Anoplopoma fimbria (sablefish): 129102133
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Entry
129102133 CDS
T09102
Symbol
notch1a
Name
(RefSeq) LOW QUALITY PROTEIN: neurogenic locus notch homolog protein 1
KO
K02599
Notch 1
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
129102133 (notch1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
hEGF
EGF_CA
Ank_2
EGF_2
Ank
NOD
Notch
NODP
Ank_4
Ank_5
Ank_3
EGF_3
DL-JAG_EGF-like
JAG1-like_EGF2
Motif
Other DBs
NCBI-GeneID:
129102133
NCBI-ProteinID:
XP_054468102
LinkDB
All DBs
Position
14:complement(6628523..6652429)
Genome browser
AA seq
2477 aa
AA seq
DB search
MYRFFVRLTFLIPAIVISQGLKCSLSTELCINGGRCEATSNGNGECKCPADYVGNRCQHP
SPCSPSPCRNGGECRAVSHGNTFDFRCECRLGFTDRLCLTPTNHACMSSPCRNGGTCDLI
TLSVFHCRCPPGWSGKTCQLANPCASNPCANGGQCSAFDSTYICTCPPTFHGQTCKQDIN
ECAQTPSICLNGGVCVNEVGSFNCRCPQEYTGQHCETPYMPCSPSPCHNGGTCVQKGDTT
YDCSCLPGFTGQHCDHNIDDCPGHNCQNGGVCVDGVNTYNCRCQPHYTGQYCTENVDECE
LMPNACQNGGTCHDTHGSYHCVCVNGWTGDDCSENIDDCASAACYRGATCHDRVASFFCE
CPHGRTGLLCHLDDACISNPCQKGSNCDTNPVNGKAICTCPPGYTGSACNLDIDECSLGA
NPCEHGGRCLNTKGSFQCKCLQGYEGPRCEMDVNECMSNPCQNDATCLDQIGGFHCICMP
GYEGVFCHINADECASQPCLNNGKCIDKINSFHCECPKGFSGSLCQVDIDECASTPCKNG
AKCTDGPNKYTCECAEGYSGQHCETDVNECYSDPCHYGTCKDGLASFTCYCRPGYTGRLC
ETNINECISQPCKNGGTCQDRENTYICACPKGTAGYNCEINLDDCKSKPCDYGRCIDKIN
GYECACEPGYTGTMCNINIDDCAINPCQNGGTCVDGINSFTCLCPEGYNDATCLSQVDEC
GSNPCIHGRCQDLINGYKCTCDSGWSGPNCDINNNECESNPCMNGGTCKDMTSGYHCTCR
AGFTGPNCQTNINECASNPCLNQGTCIDDVAGYKCNCLLPYTGDNCEILLAPCSPRPCKN
GGVCKEAEDYQSFSCICPEGWQGQTCEIDINECVKSPCRNGAVCHNTMGGYQCKCQPGYT
GQKCETDNDDCKPNPCSNGGLCRDGINTFTCTCLPGFRGGRCEQDINECESNPCRNGANC
TDCVNSYTCTCPPGFSGINCEVNTNDCTDSSCFNGGTCVDGINAFTCLCLPGFTGSYCQY
DINECDSKPCLNGGSCLDSYGTYMCTCPHGYIGVNCQILVRWCDSSPCKNGGSCWQQGAS
YTCQCQTGWTGLYCDIPSVSCEVAAKRQGVEVAHLCRNSGQCLDAGNTHYCRCQAGYTGS
YCQEQVDECSPNPCQNGAACTDYLGGYSCECVPGYHGVNCSKEINECQSQPCQNGGTCID
LINTYKCSCPRGTQGVHCEINLDDCNPSSDPLTNEPKCFNNGRCVDRIGGYQCVCPAGYV
GERCEGDVNECLSDPCDPRGSYNCIQLTNSYRCECRTGYTGQRCDKVFDGCKGRPCKNGG
TCAVASNTPHGFICKCPPGFTGSSCEYDSRSCGNLNCRNGGTCVSGHLGPRCLCPPTFTG
PECQTPTDSLCISNPCYNGGTCQVTPDAPFFQCSCPSNFNGLLCHILDYSFVGGFGRDIT
PPPEVEVSCEIPQCDEWAGNHICDSLCNNHACGWDGGDCSLNFDDPWQNCSAALQCWRYF
NDGKCDGQCNSPGCLYDGFDCQGQEGQCNPLYDQYCKDHYADGHCDQGCNNAECEWDGLD
CAINMPEKLADGHLVLVVHIPPEQLKNRSSTFLREISSVLHTNVVFRRDAKGEPMIFPYY
GNEQDLVKHNVLRRSADGWPEWASMPSNVLGQVKESMSAMVSPRKRRELDPVQVKGSVVY
LEIDNRQCYQQSSECFQSATDVAAFLGALATSGNLNVPYIEAVTSVRPTXSSSELYPMYV
VFMGLAALGFICLGVLVSRKRRREHGQLWFPEGFKASEPSKKKRREPLGEDSVGLRPMKN
SDINLMDDNQNEWDDQDPDCRRFRLEEQAMLDLSDRTDHRKWTQQHLDAADLRIASIAPT
PPQGEIENDCMDVNVRGPDGFTPLMIASCSGGGLETGISEEEEDPSAEIISDFIYQGANL
HNQTDRTGETALHLAARYARSDAAKRLLESSADANVQDNMGRTPLHAAVAADAQGVFQIL
IRNRATDLDARMHDGTTPLILAARLAVEGMVEELINCHADANATDDSGKSALHWAAAVNN
VEAVMVLLKNGANKDMQDNKEETPIFLAAREGSFETAKVLLEHFSNREITDHLDQLPRDI
AQERMHHDIVRLLDEYNVVRSPGLHSGPLSSSSLSPPLCSPNDYLSNLKPNLSVKKVRKL
SSGGKGGKDGGKDNRMKKKKSLDGKGNLLDTSAVLSPVDSLESPHGYMSDVASPPMTSPF
QQSPPMSLNHLQGNGDHMGQMSMGKDMGCMSFDLNPPRLSHMPVSSPGSQVTTSIGGSRG
GQCDWISRMHPGVGQQGGFTQGPPISHSMMGALHGVSTATLSQIMGYQNLQTSHLGSPAH
MMQHAHSRQLQHQNSNSTTAGQSLNQGFPNVELNGSDMQQNNGRSMSIHTVMPQETQILG
NQFLTPPSQHSYSSPMDNTPNHQLQVPDHPFLTPSPGSPDQWSSSSPHSNMSDWSEGISS
PPTSMHSQMNLIPDQFK
NT seq
7434 nt
NT seq
+upstream
nt +downstream
nt
atgtatcgtttctttgtgagactaacatttctgattcctgcaatcgtcatctcacaaggt
ctgaaatgctccctgtccactgagttatgcatcaatggagggaggtgtgaggccacctct
aatggaaatggagaatgcaagtgtcccgctgactacgtaggcaatcggtgccagcatccg
agcccctgcagcccttcaccctgccgcaacggtggcgaatgccgcgctgtttcccatggc
aacacttttgacttccgctgcgagtgccgcctgggtttcaccgaccggctgtgcctgacc
cccaccaaccacgcctgcatgagctcgccctgtcgcaatggaggaacatgtgacctcatc
accctctctgtcttccactgccgctgcccgcctgggtggtcaggtaaaacctgccagctt
gccaacccgtgcgcatccaatccgtgtgccaacggcggtcagtgctcggccttcgactcc
acctacatctgcacctgcccgccaaccttccacggtcaaacctgcaagcaggacatcaac
gagtgcgcgcagactccctctatctgtctcaatggaggcgtgtgcgtgaacgaggtgggc
tctttcaactgccgctgtcctcaggagtacactggccaacactgtgagaccccctacatg
ccatgcagcccctcgccatgccacaacggaggcacctgtgtgcagaagggagacaccacc
tacgactgtagctgccttccaggtttcacaggtcagcactgtgatcataacatcgatgac
tgtccaggccacaactgccagaacggcggtgtgtgtgtggatggtgtgaacacctacaac
tgccggtgccaacctcattacacaggtcaatactgcaccgaaaatgtggacgagtgtgag
ttgatgcccaacgcctgccagaatggaggaacgtgccacgacactcacggcagctaccac
tgcgtctgcgtcaacggttggacgggcgacgactgcagtgagaacatcgacgactgtgcc
agcgcggcttgttaccgtggcgccacctgccacgaccgcgtagcctccttcttctgcgag
tgtcctcacgggcgcacaggtttgctgtgccacctcgatgacgcctgcatcagcaatccg
tgtcaaaagggttccaactgtgacaccaaccccgtcaatggcaaggcgatctgcacctgt
ccaccaggttataccgggtcagcctgcaacctggacatcgacgagtgctccctcggtgcc
aacccctgtgaacacggtggtcgctgcctcaacactaagggctccttccagtgcaagtgt
cttcaaggatatgaaggccctcgttgcgagatggacgtcaatgagtgcatgtctaatcct
tgccaaaatgatgccacctgcctggatcagattggagggttccactgcatctgtatgcca
ggatatgagggtgtgttctgccacatcaacgcagatgagtgtgccagccaaccttgtctc
aacaatggcaagtgcattgacaagatcaactccttccactgcgagtgccccaaaggtttt
tcggggagtctgtgtcaggtggatattgacgagtgtgccagcacaccctgcaagaatgga
gctaagtgtactgatggtcccaacaagtacacctgtgaatgtgctgaaggttattcagga
cagcactgtgagactgacgtcaacgagtgctactctgacccctgccattatggcacctgc
aaggatggcctagcctccttcacctgctactgccgccctggctacactggccgcttgtgt
gagaccaacatcaatgagtgcatcagccagccctgcaagaatggaggcacttgccaggac
agggagaacacatatatttgtgcttgccccaaaggcacagcaggttataactgcgagata
aacctggacgactgcaagagcaaaccctgcgactacgggaggtgcatcgacaaaatcaac
ggctacgagtgtgcatgtgaacccggctacacaggaacaatgtgtaacatcaacattgat
gactgcgccatcaacccgtgtcaaaacgggggcacatgtgttgacggcatcaacagcttc
acctgcctgtgtccagagggctacaacgacgccacttgtttgtctcaggtggacgagtgt
ggcagcaacccctgcatccacggccgatgccaggacctcatcaatggctacaaatgtacc
tgcgactctggctggagcggccccaactgtgacatcaataacaacgagtgtgagtccaac
ccgtgcatgaacgggggaacctgcaaggacatgaccagcggataccactgcacatgcaga
gctggcttcactggacctaactgccaaactaacatcaacgagtgtgcctccaacccctgc
ctcaaccagggaacctgcatcgatgatgtggctggatacaagtgcaactgtttgctgccc
tacaccggtgacaactgtgagatcctgctggcaccctgcagccccagaccctgtaaaaac
ggtggagtgtgtaaggaagctgaagactaccagagcttctcctgcatctgccctgaagga
tggcaaggtcaaacatgtgagatcgacatcaacgaatgtgtgaagagtccatgccgcaac
ggtgccgtctgccacaacaccatgggtggttaccagtgcaagtgccagccaggttacact
ggccagaagtgtgagacagacaatgatgactgcaaaccaaatccctgcagtaacggcggt
ctgtgccgcgatggcatcaacactttcacgtgcacctgtctgcccgggtttcgtggcggc
agatgcgagcaggacataaacgagtgtgaaagtaacccatgtaggaacggtgccaactgc
accgattgtgtcaacagctacacctgcacctgcccgcccggcttcagtggcatcaactgt
gaggtcaacaccaacgactgcactgacagctcttgcttcaatggtggcacctgcgtggat
ggaattaatgcgttcacctgcctgtgtctacctggattcaccggcagctactgccaatat
gatatcaatgagtgtgactccaaaccgtgtctcaatggaggatcttgtcttgacagttat
gggacatacatgtgcacctgtccccatggttacataggagtcaattgtcagattcttgtc
cgctggtgtgattcctccccctgtaaaaatggagggtcttgctggcagcagggagcatct
tacacctgccagtgtcagactgggtggactggtctctattgtgacatccccagtgtgtct
tgcgaggttgcagccaaacggcaaggtgtggaggtggctcacctgtgcaggaactcaggc
cagtgtctggatgctggaaacacacattactgtcgctgccaggccggctacaccgggagc
tactgccaggaacaagtggatgagtgctcgccgaatccttgccagaacggagccgcctgc
accgattatctggggggctacagctgtgagtgtgttcctggttaccacggtgtgaactgc
tccaaggagatcaatgaatgtcagtcacagccctgtcagaatggaggcacgtgcatcgac
ctcatcaacacatacaagtgctcctgtcccagaggaacacaaggtgtccactgtgagatc
aatttggatgactgcaacccctccagcgacccactgaccaacgagcccaagtgcttcaac
aatggccggtgtgtggaccgcatcgggggctaccagtgtgtgtgcccagcgggctacgta
ggagagcgctgtgaaggcgacgtcaacgagtgtctgtccgacccctgtgaccccagaggg
tcttacaactgcatccagctcaccaacagctaccgctgcgaatgccgcactggatacaca
ggtcagcgttgtgacaaagtgtttgatggctgtaaaggaagaccatgcaaaaatggaggg
acatgcgctgttgccagtaacacgcctcatggtttcatctgcaaatgtccacctggcttc
accggctcctcttgcgagtatgattctcgttcctgcgggaatctaaattgcaggaatgga
ggcacgtgtgtgtcaggccacctaggcccacgctgcttgtgtccaccaaccttcactggg
cctgagtgccagacccccaccgacagcctctgcatctccaacccgtgctacaatggcggc
acgtgccaggtcaccccagacgcgcctttcttccagtgcagctgcccgagcaatttcaat
ggcctgctgtgccacattctggactactccttcgttggaggttttggccgggacatcact
ccacctccagaagtggaggtgagctgcgagattcctcagtgtgacgagtgggcagggaac
cacatctgcgactcgctgtgcaacaaccacgcctgcggttgggacggaggggactgctcg
ctcaatttcgacgacccgtggcaaaactgctccgcggctttgcagtgctggcgctacttc
aacgacgggaagtgcgatggccagtgcaacagccctgggtgtctctatgatggctttgat
tgtcagggacaggaaggacaatgcaacccgctgtatgaccagtactgcaaagaccactac
gctgacggtcactgtgaccagggctgcaacaatgcagaatgcgaatgggacggcctggac
tgcgccatcaacatgccagagaagctcgcagacgggcacttggtcctggtggtccacatt
ccccccgaacagctgaaaaatcgctcttcaaccttcctcagagagatcagcagcgttctc
cacaccaacgtggtgttccgccgtgacgccaaaggagaacccatgatcttcccttactac
ggcaacgaacaggacctcgtcaaacataacgtgctgaggcgctccgctgacggctggccc
gagtgggcttcaatgccctccaatgttttgggtcaagtgaaggaaagcatgtctgccatg
gtcagccctcgcaaacgcagagagctggatcctgttcaagttaaagggtctgtggtgtac
ctggagatcgacaaccgtcagtgttaccagcagtctagtgaatgcttccagagcgccaca
gatgtagctgcattccttggagcgctggccactagcgggaacctcaatgttccctacatt
gaagctgtcaccagtgtgagacctaccncctccagctcagagctctaccccatgtacgta
gtcttcatgggcttggctgcgttgggtttcatctgcctcggtgttctcgtgtctcgtaag
aggcgacgagagcacggccagctttggttccctgaaggatttaaagcgtctgagcccagc
aaaaagaaacgcagagagcctctgggagaggattctgttggattgaggcctatgaaaaac
tctgacatcaacctcatggatgacaatcaaaacgaatgggatgaccaggatccagactgc
aggcgcttcaggttggaggagcaggccatgttggatttgagcgaccgtactgaccacagg
aaatggactcaacagcatctggatgcagctgaccttcgtattgcgtccattgctcctacg
cctcctcagggagagatagagaatgactgcatggatgtgaatgtcagaggaccagatggt
ttcactcccctgatgattgcgtcctgcagcggcggaggactggaaactggtatcagtgaa
gaggaagaagatccctcagcagaaatcatctctgacttcatctaccaaggcgccaacctc
cacaaccagactgaccgcaccggcgaaaccgccctccacctggccgctcgctacgcccgc
tctgatgctgctaaacgcctccttgagtccagcgccgacgccaacgttcaggacaacatg
ggccgcactccgcttcacgctgctgtggctgcagatgcacagggagtgttccagatttta
atccgaaaccgcgccactgatcttgacgcccgaatgcacgacggaacaacaccgctgatt
ctggcggcccgattggctgttgagggcatggtggaggagcttatcaactgccacgccgat
gctaacgccaccgatgattctggtaaatctgctcttcactgggccgcggctgtaaacaat
gtggaggctgtgatggtgctgctgaaaaatggtgccaacaaagacatgcaagacaacaag
gaggagacaccgatcttccttgcggcccgtgaaggaagctttgagacagccaaggttctc
ctggaacacttttccaaccgtgagatcaccgaccatctcgaccagctgcccagagacatc
gcccaggaacgcatgcaccacgacatcgtccgccttctggatgagtacaacgtggttagg
agtcccgggcttcacagcgggcccctaagcagctccagcctctcgccacctctctgctcc
cccaatgactaccttagcaacctcaagcccaacctgtccgtcaagaaggttcgcaaactc
agctccggcggcaaaggaggtaaagatgggggcaaagataatagaatgaagaagaagaag
tccctggatgggaagggtaacttgctagacacgtcggccgtcctctccccggttgattcc
ctcgaatcaccgcatggctacatgtctgatgtggcctctcctcccatgacatcacccttc
cagcagtccccacctatgtctctaaatcacctacaaggcaatggagaccatatgggccag
atgagcatgggtaaggacatgggctgtatgtcttttgaccttaacccgccccgtctctcc
cacatgcccgtgtccagccccggcagtcaggtcacgacatccataggtggcagcagagga
ggccagtgcgactggatctccaggatgcacccaggtgtaggccagcaaggaggcttcacc
caggggccgcccatctcccacagcatgatgggtgctctgcatggcgtcagcactgccacg
ctgtctcagatcatgggctaccagaatctgcagaccagccacctcggctcgcccgcacac
atgatgcagcatgctcattcgcggcagctccagcaccagaactctaactccaccacagct
gggcagtccctcaaccagggcttcccaaatgtcgagctgaacggctcagacatgcagcaa
aacaacggccgctccatgtccatccacaccgtcatgccccaggagacgcagatcctcggc
aaccagttcctcacccctccctcccagcatagctattctagccccatggacaacacacct
aaccaccagctacaggtacccgaccacccgtttctaactccctcccccggctcccctgac
caatggtccagctcgtccccacattccaacatgtccgattggtcggaaggcatctccagc
ccgcctacaagtatgcattcgcagatgaacctgatcccagaccagtttaagtag
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integrated database retrieval system
