Amphiprion ocellaris (clown anemonefish): 111580982
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Entry
111580982 CDS
T06018
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111580982 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aoce03021
]
111580982 (polr1a)
Enzymes [BR:
aoce01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111580982 (polr1a)
Transcription machinery [BR:
aoce03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
111580982 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
CDC45
HMG_box
SURF2
Pox_C7_F8A
Motif
Other DBs
NCBI-GeneID:
111580982
NCBI-ProteinID:
XP_023144708
Ensembl:
ENSAOCG00000017336
LinkDB
All DBs
Position
Unknown
AA seq
1690 aa
AA seq
DB search
MLFGKEVPWRRLEGMSFGMYSAEELRKLSVKTITNSRFLDAVGNVAPNSLYDLALGPADN
KEVCSTCCQDFNNCPGHLGHVELPLPVYNPLFFDKLYLLIRGSCLACHTLTCPRAAIHLL
LNQLKLVEHGAMQEVYQLEQLLNQQLEENPKATGDEIELWLREFTDAVVGEKTEASANVK
PIKHLVEKKCSLINEFWSVQMKTRKCPHCRSGRSTVRREHNSKLIVTMPSGAQSSGETDE
DLMAGKRVYLTASTAREHVNKLWEKEGFFLKRLFSGLEESTGSKKGDKGFCPDLFFLELL
LVTPCRYRPINRLGDQMFTNGQTVNMQAVMKDCGVIRKLLALIAGEKNTEEAEAPEETDQ
TFLAAVPGRTLTDKLYNMWIRLQSHVNIVFDSDMDKLMTEKYPGIRQILEKKDGLFRKHM
MGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVINGPNVHP
GASMVINEDGRRTILSAANLAQREAVAKELLTPSPGPQKMPMKIVNRHIKNGDVLLLNRQ
PTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYMLVS
TNQQYLVPKDGKPLAGLIQDHMVSGTKMTIRGCFFTRDQYTELVYRGLTDKPGRVKLLPP
AILKPRRLWTGKQVVSTLLLNVIPEKAVPLNLAGKSKIPSKAWIQVPPRAAPGYKPDSMC
DSQVVIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTAYLQLYR
GFTLSVEDILVKPGANNRRKKIIQESLKFGTKALQAAFNLPSNVDQAEAQSRWQDAHLNP
DQRDFSMADHKFKEVANQVNNDINKVCMPAGLHTSFPDNNLQLMVQSGAKGSTVNTMQIS
CLLGQIELEGRRPPLMPSGKFLPCFQPYDPAPGAGGFVSGRFLTGIKPQEFFFHCMAGRE
GLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQ
PRQFPFIEDNYEVIRRSQGLDEVLARFDPQTASSHFAAIQRWKAKREVACPRRGAFLLFS
QKKLAKLKQTEQEAPPGSTRDPAVLQLLQQWHDLDEASRSKYNRKSSRCPEPSLGLFRPD
VCFGSVSENFHDITEKYLQNRGGMNEDSMDTHSLRQLLHYKWQRSLCDPGEAVGLLAAQS
IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMSIPVLNNKKALKRA
KTLRKKLTRVCLAEVLQKVDVLEKLRIENHQKLRTFKVTFHFLPADRYSEDKLLSPHQIL
KYMETRFFRLLLEAIKKRSAKLASIAVETRKATPRDRDTDGEGTADATGVDDGDGEEERE
IVDDEGNEGDADASDAKRRDKQEEEVDYESQDEDEGDNDEDEEDQIEKAEEKAEENSETN
TVEEPQPESAGVRAKRSNKKVAVGETLDQMRVTSVLASNSAIEGYCYDYQRELWCEVDLV
LPVSKVHFDLASVLSTLAQNAVVMETKGLTRCLLSETTTKNGEKETILNTEGINMHEIFK
YSDILDLNRLYSNEVHAMAKTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVADYMCF
EGVYKPLNRHAIGSNSSPLQQMTFETSYKFLKQATMLGSHDQLVSPSACLVVGKVVKGGT
GLFELKQPLQ
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atgttgttcggaaaagaagtgccatggcggcgcctggagggcatgtcgttcggcatgtac
tccgccgaggagctccggaagttgagtgtgaagacgatcactaactccaggttcctcgat
gctgtcgggaatgtggctccaaacagcctgtatgatctggccctcggaccagcagacaac
aaagaggtgtgttcaacctgctgtcaggattttaacaactgtccaggacaccttggacat
gtcgagctgcctctgcccgtctacaacccactgttctttgataaactctacctgctgatc
cgtggctcctgtctggcgtgtcacacgttaacgtgtccccgagctgccatccacctgctg
ctgaaccagctcaagttagtggaacacggagccatgcaggaggtctaccagttagaacaa
cttctcaaccagcaactggaggagaatcctaaagctactggggatgagatcgagctgtgg
ctgagggagttcacagacgccgtagttggggagaaaactgaagcttctgcaaacgtgaag
cctattaaacacttggttgaaaagaagtgcagtctgataaatgaattttggagtgtccag
atgaaaactaggaagtgccctcactgcagaagcggcaggtcaacagtccgtcgtgaacac
aacagtaagctgatcgtcacgatgccgtcaggagcgcaaagcagcggcgaaactgatgag
gatctgatggctggaaagagagtctacctgactgccagtacagccagagaacacgtcaac
aagctgtgggaaaaagaaggtttcttcttgaagcgtctgttctcggggctggaggaaagc
actggatcaaagaagggagacaagggtttctgtccggacctgtttttcctggagctgctg
ctggtcacaccttgcaggtatcgtccaatcaatcgactgggtgaccagatgttcaccaac
ggccagacagtcaacatgcaggccgtcatgaaggactgtggagtcataaggaagctgctg
gctctcatagcaggggagaaaaacacagaggaggcagaggctccagaagagacagaccag
acttttctagctgcggtgcctggacgtacgttaacagataaactatacaacatgtggatc
cgcctacagagccacgttaacattgtttttgacagtgacatggacaaactgatgacagag
aaataccctggaatcagacagatccttgagaagaaggatggattgttccggaaacacatg
atgggcaaacgagtggattatgctgccagatctgtcatctgtccagacatgtacatagga
accaatgagataggaataccaatggtctttgccaccaagctgacctaccctcagccagtc
actccatggaacgtgaaggagcttcgtcaggccgtcattaatgggcccaacgtccaccct
ggagcctccatggtgataaacgaggatggcaggaggaccatcctttcagctgccaacctc
gcacagagggaggcggttgccaaggaactgctgacaccttctccaggtccacaaaagatg
cccatgaagatagtgaatcgtcatatcaagaatggagatgttttgttacttaacagacaa
ccaactctgcacagaccctccatacaagcccactgtgctcgcatcttaccaggagagaag
gttctaagactccattatgccaactgcaaggcatacaacgctgactttgatggggatgaa
atgaatgctcacttccctcagagtgagctgggcagagcagaggcctacatgttagtcagc
actaaccagcagtacctcgtccccaaggatggtaaacctttggcaggtctgatccaggac
cacatggtgtcaggaacaaagatgaccatacgaggctgcttcttcaccagagaccagtac
actgagctggtgtaccgaggactcactgacaaaccaggcagagttaagttgctgcctcca
gccatcctcaaaccacgacgactgtggacaggaaaacaggtggtgtctacgctgctgctg
aatgtaatcccagagaaagcggtgcctcttaacctggctggcaaatcaaaaatccccagc
aaagcatggatccaagtcccaccacgagctgctccaggatacaaacctgacagcatgtgt
gactcacaggtggtgatccgtcagggcgagctgttagttggtgttctggacaaagctcac
tatggctcctcggcctacggtttggtccactgctgctacgagctgtatggaggggagacc
agcggcaaactgctcagctgcctggctcgactcttcactgcctacctgcagctatacaga
ggcttcaccctgagtgtggaggacattttagtgaaaccaggtgccaacaaccggaggaaa
aaaatcattcaagaatcattgaagtttggcaccaaagccctgcaggcagcgttcaacctg
ccttctaatgtggatcaagctgaggcccagagtcgctggcaggacgcccacctcaaccca
gaccagagagacttcagcatggccgaccacaagttcaaagaagtagccaaccaagtgaac
aacgatatcaacaaggtgtgtatgccagccggcctgcacacctctttcccagacaacaac
ctccagctgatggtccaatcaggagccaagggatctacagtgaacacgatgcagatctcg
tgtctcctgggtcagattgaattggagggccggaggcctcctctgatgccttctggcaaa
ttcttgccctgtttccagccatatgacccagcacctggtgctggaggctttgtttctggg
agattcctcacaggcatcaaaccacaggagtttttcttccactgtatggccggtagagaa
gggctggtcgacacagctgtgaaaacatcaagatcaggatatctgcagagatgtgtgatt
aagcatctggagggtttggtggtgcagtacgacctgacagtgagggacagtgatggatct
gtggtgcagttcctatatggtgaagatggattggacatccccaagactcagttcctgcag
ccacgacagtttcccttcatagaggacaactatgaggtcatcaggaggtctcagggcctg
gatgaggttttggcccgtttcgaccctcagactgccagtagccactttgcagccatccag
cgatggaaagcaaagagagaggtggcctgtccacggagaggagcgttcctgttgttttct
cagaagaagttggcaaaactaaaacagactgaacaagaagctccgcccggctccaccaga
gatcctgctgtactccagctcctacagcaatggcacgatctggatgaagccagcagatca
aagtataacaggaagtcctcccgctgccctgagccttcgctgggcttgtttaggcctgat
gtctgctttggatcagtatctgaaaacttccacgacatcacagagaagtacctgcagaac
agaggcggtatgaatgaagacagcatggacacacacagccttcgccagctgctgcactac
aagtggcagcgttctctgtgtgatccaggtgaagccgtcggtctgctggcagctcagtcc
atcggagaaccctccacccagatgaccctcaacaccttccacttcgccggcagaggagag
atgaacgtgactctgggaattcctcgactgagagagatcctgatggtggccagctccaac
attaaaacccccatgatgagcatcccagtgctgaacaacaagaaggccttgaaaagagca
aagacgctgcgcaaaaaactcaccagagtgtgtctggctgaggtgctgcagaaggtggat
gtgctggaaaaattgcggattgaaaatcatcaaaagctgcggacgtttaaagtcacattc
catttcctgccagcagaccgttacagtgaggataagctgttatcgcctcaccagatccta
aagtacatggaaacaaggtttttccgtctccttcttgaagccattaagaagcgctctgcc
aagctggcctctatcgccgtggagacgaggaaagccacccctagagatagggacaccgat
ggtgaaggaacagctgatgcaacaggggtggatgatggagatggagaggaggagagagag
attgttgatgatgaggggaatgaaggagatgctgatgcttcagatgccaagagaagagac
aaacaggaagaggaggtcgactacgaaagtcaggacgaagacgaaggtgacaatgacgag
gatgaagaggaccagatagagaaggcggaggagaaggcagaggagaactcagagacgaac
actgtggaggagcctcagccagagtctgcaggagtgagagccaaaaggagcaataaaaag
gtggcagtaggagagactctggatcagatgagagtaacctctgttctggcatcaaactct
gcgatagagggctactgctatgattaccagcgtgagctctggtgtgaggttgacctggtg
ctgccggtgagcaaggtgcacttcgatctggcctcagtcctgtcaacactggcccagaac
gcagtcgtcatggaaaccaaggggctgacgcgctgcctgctgagcgaaactacaaccaaa
aatggtgaaaaagagacgattctcaacacagagggaatcaacatgcacgagatattcaag
tacagcgacatcttggacctcaaccgactgtactccaacgaggtccacgccatggctaaa
acgtacgggattgaagtggctctgaaggtcatagagaaggagatcaaagatgtctttgct
gtttatggtatcgaggttgaccccagacatttgtcactggtagccgactacatgtgcttt
gaaggtgtatataagccattaaaccgccacgccatcggatcaaactcctctcctctgcag
cagatgacctttgagaccagttacaagttcctcaaacaggctaccatgctgggttcccac
gatcagctggtgtcaccctcagcctgcctggtggtggggaaggtggtgaaaggaggaaca
ggactgtttgaactgaaacaacctcttcagtag
DBGET
integrated database retrieval system
