Austrofundulus limnaeus (annual killifish): 106533012
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Entry
106533012 CDS
T06063
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
106533012 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alim03021
]
106533012 (polr1a)
Enzymes [BR:
alim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
106533012 (polr1a)
Transcription machinery [BR:
alim03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
106533012 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Pox_C7_F8A
Nop14
Motif
Other DBs
NCBI-GeneID:
106533012
NCBI-ProteinID:
XP_013884664
UniProt:
A0A2I4CXF0
LinkDB
All DBs
Position
Unknown
AA seq
1678 aa
AA seq
DB search
MLFDKEVPWRRLEGMSFGMYSAEEIRKLSVKAVTNSRFLDAVGNVAPNSLYDLALGPADS
KEVCSTCCQDFNNCPGHFGHIDLPLPVYNPLFFDKLYFLIRGTCLMCHVLTCPRAAIHLL
LNQLKLLNHGAMQEVYQIEQVLNQYMEENPKATGDEIEMVLNDFTNTIVGANDGASENSR
AIKHLVEKKNNLINNFWKNNMTSRRCPSCRCGRVVVRREHNSKIIVTMPSGTKANVTDED
AMAGKRVFLTASTAREHVNQVWEKDGFFLKCLFPGMEETPGSEEKAFHPDLFFLELLVVP
PCRYRPINRLGDQMFTNGQTVNMQAVMKDCVVIRKLLALIAGEKTTEEAEATEPEDQTFL
STIVGQTLPDKLYNVWIHLQSHVNIVFDSDMDKLMTEKYPGIRQILEKKDGLFRKHMMGK
RVDYAARSVICPDMYIETNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNGPSVHPGAS
MVINEDGKRTILSASNFAQREAVAKQLLTPSPGPHKIPMKIVNRHIKNGDVLLLNRQPTL
HRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYTLVSTNQ
QYLVPKDGKPLAGLIQDHMVSGTKMTIRGCFFTRDQYTELVYRGLTDKAGRVKLLPPALL
KPQHLWTGKQVVSTLLLNIIPEKAVPLNLVGKSKIPSKAWIQDPPRAAPGYKPESMCDSQ
VVIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTAYLQLYRGFT
LGVEDILVKPGANMQRKKIIQESLKIGTKALQAAFNLQPBVDPAEARSRWQDAHLNPDQR
DFSMADHKFKEVANQVNNEINKVCMPVGLHTSFPDNNLQLMVQSGAKGSTVNTMQISCLL
GQIELEGRRPPLMPSGKFLPCFQPYDPSPGAGGFVSGRFLTGIKPQEFFFHCMAGREGLV
DTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPRQ
FPFIEDNYEVIRRAQGLDRVLARLDPQRASQHFAAIKRWKAKRELGCPRRGAFLLFSQKK
LAKLRETIQGTDPTSNRDLAVLELVKQWHALDEAGRAKYCRKSCRCPEPTLGLFRPDVCF
GSVSENFHHITEKYLQNKSSESQASVDSHSLRQLLHYKWQRSLCDPGEAVGLLAAQSIGE
PSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSSIKTPMMSVPVLNNKKALKRAKTL
RKKLCRVVLAEVLQKVDVVETMRIKKYQKLRIFKVTFNFLPPDRYRDDKLLTPHQILHFM
EHRFFRLLLEAVRKRTAKLASIAVETRKATLRDKDDVEETAGTAGVGDGEAEEDRDIVDD
QGDEGDADASDAKRRSKQEEEVDYDSEDEAEGDDAEDKEAQGGEEEAQENPESNSVEESQ
AESAGVRLESRLGSSQQMRVNSVLQINSAIESYSFDQEQELWCEVQLALPLNKVHFDLTS
VLSTLAQNAVVMETKGLTRCLLSETTSKSGEKQMVLNTEGINMHEVFKHSDILDINRLYS
NEVHAMANTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGVYKPLNRHAI
QSNSSPLQQMTFETSYKFLKQATMLGSHDQLVSPSACLVVGKLVRGGTGLFELKQPLQ
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atgctgtttgataaagaagtgccatggcggcgcttagagggcatgtcttttggcatgtac
tcagccgaagagatcaggaagttgagtgtgaaggctgtcaccaactccaggtttcttgac
gctgttggaaatgtggctcctaacagtttgtatgatctggctctggggccagcagactcc
aaggaggtttgttcaacgtgctgccaggatttcaacaactgtccgggacactttggacac
atagatctgcctctgcctgtgtacaacccactgttctttgataaactctacttcctgatc
cgtgggacgtgtctgatgtgtcacgtgttaacatgtcctcgagctgccatccacctgctg
ttgaaccagctcaagttactgaaccatggagccatgcaggaggtctatcagatcgaacaa
gtcctgaatcagtacatggaggagaaccctaaagccacaggagatgagattgagatggtt
ctgaacgatttcaccaacaccatagttggagcgaacgatggagcttcagaaaactccaga
gcgattaaacacctggttgaaaagaagaacaacctgatcaataacttctggaagaacaac
atgaccagcaggaggtgtcccagctgcaggtgcggcagggtggttgtgcgacgggaacac
aacagtaagattattgtcaccatgccatcaggaacaaaagccaacgttacagatgaagat
gccatggctggaaagagagtcttcctgactgcgagtacagcccgagaacacgttaaccaa
gtctgggagaaagacggtttcttcttgaaatgtctgtttcctgggatggaagagaccccg
gggtctgaggagaaggctttccatccagacctgttttttctggagctgctggtggtccct
ccctgcaggtatcgtccaatcaatcgactgggtgaccagatgtttaccaacggtcagacc
gtgaacatgcaggccgtgatgaaggactgtgtggtcatcaggaagcttctggctctcata
gcaggagagaaaaccactgaggaggcagaggctacagagccagaagaccagacttttctc
tctaccattgttggccaaacgttaccagataaactctacaatgtgtggatccacctgcag
agccacgttaacatcgtcttcgacagcgacatggacaaactgatgacggagaaatatcct
ggaatcagacagatccttgagaagaaggacggattgttccggaaacacatgatggggaaa
cgagtggactacgctgctcgatcggtcatttgtcccgacatgtacattgaaaccaatgag
ataggcatacccatggtgtttgccaccaagctgacgtaccctcagccggtcacaccgtgg
aacgtgaaggagcttcgtcaggctgttctgaacgggcccagtgttcaccccggagcctcc
atggtgatcaatgaagatggcaaaaggaccatcctgtcagcttccaacttcgctcagagg
gaagctgtcgccaagcagctgctsacgccctctccgggtccacacaagatccccatgaag
atagtaaaccgtcacataaagaacggagatgtgttgttgctcaacagacagcccactctg
cacagaccctctatacaagcccactgcgctcgcatcctcccaggagagaaggtgctgagg
ctccattatgctaactgtaaggcctacaacgctgacttcgatggagatgaaatgaacgcw
cacttccctcagagcgagctgggcagagcagaagcttacacactggtcagcaccaaccag
cagtacctggtccccaaggatggtaaacccttagcaggcctgatccaggaccacatggtg
tcaggaaccaagatgaccatccgaggctgcttcttcaccagagaccagtacactgagctg
gtgtacagagggctgacagacaaggcaggcagagtaaagctgctgcctcctgctctgctc
aaaccacagcacctgtggaccggaaaacaggtggtgtccacgctgctgctgaatataatc
ccagagaaagcggtgcctctgaacctggttggaaaatccaaaatccccagcaaggcttgg
attcaggacccaccacgagctgctcctggatacaaaccagagagcatgtgtgactcacag
gtggtgattcgtcagggcgagctgttggtgggggttctggacaaagctcactacggctcc
tcagcctacgggttggtccactgctgctacgagctgtacggaggggagaccagcgggaag
ctgctgagctgcctggctcgactcttcacagcctacctgcagctgtacagaggcttcact
ctgggtgtggaggacatcctygtgaaacctggggccaatatgcagaggaagaaaatcatt
caggagtccctgaagattggcaccaaagccctccaggcagccttcaacctgcagccarat
gtggatccagctgaggctcggagccgatggcaggacgctcacctcaaccccgaccagaga
gacttcagcatggccgaccacaagttcaaagaggtggccaaccaagtgaacaatgagatc
aacaaggtctgcatgcccgtgggtctgcacacctctttcccagacaacaacctgcagctc
atggtccartcaggagccaagggctccaccgtcaacaccatgcagatctcatgtctgctg
ggtcagattgaactggaggggcgtaggcctcctctcatgccttctgggaagttcctgccg
tgcttccagccctacgacccgtcacctggtgccgggggctttgtttctggcaggttcctc
acaggaatcaaacctcaggagtttttcttccactgcatggctggaagagaaggactggtg
gacacagctgtgaaaacatctcgatcaggatatctgcagaggtgcatcattaagcatctg
gagggattggtggtgcagtacgacctgacggtgagggacagcgatggctctgtggtccag
ttcttgtacggtgaagatggcctggacatccccaagactcagtttctgcagccgagacag
ttccccttcatcgaggacaactatgaggttatcaggagggctcagggcctggacagggtt
ctggctcgtttggacccacagcgtgccagtcaacactttgcagccatcaaacgctggaaa
gcaaaaagagagctggggtgtcctcggagaggagccttcttactgttttcccagaagaag
ctggcaaaactaagagaaaccattcaaggaacagatcccacctcgaaccgagaccttgct
gtgttggagctggtgaaacagtggcacgctctggatgaggccggcagagccaaatactgc
aggaagtcctgccgctgcccagagcccacgctgggtttgttcaggcctgacgtctgcttt
ggatctgtttctgaaaacttccaccacatcacagagaaatacctccagaacaagtccagt
gagagtcaggccagcgtggactcccacagcctccggcagctgctgcactataagtggcag
cgctctctgtgtgacccgggtgaagctgtgggtctgctggcagctcagtccatcggygag
ccctccactcagatgaccctcaacaccttccacttcgccggcagaggagagatgaacgtc
acgctgggaatccctcgtctgagagagatcctgatggtggccagttccagcatcaaaacc
cccatgatgagcgtcccggtgctgaacaacaagaaggccctgaagagagctaaaactctg
aggaagaagctctgcagggtggtcctggctgaggtgctgcagaaggtggacgtggttgag
acgatgcgaattaaaaaatatcaaaagctgcgaattttcaaagtcacctttaacttcctg
cctcctgatcgttaccgtgacgacaagctgttgactccccatcagatcctgcacttcatg
gaacataggttcttccgtctcctcctggaagctgtgaggaagcgcacagccaaactggcc
tccatcgctgtggagaccaggaaggctaccctcagagacaaagatgatgtggaggaaaca
gcaggcacagctggggtgggtgatggagaagcagaggaagacagagacattgttgatgac
cagggggacgaaggagacgctgatgcatcagatgccaagaggagaagcaaacaggaggag
gaggtggactacgacagcgaggatgaagctgagggcgatgatgctgaagataaggaggct
cagggcggggaggaggaggcccaggagaacccagagtccaacagcgtggaggagtctcaa
gctgagtctgcaggagtcagactggagagcagactggggtcctcgcagcagatgagagtg
aactctgtcctgcagatcaactcagccatagagagttactccttcgatcaggagcaggag
ctctggtgtgaggtccagctggctcttcctttgaacaaggtgcacttcgacctgacctcg
gttctgtccacgctggcccagaacgcagtggtgatggaaaccaagggtctgactcgctgc
ctgctgagtgagaccaccagcaagtctggagagaagcagatggtcctgaacacagaggga
atcaacatgcatgaagtcttcaagcacagtgatatcctggacatcaacaggctgtactct
aacgaggtgcatgccatggctaacacgtacggcatcgaggtggctctgaaagtcatcgag
aaggagatcaaagatgtgtttgctgtttacggtatcgaggtggaccccagacatctgtcg
ctggtggcagattacatgtgcttcgaaggcgtgtacaagcctttaaacaggcacgccatc
cagtccaactcgtctcctctgcagcagatgacctttgagacgagctacaagttcctgaag
caggccaccatgctggggtcacatgatcagctggtgtctccctcagcctgcctggtggtg
gggaagcttgtgagaggaggaacgggactgtttgaactgaaacaacctctgcagtag
DBGET
integrated database retrieval system
