Astyanax mexicanus (Mexican tetra): 103032393
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Entry
103032393 CDS
T05042
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103032393 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amex03019
]
103032393 (clp1)
Enzymes [BR:
amex01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
103032393 (clp1)
Messenger RNA biogenesis [BR:
amex03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
103032393 (clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
ATP_bind_1
AAA_16
MMR_HSR1
TniB
CbiA
AAA_22
AAA_18
Motif
Other DBs
NCBI-GeneID:
103032393
NCBI-ProteinID:
XP_007235365
Ensembl:
ENSAMXG00000014194
UniProt:
A0A8B9JZG4
A0A3B1IFE0
LinkDB
All DBs
Position
24:complement(6393195..6401305)
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AA seq
445 aa
AA seq
DB search
MSTEVSEKPGEEGGSTGGGTGIVGTRYDLEKETELRFEVESGERVQLELLTGMGEVFGSE
LNRNKRYTFGPGSKIAVFTWQGCSLSLSGKTEVAYISKDTPMLLYLNTHAALEQMRRQAE
RDNERGPRVMVVGPTDVGKSTVCRVLLNYAVRLGRRPTLVELDVGQSSVSVPGTMSALCI
ERPADVEEGFSVQAPLVFHFGSTTPGTNIKLYNKLTSCLAEVFSQRCEVNRRASVGGCII
NTCGWVKGSGYQALVHCASAFQVDVVLVLDQERLYNELKRDLPHFVRVVLLPKSGGVVER
SKDCRRETRDDKIREYFYGFRGTSFYPHAFDVRFSDVRIYKIGAPSIPDSCLPLGMSQDD
TQLKLVPVSPGRDLTHHVLSVSCVEDEVDGGSGQSRGILESPVCGFIVVTAVDTQAQVMT
VLSPAPRPLPRHTLLIMDIRFIDLK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgagtacagaggtctctgaaaaacctggtgaggaaggagggagtactggaggaggcact
gggattgtagggacacgttatgacttagagaaggagactgagctgcgctttgaagtggag
tctggagagcgggtccagctagaactcctgactggcatgggcgaagtgttcggctctgaa
ctgaacagaaataagaggtacacgttcggcccaggctctaagatcgctgtgttcacctgg
cagggctgcagcctctcactctcaggaaaaacagaggtggcatatatctctaaagacaca
ccaatgttgttgtatctgaacacacacgctgcactggagcaaatgagacgacaagctgag
agagacaatgagcggggtccaagggtcatggtggtgggcccaactgatgtagggaagtcc
acagtgtgtcgggtgttgttaaactacgctgtcaggctgggcaggaggcccacgctggtg
gagctggatgtcggccagagtagcgtgtctgttcctgggactatgtcagcgctgtgcatt
gagcgcccagcagatgtagaggaaggcttctctgtgcaagctcctcttgtttttcacttt
ggctccactacaccagggaccaacattaaactctataacaagctgacatcatgcctggcg
gaggtgttctcccagcgctgtgaagtaaaccgcagggcaagtgtaggaggctgcatcatc
aacacctgtggctgggtgaaaggttctggataccaggccttggtccactgtgcttcagcc
ttccaggtggacgtggtcctggtcttggatcaagagcgcctctacaacgagctcaaacgt
gacctcccacactttgtccgtgttgtcctcctgcccaagtctggtggtgttgtggagcgt
tccaaggattgtagacgggaaacgcgtgacgacaagatccgtgagtacttctacggcttc
cgtggaacatccttttacccacatgcttttgacgtgcgcttctcagatgtgcgcatttac
aagattggggcaccctccatcccggactcctgcctgccgttgggcatgtcacaagatgac
acgcaactaaagctggtacctgtgagccctggccgagacctgacccaccatgttctcagc
gtcagctgtgtagaggatgaggtcgatggtggctcaggacaaagtaggggtattctggag
agcccagtgtgtgggttcatcgtggttacagctgtggacactcaggctcaggtgatgacc
gtactttcacctgcaccacggccactgccccggcacactctgctcatcatggacattcgc
tttattgacctcaaatag
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