Amycolatopsis mediterranei U32: AMED_2324
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Entry
AMED_2324 CDS
T01269
Name
(GenBank) geranylgeranyl pyrophosphate synthase
KO
K13787
geranylgeranyl diphosphate synthase, type I [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
amd
Amycolatopsis mediterranei U32
Pathway
amd00900
Terpenoid backbone biosynthesis
amd01100
Metabolic pathways
amd01110
Biosynthesis of secondary metabolites
Module
amd_M00364
C10-C20 isoprenoid biosynthesis, bacteria
Brite
KEGG Orthology (KO) [BR:
amd00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
AMED_2324
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
amd01006
]
AMED_2324
Enzymes [BR:
amd01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
AMED_2324
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
AMED_2324
2.5.1.29 geranylgeranyl diphosphate synthase
AMED_2324
Prenyltransferases [BR:
amd01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
AMED_2324
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
PPL5
Motif
Other DBs
NCBI-ProteinID:
ADJ44121
UniProt:
A0A0H3D3K8
LinkDB
All DBs
Position
complement(2479478..2480569)
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AA seq
363 aa
AA seq
DB search
MNAPAADTDLPAHVERALAGFLDRAGTAILGTEPTVAAGIDALRGFVLGGGKRLRPTFAW
WGWRGAGGDPAGPDAEGVLQAVASLELIQACALIHDDLIDSSDSRRGNPTVHIAGAKLHA
DRGWLGSPATFGLATAVLVGDLALAWADDMFADADLPAETLAAARPAWRAMRTEVLAGQY
LDVRTQATGDASVEAALKIDRLKTAAYTVQRPLHLGAALGGAAPELIATLLEFGGEVGVA
FQLRDDLLGVFGDPSVTGKPAGDDLREGKRTLLAALGLQLAAEKGEQAAATVIADAIGDA
DLSDEGVETVRMALQQVGAVEAVERRIDELTTAAMAALDRAHLAEPAPAALTGLVVKATQ
RTY
NT seq
1092 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcgcccgccgccgacaccgacctgcccgcccacgtcgagcgcgcgctggccggg
ttcctcgatcgggcgggcaccgcgatcctcggcaccgagcccaccgtggccgccgggatc
gacgcgctgcgcgggttcgtgctgggcggtggcaagcgcttgcgcccgacgttcgcgtgg
tggggctggcgcggcgcgggcggcgacccggccggcccggacgccgagggcgtgctgcag
gcggtggccagcctcgagctgatccaggcgtgcgcgctgatccacgacgacctcatcgac
tcctccgactcccgccgcggcaacccgaccgtgcacatcgcgggcgcgaagctgcacgcc
gaccgcggctggctcggctcccccgccacgttcggcctggccaccgcggtgctggtcggc
gacctggcgctggcctgggcggacgacatgttcgccgacgcggacctgcccgccgagacc
ctggccgcggcccgcccggcttggcgcgcgatgcgcaccgaggtgctcgccgggcagtac
ctcgacgtccgcacgcaggccaccggggacgcctccgtcgaggccgcgctcaagatcgac
cggctcaagaccgccgcctacaccgtgcagcggccgctgcacctgggcgccgcgctcggc
ggggccgccccggagctgatcgccacgctgctggagttcggcggcgaggtcggcgtggcg
ttccagctgcgcgacgacctgctgggtgtcttcggcgacccgtcggtcaccggcaagccc
gccggtgacgacctgcgcgagggcaagcgcaccctgctcgccgccctcggcctgcagctc
gcggcggaaaagggcgagcaggccgcggccacggtgatcgcggacgcgatcggcgacgcg
gacctgtccgacgagggtgtcgagaccgtccggatggcgttgcagcaggtcggcgcggtc
gaggcggtcgagcgccggatcgacgagctgacgacggcggcgatggccgccctcgaccgc
gcgcacctggccgagcccgcacccgcggcgctgaccgggctggtcgtcaaggccacccag
cggacgtactga
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