Alligator mississippiensis (American alligator): 102570029
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Entry
102570029 CDS
T03087
Symbol
VCAM1
Name
(RefSeq) vascular cell adhesion molecule 1
KO
K06527
vascular cell adhesion molecule 1
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
102570029 (VCAM1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
amj04090
]
102570029 (VCAM1)
04091 Lectins [BR:
amj04091
]
102570029 (VCAM1)
CD molecules [BR:
amj04090
]
Proteins
102570029 (VCAM1)
Lectins [BR:
amj04091
]
I-type lectins (Siglecs)
102570029 (VCAM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
V-set
C2-set
Ig_5
Ig_4
Ig_6
ICAM_N
DUF2808
Receptor_2B4
C1-set
MARF1_LOTUS
ICAM1_3_5_D2
Pectate_lyase_3
Motif
Other DBs
NCBI-GeneID:
102570029
NCBI-ProteinID:
XP_006268699
UniProt:
A0A151M531
LinkDB
All DBs
Position
Un
AA seq
538 aa
AA seq
DB search
MARTVPSVTVLFLMFMTAKAFELEIIPGVKVAAQIGGKLLLICRTSGCESPVFSWRTQLD
SPLGGTVSNEGSTSNLTMNPVTFENDHAYLCSAHCGSKKKEKGIKVELYSFPSDPVIMIS
KPLYAGEKSSIICKIPNVYPADRLVIQLQKEGELPSRKEFYDDPSDKTTETKWMWYHFTP
TIEDTGKEITCMAELPIAEMEFEPKKRQTSEKLIVTFGPQNTAITVSPNATVEVGSTVVL
YCMSESNPPAKILWGKRQDDKSVRHIMENHTLTIPHAQLSDSGLYICEAINAAVNKTQRT
TVSISIQVPPKDTMLLAFPSDAVKEGDSVTISCTSTGNPAVHIVLKKKMGDVDQVLDSEG
GNYTIDRAQMEHAGVYKCESRNELGQQFQNITLNVKVPPQNTTVLIYPSESVNEGVNVTI
TCTTYSNPPPEIILKKVYPYNKTILSSKNGTFTLYNVTRNDTGKYLVNVSNEAGTDIEVI
EIAVIGRTVEPEYVKPVIIVLSCLSVLTIPAVAVLVYQSRKGKINGSYHVANAPGPKV
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaacagttccatcagtgacggtcctttttctgatgttcatgactgctaaagct
tttgaactggagatcatacctggagtcaaagttgctgctcagattggaggtaaattgctg
ctgatctgccgtacttctggctgtgagtccccagttttctcttggagaactcaactagac
agccccctaggagggacggtgagcaatgagggaagcacctccaacttgaccatgaatcct
gttacctttgagaatgaccatgcttacctctgcagtgcccattgtggatctaagaaaaaa
gagaagggcatcaaggttgaactttactctttccccagtgatcctgtcattatgatcagc
aagccgctctatgctggggaaaagagcagtatcatttgtaaaattcctaacgtatatcct
gctgaccgcttagtgatacagctgcagaaagaaggagaacttccttccaggaaagaattt
tatgatgacccaagtgacaaaaccacagagacaaaatggatgtggtatcactttaccccc
accattgaagatactgggaaagagattacttgtatggctgaattaccaattgctgaaatg
gagtttgaacccaagaaaagacaaacatcagagaaactgattgtcacttttggcccacaa
aatactgccatcaccgtgtctccaaatgcaacagtggaggtagggagcactgtggttctc
tattgtatgagtgagagtaatccaccagcaaaaatactttggggaaaacggcaagatgat
aaaagtgttcggcacattatggaaaaccacacccttaccattccacatgcccagctaagt
gattcggggctgtacatctgtgaagctatcaatgcggcagtgaacaaaactcagagaaca
acagtctccatttctatacaagttccaccaaaagacacaatgcttttggcttttccttca
gatgctgtaaaagaaggtgacagtgttaccatctcttgcacatctacaggcaacccagct
gttcatattgtcttgaaaaagaaaatgggggatgtggaccaggtgcttgactctgaaggt
ggcaactataccatagacagggctcagatggaacatgcaggagtgtacaaatgtgaatcc
aggaatgaactaggacagcagtttcaaaacataacacttaatgtcaaagttcctcctcaa
aatactacagtgttaatatatccatcagaatctgtcaatgaaggggtaaatgtcactatt
acatgtacaacctatagtaacccaccaccagagataatcctgaaaaaggtctatccatac
aataaaaccatcctgtcatcaaagaatggaacctttacactatataatgtcaccagaaat
gatacaggaaaatacttggttaatgtttccaatgaggctggaactgacattgaagtgatt
gagatagctgttataggaagaacagttgaaccagaatatgtgaagcctgtgattattgtg
ctctcttgtttatcagtgttgacaatacctgcggttgcagtactggtctaccagtcaaga
aaaggaaagataaatggatcctaccatgttgcaaatgcaccaggaccaaaagtgtaa
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