Acyrthosiphon pisum (pea aphid): 100163129
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Entry
100163129 CDS
T01076
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
api
Acyrthosiphon pisum (pea aphid)
Pathway
api03020
RNA polymerase
api03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
api00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100163129
09124 Replication and repair
03420 Nucleotide excision repair
100163129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
api03021
]
100163129
03400 DNA repair and recombination proteins [BR:
api03400
]
100163129
Enzymes [BR:
api01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
100163129
Transcription machinery [BR:
api03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
100163129
DNA repair and recombination proteins [BR:
api03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
100163129
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
100163129
NCBI-ProteinID:
XP_008186710
APHIDBASE:
ACYPI004235
UniProt:
A0A8R2B8V6
LinkDB
All DBs
Position
A1:162231344..162245663
Genome browser
AA seq
1862 aa
AA seq
DB search
MAASDSKAPIRSVKRVQFGILSADECRRMSVTEGGIRFAETMEGGRPKLGGLMDPRQGVI
DRFSRCQTCAGNMTECCGHFGHIELAKPVFHVGFVTKAIKILRCVCFYCSKLLVSPTHPK
VKEIVMKSKGQQRKRLAFIYDLCKGKNICEGGDELDINKDNVNDPNMPPKKQGHGGCGRY
QPTIRRVGLDLTAEWKHVNEDSQEKKIPLTAERVHEILKHITDEEVVIMGMDPKFARPDW
MVLTVLPVPPLPVRPAIVMFGSMRNQDDLTHKLSDIIKCNNELIRNEQSGAATHIIAENI
RMLQYHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI
TPDPNLRIDEVGVPRTIAQNMTFPEIVTPFNIDHMLELVRRGNSQYPGAKYIIRDNGERI
DLRFHPKPSDLHLQCGYKVERHIKDGDLVVFNRQPTLHKMSMMGHRVRVLPWSTFRMNLS
CTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAIRK
MTKRDVFLEKEQMMNLLMHLPIWDGKMPTPCILKPKPMWTGKQLFSLIIPGNVNLIRTHS
THPDEEDNGPYKWISPGDTKVMVEHGELVMGILCKSTLGTSAGSLLHICFLELGHEVCGR
FYGNIQTVVNNWLLYEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMDLEP
TPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGAKGSNINISQVIAC
VGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGL
IDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLSGEAVEFQSIA
TIEPSHKKFEAEFKFDVSNERHMRKIFNEDVLKDLTGSNDSVTELEREWEQLTTDRDTLR
EIFPSGESKVVLPCNLKRMIWNVQKIFHINKRGQTDLNPVKVINGVKELLDKCVIVAGGD
ELSKKANHNATLLFQCLVRSTLCTKLVSERFRLSSEAFEWLIGEIENRFKQAQAQPGEMV
GALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAA
ARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIREDQEFVNVYYEMPDFDPSRI
SPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNADKLILRIRIMNGEDG
KMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTDAKKRIIITDT
GEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSVEKEMNTV
LNFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAAAH
AEVDPMRGVSENIIMGQLPRMGTGCFDLLLDSEKAKDGIEIPMDNGYMGMGAGGMFMGAG
TPSMSPAMTPWDQTSTPVYQNSWSSSLEAGMTPGGPGFSPAGSSEASGTSPFWMTSGGTP
GSPGSPGMATSPYVPSPNSMSPNYNYPSSPQFGSMSPSMTPTNYSPTSPQYSATQQNTPK
YSSMSPNYNYSPTSPSYSPTSPSYSHTSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPQY
TASSPSYTPSATSGASNYKYSPTSPSLAVSPTYSPTSPMYSPSNASYSPSSVQHTPNAGV
TQYNQSYSPSSPVYSPTNFSLASPRYSPTSPTYSPGVGSPNYSPSSPSYSPTSPNYSGPE
EQ
NT seq
5589 nt
NT seq
+upstream
nt +downstream
nt
atggccgccagtgactcaaaggctccgatccgaagtgtcaaacgagtacagttcggtata
ttgtctgcggacgaatgtcgacgtatgtcggtcacagaaggtggcattcggtttgcagag
actatggaaggggggcgccctaaacttggtggacttatggatcctcgacaaggtgttatt
gatcgattttcaagatgtcagacatgtgccggtaacatgactgaatgttgtggccatttt
ggtcatatcgagctagctaaacctgtatttcatgtagggtttgtaactaaagccataaaa
atcctgcgctgtgtttgtttttattgttccaaattattagttagccctactcatcccaaa
gtaaaagaaattgttatgaaatcaaagggacagcaaagaaaacgtttagcgtttatatat
gatttatgtaaaggcaaaaatatttgtgaaggtggtgatgaactagatattaataaggat
aatgtcaatgatcctaatatgcctccaaaaaaacaaggacatggtggttgtggtcgttat
caacccactatacggcgtgtaggcttagatttaactgctgaatggaagcatgtcaatgaa
gattctcaggaaaaaaaaatacctttgactgctgaacgtgtgcatgaaattttgaaacat
ataactgatgaagaagttgtaatcatgggaatggatcctaaatttgcacgtcctgattgg
atggtactaacagttttacctgttcctcctttacctgtccgtcctgctattgttatgttt
ggatcaatgagaaatcaagatgatttaactcacaaattgtctgacataataaaatgtaat
aatgaattaattcgcaatgaacaatctggcgctgctactcatattatagcagaaaatata
agaatgttacaataccatgttgctactttagtagataatgatatgcctggtctaccaagg
gcaatgcaaaaatctggtaaacctttaaaagcaattaaagcacgattgaaaggtaaagaa
ggaagaatacgaggaaatttgatgggaaaacgtgtagatttttctgctcgaactgtaatt
acccctgatccaaatttgagaattgatgaagttggtgtacctcgtactattgctcaaaat
atgacatttcctgagattgttaccccatttaacatagatcatatgttggagttagttcgc
cgtggcaattctcaatatccgggcgctaagtatattatacgtgataatggcgagagaatt
gatttacgttttcatcctaaaccttcagatttgcatttgcaatgtggttataaagttgaa
agacatattaaagatggtgatttagtagttttcaatagacagcctactttacacaaaatg
agtatgatgggtcatagagttcgagttctaccttggtctacattcagaatgaatttaagt
tgtacctctccttataatgctgattttgatggtgacgaaatgaatcttcatgttccacaa
tctatggaaacaagagcagaagtggaaaacatccatattactcctagacaaattattact
cctcaagctaataaacctgttatgggaattgtgcaagatactttgacagctatcagaaaa
atgacaaaaagagatgtatttcttgagaaagaacaaatgatgaatttattaatgcaccta
ccaatttgggatggaaaaatgcctactccatgtattcttaaacctaaaccaatgtggact
ggtaaacaacttttctcactgattatacctggaaatgtcaacttgatacgtactcattct
actcaccctgatgaagaagataatggaccttataaatggatatcacccggtgatacaaag
gtaatggttgaacatggtgaactagtgatgggaatattgtgtaagagtaccttaggtact
tcagctgggtcattactccatatttgttttttggaattggggcatgaagtgtgtggacgg
ttctatggtaatattcagactgtggttaataactggcttttatatgaaggtcattctatt
ggtattggtgatactattgctgatcctcaaacttatttggaaattcaaaaagctattaaa
aaagccaaggaagacgtaattgaagttatacaaaaagctcataatatggatcttgagcca
acgcctggtaatacacttcgtcaaacttttgaaaatcaagtaaatagaattttaaacgat
gctcgtgacaaaactggaggttctgccaagaaatctttgactgaatacaacaatctcaaa
gctatggttgtgtcaggagctaaaggttctaatattaatatttctcaggttattgcttgt
gttggacaacaaaatgttgaaggcaagcgtataccgttcggttttcgtaaacgcacactg
ccacatttcattaaagatgattatggtccagagtctagagggtttgttgaaaattcatat
cttgctggtttaacaccatcagaattctactttcacgctatgggtggtcgggaaggtctt
attgatactgctgtaaaaactgctgaaactggttatattcaaagacgtttgataaaagct
atggagtcagttatggttcactatgatggaactgttcgtaactcggttggtcagttgatt
cagttgcgttatggtgaagatggtcttagtggtgaagctgtagagttccagagtattgcc
actatagaaccatcacacaagaaatttgaggccgagtttaagtttgatgtttcaaatgag
agacacatgaggaaaatatttaatgaagacgtgttaaaagacttgactggtagcaatgac
agtgtaactgaattagaaagagaatgggaacaattaactaccgatagagatactttaaga
gaaatatttccttctggagaaagcaaagtggtattaccatgtaatttaaaacgtatgatt
tggaatgtacaaaaaatttttcatattaacaaacgagggcaaacagacttgaatccagtc
aaagttataaatggagtcaaagaattgttagacaagtgtgttattgtggctggtggagat
gagttgagcaaaaaagctaaccataatgccacattattgtttcaatgtttggtgcgttcc
actctttgtactaagctagtgtcagaaagatttcgtttatcatctgaagcatttgaatgg
ttaattggagaaattgaaaatagatttaaacaagctcaggcacaaccgggtgagatggta
ggagcattggcagctcaaagtttaggagaaccagctactcaaatgacattgaatactttc
cattttgctggtgtatcctcaaagaatgtaactcttggagtgcctagattgaaggaaatc
atcaacataagtaaaaagccaaaagcaccatctttgactgtatttttgaccggagctgct
gctagagacgcagaaaaagctaaaaatgtactgtgccgccttgaacatactacattgaga
aaagttacagccaacactgctatttattatgatcctgatcctcaaaatacagttattaga
gaagatcaggagtttgtaaatgtttattatgaaatgcctgactttgatccatcaaggatt
tcaccatggttgttacgtattgaattagatagaaaaagaatgactgataaaaaattaact
atggaggcaatatctgaaaagatcaatgcaggttttggtgatgatctcaattgtatattc
aatgatgacaatgccgataaattaatcctacgtatacgtataatgaatggtgaggatgga
aaaatgaatggaggtgacgatgaagatactgctgataaaatggaagatgatatgttcctt
agatgtattgaagcaaatatgttgtctgatatgaccttacaaggtatagaagccatagca
aaagtgtacatgcatttgcctcaaacagatgccaaaaaaagaataatcattactgatact
ggagagtttaaagcaattgctgattggttgttggaaactgatggtaccagcttaatgaaa
gtattgagtgaaagagatgttgatcctgtgagaacattttcaaatgatatttgtgaaata
ttttcggtattgggcattgaagctgtacgaaagtctgtagaaaaagaaatgaacactgta
ttgaatttttatggtctgtatgtaaactatcgccatttggcattgttgtgtgacgtaatg
acagctaaaggtcacttgatggctattactcgacatggtattaacagacaagatactgga
gctttgatgagatgttcatttgaagaaacggttgatgtgttgttggatgcagctgcacat
gctgaagttgatccaatgagaggagtgtctgagaatatcattatgggacaattgcctaga
atgggaacaggttgtttcgatttacttttggattctgaaaaggctaaggatggtatagaa
ataccaatggataatggttacatgggtatgggtgctggtggtatgtttatgggtgctgga
acaccatcaatgtctcctgctatgacaccttgggatcaaacttccacaccagtttatcaa
aatagctggtcgtcaagtttggaagctggtatgactcctggtggacctggattctctcca
gctggatcaagtgaagctagtggaacatctccattctggatgacaagtggaggaactccg
ggtagtcccggatctccaggcatggcgactagtccatatgtgcctagccctaattcgatg
tcaccaaactacaattatccatcaagcccacaatttggttctatgtcaccatctatgact
cctactaattattcaccaacaagtccacaatattcggccacacaacaaaatactccaaaa
tactcttctatgtcgcctaactacaactattctccaaccagtccatcatattcgcctaca
agtccatcctactctcatacttcatattcaccaacaagtccttcgtatagcccaacatct
ccatcatatagcccaacatcgccttcgtatagcccaacatctccatcatacagtcctact
tctccatcatacagccctacatctccctcatacagccctaccagtccttcatacagtccc
acgtctccgtcgtatagtccaacatctccatcgtatagtccaacttctccatcgtatagc
cctacatcgccatcttatagcccaacttcgccatcatatagcccaagctcaccacaatat
acagcatcttcaccttcctatactcctagtgctacatcgggtgccagcaattacaaatat
tcacccacgtcgccttcacttgctgttagtccaacatactctccaaccagtccaatgtat
tcaccatcaaatgcgtcatactctccatcttctgtacaacatacaccaaatgctggagtt
acacagtacaaccagtcttacagccccagttctccagtttactcgcctaccaacttctca
ttagcaagtcccaggtactctcccacatcaccaacatattcacctggtgttgggagtcca
aattattctccatcttcacccagctattctccaacatctccaaactatagtggacctgaa
gaacaataa
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