Amphiprion ocellaris (clown anemonefish): 111567184
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Entry
111567184 CDS
T06018
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
111567184 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aoce03400
]
111567184 (msh6)
DNA repair and recombination proteins [BR:
aoce03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
111567184 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
111567184
NCBI-ProteinID:
XP_023123906
Ensembl:
ENSAOCG00000004934
LinkDB
All DBs
Position
Unknown
AA seq
1382 aa
AA seq
DB search
MAKQSSLFNFFTKSPPSVSKPKPKPSPSPAEADLPSSVQKSNSSPKEQAKQTPTQQPAKD
KKVQQKSKSKTASGGFKKLFGDKTPAAKDNSSTCPFSAGALVWAKLEGHPWWPCMVVPQP
LTGQQMRGRGRAQRIHVHFFDEPPTRGWVSVKYVREYQGSDSSDAKTGGVFFSGKPVIRR
AMELADAVLFDTPEKRLKMPLCMDPSDDEEDDDDEEMELDNSVLTDEELSDVDEEKHEEA
KPSKVCQHSSRASTKKGNKAKRRRIIVASDSDGSDEEFKPEHAASSSEDEEEEGTVSSEE
EEESTQESEVESPIKPVKRKRPVEKSANTKAKLPTGPSAAPKRAPATVGANTKSRLSAFS
APDTFESQANGSGSTAGVTIWDHEKLEWVQDGRRKDSKRRRQSEDDYDPTTLYVPEDFLN
RNTPGMRRWWQLKSEMFDTVIFYKVGKFYELYHMDAVIGVNELGLTFMKGTWAHSGFPEI
GFGRFSDVLVQKGYKVARVEQTETPEMMEARCKTLAKPTKFDRVVRREVCRIITRGTQTY
SVLDGAPSESQSKFLLSLKEKAEEESSGQYRTYGVCFVDTSVGCFHVGQFPDDRHCSRLR
TLIAHFSPAEVLFEKSNPSIETRKILKASLSSALQEGLNAGTQFWDAQKTLKTLSEEDYF
KESADSEQKSGFLPALLKKMTSETDSLCLTPKEGYEMALSALGGCIFYLKKCLVDKELLS
MANFEEYVPVDVEMEKADGPASFFAQTRQRMVLDGVTLANLEIFQNGSGGTEGALLERLD
TCCTPFGKRLLKQWLCAPLCNPTSIRDRLDAVEDLMGAQAQATEVSDLLKKLPDLERLLS
KIHSIGTPLKGQDHPDGRAVLYEEVTYSKRKIADFLSALEGFKTMQEIISVFDQVFGEFR
STLLCQVVTVKTEKNGLFPDLSAELRRWETAFDHQKARTTGVITPKAGFDPEYDQALTGI
RNCERELLDYLDRQKKRLGCKSMAYWGTGRNRYQMEVPDSVSERNIPEEYEVKSTKKGWK
RYVTKESERLFSELQGFEEKRDAALKDCMRRLFYNFDKNYKDWKTGVECMAVLDVLLALS
RYSQGGDGPMTRPQVVLPEDNNQVAPFIDLTGSRHPCVTKTFFGDDFIPNDIFIGCSGSS
EVEEEEGRASCVLVTGPNMGGKSTLMRQCGLVIILAQLGCYVPAESLRFTPVDRVFTRLG
ASDRIMAGESTFFVELSETASILHHATKHSLVLLDELGRGTATYDGTAIASAVVKELAEK
ICCRTLFSTHYHSLVEDYAKNPAVRLGHMACMVENECEDPSQETITFLYKFITGACPKSY
GFNAARLASLPEEVIQSGHRKAREFERSTVTLRLFKKLCLFAEDATLDSTHFASLLQLLN
TL
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagctcacttttcaattttttcacgaagtctccgccgtcggtctccaag
ccgaagccgaagccgagcccttccccggccgaggcagacctgccctcctccgtacagaag
tccaactcctctccgaaggaacaagctaaacagaccccgacacagcagccagccaaggac
aaaaaagttcaacagaagagtaagtccaagactgccagcgggggattcaagaaactattc
ggcgacaagaccccagcagccaaagacaacagctccacatgcccgttcagtgctggggcc
cttgtgtgggcaaaactggaaggccacccctggtggccttgcatggtagtgccccaacct
ctgactggacagcagatgaggggccgtggtcgggcccagcgcatacatgttcatttcttt
gacgaacctcctaccagaggatgggtcagcgtcaaatatgtcagagagtatcaaggctct
gacagcagtgatgctaaaactggaggggtgttcttcagtggcaaacctgtaatccgtcgg
gcaatggagcttgctgatgcagtactgtttgacacccctgaaaaaagattgaagatgcct
ctctgcatggatccatctgatgatgaagaggatgatgacgatgaagaaatggagcttgac
aattcagtactgactgatgaagagctcagtgatgtggacgaagaaaaacatgaggaagca
aagccctccaaagtttgtcaacattcatcccgtgcgtcaacaaagaaggggaacaaagcc
aagcggcgtcgcattattgtagcctcagacagtgatggatcagacgaggaattcaaacca
gaacatgctgcatctagcagtgaggatgaagaggaagaagggacagtgagcagtgaggag
gaggaggagagcacccaggagtcagaagtagaaagccccattaagcctgtaaagcgcaaa
cgtcccgtagaaaagtctgcaaatacaaaagcaaaactacctactggaccgtctgctgca
cccaaacgagccccggcaaccgtcggagccaacacaaagtctcgtttgtcagccttctcg
gctcctgacacctttgagagccaggcaaatggatcaggctccaccgcaggtgtaactatt
tgggatcatgagaagctggagtgggtacaggatggcaggaggaaagacagcaaaaggcgc
cgacagtcagaggatgactacgatcccaccaccctgtatgtgccagaagactttctaaac
agaaacacacccggtatgcgtaggtggtggcagctcaaatctgagatgttcgatacagtg
attttctacaaggtgggaaagttttatgagctctaccacatggatgctgtgattggtgtc
aacgagctgggactaacattcatgaaggggacctgggcacactctggctttccagagatc
ggctttggacgtttctcagatgtgctggttcagaagggctacaaggtggctcgtgtggag
cagacggagaccccagagatgatggaggcacgctgtaagaccttggctaaacccacaaaa
tttgaccgtgtggtgagaagagaggtgtgccgtattatcacacgcggtacccaaacttac
agcgtgttggacggtgctccttcagagagtcagagcaagttcctcctgagtttgaaagag
aaggctgaagaggaaagctctggtcagtaccgcacctatggagtctgctttgttgatacc
tctgtgggttgttttcatgtcggtcagttcccagatgatcgtcactgctcacgcctgcgt
actctgatagcacacttttcccccgctgaggtgctctttgaaaagagtaatccatccatt
gaaacacgcaaaatactcaaagcctctctgtcctctgctctccaggaaggacttaatgct
ggaacacagttctgggatgctcagaagactcttaaaaccctttcagaagaagattatttt
aaagagtctgctgacagtgagcagaagagcggttttctccctgctcttctgaaaaagatg
acctctgagactgattcactgtgccttactcctaaagagggctatgaaatggcattgtct
gctttgggtggatgcatattctacctgaagaaatgtctggtagacaaagagttgctgtct
atggctaacttcgaagaatatgtccctgttgacgttgagatggagaaagctgacggacct
gccagcttctttgcccagactcgtcagcgtatggtccttgatggagtgactctggctaac
ttggaaatctttcagaatgggtcaggagggacagaaggggcgctgttggagcgtttggac
acctgctgtaccccatttggcaagaggctgctgaagcagtggctctgtgctcctctatgt
aaccccacatccatcagagacagactggatgcagtggaggacctgatgggagctcaggct
caagctactgaggtttcagacctgctgaaaaagctccccgatctggagcgtctcctgagt
aaaatccacagcattggcactcctctgaagggccaggaccaccctgatggcagagcagtt
ctctacgaagaggtcacttacagcaagcgcaagatagctgacttcctctcagcactggaa
ggtttcaaaacaatgcaagagatcatttctgtcttcgatcaagtttttggcgaatttcgt
tccacattgctgtgccaagttgtcactgtgaagactgaaaagaatggcctctttccagat
ctctctgctgagctgaggcgctgggagactgctttcgaccaccagaaagcccgcactact
ggtgtcataacccctaaagctggctttgaccccgagtacgaccaggctctgacaggaatc
agaaactgtgagcgggagctgctggactacctggacagacagaagaagagacttggctgt
aaaagcatggcctactggggaactggacgaaaccgctatcagatggaggttcccgacagc
gtctcagagaggaacatccccgaagagtatgaggtgaagtctacgaagaaaggctggaag
cgttacgtgacaaaggagagtgaacgcctgttctcagagctgcagggatttgaggagaag
agagatgctgcactgaaagactgcatgaggaggcttttctacaactttgacaagaactac
aaagactggaagactggtgtggagtgcatggcagtgctcgatgtgctgctggctttgtca
cgctacagccagggtggagacggaccaatgaccaggccgcaggtggtgctcccagaggac
aacaaccaggtagcacccttcattgacttgaccggatcccgccacccctgcgtcaccaag
accttttttggggacgatttcattcctaatgacatcttcattggctgctcgggaagcagt
gaagttgaagaggaggaaggtcgggcctcttgtgtccttgtcaccggaccaaacatgggt
ggaaaatctactctcatgagacagtgtggactagtgatcattctagcccagctgggttgc
tatgttccagcagagagcctccgcttcacaccagttgacagggtcttcacccggctggga
gcctcagatcgtatcatggctggagagagcaccttctttgtggagctgagcgagacggcc
agcatcctgcaccatgccactaaacactcacttgtgctcctggatgaattaggaaggggc
acagccacatacgatggcacagcgattgccagtgcggttgtgaaagagcttgctgagaag
atctgctgtcgcactctcttctctacacattaccactccctggtggaggactatgccaaa
aaccctgccgtgcgtttgggccatatggcgtgcatggtggaaaacgaatgcgaggatcca
agtcaagagaccatcacattcctctacaagttcatcactggcgcttgcccaaagagttac
ggattcaacgctgctcgactcgccagcctgccagaggaagtcattcaatcaggacacagg
aaggccagagagtttgagaggagcaccgtcactctcagactcttcaagaagctctgcctg
ttcgctgaagatgctacactggacagcacacactttgcttcactccttcaactgctcaac
accctgtaa
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integrated database retrieval system
