KEGG   Arabidopsis lyrata (lyrate rockcress): 9319174
Entry
9319174           CDS       T01578                                 
Name
(RefSeq) DNA-directed RNA polymerase D subunit 2b
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    9319174
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aly03021]
    9319174
Enzymes [BR:aly01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     9319174
Transcription machinery [BR:aly03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     9319174
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5 CFAP77 DUF2002
Other DBs
NCBI-GeneID: 9319174
NCBI-ProteinID: XP_002883108
UniProt: D7L7Z5
LinkDB
Position
Unknown
AA seq 1169 aa
MDINEMDIDEIEIAGQMNLSELGETFLQSFCKKAATSFFEEFGLISHQLNSYNFFIEHGL
RNVFESFGEMLVEPSFDVIKKKDGDWRYATVKFGEVTFEKPTFFSDDKELEFLPWHARLQ
NMTYSARIKVNVQVEVFKKTVVKSDKFKTGQDEYVEKEILDVKKQDILIGSIPVMVKSVL
CKTSEKGKENCKKGDCAFDQGGYFVIKGAEKVFIAQEQMCTKRLWISNSPWTVSFRSETK
RNRFIVRLSENEKADDYKRREKVLTVYFLSTEIPVWLLFFALGVSSDKEAMDLIAFDGVD
ASITNSLIASIHEADAVCEAFRCGNNALTYVEHQIKSTKFPPAESVDDCLRLYLFPGLQG
LKKKARFLGYMVKCLLSAYAGKRKCENRDSFRNKRIELAGELLEREIRVHLAHARRKMTR
AMQKQLSGEGELKPIEHYLDASVITNGLNRAFSTGAWSHPFRKMERVSGVVANLGRANPL
QSLIDLRRTRQQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQV
LESVVEMLYACGMEELMDDTSTPLCGKHKVLLNGDWVGLCADSESFVAELKSRRRQSELP
REMEIKRDKDDNEVRIFTDAGRLLRPLLVVENLHKLKQDKPTQYPFKHLLDQGILELIGI
EEEEDCNTAWGIKQLLKEPKNYTHCELDLSFLLGVSCAIVPFANHDHGKRVLYQSQKHCQ
QAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTVASECLKKEVLFNGQNAIVAVNVHLGYNQ
EDSIVMNKASLERGMFRSEQIRSYKAEVDTKDSEKRKKMDELVKFGKTYSKIGKVDSLED
DGFPFIGANMSTGDIVIGRCTDSGADHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQ
VRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA
LSKGIASPIQKKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSG
EMMRSLIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADKKRFGGIKFGEMERDCL
IAHGASANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCASSDHVV
RVYVPYGAKLLCQELFSMGITLNFDTKLC
NT seq 3510 nt   +upstreamnt  +downstreamnt
atggacattaatgagatggatattgacgagatcgagattgctgggcagatgaatctttct
gagctaggggaaacttttctccaaagtttctgcaaaaaagctgctacatccttctttgaa
gagtttggactcataagtcatcagctcaactcctacaacttcttcatcgaacacgggctt
cggaatgtgttcgagtcctttggtgagatgcttgtggaaccgtcttttgatgtaataaag
aagaaggatggcgattggagatacgcaacagtgaaattcggagaagtcacctttgagaag
cccacattcttttcggatgacaaggagcttgagtttctcccatggcatgccaggcttcag
aacatgacatactcagcaaggatcaaagtgaatgtccaagttgaggtgttcaaaaaaact
gttgttaaaagtgacaaattcaagacgggacaagatgaatatgtcgagaaggagatactg
gatgtcaaaaagcaggacattctaattggtagcattcctgtcatggtgaaatctgtcctt
tgcaaaacaagcgagaaaggaaaagaaaactgcaaaaagggggattgtgcctttgatcag
ggtggttattttgtgataaagggggctgagaaggtgtttatagctcaagaacagatgtgc
acaaagagactgtggatttctaattcaccatggactgtctccttcaggtccgaaactaaa
agaaataggttcattgtgcgcctctcggagaatgagaaagcagatgactataagagaagg
gagaaagtactgacagtgtacttcttgtcgactgagattccagtctggctcttgttcttt
gcgctgggtgtttcgtcagacaaagaagccatggatctaattgcttttgatggtgttgat
gcaagcattaccaacagtctcatagcttctatccatgaagctgatgcagtttgtgaagct
tttcgctgtgggaacaatgccctaacatatgttgaacatcagatcaaaagcaccaaattc
cctcctgctgaaagtgtggatgattgcctccgtctgtatttgtttccaggccttcaaggt
ttgaagaagaaagcccgattcctgggctatatggtgaagtgccttctgagcgcgtatgcg
ggaaaacgaaaatgtgaaaaccgggacagtttccggaataagcgaattgagctcgctgga
gaactgttggaaagggaaataagggtgcatctggcacatgctaggagaaagatgacaagg
gccatgcagaaacaactctcaggcgagggagaattgaagcctattgagcattatttggat
gcttccgttatcacaaatgggcttaatcgagccttctccactggagcatggtctcatcct
ttcaggaagatggaaagggtttcaggtgttgttgctaatttgggtcgtgcaaatccattg
cagagtctgattgatctgaggagaacgcgacagcaagtcctatataccggcaaggttgga
gatgctagatatccgcatccctctcactggggcagagtatgctttttgtcaactccagat
ggtgaaaattgtggtctagtgaagaacatgtctcttcttggacttgttagcactcaagta
ttggagtctgtggtggaaatgctctatgcttgtggaatggaagagctgatggatgatacc
agcacaccattgtgtggcaaacacaaagttcttctcaatggagactgggttggattatgt
gcagattctgaatcctttgtcgcggagttaaaaagcaggcggcgccaaagtgaattacct
cgtgagatggaaatcaagcgagataaagatgataatgaggtgagaattttcactgacgct
ggtagactactccgacctctcttggtagtggaaaatctccacaagttgaagcaagacaaa
cctacacagtatccttttaagcatcttcttgaccaagggattctcgagctgatcgggatc
gaggaagaagaagactgtaatacagcatggggaatcaaacagcttctgaaggaaccaaag
aattacacgcattgcgaattggacctgtcattcctgttgggtgtgagctgtgcaattgtc
ccatttgcaaatcacgatcatgggaaaagagttctctaccagtcccagaagcattgccaa
caagccattggattctcatcaacgaaccctaacatccgctgcgatactctgtcccagcag
ctgttctatccccagaagccactgttcaagacagtggcgtcggagtgtctaaaaaaagaa
gtgctgtttaatggccagaacgcaattgttgctgtgaatgttcatctcgggtacaaccaa
gaggattccattgtgatgaacaaggcttcattggaacgtggtatgttccgttcagagcag
attagaagctacaaagcagaggttgatactaaagactcggagaagaggaagaagatggat
gagcttgttaagtttggaaagacatacagcaaaatcggcaaagtagacagccttgaagat
gacgggtttcctttcattggtgctaacatgagtactggagatattgtcattggcagatgc
accgattctggggctgatcacagtataaagctcaagcacactgagagaggaattgtgcaa
aaagtggtattatcatctaatgatgaagggaagaattttgctgcggtttctctgagacag
gttcgttctccatgccttggagataagttttccagtatgcatggccagaagggtgtttta
ggctatctagaggaacagcagaactttcctttcacgatccaaggcatagttcctgatatt
gttataaacccgcacgctttcccttctaggcaaacaccaggtcaactcttggaggctgct
ctctccaaaggaattgctagtcctatacaaaagaaggagggtagctctgctgcatacacc
aaattgacacgtcatgccactcctttctccactccgggtgtcactgaaatcaccgagcag
cttcacagggccggcttttcaagatggggaaacgaaagggtctacaatggtagatcgggt
gagatgatgcgttctctgatattcatgggcccaactttctaccagcgacttgtccacatg
tcagaggacaaagtcaagttcaggaacaccggaccagtccacccgctcacacgtcagcca
gtcgcagacaagaagaggtttggcggaataaaatttggagaaatggagcgagactgtcta
atagctcacggtgcatcagctaatctgcacgagcgtctcttcactctaagtgactcttct
cagatgcacatctgcagaaaatgtaagacctatgcgaatgtgatcgagaggactccaagc
agtggaagaaagatcagagggccatattgcagagtctgcgcgtcctcagaccatgtggtt
agggtctatgtcccgtatggagctaagcttctgtgtcaggagctgttcagcatgggcatc
actctcaacttcgacaccaagctctgctga

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