Aythya fuligula (tufted duck): 116489972
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Entry
116489972 CDS
T07966
Symbol
CLP1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
aful
Aythya fuligula (tufted duck)
Pathway
aful03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aful00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116489972 (CLP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aful03019
]
116489972 (CLP1)
Enzymes [BR:
aful01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
116489972 (CLP1)
Messenger RNA biogenesis [BR:
aful03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
116489972 (CLP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
MMR_HSR1
ATP_bind_1
AAA_16
AAA_22
AAA_18
TniB
CbiA
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
116489972
NCBI-ProteinID:
XP_032044668
UniProt:
A0A6J3D522
LinkDB
All DBs
Position
5:53758105..53760364
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AA seq
425 aa
AA seq
DB search
MAEEGGEEKKQVAKFELERETELRFEVEASQTVQMELLTGMAEVFGTELTRNKKFTFDAG
AKVAVFTWHGCSVQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEREDERGPRVMVV
GPTDVGKSTVCRLLLNYAVRLGRRPTFVELDVGQGSVSIPGTMGALYIERPADVEEGFSL
QAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQ
ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDDR
IREYFYGFRGCFYPHAFDVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD
MVHHLLSVSMADSADDNISETSVAGFIVVTGVDLERQVFTVLSPAPRPLPKNFLLIMDIR
FMDLK
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggagggcggcgaggagaagaagcaggtggccaagttcgagctggagcgcgag
accgagctgcgcttcgaggtggaggcctcgcagacggtgcagatggagctgctgaccggc
atggccgaggtgttcggcaccgagctgacccgcaacaagaagttcaccttcgacgccggc
gccaaggtggccgtcttcacctggcacggctgcagcgtgcagctcagcgggcgcaccgag
gtggcctacgtgtccaaggacacccccatgctgctctacctcaacacgcacacggccctg
gagcagatgcgccggcaggcggagcgcgaggacgagcgggggccccgcgtcatggtggtg
ggccccaccgacgtgggcaagtccaccgtgtgccgcctgctgctcaactacgccgtgcgc
ctgggccgccggcccaccttcgtggagctggacgtgggccagggctccgtctccatccct
ggcaccatgggcgccctctacatcgagcggccggcggacgtggaggaggggttttcgctc
caggccccgctggtctaccacttcggctccaccacgccgggcaccaacatcaagctctac
aacaagatcacgtcccgcctggccgacgtcttcaaccagcgctgcgaggtgaaccggcgc
gcctcggtgagcggctgcgtcatcaacacgtgcggctgggtgaagggctcgggctaccag
gcgctggtgcacgccgcttccgccttcgaggtggacgtggtggtggtgctggaccaggag
cgcctctacaacgagctcaagagggacctgccccacttcgtgcgcaccgtgctgctcccc
aaatccggcggggtggtggagcgctccaaggacttccgccgcgagtgccgggacgaccgc
atccgcgagtacttctacggcttccggggctgcttctacccgcacgccttcgacgtcaag
ttctccgacgtcaagatctacaaggtgggggcacccaccatcccggactcctgcctgccg
ctggggatgtcgcaggaggacaaccagctgaagctggtgccggtgacgccgggccgggac
atggtgcaccacctgctgagcgtcagcatggccgacagcgccgacgacaacatctcggag
accagcgtggccggcttcatcgtggtcaccggcgtcgacctggagcgccaggtcttcacc
gtgctctcgcccgcgcctcgccccctgcccaagaacttcctcctcatcatggacatccgc
ttcatggacctcaagtag
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