Anoplopoma fimbria (sablefish): 129094113
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Entry
129094113 CDS
T09102
Name
(RefSeq) LOW QUALITY PROTEIN: nucleoprotein TPR-like
KO
K09291
nucleoprotein TPR
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129094113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129094113
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
129094113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
GAS
Motif
Other DBs
NCBI-GeneID:
129094113
NCBI-ProteinID:
XP_054458124
LinkDB
All DBs
Position
8:complement(3129618..3163639)
Genome browser
AA seq
2532 aa
AA seq
DB search
MAAVLLQVLERTELNKLPKGAQNKLEKFVTELQNANEELRTQQERFKADSEQQYFDIDKR
LAESQEQILSVTRDLQTLKEENKKLNEELSTLKGIEGETPEDKPAQQQTKAKYEIEAEKR
ELARLLEKRTQEVENLTEDVKRLNEKHAETSKVKTELQLKLDSIQSSEASVQHRENRMEQ
EKELHEKKIEWLTAELKTKTEELLNTNRDKGKEILELQGGLKNSKEQVTRLEGQLASLKQ
TSERQAKRSEDLNNKLKQAKDEQSAMEEKYRNEINAHIKLSGLYKGSAADTEKKNQELSR
AVEELSKLVKDTGEASKTLEKKSSEEVELKTRLEAELREKIKKIEKELENATVKASGKHC
CGPSLTEEQLDTMCPSATAIAAIVKPGMKFFDLYNAYAECQTQLQLEQQETRRVSRVLDE
IVMEVESKAPVLKRQREEYESMQRSMASLCNKLEQARTEIYSLQKEKEEAKQCCDSMERD
KLRTERQLEDTSAQVCALLVELEEARGNQVTREDGSSANISSTSEVISPRQLSFRSVEEL
QRQNQSLLRRLKELEEEKDRQQKQATSARVSELEASVDKLRKEVEQLREQRNQQKQLADS
SARQRDMYKALLTQSTGFSLPPQGPDSSSQPANVRPSVPATRSAPQRAAAAESAQTTQAK
AALKQLSDAYTLYKKEKAENDRMLNETNDRLQKQLTDLSSSHAKLTSQLEFSSKRYDMLQ
DNVSAYRREISALQDRNQKMSATTQRHEHIIHTMSQDLRQANEKLALEEVRVENLTKERD
MLRNAESRLSRDKEAMLAEQRNQNLLLTNLKSIQLTMERTETQTRQRLNDKIEHLEAEVA
SMKTRLDQEVAQRHALGRTMDAQLLEAKKQLENQNTLQQKTRELLRGTEQQVAALKAQLA
SASSSETVAASGTTTTTTTPASRAAALRAPLRVRSPVPAASQQLSQSEQELAEVRGLLRT
AEEQKGELSEQLHNANATVEQYRAVVLTLEDSLKKEKESRCPLELRLKESEELQKQLEKR
ILEVENMKQHEREERRKAVDAVEKQVSELQRSLKSSQAEQQEALERAASAVTLEQKAIQD
SLLQTKLAGEAQAKYERELMLHAADVEALQELKKRSQQEAARKRELEEQLSKTSSLLREK
TAALNAVEKQIKDDLTNKTRRCAELGKQNALLHQQMDEMATRIRQQQNQQQQQQLDLSFS
EEGKTTEQILEILRFVRREKEIALAQCEASDGEALRYKQRVEHQDRELKELQEALNAERE
NMQATAKTLAQQEEQLKKMETIGALQETTRMLKMDRDKVEQELQQAQAKVTKLQSDISPL
HHSLSMLSEKNGSLQADKRILEEDLKRWKAKTQQLASQQKDGDVEERQKLATEREAQQRR
ITQLAEETAKLKTELARSSASSNTAQSQLQGFRDSVARLTSERDTLKTAIDTKNKDILEK
SRTITQVKKIGRRYKTQYDELKAQHDKLVEETAAKAGSESGRSQEEQQEVTKAQEELKKT
VEELNALKEEARKKLEEAQKTQQEQEEAKKEIQQSKEKFQEVQNQLTQKQNQLTQVQSQL
SQTQTQQQQNHNQLTQSQKELQQAKTHSQQVQNQLKSAQSQSQARQNQIQQIQKELQQAK
EALQQNITKQKELQQTHQSSQQSHNQEVSNLKTALSQAESKVTEFQGHLDSLQKLVGERE
ADIKRLQEQLTEANQANEASGATPANQSQSSQSNQPGDANAASDANQALQEELAKLRQEL
SESRNTEEQLRQQIAEKEEKTKKIFMGAKSKINQLNGAKEKLSQEIEELKQNKEEMEVRM
NALKSQYEGRFLRLDRELRELRETQAQSEPREEPQDQSGAKVADQTRSSDQTRQISLKSP
AQDRGSSSLSDPPTANIRPTTSTPSPSSKPSPSPGSKATPRASIRPMVTPATVPIPTPTA
TVMPTTQTDSQEALMSSGASVHSTSSSLVNTSITQPTSTQATAFVQPTQQQAANQDAGPS
MEAERPSTSSSLSGTGSKRGREEEDEEEESRPESSQTPPTTKKLRLKPSIALQMEADEEI
EGELRDDGERQDSPDDSQELPDDCFPVLAEEDEDIEEEGVSQSVPSDMMSSQGSAITRDV
IVIDTDSESQESREGEDQQEDDGEEEDDEEEEEEEEDDDGYKEEEEGDEDEDDTGDSGMR
GGEEDNEESRDAEEEGGEGEPSGASNAEQTTCGASSDSQRPSEASQSNDGSSGATSESDA
PRDHIHXPPTSTAPSPSPSSSLTPRLPHPRRPPHPLPPRLYIQPPAPELGPPHTQRQSSQ
LRRPSVGRGPQLTPGIGSMQHFFDEDDRMVPSTPTLVVPHRTDGFAEAIHSPQVAGLSTR
FRFGPPEDLLPQASASHSDLGQLASQGGLGMYESPLFLAAHDEDGGGRSVPTTPLQVAAP
VTVFTESLPSDGSDNMASQSVPMVTTSTGMASAADDGDEVFMEHEGEGPGMESSLESQTD
MESTGQQSDDASLPSTSQDPDTSSATQRRTVPSSQLVRETXGGRMEARTLLTHRGTFFRA
GRGGAMGRGGFT
NT seq
7599 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgtcctgcttcaggtcctggagcggacggagttgaataaactcccgaaaggc
gcccagaacaagctggagaagtttgtaacggagctgcagaatgctaacgaggagctccgg
acgcagcaggagcgcttcaaagcggacagtgaacagcagtactttgacattgacaagaga
ctggcagaaagtcaggaacagatcctgtcagttaccagagacctgcagacactcaaggag
gaaaataaaaagctcaatgaagagctgagcactctgaagggaatagagggagagacccct
gaagataaaccagcacaacagcaaaccaaggccaagtatgagatcgaggcagagaagaga
gagctggcgaggctgctggagaagagaacgcaggaggtggaaaacctcactgaggatgtg
aagcgtctgaatgagaagcatgcagagaccagcaaagtgaagacagagctgcagctcaaa
ctggacagcatacaatcatctgaggcttctgtacagcaccgagagaatcgcatggagcag
gagaaggagttgcacgagaagaagattgagtggttaacagcagaactgaagaccaaaacg
gaagagctgttgaacaccaacagagacaaaggcaaagagatactagagctgcaaggtggt
ctgaagaacagcaaggagcaggtgaccagactggaaggacagcttgcctctctgaagcaa
accagtgaaagacaggccaaaagatccgaggacctcaacaacaaactgaaacaggctaaa
gatgagcaaagtgccatggaggagaaataccgtaatgagatcaacgctcacatcaagttg
tcaggcctctacaaggggtcagcagcagacacggagaagaagaatcaagaactgagcaga
gctgtggaagagctcagcaagctggttaaagacaccggggaagccagtaagaccctagaa
aagaagtcgtcagaggaggtggaactaaagacacgtctggaggcggagcttagagagaag
atcaagaaaatagagaaggagctggagaacgccacggtgaaggcttctggaaaacactgc
tgtggaccatcactgaccgaggagcagttggacaccatgtgtccatcagccactgccatc
gctgccattgtcaagcccggcatgaagttctttgatctgtataatgcttatgcagaatgt
cagactcagcttcagctggagcagcaggagaccaggagggtaagccgagttctggatgag
atcgtcatggaggtggagtccaaggcccctgtcctcaagcgtcagagagaggagtacgag
agcatgcagagatccatggcctccctgtgcaacaagctggaacaggctcgaacggagatc
tacagtttgcagaaagaaaaagaggaggccaagcagtgctgtgatagcatggagagagac
aaactgaggacagagagacagctagaggatacatctgcacaggtgtgtgctcttctggtg
gagctggaggaagccagaggtaatcaggtgaccagggaagacggcagctccgccaacatt
tccagcacctctgaggtcatcagtcctcgccagctgtccttccgcagcgtggaggagctg
cagaggcagaaccaaagcctgctgagacggctgaaggagctggaggaggaaaaggacaga
cagcagaaacaagccacatcagcgcgcgtgtcagagttggaggccagcgtggacaagctt
cgtaaggaggtggagcagctgagggagcagaggaaccagcagaaacagctggccgactcc
agcgccagacagagagatatgtacaaggccctgctgacacagagcaccggctttagcctg
cctcctcaaggtcccgattcttcatcccaacctgcaaatgttagaccatcagtgccggct
actcgatctgctcctcagagagccgccgctgctgagtcagcacagaccactcaggctaaa
gctgcgttaaaacagctgagcgacgcctacactctgtacaagaaggagaaggccgagaac
gacaggatgttgaacgaaacgaacgaccggctgcagaagcagctgacggatctcagctcc
agccacgccaagctcacctcgcagctcgagttcagcagcaagaggtatgacatgctccag
gacaatgtgtcagcctaccgcagagagatctccgccctgcaggacaggaaccaaaagatg
tctgcaaccactcaacgacacgagcacatcatccacacgatgagccaggacctgaggcag
gccaacgagaagctggcgctggaagaggtgcgcgtagagaacttgaccaaagaaagagac
atgttgagaaatgcagagagtcgactcagtcgagacaaggaagccatgctggccgagcaa
cggaaccagaacctgctgctcaccaacctcaagtccatacagttgacgatggagcggaca
gagacgcagactcgccagcggctaaacgacaagatcgagcatctggaggcagaagtggct
tcaatgaagaccaggctggaccaggaagtggctcagagacacgcccttgggcgcaccatg
gatgcccagttgttagaagcaaagaaacagctggagaaccagaacaccttgcagcagaag
accagggagctgctgcgtggcaccgaacagcaggtggcagcactgaaagcccagctggct
tctgcatcatcctctgagaccgttgccgcctccggcaccaccaccaccaccaccactcca
gcttccagagccgctgccctcagagcaccactccgagtacgctctccagtgccagcagcc
tcccagcagctcagccaatcagagcaggagctggcagaggtgagaggcctcctgcgtact
gctgaggaacaaaagggcgaactgtcggagcagctgcataacgctaacgctactgtggag
cagtacagggctgtggtactgactctggaagacagtctgaagaaagaaaaggagtcccgc
tgccctctggagctccggctgaaggagtccgaggagctgcagaagcagctggagaagagg
attttggaggtggagaatatgaagcaacatgagcgagaggagaggaggaaggccgtggac
gcagtggaaaaacaagtgtctgagctgcagcgcagtctgaagtccagccaggcagagcag
caggaggcgctggagagagctgcttcagctgtcacactggagcagaaagccatacaggac
agcctgctgcagacgaagctggccggagaggcacaggccaagtacgagcgggagctcatg
cttcatgccgcggacgtggaggctctgcaggagctgaagaagagatcccagcaagaagca
gcgcggaagagggagttggaggagcagctgagcaagacatcttccctcctgagggagaaa
accgcagctttgaacgcggtggagaagcagattaaggacgatctgaccaataagacccgt
cgctgtgcggagctggggaagcagaacgctctcctgcaccaacagatggatgaaatggcc
accaggattcgtcagcagcaaaaccagcagcagcagcagcagctggacctgtcattcagt
gaggaggggaagaccactgagcagatactagaaatactcaggtttgtgcggcgtgagaaa
gagatcgccctggcccagtgcgaggcgtcggacggagaagccctacgctacaaacagcga
gtggagcaccaagacagagagctgaaggagctgcaggaggccctgaacgccgagcgggag
aatatgcaggctacagccaagactctggcccagcaggaggagcagctgaagaagatggag
accatcggtgctctccaagaaaccaccaggatgctgaaaatggaccgagacaaagtggaa
caggagctgcagcaagcccaggctaaagtcactaagctccagtcagacatcagcccacta
catcactctctgtccatgctgtcagagaaaaatggctccctgcaggctgataagaggata
ctggaggaagacctgaaacgctggaaggctaaaacacagcaactggccagccaacagaaa
gacggcgatgttgaggagcgacagaaactcgccacagagagagaagctcagcagagacgc
atcacacagctagctgaagagacagccaagctgaagactgagctggccagatccagcgcc
agcagtaacactgctcagtctcagctgcagggcttcagagactctgtggcccgtctgacg
tcagagagagacaccctgaagacagcaatagacacaaaaaacaaggacatcctggagaag
agcaggaccatcacccaggtcaagaagatcggacggcgctacaagactcagtacgacgag
ctcaaagcccagcacgataagctggttgaggaaacggctgctaaagcaggaagtgagtca
ggacggagccaagaggagcagcaggaagtgactaaagcccaggaggagctcaagaagacc
gtagaggagctgaacgcactgaaagaggaggcgcggaaaaaactggaggaggcccagaag
acccagcaggagcaggaggaggccaagaaggaaatccagcagagcaaggaaaagttccag
gaggtccaaaaccagctgacccagaaacagaaccagctgacacaggtccagtcccagttg
tcccagacccagacccaacagcagcaaaatcacaaccagctgacccagagtcagaaggag
cttcagcaagccaagacccacagccagcaggtacagaaccagctgaaatcggctcagtct
caatcccaggcccgtcagaaccagatccagcagatccagaaggagctccagcaggctaaa
gaggcccttcagcagaacatcacaaaacagaaagagctgcagcagacccaccagagcagt
cagcagagccacaaccaggaagtcagcaacctcaagacggcgctcagccaagcagagagc
aaggtgactgagtttcagggccacctggacagtctgcagaagctggttggagagcgtgag
gcagacatcaagcgtctgcaggagcagctaacggaggctaaccaggcaaatgaagctagc
ggagccaccccagccaaccagagccagagttcccagtccaaccagcccggcgatgctaat
gctgctagtgacgctaaccaggcgctccaagaggagctggcaaaactcagacaagagctg
tctgagagcaggaacacagaggagcagctcagacagcagatcgctgagaaagaggagaag
actaagaagatcttcatgggagccaagagcaaaatcaaccaactaaacggtgctaaggag
aagctgagtcaggagatagaggagttgaaacagaacaaagaggagatggaggtgagaatg
aacgcccttaagtctcagtacgaaggacgctttcttcggctggacagagagctgagggag
ctgagagagacccaggcacagtcggagccccgagaggagccacaggaccagagtggagct
aaggtggctgatcagaccagatcttcagaccagaccagacagatatctctgaagagtcct
gcccaggacagaggaagctccagcctgtctgaccctccaactgccaacatccgccccacc
acaagcactccgtctccgagcagcaagcctagcccctcccctgggagcaaggccacaccc
cgggccagcatccggccaatggttaccccagcaaccgtccccatcccaacacctaccgcc
accgtcatgccgaccacacagactgacagccaagaggcgctgatgagttcaggagcctct
gtacactccaccagctccagtctggtgaacacgtcaataactcagccaaccagcacccag
gccacagcttttgtccagcccacccagcagcaggcagccaatcaggacgcgggtcccagt
atggaggcggagcgaccgtccacgtcgtcctccctgagtggaacaggttcaaagcgaggc
agagaggaagaggacgaggaagaggagagcagaccagagagttcacagacgcctccgacc
acaaaaaaactacgtttaaaaccatcaatagcactgcagatggaagctgatgaggagatt
gaaggagagctgagggatgacggagaacgacaggattcaccagacgacagtcaggaactt
ccagacgactgtttccccgttttagccgaagaggacgaggacatcgaggaagaaggcgtg
tcccagtctgtcccctctgatatgatgtcctctcagggctccgccatcacgagggacgtc
attgtgattgacacggacagcgagagccaagagagcagggagggggaggatcagcaggag
gacgacggtgaagaggaagatgatgaagaggaggaggaagaagaagaagacgacgacggg
tacaaggaggaagaggagggcgatgaagacgaggatgacactggcgacagcgggatgagg
ggaggagaggaggacaacgaggagagcagggatgcagaagaggagggaggggagggcgag
ccgtcgggtgcctccaacgccgagcagacgacgtgcggagcgtcctcagactcgcagcgt
ccttctgaggcatcacagagcaatgatggcagcagcggcgccacgtcggagtccgacgcc
cccagagatcacatacacnttcccccgacctccactgcaccctccccctccccctcctcc
tccctcacgccccgcctcccccacccacgtaggccccctcacccccttccaccacggctc
tacatccaaccaccagctccggagctgggacccccgcacacacagagacagtcctctcag
ctgcgcagaccatcagtaggacgcggaccgcaactgacccctggaatcggcagtatgcaa
catttctttgatgaggacgacagaatggttcccagtactcccactctggtggtcccacac
cgcactgatggctttgccgaggctatacactctcctcaggtagcaggtctgtccaccagg
ttcaggtttggacctccagaggacctgctgcctcaggcgtcagcctcacactctgacctg
ggacagctggcctctcaaggaggtctggggatgtatgagtcccctctgttcctggctgct
cacgatgaggacggaggaggaaggagcgtccccaccacgccgctacaggtggctgcacca
gtgaccgtcttcacagagtctctgccttcagacggttcagacaacatggcgtcccagtcg
gttcccatggtaaccacctccaccgggatggcttctgctgcagatgatggagatgaggtc
ttcatggagcatgagggagagggtcctggtatggaatcctctttggagagccaaacagac
atggagtcaacaggacagcagagtgatgatgcatcactgccgtctaccagccaggaccct
gacaccagcagtgccactcagcggcgcaccgtgcccagcagccagctggtaagagaaacc
nnaggggggaggatggaggccaggacgttactcacccacagaggaactttctttagggca
ggaaggggaggagccatgggcagagggggcttcacctga
DBGET
integrated database retrieval system
