Ailuropoda melanoleuca (giant panda): 100471984
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Entry
100471984 CDS
T01329
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml01524
Platinum drug resistance
aml03430
Mismatch repair
aml05200
Pathways in cancer
aml05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
100471984 (MSH6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100471984 (MSH6)
09162 Cancer: specific types
05210 Colorectal cancer
100471984 (MSH6)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
100471984 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aml03400
]
100471984 (MSH6)
DNA repair and recombination proteins [BR:
aml03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
100471984 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
HORMA
MUM1-like_PWWP
WPP
UPF0524
Motif
Other DBs
NCBI-GeneID:
100471984
NCBI-ProteinID:
XP_002912469
Ensembl:
ENSAMEG00000006324
UniProt:
D2GUB6
LinkDB
All DBs
Position
4:73636383..73659537
Genome browser
AA seq
1362 aa
AA seq
DB search
MSRQSTLYSFFPKSPALTNANKASVRAPGGGGGAAAATGASRSPGGDAAWSEAEPGPGPL
AGSASPPESRNINGGLRRSAAPAVPASSCDFSPGDLVWAKMEGYPWWPCLVYNHPFDGTF
IREKGKSVRVHVQFFDDSPTRGWVSRRLLKPYTGSQSKEVQKGGHFYSSKPEILRAMQRA
DEALKKDKIERLKLAVCDEPSEPEEEEEMEVGATYSSDKSEEDNEIESEEEVQPKVQGSR
RSSRQIKKRRVISDSESDIGGSDVEFKPDAKEEGSSDELSSGVGDSDSEGLESPVKVASK
RKKMVTGNGSLKRKSSRKEMPLATKRSTGISSETKSALNAFSAPQNSESQAHISGGCDDS
SRPTVWYHETLEWLKEEKRRDLHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQ
NFDLVIFYKVGKFYELYHMDALIGVNKLGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYK
VARVEQTETPEMMEARCRKMAHISKYDRVVRREICRVITKGTQTYSVLEGDPSENYSKYL
LSLKEKEEDSSGHTRVYGVCFVDTSLGKFLIGQFSDDRHCSRFRTLVAHYPPVQVLFEKG
NLSTETKMILKGSLSSSLQEGLIPGSQFWDAAKTLRTLLEEGYFKEKLNEDSGVMLPQVL
KGMTSESDSLGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDMVSA
AGPGAFFAKANQRMVLDAVTLSNLEIFMNGTNGSTEGTLLEKIDTCHTPFGKRLLKQWLC
APLCSPYAINDRLDAIEDLMVVPDKISDVVDLLKKLPDLERLLSKIHNVGSPLKSQNHPD
SRAIMYEETTYSKKKIIDFLSALEGFKVICKIIEIMEEVVDNFKSKILKQVVTLQTKTPE
GRFPDLTLELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIKENEQSLLEYLEKQR
SRIGCRTIVYWGIGRNRYQLEIPENFITRNLPEEYELKSTKKGCKRYWTKTIEKKLANLI
NAEERRDTSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVI
LLPEEGTPPFLDLRGSRHPCITKTFFGDDFIPNDILIGCEEEEEENGKAYCVLVTGPNMG
GKSTLMRQAGLLAVMAQTGCYIPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETA
SILTHATAHSLVLVDELGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQ
NVAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHR
KAREFEKMTQSLRLFREVCLASERSTLDAEAVPKLLTLIKEL
NT seq
4089 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacagagcacgctgtacagcttcttccccaagtctccagcgctgactaatgct
aataaggcctcggtcagggcgccaggtggaggcggcggcgccgctgctgccaccggggcc
tcccgttctcccggcggggatgcggcctggagcgaggccgagcctgggcctgggcccttg
gcaggctccgcgtcgccgccggagtcgaggaacatcaacggagggctgcggagatctgcc
gcccctgcggtccccgccagttcttgtgacttctcaccaggtgatttggtttgggccaag
atggagggttacccctggtggccttgcctggtttacaaccacccttttgatggaacattc
atccgtgagaaagggaagtctgttcgagttcatgtacagttttttgatgacagcccaaca
aggggctgggttagcagaaggctattaaagccatatacaggttcacaatcgaaggaagtg
caaaaaggaggtcatttttacagttcaaagcctgaaatactcagagcaatgcaacgtgca
gatgaagccttgaaaaaagacaagattgagaggctaaaattggcggtgtgtgatgagccc
tcagaaccagaggaagaagaagagatggaggtaggtgcaacttactcatcagataagagt
gaagaagataatgaaattgaaagtgaagaggaagtacagcctaaggtccaaggatctagg
cgaagtagccgccaaataaaaaaacgaagggtcatatcagactctgagagtgacattggt
ggctctgatgtggaattcaagccagatgctaaggaggaaggaagtagtgatgaactaagc
agtggggtgggggatagtgacagtgaaggcctggagagtcctgtcaaagttgcttcaaag
cggaagaaaatggtgactggaaatggctctctcaaaaggaaaagttcaaggaaggaaatg
cccttggccaccaaacgatcaactggcatttcatcagaaaccaagagtgctttgaatgct
ttctctgcccctcaaaattctgaatctcaagcccacattagtggaggatgcgatgatagt
agtcgccccactgtctggtatcatgaaactttagagtggctcaaggaggaaaagagaaga
gatctacacaggaggcgacctgatcaccctgattttgatgcatccacactctatgttcct
gaggatttccttaactcctgtactcctggcatgaggaagtggtggcagattaagtctcag
aactttgatcttgttatattttataaggtggggaagttttatgagctgtaccacatggat
gctcttattggagtcaacaaactaggtctggtattcatgaaaggcaactgggctcattct
ggtttccctgaaattgcatttggccgatattccgattctctggttcagaaaggttataaa
gtagcacgagtggaacagactgagacccctgaaatgatggaggcacgatgccggaagatg
gcacatatatctaagtatgacagagtggtgaggagggagatctgtagagttattaccaag
ggtacacagacctacagtgttttggaaggtgacccctctgagaactacagtaagtatctc
cttagcctcaaagaaaaagaggaggattcttctggccacactcgggtgtatggagtatgc
tttgttgatacctcactgggaaagtttctcataggtcagttttcagatgatcgccattgt
tccagatttaggactctggtggcacactatcctccagtacaagtcttatttgagaaagga
aatctctcaacagaaacgaagatgattctgaagggttcattatcctcctctcttcaggaa
ggtctgataccaggctcccagttttgggatgcagccaaaactttgagaactctccttgaa
gaaggatattttaaggaaaagttaaatgaggacagtggggtgatgttaccccaggtgctt
aaaggtatgacctcagagtctgattctcttgggttgacaccaggagagaagagtgaattg
gccctgtctgctctaggtggttgtgtcttctacctcaaaaaatgtcttattgatcaagag
cttttatcaatggctaattttgaagaatacattcccttggattctgacatggtcagtgct
gcaggacctggtgctttttttgctaaagccaatcaacgaatggtgctagatgctgtgaca
ttaagcaacttggagattttcatgaatggaacaaatggttctactgaagggaccctgcta
gaaaagattgatacttgccatactccctttggtaaacggcttctaaagcagtggctttgt
gccccactctgtagcccttatgctatcaatgatcgtctagatgctatagaagatctaatg
gttgtgcctgacaaaatctctgatgtggtagaccttctaaagaagcttccagaccttgag
aggctgctgagtaaaattcataatgttgggtctcccctcaagagccaaaaccacccagat
agcagggctatcatgtatgaagaaactacatacagcaaaaaaaagattattgattttctt
tctgctctagaaggattcaaagtaatatgtaaaattatagagattatggaagaagtcgtt
gacaactttaagtctaaaatccttaagcaggttgttactctacagacaaaaactcctgag
ggccgttttccagatttgactctagagctgaaccgatgggatacagcctttgatcatgaa
aaggctcgaaagactggactaattactcccaaagcaggatttgactctgattatgaccaa
gctcttgctgacataaaagaaaatgaacagagcctcctggaatacttggagaaacagcgt
agtcgaataggctgtaggaccattgtctactgggggatcggtaggaaccgttatcagttg
gaaattccagagaattttatcactcgtaatttgcccgaagaatatgagttgaaatctacc
aagaagggctgtaagcggtactggaccaaaactattgagaagaagttggctaatctgata
aatgctgaagaacggagagacacatcattgaaggactgcatgcggcgactgttctataac
tttgataaaaattacaaggactggcagtctgctgttgagtgcatcgcagtattggatgtg
ttattgtgcctggctaactacagtcgagggggtgatggccctatgtgtcgtccagtaatt
ctgttgccagaagaaggcactcctcccttcttagaccttagaggatcacgtcatccctgc
attacgaagactttttttggagatgactttataccaaatgacattctgataggctgtgag
gaagaggaagaggaaaatggcaaagcttactgtgtgcttgttactggacctaacatgggg
ggcaagtctacgctcatgagacaggctggcctgttagctgtaatggctcagacaggttgt
tacatacctgctgaagtgtgtaggctcacaccaattgatagagtatttactagacttggt
gcctcagacagaataatgtcaggtgaaagtacattttttgtggagttgagtgaaactgcc
agtatacttacgcatgcaacagcacattctctggtgcttgtggatgaattaggaagaggt
actgcaacatttgatggaacagcaatagcaaatgcggttgttaaagaacttgctgagaac
ataaagtgtcgtacactgttttctacccactaccattcattagtagaagattattctcaa
aatgttgcagttcgcctgggccacatggcatgcatggtagaaaatgaatgtgaggatccc
agccaggagactattaccttcctctataaattcattaagggagcttgtcctaaaagctat
ggctttaatgcagcaaggcttgccaatcttccagaggaggttattcaaaagggacataga
aaagcaagagaatttgaaaagatgactcaatcactgcgattatttcgggaagtttgcctg
gctagtgaaaggtcgactctagatgctgaagctgtccctaagttgctgactttgattaag
gaattatag
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