Arvicanthis niloticus (African grass rat): 117710516
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Entry
117710516 CDS
T08817
Symbol
Notch1
Name
(RefSeq) neurogenic locus notch homolog protein 1
KO
K02599
Notch 1
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu01522
Endocrine resistance
anu04330
Notch signaling pathway
anu04658
Th1 and Th2 cell differentiation
anu04919
Thyroid hormone signaling pathway
anu05020
Prion disease
anu05165
Human papillomavirus infection
anu05200
Pathways in cancer
anu05206
MicroRNAs in cancer
anu05224
Breast cancer
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
117710516 (Notch1)
09150 Organismal Systems
09151 Immune system
04658 Th1 and Th2 cell differentiation
117710516 (Notch1)
09152 Endocrine system
04919 Thyroid hormone signaling pathway
117710516 (Notch1)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
117710516 (Notch1)
05206 MicroRNAs in cancer
117710516 (Notch1)
09162 Cancer: specific types
05224 Breast cancer
117710516 (Notch1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
117710516 (Notch1)
09164 Neurodegenerative disease
05020 Prion disease
117710516 (Notch1)
09176 Drug resistance: antineoplastic
01522 Endocrine resistance
117710516 (Notch1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
hEGF
EGF_CA
EGF_2
Ank_2
Ank
NOD
Notch
NODP
Ank_4
Ank_5
Ank_3
EGF_3
JAG1-like_EGF2
Motif
Other DBs
NCBI-GeneID:
117710516
NCBI-ProteinID:
XP_034361303
EnsemblRapid:
ENSANLG00005011193
LinkDB
All DBs
Position
6:complement(107128676..107174630)
Genome browser
AA seq
2531 aa
AA seq
DB search
MPRLLAPLLCLTLLPALAARGLRCSQPSGTCLNGGRCEVANGTEACVCSRAFVGQRCQDP
NPCLSTPCKNAGTCHVVDHGGTVDYACSCPLGFSGPLCLTPLDNACLANPCRNGGTCDLL
TLTEYKCRCPPGWSGKSCQQADPCASNPCANGGQCLPFESSYICGCPLGFHGPTCRQDVN
ECSQNPGLCRHGGTCHNEIGSYRCACRATHTGPHCELPYVPCSPSPCQNGGTCRPTGDTT
HECACLPGFAGQNCEENVDDCPGNNCKNGGACVDGVNTYNCRCPPEWTGQYCTEDVDECQ
LMPNACQNGGTCHNTHGGYNCVCVNGWTGEDCSENIDDCASAACFQGATCHDRVASFYCE
CPHGRTGLLCHLNDACISNPCNEGSNCDTNPVNGKAICTCPSGYTGPACSQDVDECALGA
NPCEHAGKCLNTLGSFECQCLQGYTGPRCEIDVNECISNPCQNDATCLDQIGEFQCICMP
GYEGVYCEINTDECASSPCLHNGRCMDKINEFLCHCPKGFSGHLCQYDVDECASTPCKNG
AKCLDGPNTYTCVCTEGYTGTHCEVDIDECDPDPCHYGSCKDGVATFTCLCQPGYTGHHC
ETNINECHSQPCRHGGTCQDRDNSYLCLCLKGTTGPNCEINLDDCASNPCDSGTCLDKID
GYECACEPGYTGSMCNVNIDECAGSPCHNGGTCEDGIAGFTCRCPEGYHDPTCLSEVNEC
NSNPCIHGACRDGLNGYKCDCAPGWSGTNCDINNNECESNPCVNGGTCKDMTSGYVCTCR
EGFSGPNCQTNINECASNPCLNQGTCIDDVAGYKCNCPLPYTGATCDVVLAPCATSPCKN
SGVCKESEDYESFSCVCPTGWQGQTCEIDINECVKSPCRHGASCQNTNGSYRCLCQAGYT
GRNCESDIDDCRPNPCHNGGSCTDGINTAFCDCLPGFQGAFCEEDINECSSNPCRNGANC
TDCVDSYTCTCPVGFHGIHCENNTPDCTESSCFNGGTCVDGINSFTCLCPPGFTGSYCQY
DVNECDSRPCLHGGTCQDSYGTYKCTCPQGYTGLNCQNLVRWCDSAPCKNGGKCWQTNTQ
YHCECRSGWTGLNCDVLSVSCEVAAQKRGIDVTLLCQHGGLCVDEEDKHYCHCQAGYTGS
YCEEEVDECSPNPCQNGATCTDYLGGFSCKCVAGYHGSNCSEEINECLSQPCQNGGTCID
LTNTYKCSCPRGTQGVHCEINVDDCHPPLDPASRSPKCFNNGTCVDQVGGYTCTCPPGFV
GERCEGDVNECLSNPCDPRGTQNCVQRVNDFHCECRAGHTGRRCESVINGCRGKPCKNGG
VCAVASNTARGFICRCPAGFEGATCENDARTCGSLRCLNGGTCISGPRSPTCLCLGSFTG
PECQFPASSPCVGSNPCYNQGTCEPTSESPFYRCLCPAKFNGLLCHILDYSFTGGAGRDI
PPPQIEEACELPECQEDAGNKVCNLQCNNHACGWDGGDCSLNFNDPWKNCTQSLQCWKYF
SDGHCDSQCNSAGCLFDGFDCQLTEGQCNPLYDQYCKDHFSDGHCDQGCNSAECEWDGLD
CAEHVPERLAAGTLVLVVLLPPDQLRNNSFHFLRELSHVLHTNVVFKRDAQGQQMIFPYY
GHEEELRKHPIKRSTTGWATSSLLPGTSGGRQRRELDPMDIRGSIVYLEIDNRQCVQSSS
QCFQSATDVAAFLGALASLGSLNIPYKIEAVKSEPVEPPLPSQLHLMYVAAAAFVLLFFV
GCGVLLSRKRRRQHGQLWFPEGFKVSEASKKKRREPLGEDSVGLKPLKNASDGALMDDNQ
NEWGDEDLETKKFRFEEPVVLPDLDDQTDHRQWTQQHLDAADLRMSAMAPTPPQGEVDVD
CMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGET
ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLDA
RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN
GANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIV
RLLDEYNLVRSPQLHGTALGGTPTLSPTLCSPNGYLGNLKSATQGKKARKPSTKGLACGS
KDAKDLKARRKKSQDGKGCLLDSSSMLSPVDSLESPHGYLSDVASPPLLPSPFQQSPSMP
LSHLPGMPDTHLGISHLNVAAKPEMAALAGGSRLAFEPPPPRLSHLPVASSASTVLSTNG
TGAMNFTVGAPATLNGQCEWLPRLQNGMVPSQYNPLRPGVTPGTLSSQAAGLQHGMMGPL
HSSLSTNTLSPIIYQGLPNTRLTTQPHLVQPQQVQPQNLQIQPQNLQPPAQPHLSVSSAA
NGHLGRSFLSGEPSQADVQPLGPSSLPVHTILPQESQALPTSLPSSMVPPMTTTQFLTPP
SQHSYSSSPVDNTPSHQLQVPEHPFLTPSPESPDQWSSSSPHSNISDWSEGISSPPTSMP
SQITHIPEAFK
NT seq
7596 nt
NT seq
+upstream
nt +downstream
nt
atgccgcggctcctggcgcccttgctctgcctaacgctgctgcccgcgctcgccgcaaga
ggcttgagatgctcccagccaagtgggacctgcctgaatggagggaggtgcgaagtggcc
aacggcactgaagcctgtgtctgcagcagggcctttgtgggccaacggtgccaggacccc
aatccttgcctcagcacgccatgtaagaatgctggaacatgccacgttgtagaccatggc
ggcactgtggattatgcctgcagctgtcccctgggtttctctggtcccctctgcctgaca
cctctggacaatgcctgcctggccaacccctgccgcaatgggggcacctgtgacctgctc
actctcacagaatacaagtgccgctgccctccagggtggtcaggaaaatcatgtcagcag
gctgacccctgtgcttccaacccctgcgccaatggtggtcagtgcctgccctttgagtct
tcgtacatctgtggctgcccgcttggcttccatggccccacctgtaggcaagatgttaat
gagtgcagccagaaccctgggctttgccgccatggaggcacctgtcacaatgagatcggc
tcctatcgctgtgcctgccgtgccacccatactggtccccactgtgaactgccctacgtg
ccctgcagcccctcaccctgccagaatggaggcacctgccgccctacaggggacaccacc
cacgagtgtgcctgcttgccaggctttgctggacagaactgtgaagaaaatgtggatgac
tgtccaggaaacaactgcaagaatgggggtgcctgtgtggatggtgtgaatacctacaat
tgccgctgtcccccagagtggacaggtcagtactgcacagaagatgtggacgagtgtcag
ctcatgcccaatgcctgccagaatggtggaacctgccacaatacccacggcggctacaac
tgtgtgtgtgtcaatggctggactggcgaggactgcagtgagaacattgatgactgtgcc
agtgctgcctgtttccagggtgccacctgccatgaccgtgtggcttccttctactgcgag
tgtcctcatgggcgcacaggtctgctgtgccacctcaacgatgcatgcatcagcaacccc
tgcaacgagggctctaactgtgacaccaaccctgtcaacggcaaggccatctgcacctgc
ccctcggggtacacggggccagcctgcagccaggatgtggatgagtgtgctctgggtgcc
aacccttgtgagcacgcaggcaagtgcctcaacacactgggttcttttgagtgccagtgt
ctacagggctacacggggccccgctgtgagattgatgtcaatgagtgcatctccaaccca
tgtcagaatgacgccacttgcctggaccagattggggagttccagtgtatatgtatgcca
ggttatgagggtgtgtactgtgagatcaacactgatgagtgtgccagcagcccctgtctg
cacaatggccgctgcatggacaagatcaatgagttcctgtgtcactgtcccaaaggcttc
agcgggcacctgtgccagtatgacgtggatgagtgtgccagcacaccatgcaagaacggc
gccaagtgcctggatgggcccaacacctacacctgcgtgtgcacagaaggttacacaggg
acccattgcgaggtggacattgatgagtgtgaccctgacccctgtcactatggttcctgc
aaggatggtgtggccacctttacctgcctctgccagccaggctacacaggccatcactgt
gagaccaacattaatgagtgtcacagccagccgtgccgccatgggggcacttgccaggat
cgtgacaactcctacctctgcttatgcctcaagggaaccacaggacccaactgtgagatc
aacctggatgactgtgccagcaacccttgtgactctggcacgtgtctggacaagatcgat
ggctacgaatgtgcctgcgaaccaggctacacagggagcatgtgtaacgtcaacattgat
gaatgtgcgggcagcccctgccacaatggaggtacctgtgaggatggcatcgcgggcttc
acttgccgctgccctgagggctaccatgaccccacgtgcctgtcggaagtcaacgagtgc
aacagtaacccctgcatccacggagcgtgccgggatggcctcaatgggtacaagtgtgac
tgtgcccctgggtggagtggaacaaactgtgacatcaacaacaacgagtgtgagtccaac
ccttgtgtcaatggtggtacctgcaaagacatgaccagcggctacgtgtgcacctgccga
gaaggcttcagtggccctaactgccagaccaacatcaatgaatgtgcctccaacccctgc
ctgaaccaggggacctgcattgatgatgtcgccgggtacaagtgtaactgtcctctgccc
tatacaggagcaacatgtgacgtggtgttggccccatgtgccaccagcccctgcaaaaac
agcggggtatgcaaggagtctgaggactatgagagcttttcctgtgtgtgtcccacaggc
tggcaaggtcaaacctgcgagattgacatcaacgagtgtgtgaaaagcccgtgtcgccac
ggtgcttcctgccagaacaccaatggcagctaccgttgtctctgccaggccggctacacg
ggtcgcaactgtgagagtgacatcgatgactgccgacccaacccatgtcacaatgggggt
tcctgcaccgatggcatcaacacggccttctgcgactgcctgcccggcttccagggtgcc
ttctgtgaggaggacatcaacgagtgctccagcaatccctgccgaaacggtgccaactgc
accgattgtgtggacagctacacgtgcacctgccctgtgggcttccatggcatccactgc
gagaacaacacacccgactgcactgagagctcctgcttcaatggtggcacctgtgtcgat
ggtatcaactctttcacctgtctgtgcccgcctggcttcacgggcagctactgccagtat
gatgtcaatgagtgtgactctcggccctgtctgcatggtggcacctgccaagacagctat
ggtacctataagtgtacctgcccacagggctacactggcctcaactgccagaaccttgtg
cgctggtgtgactcggctccctgcaagaatggtggcaagtgctggcagaccaacacacag
taccactgcgagtgccgcagtggttggactggcctcaactgcgacgtgctcagtgtgtcc
tgcgaggtggctgcccaaaagcgaggcattgatgtcactctcctatgccagcatggaggg
ctctgtgtggatgaggaagacaagcattactgccactgccaggcaggctacacaggcagc
tactgtgaggaggaggtggacgagtgctcacctaacccctgccagaacggagctacctgc
actgactatcttggaggcttctcctgcaagtgtgtggctggctaccatgggtctaactgc
tccgaggagatcaacgaatgcctatcccagccctgccagaatggcggtacctgcattgat
ctgaccaacacctacaagtgctcctgccccaggggcacacagggtgtacactgtgagatc
aatgtcgatgactgccatcccccccttgaccctgcctcccgaagccccaagtgcttcaac
aatggcacctgtgtggaccaggtgggtggctacacctgcacctgcccaccaggcttcgtc
ggggagcggtgtgagggtgatgtcaatgagtgtctctccaacccctgtgacccacgtggc
acccagaactgtgtgcagcgtgttaatgacttccactgcgagtgccgggctggccacact
ggacgccgctgtgagtcagtcatcaatggctgcaggggcaaaccatgcaagaatgggggt
gtctgtgccgtggcctccaacaccgcccgtggatttatctgcaggtgccctgcgggcttc
gagggtgccacgtgtgagaatgatgcccgcacttgtggcagcttgcgctgcctcaacggt
ggtacgtgcatctcaggcccacgcagccccacctgcctgtgcctgggctccttcactggc
cctgagtgccagttcccagccagcagtccctgtgtgggtagcaacccctgctacaatcag
ggcacctgtgagcccacatccgagagccctttctaccgctgtctgtgccctgccaaattc
aacgggctgctgtgccacatcctggactacagcttcacaggtggtgctgggcgcgacatt
cccccaccacagattgaggaggcttgcgagctgcctgagtgccaggaggatgcaggcaat
aaggtctgcaacctgcagtgtaataatcacgcgtgtggctgggatggtggtgactgctcc
cttaacttcaatgacccttggaagaactgcacgcagtccctgcagtgctggaagtatttt
agtgatggccactgtgacagccagtgcaactcggccggctgcctctttgatggcttcgac
tgccagctcaccgaaggacagtgcaaccccctgtatgaccagtactgcaaggaccacttc
agtgatggccactgcgaccagggctgcaacagtgccgagtgcgagtgggatgggctggac
tgtgcagagcatgtacccgagcggctggcggccggcacgctggtgctagtggtactgctt
ccacctgatcaactgcggaacaactccttccacttcctgcgggagctcagccacgtgctg
cacaccaacgtggtcttcaagcgggatgcgcagggccagcagatgatcttcccctactat
ggccatgaggaggaactgcgcaagcacccgatcaagcgctctacaacgggctgggccacc
tcttcactgcttcctggcacgagtggagggcgccagcgcagggagctggaccccatggac
atccgtggctctattgtctacctcgagatcgacaaccggcagtgtgtacagtcgtcctcg
caatgcttccagagtgccaccgacgtggctgccttcctaggcgctctcgcctcacttggc
agcctcaatattccatacaagatcgaggcagtaaagagtgagccggtggagcctccgctg
ccctcgcagctgcacctcatgtatgtggcagcagctgccttcgtgctcctgttctttgtg
ggctgtggggtgctgctgtcccgcaagcgccggcggcagcatggacagctctggttccct
gagggtttcaaagtgtcagaggccagcaagaagaagcggagagaacccctcggcgaggac
tcagttggcctcaagcccctgaagaatgcctcagatggtgccctgatggacgacaatcag
aacgagtggggggacgaagacctggagaccaagaagttccggtttgaggagccagtggtt
cttcctgacctggatgatcagactgaccaccggcagtggacccagcagcacctggatgca
gctgacctgcgcatgtctgccatggccccaacaccgcctcagggtgaggtggatgttgac
tgcatggatgttaatgttcgaggaccagatggcttcacacccctcatgattgcctcctgc
agcggagggggccttgagacagggaacagcgaagaagaagaagatgcacctgctgtcatc
tctgacttcatctaccagggtgccagcttacacaaccagacggaccgcacaggggagacc
gccctgcacctggctgcccggtactctcgttcagatgctgccaagcgcttgctggaggcc
agtgcagatgccaacatccaagacaacatggggcgcacgccattacatgcggccgtttct
gcagatgctcagggtgtcttccagatcctgctccggaacagagccacagatctggatgcc
cgaatgcatgatggcacaaccccactgatcctggctgcgcgcctggccgtggagggtatg
ctggaagacctcatcaactcacatgctgatgtcaatgctgtggatgacctaggcaagtcg
gctttgcattgggcagccgctgtgaacaatgtggatgctgctgttgtgctcctaaagaac
ggagccaacaaagacatgcagaacaacaaggaggagactcccctgttcctggccgcccgt
gagggcagctatgagactgccaaagtgttgctggaccactttgccaaccgggacatcacg
gatcacatggaccgattgccgcgggacattgcacaggagcgtatgcaccacgatattgtg
cggcttttggatgagtacaacctggtgcgcagcccacagctgcacggcaccgccctgggc
ggcacgcccactctgtctcccacactctgctcgcccaatggctacctgggcaacctcaag
tctgccacacagggcaagaaggcccgcaagcccagcaccaaagggctggcttgtggtagc
aaggacgctaaggacctcaaggcacggaggaagaagtcccaggatggcaagggctgcctg
ttggacagttcgagcatgctgtcacccgtggactccctggagtcaccccatggctacttg
tcagatgtggcctcaccacctctcctcccctccccattccagcagtctccatccatgcct
ctcagccacctgcctggtatgcctgacacccacctgggcatcagccacttgaatgtggca
gccaagccggagatggcagcactggctggaggcagccggttggcctttgagccaccccca
ccacgcctctcccacctgcccgtagcctccagtgccagcacagtgctgagtaccaatggc
acaggggcgatgaatttcactgtgggtgcacctgcaaccttgaatggccagtgtgagtgg
cttccccggctccagaatggcatggtgcccagccagtacaacccactacggccgggcgtg
acgccaggcacgctgagctcacaggcggctggcctccagcatggcatgatgggcccacta
cacagcagcctctccaccaataccttgtccccgattatctaccagggcctgcccaacaca
cggctgactacacagccccacctggtgcagccccagcaggtgcagccacagaacttacaa
atccagcctcagaacctgcagccgccagcacagccacacctcagtgtgagctcagcagcc
aatgggcacctgggaaggagcttcctgagtggggagcccagccaggcggatgtacagcca
ctgggccccagcagtctgcctgtgcacactattcttccccaggaaagccaggccctgccc
acatcactgccatcctccatggtcccacccatgaccactacccagttcctgacccctcct
tcccagcacagctactcatcctcacctgtggacaacacccccagccaccagctgcaggtg
ccagagcaccccttcctcactccatcccctgagtctcctgaccagtggtccagctcctcc
ccgcattccaacatctctgattggtccgagggcatctccagcccgcccaccagcatgccc
tcccagatcacccacattccagaggcatttaagtaa
DBGET
integrated database retrieval system
