Arvicanthis niloticus (African grass rat): 117715238
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Entry
117715238 CDS
T08817
Symbol
Polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
117715238 (Polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
anu03021
]
117715238 (Polr1a)
Enzymes [BR:
anu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117715238 (Polr1a)
Transcription machinery [BR:
anu03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
117715238 (Polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
117715238
NCBI-ProteinID:
XP_034367841
EnsemblRapid:
ENSANLG00005008679
LinkDB
All DBs
Position
9:12599987..12664255
Genome browser
AA seq
1717 aa
AA seq
DB search
MLASKHTPWRRLQGISFGMYSAEELKKLSVKSITNPRYVDSLGNPSANGLYDLALGPADS
KEVCSTCVQDFNSCSGHLGHIDLPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAAIHLL
VCQLRVLEVGALQAVYELERILSRFLEETGDPSAFEIQEELEEYTSKILQNNLLGSQGAH
VKNVCESRSKLVTNFWKTHMAAKRCPHCKTGRSVVRKEHNSKLTIMYPAMVHKKSGQKDA
ELPEGVPAAPGIDEAQMGKRGYLTPTSAQEHLFAIWKNEGFFLNYLFSGLDDIGLESSFN
PSMFFLDFIVVPPSRYRPINRLGDQMFTNGQTVNLQAVMKDAVLIRKLLALMAQEQKLPC
EMTELTIDKENDSSVAIDRSFLSLLPGQSLTDKLYNIWIRLQSHVNIVFDSEMDKLMLEK
YPGIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVT
PWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDATQREAVAKQLLTPATGAPKPQ
GTKVVCRHVKNGDILLLNRQPTLHRPSIQAHRAHILPEEKVLRLHYANCKAYNADFDGDE
MNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQY
MELVYRGLTDKVGRVKLFRPAILKPFPLWTGKQVVSTLLINIIPEDYAPLNLSGKAKISS
KAWVKEKPRPVPDFDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGET
SGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVMRQRIIEESTQCGPRAVRAALNL
PEAASCDEIQGKWQDAHLGRDQRDFNMIDMKFKEEVNHFSNEINKACMPFGLHRQFPENN
LQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTG
RFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGS
VVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSKHLHEVLSRADPQKVLRHFKAIK
KWHHKHPSALLRKGAFLNFSQKIQAAVKALNLKGKTQNGRSPETQQMLQMWYELDEQSRW
KYQKRAAPCPDPSLSVWRPDIYFASVSETFEKKIDDYSQEWAAQAEKSYKKSELSLDRLR
TLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILM
VASANIKTPMMSVPVFNTKKALKRVKSLKKQLTRVCLGEVLQKVDIQESFCMGEKQNKFR
VYELRFQFLPHAYYQQEKCLRPEDILHFMETRFFKLLMEAIRKKNSKASAFRSVNTRRAT
QKDLDDTEDSGRTLREEERDEEEEGNIVDAEAEEGDADASDTRRKEKQEEEVDYESEEEG
EEEEEEEDVQEEGNIKGEGAHQGYEPDEEHGSGLEEESSQNPPRRHSRPQGAEAMERRIQ
AVRESHSFIEDYLYDTEESLWCQVTVKFPLMKINFDMSSLVVSLAHNAIVYTTKGITRCL
LNETTNDKNEKEFVLNTEGINLLELFKYSEVLDLRRLYSNDIHAMANTYGIEAALRVIEK
EIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIQSSSSPLQQMTFETSFQFLKQ
ATMMGSHDELKSPSACLVVGKVVKGGTGLFELKQPLR
NT seq
5154 nt
NT seq
+upstream
nt +downstream
nt
atgctggcctccaagcacacgccatggaggcggcttcagggcatctccttcgggatgtat
tcggcagaggagctcaagaagttaagtgttaaatccattacaaaccctcgctacgtggac
agcctgggaaacccgtcagcaaatggcctgtatgatttggctttgggtcctgcagattcc
aaagaagtatgctctacctgcgtgcaggacttcaacagctgctctggacacctgggccac
atcgatctcccgctcacagtctataaccctctcctcttcgataaactctacctgctgctc
cgaggctcctgtttaaattgccacatgctgacttgccctcgggctgcaattcacctattg
gtctgccagctgagggtcctggaagtcggagccctgcaagcagtctacgagcttgagcga
attctcagcaggtttctggaagaaactggggatccttctgccttcgaaattcaagaagag
ttagaagagtacacaagcaaaattctgcagaacaacctcttggggtcccagggtgcacat
gtgaaaaacgtatgtgagagcagaagcaaacttgtcactaacttctggaagacacacatg
gctgccaagcgctgtccacactgcaagacgggacggtcagtggttcgaaaggagcacaat
agtaagctaacaatcatgtacccagccatggtgcacaagaaatctggccagaaggacgca
gaactcccagaaggagtaccagcagctccgggaattgacgaggctcagatggggaagcga
gggtacctgaccccaaccagcgcccaagaacatctttttgccatttggaagaatgaagga
ttcttcctgaattatcttttttcgggattggatgatattggcctggagtccagtttcaac
cccagtatgttctttctagatttcatagtggtaccgccatccaggtatcgtcccatcaat
cgcctgggtgaccagatgttcactaatggccagacagtgaacttgcaagctgtcatgaag
gatgcagttttgatccggaaacttctggcattgatggcccaagaacagaaactgccctgt
gagatgacagaactcaccatagacaaggaaaacgactcctcagttgctatcgaccgatcc
tttctaagtttgcttccaggccagtctctcacagataaactttacaacatttggatccgc
cttcagagccacgtcaacattgtatttgacagtgagatggacaaattgatgttggaaaag
taccctggcataagacagatcctagagaagaaggaaggcctgttccggaagcacatgatg
gggaagcgagtggactatgctgcccgctcagtcatctgtccagatatgtacatcaacacc
aatgaaattggaattcccatggtatttgccacaaaactgacttaccctcagccagttacc
ccctggaacgtgcaggagctgagacaggcagtcatcaatggacccaatgtgcaccccgga
gcctccatggtcatcaacgaggacggcagtcgcacagccctgagcgcagtggatgcgaca
cagcgggaagctgtggccaaacagctcctgacgccagccacgggggctcctaagcctcag
gggacaaaagttgtgtgtcggcacgtgaagaatggcgacattctcctcctgaaccgccag
cccaccttgcacaggccttccatccaggcccaccgtgcccacattctgcctgaagaaaag
gttctgcgccttcactatgccaactgcaaggcctacaatgctgactttgatggagacgag
atgaacgcccacttcccccagagtgagctgggccgagcggaagcctatgtcctggcctgc
actgaccagcagtatcttgttcccaaggatggccagccattggcaggattgatccaagat
cacatggtttcaggcgcaaacatgaccattcggggatgctttttcacccgggaacagtac
atggagctggtgtaccgagggctcacagacaaagtgggacgcgtgaagctctttcgtccc
gccatcctgaagcccttcccactctggacaggaaagcaggtcgtgtcgaccctcctcata
aacatcattccagaggactacgctcccctgaatttatctggaaaggcaaaaatcagcagt
aaagcctgggtaaaggagaagccacggcctgttcctgactttgaccctgactccatgtgt
gagtcccaggtgatcatcagggagggggagctgctctgcggagtgctggacaaggcacac
tacgggagctctgcctacggcctggtccactgctgctatgagatctacgggggcgagacg
agcggcagggttctcacctgcctagcacgcctcttcactgcttacctacagctctataga
ggtttcaccttgggtgtggaagatatcttggttaagccaaatgcagatgtgatgagacag
cgcatcattgaagaatccacccagtgtggacctcgggctgtcagggctgcattgaacctg
ccagaagctgcatcatgtgatgagatccaagggaaatggcaggatgcccatctgggcaga
gaccagagggattttaacatgattgatatgaagttcaaggaggaagtgaaccatttcagc
aatgagattaacaaggcatgtatgccttttggcttgcacagacagttccctgagaacaac
ctgcagatgatggtacagtccggagccaaagggtcaaccgtgaacacgatgcaaatctct
tgcctgctgggccaaattgagttggaaggtcggagacccccactaatggcgtctggcaag
tcactgccctgctttgagccttacgagttcacccccagggctggtggctttgtcactgga
aggttccttactggtatcaggcctcctgagttcttcttccactgcatggcgggacgagaa
ggcctggtggacactgctgtcaaaaccagccgctctggctatctccaaaggtgtatcatc
aagcacctggaagggctggtcatccagtacgatctgacggtccgtgacagcgatggcagt
gtggtgcagttcctgtatggggaggacggcctggacatccccaagacacagttcctacag
cccaagcagttcccctttctggccagcaattatgaggtgataatgaaatccaagcatctt
catgaagttttatccagagcagatccccagaaagtgctacgccacttcaaagccattaaa
aaatggcatcacaagcatcccagtgccctgctgagaaaaggtgccttcctgaatttttcc
cagaagattcaggcagctgtgaaagccttgaacctaaagggcaagacccagaatggccgc
agcccagagacccagcagatgttacagatgtggtatgaattggatgagcagagccgatgg
aaataccagaagagggctgccccttgtcccgaccctagcctttctgtgtggcgcccagac
atctactttgcatctgtgtctgaaacatttgaaaaaaagattgatgactacagtcaggag
tgggcagctcaagcagagaagagttacaagaaatcagagctttccctcgacaggctgaga
accttactgcagctgaagtggcagcgctcactgtgtgacccaggcgaggctgttggcctc
ctggccgcccagagcatcggagagccctccacacagatgacactgaacaccttccacttt
gcaggcagaggcgagatgaacgtcaccttgggcattccaagactgagggagattctcatg
gtggccagtgccaacatcaaaacacccatgatgagtgtgcctgtgttcaacaccaagaaa
gcattgaagagagtgaagagtctgaagaagcagctcaccagggtgtgcctgggggaggta
ttgcagaaagttgacatccaggaatccttctgtatgggagagaaacagaataaattccgg
gtgtatgagctccggtttcagttcttgccacatgcatattaccagcaggagaagtgcctg
agacccgaggacatcttgcacttcatggaaaccagattctttaagctactaatggaagct
atcagaaagaagaatagcaaagcatcagccttcagaagtgtgaatactaggagagctaca
cagaaggacctcgatgacactgaggactcggggaggactctgagagaggaggaaagggat
gaggaagaagaggggaacattgtggatgctgaagctgaggagggggatgcagatgcttct
gacaccagacgcaaggagaaacaagaagaagaggttgactatgagagtgaggaagaagga
gaggaggaagaggaggaggaggatgtacaagaagaagggaacatcaaaggggaaggtgcc
caccagggctatgagcctgatgaggaacacggttcaggcctcgaggaggaatcatcccag
aaccctccccgccgccactccaggcctcagggagctgaggccatggaacgccggatccag
gctgtacgggagtcccactcattcattgaggactacctgtatgacacagaggagagcctg
tggtgccaggtgactgtgaagttcccactgatgaagattaattttgacatgagctccttg
gttgtgtccttggcccataatgccattgtgtatacgactaagggcatcactcggtgcctc
ctgaacgaaacgaccaatgataagaatgaaaaggagtttgtgctgaacacggagggaatc
aacctcctggagctgttcaagtactccgaggtactggacctgcgccgcctctactccaat
gacatccacgccatggccaatacttacggcatcgaggctgctctgcgggtgatcgagaag
gagattaaggatgtgttcgctgtgtatggcattgcagttgaccctcgccatctctccctg
gttgctgattacatgtgttttgagggtgtttacaaaccactcaatcgctttgggattcag
tcaagctcctcccctttgcagcagatgacatttgaaaccagcttccagtttctgaaacag
gccaccatgatgggatcccatgatgaactgaaatcaccttctgcctgcctcgtggtggga
aaagtcgtcaaaggcgggacaggcctgtttgagctcaagcagcccctaagatag
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integrated database retrieval system
