Astyanax mexicanus (Mexican tetra): 103042231
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Entry
103042231 CDS
T05042
Symbol
trpa1
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1 isoform X1
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
amex04040
]
103042231 (trpa1)
Ion channels [BR:
amex04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
103042231 (trpa1)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Ion_trans
Motif
Other DBs
NCBI-GeneID:
103042231
NCBI-ProteinID:
XP_022539728
Ensembl:
ENSAMXG00000000475
LinkDB
All DBs
Position
3:29617266..29667343
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AA seq
1106 aa
AA seq
DB search
MKESSSYCCVIEEDDMALAMANVFEWSCKGNISSLEFLSQKNPELLKSRDECGAGPIHHA
AASANLAVIRLIVTVVGPEELNTQDDHGRTPLHWAVEKNQEGSCSLLLELGADPNILSLS
LTAPLHLAISLEHNNLVQLLLLCDRTDVDLEGDLGNTPAMVACSNNNCQALQILFKYNAK
LCHQNKLGHFAIHTVAFAGAKEAMEVILQKGEEMGITTSGHINYLDKSKSSPLHLAVRGG
NTEVIKLCISKGAKVDQQQCDKSTALHFACTQGATEAVKIMLQPYERMEEIINIRDGANQ
TPLHRATLFDHVELAEYLVSKGADIDCIDCKGLSPLLLATTCSAWKTVSFLLLKGADFRV
KDKAGRNFLHLVIFQPKGLKNLPENLLQSKAVRELMSDEDYEGCTPLHYACKLGIHDSVK
NMLSQKICLGRKSKQKKSGLHFAAEYGRLNTCIRLLETISDSRLLNEGEENGLTPLHLAS
RGGHTKVVELLLRRGALFQSDYKGWSCLHHAAAEGYTQTMVILLAANVKLLDYTNEEGNT
ALHLAARAGHVAAVKLLLNRGALFMLNKNGASFLHEAVRNGKKEVANAAIENERSSEALS
LFKKGPGFRCVVLDLIEFLPESTKHLLDLCMVESEHDPNNINYHITYNFKWLQAPILLKK
YAKTDKSMNFQPLAALNAMVQYNRLELLTHPVCQKYLEMKWKAYGSKVHLLNLAVYLLGL
LPLTYLIINLKPTQNTSVNGTTVTMASVSFRTQSYMISVCIVMVLVMNVYAICKELVQLA
QQRLIYFMDSTNVSDWASAISSLVFVIPLFFSVDNKWHWEAGALAILFAWINFLLYFQRF
ERFGIYVVMFGEIIKTLISTIVLFVFLLLAFGLSFYALMLHRVEFNSISLSLAQTFVMTV
GELNYQNTLLEAYEQGQLAFPEISYFIFVLFVLLMPILLMNLMIGLAVGDIAEVQRNATL
KRIAMQINLHTNLEEKLPYWYMKRVDKPSITIYPNKKCEKVLGMIQQFWNFGEETEVRVR
LNTNARKSCPLEREIMKQKYRLKEISSVLEKQHNLLKLIIQKMEITSEADEHDGPQDFRA
ITSALPSSISRGSRWVPLIRALGVKK
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgaaggagagcagctcgtactgttgtgtgatagaagaggatgacatggctctcgctatg
gccaatgtgtttgagtggtcttgtaaaggaaacatttcatcgctggagtttctcagccag
aagaatccagaactgctgaagtccagagacgagtgcggcgcgggcccgatccatcacgcc
gcggccagcgctaatctagcggtcatccggctgatagtaaccgttgttggccccgaggag
ttgaacactcaggatgatcatggccggactccactgcactgggctgtagagaagaatcag
gaggggagctgctcgctgctgctggagctgggggctgatcctaacatcctcagcttatca
ttaactgccccgttgcacctggctatcagtcttgaacacaacaacctggtacagctgctg
ctgttgtgcgaccggacagatgtggatttggagggtgatctggggaacacaccggcaatg
gtggcgtgttccaacaataactgccaggctctacaaattctttttaaatacaacgcaaag
ttgtgccatcagaacaagctgggccactttgccatccacactgtggcgtttgctggtgcc
aaagaggccatggaggtgattctgcagaaaggtgaggagatgggcatcaccacctctgga
catataaactatctggataagtctaaaagctcaccacttcacctggccgtgcgaggaggg
aacactgaagtcattaagctctgcatcagtaaaggagccaaagtcgatcagcagcagtgt
gacaaatccacggctctgcacttcgcctgcactcagggagccactgaagcggtcaaaatc
atgctccagccctacgaacgaatggaggaaataatcaacatcagagatggtgccaatcag
acgcctctgcacagggccacgttatttgatcatgtggagctggctgaatatctcgtttca
aagggagcagatattgattgcattgactgtaagggtctgtcccctctgctgctggcgaca
acttgcagtgcctggaaaactgtttcatttctgctgctgaaaggtgcagatttcagagtc
aaagacaaagcgggacgcaacttcctccatctcgtcatcttccagccgaaaggcctgaaa
aatctccctgaaaatcttttacagagtaaagcagtgagggagctgatgagtgatgaagat
tatgaaggctgcaccccgctgcattacgcctgcaagcttggcatccacgactcagtcaaa
aacatgcttagtcaaaaaatctgcctgggccgcaaatcaaagcaaaagaaatccggactt
cactttgctgcagaatatgggcgtctgaacacctgcatcaggctgctggagaccatcagt
gactctaggctgctaaacgagggtgaggagaatggactgacccctctccatctggcctcc
agagggggacacactaaagtggtggaactgctgctcaggagaggggcactgtttcaaagt
gattataaaggctggtcgtgtttacatcatgctgcagctgaaggatacactcaaaccatg
gtaatcctcctggctgccaacgtcaaactgctggactacacaaacgaggaggggaacacg
gctctgcacttagcagcgagagcaggccacgttgcagcagtgaagctgctactgaacaga
ggagctctattcatgctcaacaaaaacggcgcctccttcctgcacgaggctgtacgcaac
ggcaagaaagaagtagctaatgctgctattgagaacgagaggtccagtgaggctttgagt
ctgtttaaaaaaggcccaggctttcgctgtgttgttctggacttaattgagttccttcca
gaatctaccaagcacctcctggacctgtgtatggtagaatcagagcatgacccaaacaac
atcaactaccatatcacttacaatttcaagtggcttcaggctccaattctgctcaagaag
tatgctaagacggacaaatcaatgaattttcagcctctggcagcactgaatgcgatggtg
cagtacaaccggctcgagctcctcactcatccagtgtgtcagaaatacttagagatgaaa
tggaaagcatacgggagtaaagttcatttactcaatctggccgtgtatctgctgggcctg
ctgcccctcacatacctcatcatcaacctcaaacccacccagaacacctccgtcaacggc
accaccgtcaccatggcttctgtttccttcagaacgcaaagctacatgatctctgtctgc
attgtcatggtccttgtcatgaacgtgtacgccatttgtaaagagctggtgcagttggct
cagcagcgtctgatttacttcatggactccaccaatgtgtcggactgggcctcggcaatc
tcctctctggttttcgttatcccgttgttcttcagtgtggataataaatggcactgggag
gctggagctttggccattctgtttgcctggatcaacttcctactctacttccagaggttt
gagcgttttggtatttacgtggtgatgtttggggaaattataaaaacgctgatcagcacc
atcgtcctgttcgtcttcctcctgctggcattcggtttgtccttctacgctctgatgctt
catcgagtggagtttaactccatcagcctgtctctggctcagacgtttgtgatgacagtg
ggagagctgaactatcagaacactctgctggaggcgtatgaacagggtcagctggccttt
cctgaaatcagctacttcatctttgtgctctttgttctcctcatgcccatcctcctcatg
aacctgatgatcggtttggctgtgggagatatagcagaggtgcagaggaacgcaacactg
aagaggattgccatgcagattaatcttcataccaacttggaggaaaagctgccgtactgg
tacatgaagagagtggacaagcccagcatcaccatctacccaaacaagaaatgcgaaaag
gttttggggatgattcagcagttctggaatttcggagaagaaactgaagttcgggttcgc
ctgaacacaaacgcacgcaagagctgcccactggagagagagataatgaagcagaaatac
aggctgaaggagatttcctctgtgctggagaagcagcacaacctgctgaagctcatcatc
cagaagatggagataacatctgaggctgatgaacatgatggccctcaggacttcagggcc
atcacctctgcattgccctcatccatcagccgaggctctcgatgggtcccgctgatccgg
gcgctcggggtgaagaagtga
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