Arvicanthis niloticus (African grass rat): 117723061
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Entry
117723061 CDS
T08817
Symbol
Tarbp1
Name
(RefSeq) probable methyltransferase TARBP1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
anu03016
]
117723061 (Tarbp1)
03036 Chromosome and associated proteins [BR:
anu03036
]
117723061 (Tarbp1)
Enzymes [BR:
anu01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
117723061 (Tarbp1)
Transfer RNA biogenesis [BR:
anu03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
117723061 (Tarbp1)
Chromosome and associated proteins [BR:
anu03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
117723061 (Tarbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpoU_methylase
Motif
Other DBs
NCBI-GeneID:
117723061
NCBI-ProteinID:
XP_034378329
EnsemblRapid:
ENSANLG00005016263
LinkDB
All DBs
Position
18:complement(52128954..52180834)
Genome browser
AA seq
1579 aa
AA seq
DB search
MERVLADALLTQSREPCALLGALCGGEASAERAETLRLVLQRLEERGAGAGALAKAAHEV
AEGHLVPLLHASQGGGPVGSRVLRAASAALRSCARLAGPELAVTLAEDALSELPSAPAVE
LLAAVAPCLRAPEDAPLLRRLARASVELALAGDAPPAVGARLLPALAQSAEPALRAAWDA
LSSAGPGAEGSTGPELLVLSALAEKLLPNHERHGDLDARLCDRFWRTVQAGLGRAQDALT
RKRARYLLQRAVQVSGELAVDCSCGPQDIKGPSLFWWSEKKKDELLKFWENYMLIMEVLE
GNQIHVIKPVLPKLNSLFEYAVSEENGCWLFHPSWHMCVYKRMFEGENKILAREGVIHFL
ELYEVKSLPYSPELSEFVTGPLMDALSESCLYSRSPGQPLGSDSPLGLKLQKFLVAYTSL
LPEETKSHFLLKFIQRMADRHWCAVPVLFLSRALASVPRCKALGGEGLLALRDVLQCTMI
THQVLLRGAAQCYLLQTAMRLVDVEKVSLSDVSAFLMSLRQEESLGRGTVLWTELCDWLR
VNERYFKQSSIGGSDGREASLNAYVKNLVQEFVKSPGWEKESSFMPDWLEARLTALMVLL
AVDVEGMKTKFREKQRAQNVLRIFLDPLLDALGKLGTNAYMPLLRTDRCLQLLVRLLHSC
VPRGSGAQDDEVSTALQASIMSAAESVAQFVLRRLTMKELQDVADLDRCQLYLTVLAELL
RLQVKLGWKAGNPVSRVISPLKNACVRHLQEAEGRQEPTLSQQVQRAVSMATLAALCEAV
DQHPVLQPDSPNAEPVDRFLSALPLNHMLQKPRSEEQNIGVCPLENGSVFEESSSSKGWG
KIVAQYLHDQWVCLSFLLRKHHPLIPAKENDMLECFLPAVEMPVQTLQSALDVLTVLPAG
CILPVFRCMEVLVPQLLTSEETLCIESFDVAWKIIASLSNTQLTFWPNLKAFVHFVFDHE
ILTIAAKIKGQAYSKIKEIMCKMIEMSSIKSGVFNVLIRHCCQSWLAAASGVSQGSFSSA
KDYSELVLEACVFGTVFRRDQRLIQDVQTFIENLGPSCAANIIIENTKREDYYVRICAIK
FLCLLDGSDMSHKLFLEDLAAKLLDKDESASRSRTRYHENSLQHRVKNRVWQTLLVLFPA
FDQKFLHGIIDKVFHAGFTNNQASIKYFIEWLIILILHKFPEFLPKFWACFSYGEEKIKT
SICTFLSVLSHLDIIVQNIPEKKLVLKRALTVALQWCLSHNFSVRLYALVALKKAWHLCE
ALQFEECGAWTTVIECSLSQAESMHGAGNARKNWQRIQDHFFFSTFHPLKDYCLETIFYT
LPRLSGVTEEEWITLDKFASFTDIPSNAGSQWYLSGTALGELSPGDWSQQDQGSTLGEAD
SQSEWADVQKKIIPWGHSALESDLELAFQDRAAKLGKSISRLIVVASLIDKPTNLGGLCR
TCEVFGAAVLVVGSLQCVSDRQFQHLSVSAEQWLPLVEVRPSQLMDYLQQKKVEGYTVIG
VEQTAQSSDLAQYRFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGA
LLIWEYTRQQLLGCAGPPS
NT seq
4740 nt
NT seq
+upstream
nt +downstream
nt
atggagcgggtgttggcggacgctcttctaacgcagagtcgggagccctgcgcgttgctg
ggcgcgctgtgcggcggcgaggcgagtgcggagcgggcagagactctgcgcctggtgctg
cagcggctggaggagcgcggcgccggcgccggcgcgctggccaaggcggcacatgaggtg
gccgagggccacctggtgcccttactgcacgcgtcccagggcggagggcctgtggggtcc
cgcgtgctccgagcggcgagtgccgcgctgcgctcgtgcgcgcgcctggcaggtcccgag
ctggcggtcactttggccgaagacgcgctgagcgaactgccgagcgcgccggccgtggag
ctgctggccgccgtggcgccgtgtctgcgcgcgccggaggatgccccgctgctgcgtcgc
ctggcacgcgcgtctgtggagctggcgctggccggggacgcgcctccggccgtgggagcg
cgcctgctgcctgcgctggcacagagcgcagaacccgctctgcgggcggcgtgggacgcg
ttgagctccgcggggcccggagctgaaggtagcactgggccagagctgctggtgctgagc
gccctggcggagaagctgctgcccaaccatgagcgtcacggggatctcgacgcccgtctc
tgcgaccgcttctggagaaccgtacaggcggggctgggccgcgcgcaggacgcgctcacg
cgcaagcgcgcgcgctacctgctgcagagggctgtacaggtgtctggagagctggcggtg
gattgctcctgcggccctcaggacataaagggtccgagcctattctggtggtctgagaag
aaaaaagacgagcttttaaagttttgggaaaactacatgttgatcatggaagttttagaa
ggaaaccagatacatgtcataaagccagtcttaccaaagctaaacagtctgtttgaatac
gcagtatcagaggagaatggctgctggctcttccatccttcctggcacatgtgcgtctat
aaaagaatgttcgaaggcgagaataaaattctggccagagaaggcgtgatccacttcttg
gagctgtatgaagtgaaatcgctcccttattctccagaactctcagagtttgttactggc
ccgctgatggatgccctctcagagagctgcctgtacagcaggtccccagggcagccactg
ggaagtgactctcccctgggattaaagctgcagaagtttttagtcgcttacacttccctt
cttccagaagaaacaaagagtcatttcctgttaaagttcatccagaggatggcagacaga
cactggtgtgcagtgccggttttgttcctgtccagggctttagcaagcgtgcccagatgt
aaggccctgggtggagaagggcttcttgccctcagggatgttctccagtgcaccatgatc
acgcaccaggtcctcctgaggggagcagcgcagtgttatcttcttcagacagccatgcgt
ctggtggatgtggagaaagtgtctctttctgacgtctcagcttttctcatgtctctgaga
caagaggaatccttgggacgtgggacggtgctgtggacagagctctgtgactggctgcgt
gttaatgaaagatactttaagcagtcctcaatcggtggctctgatggacgtgaggcatcc
ttaaatgcttacgtgaagaacctagttcaggagttcgtgaagtctcccggttgggaaaaa
gaaagcagcttcatgccagactggctggaagccaggctgactgcactgatggtcttgctg
gctgtggacgtggaaggaatgaagactaaattcagggaaaagcagagggctcagaacgtg
ctgaggatcttcttagaccccttgctggatgccctagggaagctcggcaccaatgcctac
atgcccttgctgaggactgaccggtgcctccagctgctggtgaggttgctgcattcttgt
gtgccaagaggttccggtgcccaggatgatgaggtatccactgcgctccaggcatccatc
atgtctgctgcggagagcgtggctcagtttgtgctcaggagacttaccatgaaggagctg
caggacgtggcagatctggaccgctgccagctctacctgaccgtgttggccgagctcttg
agactccaggttaagctgggctggaaagcaggcaacccggtcagccgggtcatttctcct
ttgaaaaacgcatgtgttcgccatcttcaggaggccgagggcagacaggagccgaccctg
agtcagcaggtacagagagcagtcagcatggccaccctggcagctctgtgtgaggctgtg
gaccagcacccagtgctgcagcctgactctcccaatgctgagcctgtggacaggttcctg
tcagcccttccactcaatcacatgctgcagaagccccgttcagaggagcagaacatcggt
gtatgtcccctggagaatggcagtgtctttgaagaatcatcatcttccaaaggatggggg
aaaatagtcgcacagtatctacatgatcagtgggtctgcctctccttcctgctgagaaag
caccacccccttattccagccaaggaaaatgacatgctggagtgttttctccctgctgtt
gagatgcctgtgcagaccctgcagtcagcgctggacgtcctcacggtcctccctgccggc
tgcatcttgcctgtgttccgctgcatggaggtgctggttccccagctcctgacttccgag
gagacactctgcatagaatcctttgatgtggcttggaaaatcatagcttccttgagcaac
acacagctgacattctggcctaacttaaaagcttttgttcactttgttttcgatcatgag
attcttactattgccgcaaaaatcaagggccaggcatattccaaaataaaagagattatg
tgcaagatgattgaaatgtcctccataaaatcaggcgtcttcaatgtcctgatacgtcac
tgctgccaatcttggttagcagctgcttctggtgtgtcccaggggtcattttccagtgct
aaggattacagtgaacttgtcctggaggcttgtgtgtttggaacagtgtttaggcgagat
cagagactcattcaagatgtccaaaccttcatagaaaaccttggaccaagctgtgcagca
aatatcatcattgagaacactaagagagaagattattatgtgagaatctgtgccatcaaa
ttcttgtgtctgctagatggctccgacatgtcccacaagttgttcttagaagatcttgct
gccaagctcctggataaggatgagtcagcatccaggtccagaactcgataccatgagaac
tccctccagcaccgggtgaagaaccgtgtgtggcagactctgcttgtcctcttccctgca
tttgatcagaaattcttacatgggattattgataaggttttccacgctggcttcacgaat
aatcaagcgtccataaaatattttattgagtggcttattatattgattcttcataaattc
cctgagtttcttccaaagttctgggcgtgtttttcttacggtgaagaaaaaattaaaaca
agcatttgtacatttttatctgtcttatcacatttggatatcatcgttcagaatatccca
gaaaagaagctggttctgaagcgagccctcaccgttgccctgcagtggtgtctgagccac
aacttcagcgtccggctctatgctctggtagccctcaagaaggcctggcatctgtgtgaa
gcactgcagtttgaagagtgtggcgcttggaccacagttatcgagtgcagcctcagccaa
gcagagagcatgcatggagcagggaacgccaggaagaactggcagcgcatccaagaccat
ttcttcttctccacctttcaccccctgaaggactactgtctggagaccatattttacacg
ctcccacggctctccggtgtcactgaagaagagtggatcacactggataaatttgccagc
ttcacagacatcccttccaatgcagggtcccagtggtacctgtctgggactgcacttggt
gagctgagtccaggagactggtcacagcaggaccaaggttctactttgggtgaagcagac
agccaatcagagtgggctgatgtccagaaaaaaatcatcccttggggacacagtgctctg
gagtcagacctggagcttgcgtttcaggatcgggctgccaagcttggaaagtccattagc
agactgatcgttgtggcctcactcatcgacaagccaaccaacctgggagggctgtgcagg
acctgtgaggtgttcggggctgcagtacttgtcgtcggcagtcttcagtgtgtcagcgac
agacagttccagcacctcagtgtctctgcagagcagtggcttcctctggtggaggtgaga
ccatcccagctgatggattatctgcagcagaaaaaggtggaaggctacactgtcattggt
gtggagcagacagcgcaaagctcagacctggcccaataccgcttccctgagaagtcgcta
ctgttgttgggaaatgagcgggaaggaatcccagccaacctgatccagcagctggatgtg
tgtgtggagatccctcagcagggcatcatccgctcactaaatgtgcacgtgagtggggct
ctgctgatctgggagtacaccagacagcagctgctcgggtgtgcagggccaccatcctga
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integrated database retrieval system
