Arabidopsis lyrata (lyrate rockcress): 9302438
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Entry
9302438 CDS
T01578
Name
(RefSeq) DNA-directed RNA polymerase III subunit 1
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
9302438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aly03021
]
9302438
Enzymes [BR:
aly01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
9302438
Transcription machinery [BR:
aly03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
9302438
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
9302438
NCBI-ProteinID:
XP_020884300
LinkDB
All DBs
Position
Unknown
AA seq
1376 aa
AA seq
DB search
METKMEIEFTKQPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWKNNYYETNLKPYENG
LLDARMGPPNKKSICTTCDGNFQNCPGHYGYLKLDLPVYNVGFFNFILDILKCICKRCSN
MLLDEKLYEDHLRKMRNPKMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKI
AAQMGIGISHDRSKIHGGEVDECKSAISHTKESTRAINPLTYVLDPNLVLGLFKGMSDKD
CELLYIAHRPENLITTCMLVPPLSIRPSVMIGGTRSNENDITERLKLIIQNNACLHRILS
QPTTSPKNMQVWDTVQSEVAKYINSEVRGVQNQPEKTPLSGLLQRLKGKQGRFRANLSGK
RVEYTGRTVISPDPNLKITEVGIPILMARILTFPECVSRHNIEKLRQCVRNGPNKYPGAR
NVRYPDGSSRTLVGDYRKRIADELTIGCIVDRHLEEGDAVLFNRQPSLHRMSIMCHRARI
MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVA
STQDFLTTSFLITRKDTFYDRAAFSLICSYMGDGMDAIDLPTPTILKPIELWTGKQLFSV
LLRPNASVRVYVTLNVKEKNFKKGEHGFDETMCVNDGWVYFRNSELISGQLGKATLGNGN
KDGLYSILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDVQPGEELNKERKDSIQF
GYDQCHRKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIREATGKACMSGLHWRNSPLI
MSQCGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSFY
SGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCILQ
FTYGDDGMDPALMEGKDGAPLNFDRLFLKIQATCPPRSHHNYLSSEELSQKFEEELVRHD
KSRVCTDAFVKSLREFVSLLGVKSASTPQVLYKASGVTDKQLEVFVKICVSRYREKKIEA
GTAIGTIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRINEIINASKNISTPVISAEL
ENPLELTSARWVKGRIEKTTLGQVAESIEVLMTSTSASVRIILDNKIIEEACLSISPWSV
KNSILKTPRIKLNDNDIRVLDTGLDITPVVDKSRTHFNLHNLKNVLPNIIVNGIKTVERV
VVAEDMDKNKQIDGKTRWKLFVEGTNLLAVMGTPGINGRTTTSNNVVEVSKTLGIEAART
TIIDEIGTVMGNHGMSIDIRHMMLLADVMTYRGEVLGIQRTGIQKMDKSVLMQASFERTG
DHLFSAAISGKVDNIEGVTECVIMGIPMKLGTGILKVLQRTDDLPKLKYGADPIIS
NT seq
4131 nt
NT seq
+upstream
nt +downstream
nt
atggagacgaagatggaaattgaattcactaaacaaccctacatcgaagatgttggtcct
cttaaaataaaaagcataaacttctctgtgctttctgatcttgaggtcatgaaagctgct
gaagttcaagtatggaagaataattactacgagaccaatcttaaaccctatgaaaacggc
ttgttggatgctcgaatgggtcctccaaacaaaaagtctatatgcacaacctgtgacgga
aacttccaaaattgtccgggacactatggatatctgaagcttgacctcccagtttacaac
gttggattcttcaattttatccttgacattttgaagtgcatttgtaagcgctgttccaac
atgcttttagatgagaaattgtatgaagatcacttaaggaagatgcggaatcccaaaatg
gagccattgaagaagactgaattggcgaaagcggttgtcaagaagtgcagtacgatggca
agccagagaattataacgtgcaaaaaatgtggctacctgaatggcatggtaaaaaagatt
gcagcgcagatgggtataggcatcagccatgaccgatctaaaatccatggtggagaggtt
gatgaatgtaaatctgcaatatcccacacaaaggagtctactagagcaataaatcctctt
acctatgttcttgatcctaacttggtgctcgggctttttaaaggaatgagtgacaaggac
tgtgaacttctttatattgcccatagacctgagaatcttatcacaacgtgcatgcttgtg
ccacctttatccatccgaccgtctgttatgattggtggtactcgaagcaatgaaaacgac
ataacagagcgattaaagctaatcattcaaaacaatgcttgtcttcatagaattttaagt
caacctaccacatcgcccaaaaacatgcaagtatgggatacagttcaaagcgaggttgca
aaatacattaacagtgaagtccgtggtgtacaaaaccagccagagaaaacaccactgagt
ggacttcttcagcgtcttaaaggaaaacagggacgtttccgtgcaaacttgtcggggaag
cgtgtcgagtacactggtagaactgttatttcacctgatcccaatctgaaaattacagag
gtaggaattcccatccttatggctcggatcttaacttttcctgaatgtgtttcccgtcat
aatattgagaagttgaggcaatgtgtccgtaatggccctaataaataccctggtgccaga
aatgtcagatatccagatggttcttcaaggactttggttggtgattatcgtaagcgtatt
gctgatgaactgaccattggctgcatagttgaccgccatttagaagaaggggatgctgtt
ctttttaacaggcaaccgagtctgcatcggatgtctatcatgtgtcacagggcaagaata
atgccttggagaacattgaggttcaacgaatcggtttgtaacccatataatgctgatttt
gatggtgatgagatgaacatgcacgtaccacaaacagaggaggctcggacagaggctatc
acattgatgggggtacaaaacaatttgtgcaccccaaaaaatggagaaattttagtagca
tcaacgcaggactttttgacaacttcctttttgataacgaggaaggacacattttatgac
cgtgcagccttttcacttatatgttcttacatgggagatggcatggatgccatagatttg
cccacacccacaatccttaagccaatagagctttggactggtaaacagctttttagtgtt
ttgctgcgtccaaatgcaagtgttagagtctacgtaactcttaatgtgaaagagaagaac
ttcaagaagggagagcatggtttcgatgaaacaatgtgcgtaaatgatggatgggtttat
tttcgaaacagtgagctaatatcaggacaattggggaaggctacgttaggaaatggaaac
aaggatggattatattctattcttctaagagattacaactcccatgctgctgcagtctgc
atgaatcggctagcaaaattgagtgctcggtggattggaatccatggcttctccattgga
attgatgacgtacaacctggtgaagagttgaataaggaaagaaaagatagcatccagttc
ggatatgaccagtgccatcgcaaaattgaagaatttaatcgaggaaatttgcaacttaaa
gctggtctagatggtgcaaaatcattagaagctgaaataacagggattctcaatacaatt
cgagaggccactgggaaggcatgtatgagcggattacattggagaaatagtcccttgatc
atgtcacaatgtggttccaaaggatctcctatcaatatcagtcagatggtcgcatgtgtt
ggtcagcagacagttaatggtcaccgtgctcctgatggatttatagatcgaagtcttcct
catttccctaggatgtccaaatcacctgcagctaaaggttttgttgctaattcgttctac
agtggtcttactgccacagaatttttctttcacactatgggtggacgagaaggtctagtt
gatacagcggtgaaaactgcaagtacaggttacatgtctcgtagactgatgaaagctttg
gaggatctattagtccattatgataacacagtgcgaaatgccagcggatgtatacttcaa
tttacttatggggatgatggaatggacccagcactaatggaaggaaaggatggagctcct
ttaaattttgatagattatttctgaaaattcaggccacatgtcctcctcgatctcaccac
aattatctttcctcagaagagttgtcgcaaaagtttgaagaggaattagtcagacatgat
aaaagtcgggtttgcactgacgcctttgtgaaatctcttcgagaatttgtttccttgctc
ggagtaaagtctgcaagcacgcctcaggttttatataaagcatctggtgtgactgataag
caactcgaggtatttgtaaaaatttgtgtatctcgctatcgggaaaaaaaaattgaggct
gggactgcaattgggacaataggagctcagagtattggagaacctgggacacaaatgact
ctgaaaacttttcactttgctggagtggcgagcatgaatatcacacaaggagtcccccga
atcaatgaaattatcaatgcttctaaaaatataagcacacctgtcatctctgcagaactt
gagaaccccctggaattgactagtgcacgatgggtgaaaggacgcattgaaaaaactact
ttaggacaggttgctgagagcatcgaggtgctaatgacttcaacatcagcgtcagtgaga
ataattcttgacaataaaataatcgaggaggcatgtttgtctataagcccctggtcggta
aaaaattccatcctaaagacccccagaatcaaactgaacgataatgatattagggtttta
gatacgggattggatattactcctgtggtggataaaagtaggactcatttcaatctccac
aatctgaagaatgtgctgccaaatatcatagtgaatgggatcaaaacagttgagcgagtt
gttgtcgcagaggatatggataaaaataaacagatagatgggaagacaaggtggaaactg
tttgtggagggcacaaacctcctggctgttatggggacaccgggaatcaatgggagaact
actacaagtaataatgttgtcgaagtgagcaaaacacttggaatcgaggctgcaaggaca
acaattattgatgaaatagggacagttatgggaaaccatggtatgagtatagacatccgt
cacatgatgcttttggctgatgtcatgacttacaggggggaggttctcgggatacaaaga
actgggattcagaagatggacaaaagtgtgctgatgcaggcatcttttgagaggactgga
gatcatttatttagtgcagctattagcggaaaggttgataacatagagggagttacagaa
tgtgtgattatgggcataccaatgaagctcggaaccggaatactcaaagttctccaaagg
accgatgatctgcccaagttgaaatatggagctgatccaatcatctcttga
DBGET
integrated database retrieval system
