Anoplopoma fimbria (sablefish): 129098165
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Entry
129098165 CDS
T09102
Symbol
pold1
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03030
DNA replication
afb03410
Base excision repair
afb03420
Nucleotide excision repair
afb03430
Mismatch repair
afb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
129098165 (pold1)
03410 Base excision repair
129098165 (pold1)
03420 Nucleotide excision repair
129098165 (pold1)
03430 Mismatch repair
129098165 (pold1)
03440 Homologous recombination
129098165 (pold1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
afb03032
]
129098165 (pold1)
03400 DNA repair and recombination proteins [BR:
afb03400
]
129098165 (pold1)
Enzymes [BR:
afb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
129098165 (pold1)
DNA replication proteins [BR:
afb03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
129098165 (pold1)
DNA repair and recombination proteins [BR:
afb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
129098165 (pold1)
MMR (mismatch excision repair)
DNA polymerase delta complex
129098165 (pold1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
DNA_pol_B_2
DNA_pol_B_exo2
divDNApol
Motif
Other DBs
NCBI-GeneID:
129098165
NCBI-ProteinID:
XP_054463122
LinkDB
All DBs
Position
11:complement(2425482..2437215)
Genome browser
AA seq
1105 aa
AA seq
DB search
MDFKRRNGGPFVGGASQAKRGKSTGEWEDSPSQFEEELSMFEEAELEAEETEGQAGHDVI
PVGDLFSADLNPRWRRPDAPSLDPSSDTLVFQQIDLDYYLGATVAGMPGQSQGNVPIIRM
FGVTDSGISVCCHIHGFAPYFYVPAPSGFTSDHLGEFKRELNSVVLKDMRSNKDNISVTV
LAVDITRKESMYGYHGKRSLEFLRITMAMPRLIAPAKRLLEQGFKFGPFPIQGYPSYEAN
IDFEIRFMVDSDVVGCCWIELPKSKYRVREEKSTGATDSRYPGKVSLCQYEVDVGWTDLI
SHPAEGDWQRIAPLRVLSFDIECAGRKGIFPEADKDPVIQIASMVQRQGETEPFIRTVFT
LQSCASIVGSQILCFTQEKQLLQSWAEFLRTVDPDIITGYNIQNFDFPYLLNRAATLKVN
LFPYLGRVRGIKSVLRDLNFQSKQMGRRENKIINMEGRVQFDLLQVLLRDYKLRSYTLNA
VSFHFLQEQKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLLQKLMCVINYMEMA
RVTGVPLTYLLSRGQQIKVVSQLLRQAMKHDLVMPVVKTEGGEDYTGATVIEPEKGYYSV
PIATLDFSSLYPSIMMAHNLCYTTLLQKGSLEKQSLSPEDFIKTPTGDMFVKSSVRKGLL
PEILENLLSARKRAKTELKKETDPFKRQVLDGRQLALKISANSVYGFTGAQVGKLPCLEI
SQSVTGFGRQMIEQTKQLVESKYTISNGYQGDAKVIYGDTDSVMVKLGVPTVREAMDIGT
EAAEWISSHFTPPIKLEFEKVYYPYLLINKKRYAGLYFSGSADTHEKMDCKGIETVRRDN
CPLVANLINTCLQKILIDRDPQGAVAHAKEVISDLLCNRIDISQLVITKELTRTAQEYAG
KQAHVELAERMRKRDAGSAPNLGDRVPYVIIKAAKGVAAYMKSEDPIFVLENTIPIDTQY
YLEQQLSKPLLRIFEPILGESKAENVLLKGDHTRCKTVLTSKIGGLMAFAQRRSTCIGCK
AVLKTDAAVCDFCRKRESELYQKEILHMNTLEERFSRLWTQCQRCQGSLHEDVLCTSRDC
PIFYMRKKVQKDLDDQSKLVNRFGW
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atggactttaaaagacgcaatggtggcccctttgtgggcggtgcgtcccaggccaaacgg
ggtaaatcaactggtgaatgggaagacagtccatcgcagtttgaagaggaattgtccatg
tttgaggaagcagagctggaggcagaggagacggaggggcaggcaggccatgacgttata
cccgtaggcgacctcttctcagcagaccttaaccctcgttggcggcggcctgatgcccct
tcactggacccgtcgtcggatacgttggtgtttcagcagattgatctcgactattattta
ggggcaacggtggctggcatgcctggtcagtcacaaggaaatgtcccaatcattcggatg
tttggggtgacagacagtggcatcagtgtgtgctgccacatccacggctttgccccttac
ttctatgttccggcaccaagtggtttcacatctgatcacctgggtgaatttaaaagagag
ttgaactctgttgtcttgaaggacatgcgatccaataaggacaacatctctgtcacagtg
ttggctgtggacatcacccgcaaagagagcatgtatggttaccatgggaaacgcagtctg
gagtttttgcggataaccatggcgatgcctcgtctcatcgccccagcaaagagactgctg
gagcagggcttcaagtttggacctttccccatccagggttacccatcctatgaggccaac
atagattttgagataaggtttatggtggatagtgatgtggtgggatgctgctggattgaa
cttcccaaaagcaagtacagagtgcgtgaagagaagagcacgggggccacagattctcgg
tacccaggcaaggtgtccttgtgtcagtatgaggtggatgtgggatggacagatttgatc
agtcaccctgcagagggagactggcagaggattgcaccactcagggtgctcagctttgac
attgagtgtgcaggaagaaaaggaatcttcccagaggcagacaaagaccctgtgattcag
atagcgtcgatggtgcagcggcagggtgagacagagcccttcattcgcaccgtgttcact
ctccagtcctgtgccagcattgtgggctcacagatattgtgctttacacaggagaaacag
ctactgcagagctgggcggagtttttgaggactgtggacccagacatcatcactggatac
aacattcaaaactttgactttccctacttgctcaacagggcagctactttaaaggtaaac
ctctttccctaccttggccgagtgcgaggcattaagtcggtcttgcgagacctaaacttc
cagagcaagcagatgggccgcagagagaacaagatcattaacatggaaggccgggttcag
tttgatctactgcaggttctcctcagggactataaactgcgctcgtacacactgaacgct
gtgagtttccacttcctgcaagaacagaaagaggatgtgcagcactccatcatcactgat
ctgcagaatggaaacgagcagacgcgtcgacggctggctgtctactgcctcaaagacgcc
tacctcccgctgcgcttgctgcagaagctgatgtgtgtgattaactacatggagatggcc
agagtgaccggcgtgcctctcacctacctgctctcaagaggacagcagatcaaagtcgtc
tctcagcttctacgacaggccatgaaacacgacctggtcatgcctgttgtaaagacagaa
ggaggagaagactacactggagccactgtcattgagccagagaaagggtattacagcgta
cctattgccaccctggatttctcctccttgtatccgtccattatgatggctcacaatctg
tgctacacaaccctgcttcagaagggctcactggagaaacagagcctctcaccagaggac
ttcatcaagactccgactggcgacatgtttgtgaaaagctctgtaaggaaaggacttcta
cctgagatcctggaaaacctactgtctgccaggaagagggccaaaacagagctaaagaag
gagactgatcctttcaagaggcaggtgctggacggccgacagctggcgctcaaaatcagt
gcgaactctgtctatggcttcactggagctcaggtgggcaagctgccctgcttggagatc
tcacagagcgtcacaggttttggaagacagatgattgagcaaaccaaacagctggttgag
tccaagtacaccatttccaatggttaccaaggtgatgccaaggttatttatggggacaca
gattccgtcatggttaagcttggggttcccacagtgagggaggcgatggatatcggaacg
gaggcagcagagtggatatcgtcccatttcacaccgcccatcaaactggagtttgagaag
gtgtactacccgtacctgctgatcaacaagaagcgttacgcaggcctttacttctctggc
agtgcagacacacatgaaaagatggactgtaaaggcattgaaactgtccgcagagacaat
tgccctctggtcgctaaccttatcaacacatgtctgcagaaaatcctcatagacagggat
ccccagggtgctgtggctcatgctaaagaagtgatctcagacctgctgtgcaaccgcatc
gacatcagtcagcttgtcatcaccaaggagctaacgcgaactgcccaggagtacgctggc
aaacaggcgcacgtggagctggctgagaggatgaggaaaagagatgctggcagcgcccca
aacctgggagaccgagttccatatgtcatcattaaggctgcaaagggagtagcggcttac
atgaagtcagaggacccgatctttgtgctggagaacaccattcccatcgacacacaatac
tacctggagcagcagctgtccaaacccctgctgagaatatttgagcccatcctgggagag
agcaaggcagaaaacgtcctgctcaagggagaccacacgcgctgtaagactgtcttgacc
tcgaagatcggcggcctcatggcatttgctcagaggaggagcacctgtatcggctgcaaa
gctgtgctaaagacggatgcggctgtgtgcgatttctgtaggaagagggaatctgaactg
tatcaaaaagagatcttgcacatgaacacactggaggagcgtttctctcgcttgtggact
cagtgtcagcgttgtcagggctcccttcatgaggatgtgctctgtacaagtcgggattgt
cccatcttttacatgaggaagaaggttcagaaagatttggatgaccagagcaagctggtg
aatcgttttggatggtga
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