Alligator mississippiensis (American alligator): 102573895
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Entry
102573895 CDS
T03087
Symbol
MSH6
Name
(RefSeq) mutS homolog 6
KO
K08737
DNA mismatch repair protein MSH6
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
102573895 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amj03400
]
102573895 (MSH6)
DNA repair and recombination proteins [BR:
amj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
102573895 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
WPP
Motif
Other DBs
NCBI-GeneID:
102573895
NCBI-ProteinID:
XP_006269601
UniProt:
A0A151NXA3
LinkDB
All DBs
Position
Un
AA seq
1340 aa
AA seq
DB search
MSRQSTLLRFFPKAPAAAEPKAPAPAERNGHGAAPARSPGPAVQSEGAGKPTAVGPCAGP
LSVSCGYSPGDLVWAKMEGYPWWPCLVYNHPIEGTLTRGKGKSSRIHVQFFDDSPTRGWV
SIKYLRPYKGSADRETQKGGMFYSSKPEIKRAMILADDAMLKDASKRLELAVCNEPSDTE
DEEMEVSESASGNSEDYESEEEVKKNKQTTSQRRSAGKSKKRRVLDSDTDNEGSDVEFKP
DAKNEASSDEDSSGVDEGESGDSEPDTEMDVESPVKVAPKRKRLAINRPAKRRSLENDLP
EAPKRVVTMSSETKSKLTSFAAPESFESQPNAGSGGVGSSVEWEHEKFEWLREGKRRDGC
RRRQGDPSYDPCTLYVPEDHLNKCTPGMRKWWQLKSQNFDSVIFYKVGKFYELYHMDAVT
AVNELGLIFMKGIWAHSGFPEIAFGRFSDVLVQKGYKVVRVEQTETPEMMEARCKSLAHP
TKFDKVVRREICRVITKGTQTYSVLDGDPSENHNRYLLCIKEKVEDSSGHLRVYGVCFVD
TSVGKFYVGQFPDDRHCSRFRTLVSHYTPVQILFEKGNLSSDTYKILRGSLSSCMQEGLI
SGSQFWNASKTLKTLLEEGYFKDKEKSDDDCTLPPVIKSMTSESDSLGLTPGDNSELALS
ALGGCVFYLKKCLIDQELLSLANFEEYIPVDIDLTKATGSSSFFAKTSQRMVLDGVTLMN
LEILQNGTTGTMEGTLLERMDTCCTPFGKRLLKQWICAPLCNPYAINDRLDAVEDLLAVP
TKMSEVSEQLKKLPDLERLLSKIHSIGSPLKSESHPDSRAVFYEETKYSKKKIADFLSAL
EGFKAMNEIIDVMEETADDFKSKILKQVVTRKSKTPEGRFPDLHTELKRWDTAFDHNQAR
KTGVITPKSGFDPDYDKALQDIKDVEEDLREYLNKQRKLLGFKTMLYWGAGKNRYQIEIP
ESVVTRGLPEEYELKSTRKGYKRYWTKEIEKMLADMMNAEERRDTAVKDCMRRLFYNFDK
NNKDWQTAVDCFAVLDVLLCFANYSRDGEGPMCRPVILLPENNVPPFLELKGSCHPCITN
TFFGDDFIPNNIVIGCKDEDEESTSEAYCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYL
PAEACRLTPVDRVFTRLGASDRIMSGESTFFVELSETSSILQHATEHSLVLVDELGRGTA
TFDGTAIASAVVKELAENVKCRTLFSTHYHSLVEDHSHNNAVRLGHMACMVENDSEDPSQ
ETITFLYKFTKGACPKSYGFNAARLANIPEEIIQNGHRKAREFEMMTLSLRMFRYLCLMA
EDATGDKSTVQKLMRLINHL
NT seq
4023 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggcagagcaccctgctccgcttcttccccaaggccccggccgctgccgagccc
aaggcgccggccccggccgaaaggaacgggcatggggcggccccagcgcgcagccctggc
ccggcggtgcagagcgagggggcggggaagccgactgcggtaggaccctgcgccgggccg
ctcagcgtctcctgtgggtattcacctggtgatttagtttgggccaagatggaaggttat
ccctggtggccatgtctggtatacaaccacccaattgaaggaacactcaccagagggaaa
gggaaatcctctcgtatccatgttcagttttttgatgacagtcccacaagaggctgggtt
agcattaaatacttaaggccatataaaggttcagcagacagagaaacacagaagggaggc
atgttttacagttcaaagcctgaaattaaaagagcaatgatcttagcagacgatgctatg
cttaaagatgcaagtaagcggcttgagcttgctgtgtgcaatgaaccttcagacacggaa
gatgaggaaatggaggtgagtgaaagtgcatcaggcaacagtgaggattatgagagcgaa
gaggaagtgaaaaaaaataagcaaacaactagccagagaagaagtgctggaaaatccaag
aagagaagagtgttggactctgacactgataatgaaggttcagatgtggagtttaagcca
gatgctaaaaatgaagcaagcagcgatgaagacagcagtggagtggatgaaggtgaatct
ggagactctgagccagacacagagatggatgtagaaagtcccgttaaagttgcccctaaa
cgaaagagactagccataaacagaccagctaaaaggaggagcttggagaatgaccttccc
gaggcacccaaaagagtggtaaccatgtcttcagaaaccaagtccaagctgacatctttt
gcagcacctgaaagcttcgagtctcagccaaatgcgggcagcggaggagttggcagttct
gtggaatgggagcatgagaagtttgaatggctccgtgaaggaaaaaggagagatggatgc
aggaggcggcagggtgaccccagttatgacccgtgcaccctctatgtgccagaggaccac
ctgaacaaatgtacccctggaatgcgaaagtggtggcagctcaagagtcagaactttgac
tctgtgattttctacaaagttggcaagttctacgagttgtatcacatggatgctgtaact
gcagtgaatgagcttggactgatatttatgaaaggtatatgggcccattcagggttccca
gaaattgcgtttggcaggttctctgatgttctagttcagaaggggtacaaagtagtccgg
gttgagcagacagagacacctgaaatgatggaggcacgctgcaaatccctggctcaccca
acaaagtttgacaaggttgtacgaagagaaatatgtcgggtaattactaaagggacgcag
acttacagtgttctggatggtgatccatctgaaaaccataacagataccttctgtgtata
aaagagaaagttgaagactcttctggtcatctacgtgtatatggtgtctgttttgttgac
acttctgttggcaaattttatgttgggcagtttccagatgaccgccactgttcaaggttc
agaactttggtgtcacattatactcctgtgcagatcctgtttgagaagggaaacctctct
tcagacacgtacaaaatactgagaggctcactgtcttcttgcatgcaagaaggtttgatc
tcaggctcccaattctggaatgcctctaaaacactaaaaactctgcttgaggagggatac
ttcaaggataaggaaaagtctgatgatgactgtactctgcctcctgtgatcaaatccatg
acttcagaaagcgactctctgggacttactcctggtgacaacagtgaattggctctgtcg
gctcttggtggctgtgtcttctaccttaagaagtgccttattgatcaggagctcttatct
ctggcaaactttgaggaatacattcctgtggacattgatctgaccaaagctactggatca
agtagtttctttgcaaaaactagtcagaggatggtattagatggggtgactctaatgaac
ttggaaatcctccagaatggaactactggcaccatggaaggaacgttactggaaaggatg
gacacttgttgtacaccctttggaaagcgactcctgaaacagtggatctgtgcgccactc
tgtaatccttatgctatcaatgatcgtttagatgcggttgaagaccttctggcagtgcct
actaaaatgtccgaagttagtgaacaactaaagaaactcccagacctggaaaggctgctg
agtaaaattcatagtattggatctccactgaaaagtgagagtcatccggacagtcgggcc
gtcttttatgaggaaaccaagtacagcaaaaaaaaaattgctgactttctgtctgcactg
gaagggtttaaggcaatgaatgagatcatagacgtgatggaagaaaccgctgatgatttc
aaatccaaaatacttaaacaagtagtgacccgcaagtctaaaactccagagggccgcttt
ccagacctccacacagagcttaaaagatgggacactgcttttgaccataatcaggctcga
aaaactggggtgatcacaccaaagtctgggtttgaccctgattatgataaggccttgcag
gatataaaagacgtggaagaggatcttcgggaatatttgaataagcagcgcaagctcctt
ggattcaaaactatgctgtactggggggcaggcaagaatcgatatcaaatagaaattcca
gaaagtgtagtgacacgtggcttgcctgaagagtatgaattgaagtccaccagaaagggt
tacaaacgctactggaccaaggagatcgagaagatgctggctgacatgatgaacgctgag
gagcggagagatacggctgtgaaagattgcatgagacgactcttctacaactttgataaa
aacaacaaagactggcaaacagcagtggattgttttgctgtcctagatgtcctgctgtgc
tttgctaattatagtcgagatggtgaaggaccaatgtgccgacctgtgattctgctgcca
gagaacaatgttccacccttcttggagcttaaaggttcctgccatccatgcattacaaac
actttttttggggatgattttattcccaataatattgtgataggctgcaaggatgaagat
gaagagagcactagtgaagcctactgtgttctagtaactggcccaaatatgggtggcaaa
tctacactcatgagacaggctggcctcctggtaataatggctcagttgggatgttactta
cctgccgaagcttgcaggcttactcctgttgacagagtgtttacgcgactaggtgcctcg
gacagaattatgtcaggagaaagcaccttttttgttgagctgagcgagacttccagcata
ctccagcatgcaacagagcattcccttgtgcttgtggatgaactaggtagaggcacagct
acttttgatggaacagcaatagcaagtgcagtcgttaaagaacttgcagaaaatgtaaag
tgccgcacattgttttcaacacactaccattcattagtagaagaccattcacacaacaat
gctgtgcggctaggacacatggcatgcatggttgaaaatgacagtgaagatccaagccag
gaaactattacatttctgtataaattcactaagggagcttgtcctaaaagctatggtttt
aatgcagcaaggcttgctaacattccagaggaaattattcagaatggtcacagaaaagca
agagagtttgagatgatgacgctttcacttagaatgtttaggtacctttgtttgatggca
gaggatgcaacaggagataaaagcactgttcagaaactgatgagactgatcaatcatctt
taa
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