Anoplopoma fimbria (sablefish): 129092208
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Entry
129092208 CDS
T09102
Symbol
polr1b
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2 isoform X1
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
129092208 (polr1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afb03021
]
129092208 (polr1b)
Enzymes [BR:
afb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
129092208 (polr1b)
Transcription machinery [BR:
afb03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
129092208 (polr1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpa2_4
RNA_pol_Rpb2_2
DUF1186
Motif
Other DBs
NCBI-GeneID:
129092208
NCBI-ProteinID:
XP_054456034
LinkDB
All DBs
Position
6:23656879..23663871
Genome browser
AA seq
1165 aa
AA seq
DB search
MDSSLKWNNLPTAPSLKNLTERGFGVLKDSQHAAVQDLTKAHIESFDQAVTDGLSRVVQA
IPPLEFTFKDDRFSLAFVEATVYNPVVAKGSICRDMKVFPAECRGRKCTYKGKVVADVSW
SINGVPKGIIKQSMGQVPIMVKSKLCNLHGMSPKELVQHHEEAEEMGGYFIVNGNEKVIR
MLIMPRRNYPIAMQRQKWKSRGQGYTQYGISMRCVREEHTAVNMNLHYLENGTVMLNFIY
QKELFFLPLGFALKALVDFTDFQIYQELIKGREDNSFYKSCASEMLRVVMEEGCTTRSKV
LNYLGERFRVKMSLPDWYTNEQCANFLLNECICIHLKSDIEKFYLLCLMTRKLFTFAKQE
CMEENPDSIMCQEVLTPGQLYLMFMKERLSAWLLSVKMSFDKRGSRLAGGWTADNVMKIF
NMGTDLTKPFEYLLATGNLNTKTGLGMLQNTGLCVVADKLNFIRYLSHFRCVHRGAAFAK
MRTTSVRKLLPESWGFLCPVHTPDGEPCGLMNHMTAICEIVASTLATTSLPALLCSLGVT
PVDGSPGQAFSDCYPVVLDGAIVGWVEKDLAPVVVDSLRRFKVCLLYDVYKFNCQYHPHC
VSRELIFKNKNPQVMKEKRIPPWTEIVLVPKTGKASLYPGLFLFTTPCRMVRPVRNLALG
QQELIGTFEQLYINVGIMENEIEPGVTTHQELFPHSMLSVVASFIPYSDHNQSPRNMYQC
QMGKQTMGFPLHSFMDRSDNKLYRLQTPQSPLVRPYMYDHYNLDNYPSGTNAIVAVISYT
GYDMEDAMIVNKSSWERGFAHGSIYKTELVDLADKVRGEDSVVFGTKLGDPKVNGKLDAD
GLPHIGSTLQYGDPFYSYINLNTGQTTINFYKSQEVCVVDNIKICSNDTGSGRFKRVCIT
VRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMAPDILFNPHGFPSRMTIGMLI
ESMAGKSGSLHGLSHDATPFTFSEESSALEYFGEMLKAGGYNYYGTERLYSGVSGQELEA
DIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPVGGRNIQGGIRFGEMERDALLAHGS
SFLLHDRLFNCSDRSVTQVCVDCGSLLSPLLEKPPPYWSSLRHRKIVCTLCGKSDSIDSV
SVPYVFRYFVAELAAMNIKVKLDVK
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggactcatcactaaagtggaataatttacccacagctccgagtctaaagaacctgacg
gagagagggtttggggtcctgaaggattcccagcatgccgctgttcaggacttaacaaaa
gctcacatcgagtcgtttgaccaggctgtcactgacgggctcagccgcgttgtgcaggcc
atccctcccttggagttcacattcaaagatgacaggttcagccttgcctttgttgaagcc
accgtctacaacccagtggtcgccaaagggagcatctgcagggatatgaaggtgtttcca
gcggagtgcaggggaagaaaatgtacatacaaagggaaggtggtggcagacgtcagctgg
tcaatcaacggagtcccaaaaggcatcataaaacagtccatgggccaggtgccgatcatg
gtgaagtctaagctgtgtaacctgcatggaatgtcccccaaagagctagtacaacaccat
gaagaggcggaggaaatgggaggctatttcatcgtgaatggaaatgagaaggttatccga
atgctgatcatgccaaggaggaactatcccattgccatgcagagacagaagtggaagagc
aggggccagggatacactcagtatggtatttccatgcgttgcgtgagggaagagcacacc
gccgttaacatgaatctacattatttggaaaacgggactgtgatgctgaacttcatttac
caaaaagagctgttcttcctcccactcggctttgcactgaaggccctggtggacttcaca
gattttcaaatctaccaggaactgatcaagggccgcgaagacaattccttctataaaagc
tgtgcgtccgagatgctgcgcgttgtcatggaggagggctgcaccacccgcagcaaggtg
ctcaattacctcggagagcgcttcagggttaagatgagccttcctgattggtacactaac
gaacagtgcgccaactttctgcttaatgagtgcatctgtatccacctgaagtcagacata
gagaagttctacctgctgtgtctgatgaccaggaagcttttcacgttcgccaagcaggag
tgtatggaggaaaacccagacagcatcatgtgtcaggaagtgctcactcctggtcaactc
tatctcatgtttatgaaggaaagattgtctgcctggttgctgtctgtgaagatgtccttt
gacaagagaggcagcagactggcaggaggatggaccgctgataatgtgatgaagatattc
aacatgggcactgacctgaccaaaccctttgaatatctgctggccacagggaacctcaac
accaagacaggccttggcatgctgcagaacacaggcctgtgtgtcgtagccgacaagctc
aacttcatccgctacctgtcccacttccgctgcgtgcacagaggggcagcattcgccaag
atgaggaccacttctgttcgtaagctgctgcctgagtcctggggcttcctgtgtcccgtc
cacacaccagatggagagccttgtggcctcatgaaccacatgacggccatctgtgagatt
gtggcatcaaccctggccaccacatccctgcctgctctgctctgttcccttggtgttact
ccagtggatggatctcctggccaagccttttcagactgctaccccgtggtccttgacggg
gccatcgtgggctgggtggagaaggatttagctccagttgtggtcgactccctgcgcagg
ttcaaggtatgtctactgtatgacgtatacaagttcaactgtcagtaccacccacattgt
gtgagcagagagctgatatttaaaaacaaaaaccctcaggtgatgaaagagaagaggatc
cctccctggactgagattgttctggttcctaaaacaggcaaggccagcttgtacccaggc
ctgttcctcttcaccacaccctgccgtatggtgcggcccgtacgcaacttagctcttggc
cagcaagagttgattggcacctttgaacaactttacatcaatgtgggcatcatggagaat
gagatcgagccgggagtgaccacacaccaggagctcttccctcacagtatgctcagcgtg
gtggctagcttcatcccgtactcggaccacaaccagagtcctaggaacatgtaccagtgt
cagatgggtaagcagacaatgggtttccccctgcactcattcatggaccgctccgataac
aagctgtaccggctccagaccccacagagcccactggtcaggccctacatgtacgaccac
tacaacctggacaactaccccagcggcacaaacgccatcgtagccgttatatcctacacc
ggctacgacatggaagatgccatgattgtgaacaagtcatcgtgggagagaggcttcgcc
catggaagcatctacaagactgagctggtggacctggcggacaaagtgaggggagaagac
agcgtggtgtttgggaccaagctgggtgaccctaaagtaaatggaaaactggacgctgat
ggacttccacacattggatccacacttcagtatggagaccccttctacagctacatcaac
ctgaacactggccagaccactatcaacttctacaagagccaagaggtctgcgtcgtggac
aacataaagatctgcagcaacgacactggctcaggccgttttaaacgggtctgcatcacc
gtacgagtgccacgaaaccccaccatcggggacaagtttgccagtcgccacggtcagaag
ggcatcctgagtcgcctgtggccggccgaggacatgcccttcacagagagcggcatggct
cctgacatcctgttcaacccccacggcttcccctcccgcatgaccatcgggatgctgatc
gagagcatggccggcaagtcgggctccctgcacggcctgagccacgacgccacgcccttc
accttctcagaggagagctctgcgctcgagtactttggtgaaatgctcaaagcaggcgga
tacaactactacggcacggagcggctctacagcggagtgagtggccaggagctggaggcc
gacatcttcattggagtcgtctactaccagcggctacgtcacatggtctccgacaagttc
caagtgaggaccaccggagcgagggacaaggtgaccaaccagccggtgggagggaggaac
atccaaggtggcatccggttcggggagatggagcgagatgccctgctcgcccacggctcc
tctttcctgcttcacgatcggctcttcaactgctcggaccgatcagtgactcaggtgtgc
gtcgactgtggcagcctgctctcccctctgttggagaaaccaccaccctactggtcgtcc
ttgcgccaccgtaagatcgtctgcacactgtgcggcaaaagtgactccattgactcagtg
tctgtcccgtacgtcttccgctactttgtggccgagctggcagcaatgaacatcaaagtc
aaattagatgttaagtga
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