Arvicanthis niloticus (African grass rat): 117717177
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Entry
117717177 CDS
T08817
Symbol
Msh6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu01524
Platinum drug resistance
anu03430
Mismatch repair
anu05200
Pathways in cancer
anu05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
117717177 (Msh6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
117717177 (Msh6)
09162 Cancer: specific types
05210 Colorectal cancer
117717177 (Msh6)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
117717177 (Msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
anu03400
]
117717177 (Msh6)
DNA repair and recombination proteins [BR:
anu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
117717177 (Msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
117717177
NCBI-ProteinID:
XP_034370356
EnsemblRapid:
ENSANLG00005026422
LinkDB
All DBs
Position
11:complement(78507760..78524270)
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AA seq
1354 aa
AA seq
DB search
MSRQSTLYSFFPRSPALGDTKEAGASRKGAASSEASASRGRDAAWSEAGPGSRPAAVSAS
SPEAKDLNGGPRRSAAPAVPPSSCDFSPGDLVWAKMEGYPWWPCLVYNHPFDGTFIRKKG
KSVRVHVQFFDDSPTRGWVSKRMLKPYTGSKSKEAQKGGHFYSSKSEILRAMQRADEALS
KDKVKRLELAVCDEPSEPEEEEETEVPEAYLSDKSEEDNQNESEEEAQANVQGPRRSSRQ
VKKRRVISDSESDIGGSDVEFKPDSKQEGSSDEVSSGVGDSDSEDLGTFGKGAPKRKRTV
AAHGGLKRKSLKKETGSAKRATRILSETKSTLSAFSAPQNSDSQTHVSGGGNDSSGPTIW
YHETLEWLKPEKRRDEHRRRPDHPDFNSSTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVI
FYKVGKFYELYHMDAVIGVNELGLIFMKGNWAHSGFPEIAFGRFSDSLVQKGYKVARVEQ
TETPEMMEARCRKMAHVSKFDRVVRREICRIITKGTQTYSVLDGDPSENYSRYLLSFKEK
EEDSSGHTRIYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVEIVFEKGNLSTET
KTVLKGSLSSCLQEGLIPGSQFWDATKTLRTLLEGGYFAGTEDSSAMLPPVLKGMTSESD
SVGLTPGEERELALSALGGCVFYLKKCLIDQELLSMSNFEEYFPLDSDLVSTVKPGAVFT
STSQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERLDTCHTPFGKRLLKQWLCAPLCSPSA
ISDRLDAVEDLMAVPDKVTEVADLLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEE
TTYSKKKIIDFLSALEGFKVMRKITGLMEDVADGFKSKTLKQVVTLQTKSPKGRFPDLTT
ELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIKENEQSLLEYLDKQRSRIGCKSI
VYWGIGRNRYQLEIPDNFATRNLPEEYELKSTKKGCKRYWTKTIEKKLSNLINAEERRDT
SLKDCMRRLFYNFDKKYKDWQSAVECTAVLDVLLCLANYSQGGDGPMCRPVILLPGEDTH
PFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEAEENGKAYCVLVTGPNMGGKSTLIRQ
AGLLAVMAQMGCYVPAEKCRLTPVDRVFTRLGASDRIMSGESTFFVELSETASILRHATE
HSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSKNVCVRLGH
MACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFERM
NQSLRLFREICLASEKPTINSEAIHRLLALINEL
NT seq
4065 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacaaagcaccctgtacagcttcttccccaggtccccggcgctcggcgacacc
aaggaggccggggcctcacgcaaaggcgctgcctcctccgaagcctctgcttcccgcggc
cgggatgcggcctggagcgaggctggacctgggtcccggcccgcggctgtatccgcctcg
tcgccggaggcaaaggacctcaacggagggccgcggaggtcggccgcgccggccgtcccc
cccagttcttgtgacttctcaccaggtgatctggtttgggctaagatggaaggttacccc
tggtggccttgcctggtttataatcatccctttgatggaacattcatccggaagaaagga
aaatctgtccgtgttcatgtacagttttttgatgacagtccaacaaggggctgggttagc
aaaaggatgttaaagccatatacaggttcaaagtcaaaggaagcccagaagggaggtcat
ttctacagttcaaaatctgaaatactcagagcaatgcaacgtgcggacgaggccttaagt
aaagacaaggttaagagacttgagctggcagtgtgtgatgagccttcagagccagaagag
gaggaagagacagaggtgcctgaggcttatttatctgataagagtgaagaggataatcag
aatgagagtgaagaagaagcacaggccaatgttcaggggcctaggcgaagcagccggcaa
gtcaaaaagcgaagggtcatctcagactctgagagtgacattggtggctctgatgtagaa
ttcaagccagacagtaagcaagaaggaagcagtgacgaagtgagcagtggagttggagac
agcgatagtgaagacctgggtacctttggcaaaggtgccccaaagcggaagagaacagtg
gctgctcatggtggacttaaaagaaaaagtttgaagaaggaaacaggctcagccaaacga
gcaactcgaattctgtcagaaaccaagagtaccttgagtgctttctctgcccctcagaat
tctgactcccaaacccatgtcagtggaggaggtaacgacagcagtggacctactatttgg
tatcacgaaactttagaatggcttaagccagaaaagagaagagatgagcacaggagacga
cctgatcaccctgattttaattcctccacactgtatgtgcctgaagatttcctcaactct
tgtactccagggatgaggaagtggtggcagatcaagtctcagaactttgatcttgtcatc
ttttataaggtggggaagttttatgaattgtatcacatggatgctgttattggagtcaat
gagctggggctgatattcatgaagggcaactgggcccattctggttttccagagattgca
tttggccgattctcagattccttggtgcagaagggctataaggtagcacgagtggaacag
actgagactccagaaatgatggaggcacggtgtcggaagatggcacacgtatctaagttt
gatagagtggtgagaagggagatttgtaggatcattaccaagggcacacagacctacagt
gtgctggatggtgatccctctgagaactacagtaggtatcttcttagcttcaaagagaag
gaggaagattcttctggtcacactcgtatatatggtgtctgctttgttgacacttcactg
ggcaagtttttcataggccagttttcggatgaccgccactgttccaggtttaggactctg
gtggcacactatcctccagtagaaattgtgtttgagaaaggaaatctctcaacagaaacc
aaaacggtcctgaagggctcactgtcatcttgtcttcaggaaggtctcataccaggttcc
caattttgggatgccactaagactttgcgaacactccttgaaggagggtattttgctgga
actgaagacagtagtgcaatgctgcccccagtgcttaaaggtatgacctcggagtcagat
tctgttgggttgacaccaggagaggagagggaattggctctctctgctctaggtggttgt
gtcttctacctcaagaaatgcctaattgatcaggagcttctctcaatgtctaattttgaa
gagtatttccccctggattctgacttggtcagcacagtaaaacctggtgctgtctttact
agcaccagtcagcgaatggtgctagatgcagtgacattaaacaacctggagattttcctg
aatgggacgaatggctccactgaagggactctgctagagaggctagatacttgccatacc
ccctttggcaagcggctcttaaaacagtggctttgtgccccgctttgcagcccttctgct
attagtgaccgtttagatgctgtagaagatctgatggctgtgcctgacaaagtcactgaa
gttgcagacctcctaaagaaactcccagatcttgagaggctactgagtaagattcacaat
gttgggtctcccctaaaaagccagaaccatccagacagcagggctataatgtacgaagaa
acgacatacagcaaaaaaaagattattgattttctttccgctctagaaggattcaaagta
atgcgtaaaattacagggcttatggaagatgttgctgatggtttcaagtctaaaaccctt
aagcaggttgttactctacagacaaaaagtcctaaaggccgttttcctgatctgaccaca
gaactgaaccgatgggatacagcttttgaccatgagaaagctcggaagactggactcatt
actccaaaagcagggtttgactctgattatgaccaagcacttgctgatataaaagagaat
gaacagagcctcctggagtacttagacaaacagcgcagtcggattggctgcaagagcata
gtctactggggaattggaaggaaccgttaccagttagaaattccagacaattttgctacc
cgtaatctacctgaagaatatgagttgaaatctactaaaaagggctgtaaacgatattgg
accaaaacgattgagaagaaattatccaatcttataaatgctgaagaacgtagggacaca
tctttaaaggactgcatgcggcgtctgttctataactttgataaaaagtacaaggactgg
cagtctgctgtagagtgcactgcagtgttggatgttctactgtgcctggctaactatagt
caaggaggagatggtcctatgtgtcgcccagtaattctgttaccaggagaagatacacat
cccttcttagagcttaaagggtcacgacatccctgcattacaaagactttttttggagac
gattttattcctaatgacattctaataggctgtgaggaagaagcagaggaaaatggcaaa
gcctattgtgtgcttgtgactggaccgaatatggggggcaaatctacactcataagacag
gctggtctgttagctgtaatggcgcagatgggttgttatgtacctgctgagaagtgtagg
ctcacaccagttgatagagtgtttactagacttggtgcctcagatagaataatgtcaggg
gaaagtacattttttgttgagttgagtgaaactgctagcatacttaggcatgcaacagaa
cattctttggtgcttgtggatgaattaggaagaggtacagcaacttttgatgggacagca
atagccaatgcggttgttaaagaacttgctgaaaccataaagtgtcgtacactgttttct
acacactatcattcattagtagaagattattctaaaaatgtttgtgtgcgcctaggacat
atggcatgcatggtggaaaatgaatgtgaggaccccagccaggagactatcactttcctc
tataaattcattaagggagcttgtcctaagagctatggctttaatgcagcaaggcttgct
aatcttccagaggaggttattcagaagggacacagaaaagcaagagaatttgagaggatg
aatcagtcactacgcctatttcgggaaatttgtcttgctagtgaaaagccaactataaac
agtgaagctatccataggttgctggctttgattaatgaactgtag
DBGET
integrated database retrieval system
