Asparagus officinalis (garden asparagus): 109841114
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Entry
109841114 CDS
T05243
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 3-like
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03020
RNA polymerase
aof03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
109841114
09124 Replication and repair
03420 Nucleotide excision repair
109841114
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aof03021
]
109841114
03400 DNA repair and recombination proteins [BR:
aof03400
]
109841114
Transcription machinery [BR:
aof03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
109841114
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
109841114
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_L
RNA_pol_A_bac
Motif
Other DBs
NCBI-GeneID:
109841114
NCBI-ProteinID:
XP_020265573
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All DBs
Position
5:124311996..124322546
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AA seq
322 aa
AA seq
DB search
METTVSYQRFPKVRIREMKDEYCKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNS
SVLNDEFIAHRLGLIPLTSDNAMRMRFSRDCDSCDGDGQCEFCSVEFHLNVCCDSDQTLD
VTSADLRSAEASVIPVDLAVKALAMESSSTSYEAAEQRGIIIVKLRRGQELRLRAIARKG
IGKDHAKWSPAATVTFMYEPDIHINEDLMETLSLDEKRAWIESSPTKVFDLDPNTGQVVV
VDPEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFIFTVESTGAIKASQLVLNAIDVLRQK
LDAVRLQDAEENDFSELKAHLG
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atggagaccacagtctcctaccaacgattccccaaggtgcggatccgagaaatgaaggac
gaatactgcaagttcgagctccgagagaccgacgcgagcatggccaacgccctccgccgc
gtgatgatcgccgaggtccccaccgtcgccatcgacctcgtcgagatcgaggtcaactcc
tccgtcctcaacgacgagttcatcgcccaccgcctcggcctcatcccgctgacgtccgac
aacgcgatgcgcatgcggttctcacgtgactgcgattcttgcgacggcgacggccagtgc
gagttctgctcggttgagtttcatcttaatgtttgttgtgactccgatcagacgctggat
gtgacgagtgcggatcttaggagtgcggaggcgagtgtgattccggtggatcttgcggtg
aaagcgctggcgatggagtcgagctcgacgagctatgaggctgctgagcagaggggaata
ataatcgtaaagttgcgtcgtgggcaagaattgagattaagagctatagcaaggaaagga
ataggcaaggaccatgccaaatggtctcctgctgcaactgtaacttttatgtatgagcct
gacattcatattaatgaggacttgatggaaaccttatcgcttgatgagaaaagggcctgg
attgaaagcagtcctaccaaagttttcgaccttgatccaaatacaggacaggtggtggtg
gttgaccctgaagcatacacttacgatgatgaggtgatcaagaaagcagaggcaatgggg
aaacctgggctagttgagattaacgcgaaggaagacagtttcatcttcaccgtggaatcg
actggtgccatcaaggcttcccagttggtgctcaatgcaattgatgttctgaggcagaag
ctggatgctgttcgtcttcaggatgctgaagagaacgacttcagtgaactgaaggcgcat
cttgggtag
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