Asparagus officinalis (garden asparagus): 109828019
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Entry
109828019 CDS
T05243
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109828019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109828019
Enzymes [BR:
aof01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
109828019
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
109828019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
Motif
Other DBs
NCBI-GeneID:
109828019
NCBI-ProteinID:
XP_020250643
LinkDB
All DBs
Position
Unknown
AA seq
494 aa
AA seq
DB search
MAARQLSFLKIAFIFNFHSEKLLPSNFSILNFAVIASTTNTFAARFTLFLWFCCQNLALS
LGFRSRRKCRGFADSSSRRRRSSGSRWAPIPTSTVAVAARGPTRRRSSAHARLPLATWIP
ISAHHNIAIFTWKGATVEVDGVSEVEYVADETPMVSYVNVHAVLDGRRIRAIKAAASGSD
INSTQGPRVMVVGPTDSGKNSLSSMLLNWACKRSWKPTFVDLDIGQGSISIPGCIAATPV
KLPIDAAGRTPLELPLVYFYGHTTPSTNIELYKVLLKEMAETVELQFSKNIESRAAGMVI
NSMGWIEGVGYELLLHAIDTFKADVILVQGQEKLYSMLKGKRNVDVVKLHKSGGVVSRSA
KVRELTRSLRIRDYFYGSVKGLSPHAYTVNFNDISVFRIGGGPQAPRSALPIGAEPVANP
IRLVTVSINRELLHSVLAVSYAKEQDQILSSNVAGFVNVIDIDMQRKVLTYLSPCPGELP
GKLLVSGTLTWSES
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atggctgctagacaattatcttttctcaagatagcctttatcttcaacttccacagtgag
aaattactcccgtcgaatttctcgatcttgaacttcgccgtcattgcttctaccacgaac
accttcgccgctcgcttcactctctttttgtggttctgctgtcaaaatttggcgctttct
ctcggttttcgaagccgaagaaaatgtcggggattcgccgattcgagctcgagaaggaga
cggagctccggatcgaggtgggccccgattccgacctcgacggtcgctgtcgccgcgcgg
ggccccacgcgccgacgatcttcggcgcacgcgaggctccctctcgccacctggatcccg
atctccgcccaccacaacatcgccatcttcacttggaaaggggctacggtggaggtggat
ggagttagtgaggtggagtatgttgctgatgaaacaccgatggtgagctacgtgaatgtg
catgcggttcttgatgggcgaaggattcgagctatcaaggctgctgcttccggcagtgat
atcaattcaacgcagggtccaagagtaatggttgtaggacctacagattctggaaaaaat
agcttgtcaagtatgcttcttaactgggcctgcaaacgtagctggaaacctacttttgtc
gatttggatatcggccagggatctatttccattccaggatgtattgctgctactccagtt
aaattgccaatagatgcagctggaaggactccattggaattgccccttgtttacttttac
ggacacaccactccaagtaccaacatagagctgtacaaagtcctcctcaaggaaatggct
gaaacagtggagctacagttttccaagaatattgaatctcgagctgctggcatggtaatc
aactcgatgggatggattgaaggtgttggttatgagttgcttcttcatgcaattgacact
tttaaggctgatgtaattctagtccagggacaggagaagctttacagcatgcttaaggga
aagcgaaatgtagatgttgttaaacttcacaaatccggtggtgttgtttcgaggagtgct
aaagtccgtgaactgaccagaagtcttcggatcagggattacttttatgggtcagtgaag
ggtctatctccgcatgcatatacagtaaacttcaacgatatatctgttttccgaattggt
ggtggtccacaggcacctcgttcagcacttcctataggggcagagcctgttgcaaatcct
attcgacttgtaactgtcagcataaaccgcgaattgcttcattcagttcttgctgtttca
tatgcaaaggagcaagatcaaattctctcaagtaatgttgcagggtttgttaatgtcata
gatatcgatatgcagagaaaagtactcacatatctttctccttgcccgggagagctccct
ggaaagctactggtttcggggacgctaacatggtcggagagctag
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