Anoplopoma fimbria (sablefish): 129094527
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Entry
129094527 CDS
T09102
Symbol
vcam1b
Name
(RefSeq) vascular cell adhesion protein 1b
KO
K06527
vascular cell adhesion molecule 1
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
129094527 (vcam1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
afb04090
]
129094527 (vcam1b)
04091 Lectins [BR:
afb04091
]
129094527 (vcam1b)
CD molecules [BR:
afb04090
]
Proteins
129094527 (vcam1b)
Lectins [BR:
afb04091
]
I-type lectins (Siglecs)
129094527 (vcam1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
Ig_2
I-set
ig
V-set
C2-set_2
Ig_C17orf99
ICAM1_3_5_D2
ICAM_N
Motif
Other DBs
NCBI-GeneID:
129094527
NCBI-ProteinID:
XP_054458710
LinkDB
All DBs
Position
8:complement(28780399..28795488)
Genome browser
AA seq
848 aa
AA seq
DB search
MDSSVGCLNPQRSETSLLSVCRISLLTAVLLMSSCCVQGLHVEVFPRRPLFRLGERQQLV
CRVQDCPTMPSVSWSVLGDRPLAASVSTNRTWSVVTFDPVMIEHEGPLLCRVSCGGENKQ
IKTSVQVYSFPSAPRIRGQDHLSLGLESILTCEVSDLYPAELLTLNWLRGDAVLRSIMGD
PGSGSVRSEYRFTPLELDSGGNISCRATMDLQDLPAENRTKVTTVPLNLLYAPVVTAISD
SVLVMAGSSLTLICTAEGNPEPTISWSFRSVDGRSERRHVGRQLGLPEVSLSEAGRYDCE
ARNSEGNQTAAVEVKIHAPPTNTSLSVSPGEEVLEGQQVTLTCRSDGAPPTTLVLRREGA
ELQRTDPASSSLSFSLSSAQLEDSAKYQCEASNQHGSQLVTSSVTVSAHPLQVEVSPAVS
AAETGSGLVLTCRAAGCLHPPTFTWTTDQDRILLRGVDQDRILLREAEQDRILLRGAEQD
GLSVLHLQDLDLQDEGGYRCEAECDSVIRTSTVQVQVYSFPSGPVLEDPGPVLLGQEAVF
HCNVSSVFSANQMRILWLTENTTLMSELFGFSGSLQNVSSLLRLAVQEDQRTLTCRAELL
MENGDVRRSRRTSVPLQVHYPPRRTSLSVSPGEEVLEGQQVTLTCRSDGAPPTTLVLRRE
GAELQRTDPASSSLSFSLSSAQLEDSAKYQCEASNQHGSQLVTSSVTVSAPPRNTTVLVL
PSTVVQEGQNVTICCQTVSFPLSAVVLRKLTNGRELYSTNGTFLLVNVTARDSGLYQVNV
TNDLGFQVKNFSISVRERSTSPPSLTTVLIPVVCIAAGLAAAALLLDYLRRSRKKGFYQL
PQSAPSSA
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atggattcatcggtcggatgtttgaatcctcagaggagtgagacgtctctgctgtcggtc
tgcaggatctctctcctcacagctgtgctgctgatgtcatcgtgctgtgttcagggtctg
catgtggaggtgtttcccagaaggcctctgttcaggttgggggagcgtcagcagctggtg
tgtcgggtccaggactgtcccacaatgccgagcgtttcctggtctgtgctgggggaccga
cctctggcggcctccgtcagcaccaacaggacctggtctgtggtgacctttgaccctgtg
atgattgagcatgaaggaccgctgctgtgtcgggtcagctgtggaggagagaacaagcag
atcaagaccagcgtgcaggtttactccttcccatcagcccctcggatcaggggccaggac
cacctgagtctggggctggaatccatcctcacctgcgaggtgtcagatctttaccccgct
gagctgctgaccctcaactggctcagaggtgacgccgtcctgcggagcattatgggagat
cctggatctggctcagtccggtctgaatacagattcacccctctagaactggactcggga
ggaaacatcagctgcagagccacgatggacctgcaggaccttccagctgagaacagaacc
aaagtgaccaccgtccccctaaacctgctctatgctcctgttgtcacggcgatatcagac
tctgtgttggtgatggccggctcttcgctcactctcatctgcacagcagagggaaacccc
gagccgacgatcagctggagcttcaggtcggtagacggccggtctgagaggcggcacgtt
ggccgacagctgggcctcccagaggtgagtctgtctgaggccggacggtacgactgtgag
gcccggaactctgaggggaaccagacggcagcggtggaggtcaaaatccatgctccgccc
accaacacctccctctcagtgagtccaggtgaggaggtgctggagggtcagcaggtgacg
ttgacctgccgctcagacggagctccgcccaccacgctggtgctgaggagggagggggcg
gagctccagaggactgaccccgcctcctcctcgctctccttcagcctctcctccgcccag
ctggaagactccgccaaataccagtgtgaagcctccaaccagcacgggtcccagctggtc
accagctccgtcaccgtctcagctcatcctctgcaggtggaggtgagtcctgcggtctca
gcagcagagacgggttcaggtctggtcctgacctgcagagccgccggatgtctccacccc
cccaccttcacctggacgacggatcaggaccggatcctcctcaggggggtggatcaggac
cggatcctcctcagggaggcggagcaggaccggatcctcctcaggggggcggagcaggac
ggtctgtccgtgcttcacctgcaggacctggacctccaggatgagggaggatacaggtgt
gaggccgagtgtgactccgtcatcaggacctccaccgtccaggtccaggtctactcattc
ccgtctggtccagttctggaggatcctggtccagtcctgctgggtcaggaggcggtcttc
cactgtaacgtgagcagcgtcttctcggccaatcagatgaggatcctgtggctgacggag
aacacaacgctgatgtctgagttgttcgggttctccggttccctacagaacgtctcgtcc
ctccttcggctggcggtccaggaggaccagcggactctgacctgcagggcggagctgctg
atggaaaacggagacgtgaggaggtccaggaggaccagcgtcccccttcaggtccactat
cctcccaggagaacctccctctcagtgagtccaggtgaggaggtgctggagggtcagcag
gtgacgttgacctgccgctcagacggagctccgcccaccacgctggtgctgaggagggag
ggggcggagctccagaggactgaccccgcctcctcctcgctctcctttagcctctcctcc
gcccagctggaagactccgccaaataccagtgtgaagcctccaaccagcacgggtcccag
ctggtcaccagctccgtcaccgtctcagctcctcccagaaacaccacagtcctcgtcctg
ccgtctacggtggtccaggagggacagaatgtcaccatctgctgccagaccgtgagcttc
ccgctgtccgccgtggtcctgaggaaactgaccaatgggagggagctctattcaaccaat
ggcaccttcttattggtcaacgtcacggccagagactcggggctgtaccaggtcaacgtg
accaacgacctcgggttccaggtcaaaaacttcagcatcagtgtcagagagaggagcacc
agtcctcccagtctcaccactgtcctcatcccagttgtctgcattgccgctgggctagca
gctgctgctctgctcctcgactacctgaggagatccaggaagaaaggattctaccagctg
ccccagtcggcccctagttcagcctga
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