Anas platyrhynchos (mallard): 119715428
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Entry
119715428 CDS
T02816
Symbol
POLR2A
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
apla
Anas platyrhynchos (mallard)
Pathway
apla03020
RNA polymerase
apla03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
apla00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
119715428 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
119715428 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apla03021
]
119715428 (POLR2A)
03400 DNA repair and recombination proteins [BR:
apla03400
]
119715428 (POLR2A)
Enzymes [BR:
apla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
119715428 (POLR2A)
Transcription machinery [BR:
apla03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
119715428 (POLR2A)
DNA repair and recombination proteins [BR:
apla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
119715428 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
119715428
NCBI-ProteinID:
XP_038028662
LinkDB
All DBs
Position
Unknown
AA seq
1885 aa
AA seq
DB search
NIEEDILEFFLGGVKSWSFLIFFWSRNPGISEILEPSPGLHLLVPKPKGGSGGGGAGVHS
VSPPAPLDDPGAVFWQNNPKIKDILGKSKGQPKKRLTHVYDLCKGKNICEGGEEMDHKFG
VEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEVL
KRVSDEECFVLGMDPKFARPEWMVCTVLPVPPXAVRPAVVMQGSARNQDDLTHKLADIVK
INNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKG
KEGRVRGNLMGKRVDFSARTVITPDPNLAIDQVGVPRSIAANMTFAEIVTPFNIDRLQEL
VRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLH
KMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMI
VTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPL
WTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSL
GTSAGSLVHISYLEMGHDTTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNT
IKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNN
FKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVEN
SYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQ
VVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFKFDYTNERALRRTLQEELVKEVLSN
AHIQNELEREFEKMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINSRLPSDLH
PVKVVEGVKELSRKLVIVNGEDPLSRQAQENATLLFNIHLRATLCSRRMAEEFHLSGEAF
DWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLK
ELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPIPQSTV
VAEDQEWVNVYYEMPDFDVSRISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNC
IFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQIS
KVYMHLPQTDNKKRIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEI
FTGLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTSRGHLMAITRHGVNRQDIG
PLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKHGME
IPSAIPVLGVGGSTGMFFGSAPSPMGAMSPAMTPWNQGATPAYRAWSPSVGSGMTPGGAG
FSPSAASDASGFSPGYSPAWSPTPAPRAPPAPPAPTSPPQAGPCPPATAPRRPPTSPARP
GATPRRAPVTAPPRPVTARLLPVTAPPAPTTAPHLPVTAPLLPVTAPPRPATARLLPATA
PPRPVTAPLLPVTARPRPATAPPPPVTARLLPVTARHPPATAPLLPVTARHPPVTAPPRQ
LQPDFSQLQPHLSQLQPNQPQLQPHLAQLHPDQPELQPDFSQLQPHQPQLHPDFAQLQPH
IPQLQPHLSQLQPHQPQFLPIQPPLHPAVSHLHPQQPQLQPQQPQLQPHQPQVHPDQPQL
QPQLPRVHPDQPQVQPHIPQVQPHHPQIQPHVPHLQPHLARLHPHQPQVQTPRPPPTAHL
HFGSLMFLGKTIVTSLLGIIKVLVI
NT seq
5655 nt
NT seq
+upstream
nt +downstream
nt
aatattgaggaagatatcctggaattttttttggggggggtaaaatcctggagttttttg
atttttttttggagcagaaatcctggaatttccgaaatcctggagccgtcacctgggctc
catctcctcgtccccaaaccgaagggaggcagtgggggggggggggcgggggttcattct
gtttcccccccagcccccctcgatgaccccggtgccgttttctggcagaataaccccaaa
atcaaggacatcctgggcaagtcgaaggggcagcccaaaaagcggctgacgcacgtctac
gacctgtgcaaggggaagaacatctgcgagggcggcgaggagatggaccacaaatttggg
gtcgagcagcccgagggcgacgaggacctgaccaaggagaagggccacgggggctgcggg
cggtaccagccgcggatccggcgctcggggctggagctgtacgcggagtggaagcacgtc
aacgaggactcccaggagaagaagatcctgctgagccccgagcgcgtgcacgaggtgctg
aagcgcgtgtcggacgaggagtgcttcgtgctgggcatggaccccaaattcgcccggccc
gagtggatggtctgcactgtgctgcccgtgccccccntcgccgtgcgccccgccgtcgtc
atgcagggctcggcgcgcaaccaggacgacctgacgcacaagctggccgacatcgtgaag
atcaacaaccagctgcggcgcaacgagcagaacggggcggccgcgcacgtcatcgccgag
gacgtcaaactgctgcagttccacgtggccaccatggtggacaacgagttgcccgggctg
ccccgcgcgatgcagaagtcggggcggccgctgaagtcgctgaagcagcggctgaagggc
aaggagggccgcgtgcggggcaacctgatgggcaagcgcgtggacttctcggcccgcacc
gtcatcacccccgaccccaacctggccatcgaccaggtgggcgtcccccgctccatcgcc
gccaacatgaccttcgccgagatcgtcacccccttcaacatcgaccggctgcaggagctg
gtgcggcgggggaacagccagtacccgggggccaagtacatcattagggacaacggggac
cgcatcgacctgcgcttccaccccaaacccagcgacctgcacctgcagaccggctacaag
gtggagcggcacatgtgtgacggggacatcgtcatcttcaaccggcagcccacgctgcac
aagatgtccatgatggggcaccgcgtgcgcatcctgccctggtccaccttccgcctcaac
ctcagcgtcaccaccccgtacaacgcggactttgacggggacgagatgaacctgcacctg
ccgcagtcgctggagacgcgggcggagatccaggagctggccatggtgccgcgcatgatc
gtcaccccgcagtccaaccgccccgtcatgggcatcgtgcaggacacactcaccgccgtc
cgcaagttcaccaagcgcgacgtcttcctcgagcgcggcgaggtgatgaacctgctgatg
ttcctgtcgacgtgggacgggaaggtgccgcagcccgccatcctaaaaccccgcccgctg
tggacggggaaacaaatcttctccctcatcatccccgggcacatcaactgcatccgcaca
cacagcacccaccccgacgacgaggacagcgggccctacaagcacatctcccccggggac
accaaggtgatcgtggagaacggggagctgatcatgggcatcctgtgcaagaagtccctg
ggcacgtcggccggctcgctggtgcacatctcctacctggagatgggccacgacaccacg
cgcctcttctacagcaacatccagaccgtcatcaacaactggctgctcatcgaggggcac
accatcggcatcggggactcgatcgcggacgcgaagacgtaccaggacatccagaacacc
atcaagaaggccaagcaggatgtcatcgaggtgatcgagaaggctcacaacaacgagctg
gagcccacgccagggaacacgctgcggcagaccttcgagaaccaggtgaaccgcatcctc
aacgacgcccgcgacaagacggggtcctccgcccaaaaatccctctccgagtacaacaac
ttcaagtccatggtggtgtcgggcgccaagggctccaagatcaacatctcccaggtcatc
gcggtggtggggcagcagaacgtggagggcaagcgcatccccttcggcttcaagcaccgc
acgctgccccacttcatcaaggacgactacggccccgagagccgcggcttcgtggagaac
tcctacctggccggcctcacgcccaccgagttcttcttccatgccatgggcggccgcgag
gggctcatcgacaccgccgtcaagacggccgagaccgggtacatccagcggcggctgatc
aagtcgatggagtcggtgatggtgaagtacgacgccaccgtgcgcaactccatcaaccag
gtggtgcagctgcgctacggtgaggacgggctggccggggagagcgtcgagttccaaaac
ctcgccaccctcaaaccctccaacaaggccttcgagaaaaagttcaagttcgactacacc
aacgagcgggcgctgcggcgcacgctgcaggaggagctggtcaaggaggtgctgagcaac
gcccacatccagaacgagctcgagcgcgagttcgagaagatgcgggaggaccgcgaggtg
ctgcgcgtcatcttccccacgggggacagcaaggtggtgctcccctgtaacctgctgcgc
atgatctggaacgcccagaagattttccacatcaactcgcgcctgccctcggacctgcac
cccgtcaaggtggtggagggggtgaaggagctgagccgcaagctggtgatcgtcaacggg
gaggaccccctgagccggcaggcgcaggagaacgccacgctgctcttcaacatccacctg
cgcgccaccctctgcagccgccgcatggccgaggagttccacctcagcggggaggccttc
gactggctcctgggggagatcgagtccaagttcaaccaggccatcgcacaccccggggag
atggtgggggcgctggcggcgcagtcgctgggcgagccggccacgcagatgaccctcaac
accttccactacgccggcgtctcggccaaaaacgtgacgctgggcgtgccgcgcctcaag
gagctcatcaacatctccaaaaagcccaaaacgccctcgctcaccgtcttcctgctggga
cagagcgcccgcgacgccgagcgcgccaaggacatcctgtgccgcctggagcacacgacg
ctgcgcaaggtgacggccaacacggccatctactacgaccccatcccgcagagcacggtg
gtggccgaggaccaggagtgggtcaacgtctactacgagatgcccgacttcgacgtcagc
cgcatctcgccctggctgctgcgcgtcgagctcgaccgcaagcacatgacggaccgcaag
ctcaccatggagcagatcgccgagaagatcaacgccggttttggggatgacctgaactgc
atcttcaacgacgacaacgctgagaagctggtgctgcgcatccgcatcatgaacagcgac
gagaacaagatgcaggaggaggaggaggtggtggataagatggacgacgacgtcttcctg
cgctgcatcgagtccaacatgctgaccgacatgacgctgcagggcatcgagcagatcagc
aaggtgtacatgcacctgccgcagacggacaacaagaagcgcatcatcatcacggaggac
ggcgagttcaaggcgctgcaggagtggatcctggagaccgacggcgtcagcctcatgcgg
gtgctgagcgagaaggacgtggaccccgtgcgcaccacctccaacgacatcgtggagatc
ttcaccgggctgggcatcgaggcggtgcgcaaggcgctggagcgggagctgtaccacgtc
atctccttcgacggctcctacgtcaactaccggcacctggcgctgctgtgtgacaccatg
acctcccgcggccacctcatggccatcacccgccacggcgtcaaccgccaggacatcggg
cccctcatgaagtgctccttcgaggagacggtggacgtgctgatggaggcggcggcgcac
ggggagagcgaccccatgaagggggtgtcggagaacatcatgctggggcagctggccccc
gccggcaccggctgcttcgacctcctgctggacgccgaaaaatgcaagcacggcatggag
atccccagcgccatccccgtgctcggcgtcggaggctccaccgggatgttcttcggctcg
gcgcccagccccatgggggccatgtcccccgccatgaccccctggaaccagggagccacc
cccgcctaccgggcctggtcccccagtgtcggaagcggcatgacccccgggggggccggc
ttctcccccagcgccgcctcggacgccagcggcttcagccccggctactcgcccgcctgg
tcgcccaccccggctccccgggctcccccggcccctccagcccctacatcccctccccag
gcggggccatgtcccccagctacagccccacgtcgcccgcctacgagccccgctcgcccg
ggggctacaccccgcagagccccagttacagccccacctcgcccagttacagcccgactt
ctcccagttacagccccaccagccccaactacagccccacatctcccagttacagcccca
cttctcccagttacagccccacctcgcccagctacagcccgacttctcccagctacagcc
ccacctcgcccagttacagccccacttctcccagttacagcccgacctcgcccagctaca
gccccacctcccccagttacagcccgacttctcccagttacagctcgacatcccccagct
acagccccacttctcccagttacagcccgacatcccccagttacagccccacctcgccag
ctacagcccgacttctcccagttacagccccacctctcccagttacagcccaaccagccc
caactacagccccacctcgcccaactacaccccgaccagcccgagttacagcccgacttc
tcccagttacagccccaccagccccaactacaccccgacttcgcccaactacagccccac
atcccccagctacagccccacctctcccagttacagccccaccagccccagtttctcccc
atccagcccccgctacaccccgcagtctcccacctacacccccagcagccccagctacag
ccccagcagccccagttacagccccaccagccccaagtacaccccgaccagccccagcta
cagccccagctcccccgagtacaccccgaccagccccaagtacagccccacatcccccaa
gtacagccccaccacccccaaatacagccccacgtcccccacctacagccccacctcgcc
cgtctacacccccaccagccccaagtacagaccccacgtcccccacctacagcccacctt
cacttcggttctttgatgttcttggggaaaacgattgtaacttcacttttgggaataata
aaggttttagtaatt
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integrated database retrieval system
