTA
QDEDGDTGLHLAVLHSQHEALKSLTQVVFALPGEEVLNMRNHLYQTPLHLAVITQQREAV
EALLLAGADPTLTDRHGNTALHLASWLEGGGGGMVQFLLQHEEMRELLDHTNTAGLCAIH
LAVLANQLPSLRELLEGGANVEAQERSCGRTALHLATEIDNVSLAGCLLLEGNAKVDCFT
FNGSTPLHIAAGRGSLKLTALLMAAGADPQKENFEPLFFREEDCCDEEKEVEDEDEGYIP
GTTPLNMAATTQVLELLNGKEYEPRYPQTTFTPSQGDLVNLDVEVKQQVCRALESEGCWE
NLAHSLGLGILNTAFRLSPSPAKTLLDSYEVSGGTVRDLLAGLRSVGECRALSVLMEALR
CHDDEEMQATNQTSGQSLVRDLKADVRIDSGVCDSGVELSTA
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggctggagacgaccattaccttaatactacccaccagatgttcgacaacatcataatg
gatccgctgtgggacatgcaaaatttccacgtgatgtctcagaccacgtccatgcggaca
gtggacggaccgtacctgcagatcgtggagcagccaaaacagcgtggcttcaggttcagg
tacggctgtgaaggtccgtctcacggcggtttaccaggagcctccagcgagaagaacagc
aagacctaccccgccgtcaagatcagtaactaccagggtccggcccgggtggtggtccag
ctggtgacggcgctgacccagcagcctcagcttcacgctcacagtctggtgggaaaacag
tgcgacaaagggatctgcatcacggacctgcagcccaaagactccaacatcagtttcccc
aacctgggcatcctccatgtgaccaagaagaacgtggccaagaccctggaggagaggatg
gtggaggccttcaggatgggatacaactgtggcgtcttcatccaccccgacatcgacgcc
ctgcagggggaagtccgggtcgcccgagacctcagcgaccaccagcgcagtgtgatcagc
agcgcggcgtccctccaggctaaagagatggacctcagcgtggttcggctcatgttcacc
gcgttcctcccaaacagtgacggaggtttctccagacgactggagcccgtcgtgtctgaa
ccgatctacgacagcaaggctccgaacgcctccaacctgaagatcgtgaggatggatcga
accgccggctgtgtgagcggaggagaggaggtctacctgctctgtgacaaagtccagaaa
gatgacatccaggttcggttctatgaagaagacgactcgggggtgacctgggaggctctg
ggagatttctcccctacagacgtccacagacagttcgccatcgtgttcaagactccgaag
tatcgagaccagaaccttctgaaacccacgtctgtgttcgtccagctgaagaggaagtcc
gacaacgagaccagcgaacccaaacccttcacctaccaccctcagatcatagacaaggag
gaggtgcagaggaagagacagaagacgttgccaaacttccaggacttcagcggccatgga
ggaggtggaggtctgtaccgaggaggaggtggaggaggtcctgctgcaggaggaggacct
ggttctgcaggaggtggaggaggaggttacttccagggcttcaccacctacaactatggc
ggagcgggaggaggaggaggaggaggaggagtaggaggaggtggaggattctccacagga
tactcagctgctctgggaggaggaggcatcaaacacgcctctgagggcgacgcagcagac
gacagcgatccagacgatgactcggggtcgggggtcgtgctcagagctgtagcccagcca
ggaggcctggaggagggggagaggactgaggagggaggggtcagcgtggaggagccagaa
ccacacggagatgagcggttggttcaggcgaccagcagacagttggaggctttgtttcag
tactcggtcaccggagactctgcgtatctgttggctgcacagcgtcagctgatgacggcg
caggacgaagacggagacactgggctccacctggcggttctccacagccagcatgaggcg
ctgaagagtctgactcaggtcgtctttgctctgcctggagaggaagtgctcaacatgagg
aaccacctctaccagactcctttgcacctggccgtgatcacccagcagagggaggcggtt
gaagcgctgctattggccggcgccgacccaactctgacggatcgtcatggcaacacggcg
ctccacctggcgtcctggctggaaggaggaggaggagggatggtccagtttctactgcag
catgaagagatgagagagctgctggaccacaccaacacagcaggtctgtgtgcgatccac
ctggcggtcctggccaatcagctgccttctctcagggagctgctggagggcggggctaac
gtggaggctcaggagcgaagctgtggacggaccgccctccacctcgccaccgagatcgac
aacgtgtcgctggccggctgcctgctgctggagggaaacgctaaggtggactgcttcacc
ttcaacggctccacccccctccacatcgctgcaggacgaggctccctcaagctgacggct
ctcctgatggctgcaggagccgaccctcagaaggagaactttgagccgctgttcttcagg
gaggaggactgctgtgatgaggagaaggaggtggaggatgaagatgaaggctacatccca
ggaaccactcctctcaacatggccgccaccactcaggtgttggagcttctgaatggaaaa
gaatatgaacccagatatccacagacaaccttcacaccttctcaaggtgacctggtgaac
ctggacgtggaggtgaagcagcaggtgtgtcgcgctctggagagtgaaggatgctgggaa
aacctggctcacagtctgggtctcgggatcctcaacacggccttcaggctgagcccctcc
cccgccaaaacactgctggacagctacgaggtttcaggtgggacggtcagggacctgctg
gctggtctcaggtcagtcggtgagtgcagagctctgagcgtcctgatggaggcgctgcgt
tgccatgacgacgaggagatgcaggcgaccaaccagacgagtggtcagtctctggttcgg
gatctgaaggcggacgttcggatcgacagcggggtctgtgacagcggggtggagctatcc
acagcgtga
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