Agrilus planipennis (emerald ash borer): 108743166
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Entry
108743166 CDS
T07419
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
apln
Agrilus planipennis (emerald ash borer)
Pathway
apln03020
RNA polymerase
apln03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
apln00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108743166
09124 Replication and repair
03420 Nucleotide excision repair
108743166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apln03021
]
108743166
03400 DNA repair and recombination proteins [BR:
apln03400
]
108743166
Enzymes [BR:
apln01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108743166
Transcription machinery [BR:
apln03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
108743166
DNA repair and recombination proteins [BR:
apln03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
108743166
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
108743166
NCBI-ProteinID:
XP_018334130
UniProt:
A0A1W4XP10
LinkDB
All DBs
Position
Unknown
AA seq
1897 aa
AA seq
DB search
MAVSDSKAPLRYVKRVQFGILSPDEIRRMSVTEGGIRFPETMEAGRPKLGGLMDPRQGVM
DRHSRCQTCAGNMSECPGHFGHLDLAKPVFHIGFITKTIKILRCVCFYCSKLLVSPNNPK
IKEVVMKSKGQPRKRLTFVYDLCKGKNICEGGDEMDVGKEGEDPGKRQGHGGCGRYQPNI
KRVGLDLTAEWKHANEDSQEKKIALSAERVWEILKHITDEECFILGMDPKFARPDWMIVT
VLPVPPLPVRPAVVMYGSARNQDDLTHKLADIIKSNNELQRNEAAGAAAHVINENIKMLQ
FHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP
NLRIDQVGVPRSIAQNLTFPEIVTPFNFDKMLELVQRGNSQYPGAKYIIRDNGERIDLRF
HPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSP
YNADFDGDEMNLHVPQSMETRAEVENLHITPRQIITPQANKPVMGIVQDTLTAIRKMTKR
DVFIEKEQMMNLLMFLPIWDGKMPKPAILKPKPLWTGKQLFSLIIPGNVNMIRTHSTHPD
DEDEGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGN
IQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGN
TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQ
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA
VKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQTLPTVKL
SNTAFERKFRFDPSNERYLRRIFNEDIIRQLMGSGDVISELEREWEQLQKDREALRQIFP
SGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRELLQKCVIVAGEDRLSK
QANENATLLFQCLVRSTLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALA
AQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDA
EKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWL
LRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDGKFGE
GGDEEVDKMDDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQTDSKKRIVITETGEFKA
IAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSVEKEMNAVLQFYG
LYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDP
MRGVSENIILGQLPRMGTGCFDLLLDAEKCKMGIAIPQAHGGDLLSSGMFFGSAATPSMS
PGGGMTPWNQGATPYVGSAWSPQNLMGSGMTPGGPAFSPSAASDASGMSPAYGAWSPTPQ
SPAMSPYIPSPRATSPSYSPSSPAYQPSPSMTPVSPGYSPSSPGYSPTSPNYSPTSPSYS
PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSSPRYSS
TSPSYSPTSPSYSPSSPQYSPASPSYSPSSPKYSPTSPSYSPTSPSFAGGSPQYSPTSPS
YSPTSPSYSPSSPQHTPAASSRYSPSSPNYSPTSPSYSPTSPQYSPNASTKYSPTSPTYT
PTSPSYSPASPAYSPQPPRYSPSSPSYSPTSPDLDQD
NT seq
5694 nt
NT seq
+upstream
nt +downstream
nt
atggctgttagtgatagtaaagctcctttaagatatgtaaaaagggtacaattcggcatc
ctcagccctgatgaaattagacgtatgtctgtcacagaaggtggcatccgctttccagag
accatggaagcgggccgccctaaacttggaggtcttatggatccccggcaaggggtcatg
gatcgacattctcgatgtcagacttgtgcaggaaacatgtcagaatgtccaggacatttt
ggacacttagaccttgcaaaacccgtatttcacataggatttattacaaaaactataaaa
atattgagatgtgtttgtttctactgcagtaaacttcttgttagtcccaataatcccaaa
attaaagaagtagttatgaaatcaaaaggtcagccaagaaaaagattgacttttgtgtac
gatttatgcaaaggaaaaaatatatgtgaaggtggagatgagatggatgtaggaaaagaa
ggagaagatcctggtaaaagacagggtcacggtggttgtggtcggtatcaacctaatatt
aaaagagtaggacttgacttaacagctgaatggaaacatgcaaatgaagattcccaagaa
aaaaaaattgctctttctgcagaaagagtttgggagatcttaaaacatataacagatgaa
gaatgtttcatattgggaatggacccaaaattcgcccgtcctgattggatgatagtaaca
gtacttccagtacctccattgccagtacgtcctgcagttgttatgtatggatctgctaga
aatcaagatgatctcacacataaacttgcagacattattaaatcaaataatgaattgcag
cgtaatgaagcagcaggtgctgcagctcatgtaatcaacgaaaatattaaaatgttacag
tttcacgtggcaactttggttgataatgatatgcctgggatgcccagggcaatgcaaaaa
tcgggaaaacctctgaaggctattaaagcacgtctaaaaggaaaagaaggtcggattcga
ggaaatcttatgggtaaacgtgttgatttttcggcacgaactgttatcactccagatcct
aatcttcgaattgaccaagttggagtgccaagaagcattgcacaaaatcttacatttccc
gaaatagtaacaccttttaattttgataaaatgttagagcttgttcaaagaggtaattct
caatatcctggtgcaaaatacatcatcagagacaatggtgaaagaattgatttaagattt
caccctaaaccctctgatttacaccttcagtgtggatataaggtagagaggcatattcgt
gacggtgatttagttatttttaatcgtcaacctacccttcacaaaatgagtatgatgggg
cacagggttaaagttctaccctggtctacttttcgtatgaatcttagttgcacttcacca
tataatgctgactttgacggtgatgaaatgaatctacatgtgccgcaaagtatggaaaca
agagctgaagtggaaaatttacatattacaccccgtcaaattattaccccacaagcaaac
aagcctgtcatgggtattgtgcaagacactttgacagctattcgtaaaatgacaaaacgt
gacgtatttatcgaaaaagagcagatgatgaaccttctcatgtttttgcccatttgggat
ggaaaaatgccgaaaccagctattctcaaaccaaaaccattgtggactgggaaacagcta
ttttctctaataattccaggaaatgttaacatgatcaggacgcattctacacatccagat
gatgaagacgaaggcccatacaagtggatttctccaggggacacaaaggtaatggtagag
catggtgaactagtaatgggaattttatgtaaaaaaacactgggtacttctgctggatct
ctattacatatttgtatgttagaattgggacatgaagtgtgtggcaggttctatggtaat
atccaaacggtggtaaataactggctattattggaaggtcatagtattggtatcggtgac
accattgctgatccccaaacatatctagaaattcaaaaagcaatcaaaaaagctaaagaa
gatgtcattgaagtaattcagaaagcccacaatatggaattggaacctacgcccggtaat
accctgaggcaaacattcgaaaatcaagtaaacagaatcctaaatgatgctcgagacaaa
actggaggcagtgctaagaaatctttgactgaatacaataatttaaaagccatggtagtc
gcaggatccaaaggttccaatatcaacatttcccaggttattgcttgcgtaggtcaacaa
aatgttgaaggtaaacgtatacctttcggtttccgtaaacgtacgttgcctcatttcatc
aaagacgactatggtcctgaatcaagaggattcgttgaaaactcatatttggccggtctc
actccttccgaattttattttcacgctatgggtggtcgtgaaggtcttattgatactgct
gtaaaaactgccgaaactggatatatccaaagacgtcttataaaagctatggagtcagtt
atggtacactacgacggtaccgtaagaaactctgttggtcaacttatccaattgcgttac
ggagaggacggcctttgtggtgaaatggtcgaatttcagacccttcccacagtaaaatta
agtaacactgctttcgaacgtaaattccgatttgatccaagtaacgagagatatctgagg
cgaatttttaatgaagatataatcagacagttgatgggttctggagacgttatttccgaa
ttggagcgtgaatgggaacaactgcaaaaggaccgcgaagccttgagacaaattttcccc
agtggtgaatcaaaagtggtgttgccctgtaatctacagagaatgatttggaatgtacaa
aagatcttccacattaataagcgagccccgacagatttatcaccactaagagttattcaa
ggcgtgagagaactattgcaaaaatgcgttatagtagccggagaagatagactttccaaa
caagctaacgaaaatgccacgttactattccaatgtcttgtaagatccactttatgtaca
aaatgcgtttccgaagagttccgtcttagcactgaagcttttgaatggttgataggagaa
atcgaaactcgattccaacaggcccaagctaatccaggcgaaatggtcggcgctttggcc
gcacaatctctcggtgaacctgccactcaaatgacactgaacactttccactttgctggt
gtatcttcaaaaaatgtaacgctgggtgtaccacgtcttaaggaaattattaacatctca
aagaaacctaaagctccttcgttgacggtctttctaacaggagctgcagctcgagatgca
gagaaagcaaaaaatgtgttgtgtagactggaacatactacactcagaaaagttacagca
aatacagctatctattacgatcctgacccacaaaataccgtcatccctgaggaccaggaa
ttcgtgaatgtatactatgaaatgcctgattttgatccaactagaatatcaccctggctc
ctacgtattgaacttgacagaaaaagaatgactgataaaaaattgactatggaacagatc
gctgaaaaaattaatgctggttttggtgacgacctaaattgcatttttaacgacgataac
gcagaaaaacttgttttacgaattcgcataatgaatagcgacgacggcaaatttggcgaa
gggggtgatgaagaagttgacaaaatggacgacgatatgttcttacgatgcatcgaagca
aatatgttaagtgacatgactctacagggtattgaagccatttcaaaagtgtatatgcac
ttgccacaaactgacagtaagaaacgtatcgttattactgaaactggagagttcaaggca
attgcagagtggttattggaaactgatggaaccagtctaatgaaagtactatctgagaga
gacgtagaccctgtacgaacattttccaatgacatttgcgaaatattttcggtcctcgga
atagaagctgttcgaaaatctgtagaaaaagaaatgaatgccgtcctacagttctatggt
ttatacgtaaactatcgacacttggctctgctttgcgatgttatgactgcaaaaggtcac
ttgatggctattacacgtcacggtattaatcgacaagacactggtgcacttatgagatgc
tcattcgaagaaacggttgatgtcctgatggacgcggcctctcacgccgaagtcgaccct
atgcgtggtgtatccgaaaatattatcctcggtcaattgccccgcatgggaactgggtgt
ttcgacttattattagatgctgaaaagtgcaaaatgggtatcgcgataccccaagcccat
ggtggagacctcttatcatcgggcatgttcttcggatcagcggccacacctagtatgagt
cctggcggtggtatgacgccttggaaccagggtgcaacgccttacgtcggtagcgcttgg
tcgccacaaaatctaatgggaagtggtatgacacctggaggtcccgcgttttcaccttca
gcagcatccgacgcttcagggatgtcaccagcatatggagcctggtctccgacacctcaa
tcaccggccatgtcaccgtacattccttcgccgcgtgcgacatccccttcatatagtcct
tcaagtccagcatatcaaccgtcgccatcgatgactcccgtttcaccgggttattctcct
agttctccaggatactctcctactagtccaaattatagtccaacaagcccaagctactcg
ccaacgagcccaagttacagtcccacgtccccgagctattcgcctacttcgccaagctat
tcccctacttcgccaagttattcacctacttcgccaagttattcgccaacaagtcccagt
tattcacccacgagtccaagttactcaccgacttctccaagttactcacccacaagcccc
agctattcacctactagcccaagttattcaccaaccagtcctagctacagccctacaagc
ccttcatacagtcccacatctcctagttactccccgaccagtccaagttatagtccaaca
tcacctagttattctcctacgagccccaattattcgccttcgtcacctcgttattcgtct
acttctcccagctattcccccacatctcctagttactccccatcttctccacagtactca
ccagcttcgccgagttactcaccatcatcacctaaatattcacccacgtctccgagttat
tcacctacatctccatctttcgccggaggaagtcctcaatactctcccacttcgcccagt
tactccccgacgtcaccaagttactctccttcgtctccacagcacactcccgcagccagc
tccagatattctccatcctctcctaattattcgccaacctccccatcctattcaccgact
tctcctcagtactctcccaatgcaagtacaaaatattcacctacttcaccgacatacaca
cccacatctccgagttattctcccgcgagtccagcctattcacctcaaccgccaaggtat
tcgccctcgtctccaagttattcaccgacaagtccggacttagaccaagattaa
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integrated database retrieval system
