Arcobacter porcinus: APORC_1633
Help
Entry
APORC_1633 CDS
T06395
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K13797
DNA-directed RNA polymerase subunit beta-beta' [EC:
2.7.7.6
]
Organism
apoc
Arcobacter porcinus
Pathway
apoc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
apoc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
APORC_1633 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apoc03021
]
APORC_1633 (rpoC)
03400 DNA repair and recombination proteins [BR:
apoc03400
]
APORC_1633 (rpoC)
Enzymes [BR:
apoc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
APORC_1633 (rpoC)
Transcription machinery [BR:
apoc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
APORC_1633 (rpoC)
DNA repair and recombination proteins [BR:
apoc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
APORC_1633 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QEP41205
UniProt:
A0A1C0AZ97
LinkDB
All DBs
Position
complement(1567000..1571526)
Genome browser
AA seq
1508 aa
AA seq
DB search
MSNNEKILAPIEIKELERPQDFSAFQLKLASPEKILSWSCGEVKKPETINYRTLKPERDG
LFCAKIFGPVKDYECLCGKYKKMRYKGIVCEKCGVEVTSSKVRRHRMGHIELVSPVAHIW
MVSSLPSRIGTLLGVKLKDLERVLYYEAYIVNEPGEAFYDGERTKKIEKYDILNEEQYRT
VADLFEHTGFEAKMGGEIIRDLLAGLDLFELLTLLKDEMNSTKSEAKRKTIIKRLKVVEN
FINSGNKAEWMMLTQLPVLPPDLRPLVSLDGGKFAVSDVNDLYRRVINRNNRLKRLTELD
APEIIIRNEKRMLQEAVDALFDNGKTANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKR
VDFSGRSVIVVGPELNMDQCGIPKKMALELFKPHLMAKLEEKGYATTLKAAKRLIEAETN
EVWECLSEIVDEYPILLNRAPTLHKLSIQAFHPVLIDGKAIRLHPLVCAAFNADFDGDQM
AVHVPLSQEAVAEAKILMMSSMNILLPASGRAIAVPSQDMILGIYYISLEKEGVQGSHKL
FTDVNEVKIALDMNLIDLHAKIRTKLDNRIIKTTVGRLLIHEILPSFVPMNLWNKVLKKK
DIGALVDYIYKEAGYEVTPRFLDNLKNLGFKYATSAGISISIDDIRVPDSKTLHITKSKK
DVIEVQKQFSQGLLTEQERYNKTIDIWTEANNKLGSEMMELVKSDKDGFNSIYMMADSGA
RGSATQIRQLSGMRGLMAKPDGTIIETPIISNFKEGLNVLEYFISTHGARKGLADTALKT
ANAGYLTRKLIDVSQNVRITDEDCGTHEGIEITDITSGNELIETLEERITGRVIAEDIID
PISNEILFAEGSLITEEFAKIVKESEVKSVIIRTPLTCKSENGLCSKCYGLNLGEQRKAK
PGEAVGVVAAQSIGEPGTQLTLRTFHVGGTASATQTERELKADKEGFIRYYNIKKYDTKD
GKAIVANRRNAGVLLVEPKINAPFKGKVSVETIHDEVILTITNDKDKKQYFLRKSDVAKV
NELAGISGKIEGKLYLPHANGEVVENNDSIVEIIKDGWNIPNRIPFAAELKVEDGAPVTS
KVLSGSKGIVKYYKLTGDHLERKEDIKAGDKVVEKGLFAVVADKEDREAARYYISRGSSI
VLNDNSEVDKGTLISAPTVSEQTVIAEWDPYANPIIAEESGTVTFEDIIPGVTVSEQFDE
LTGTSKLVVNEYIPSGYKPTVLLATANDEIIRYSLDSKASLNIQEGSKVEVADIIAKTPK
ATQKSKDITGGLPRVSELFEARRPKNIAVLASFDGTVTFGKPLRNKQRLIITDATGGQSE
YLVEKGKQILVHEGEFVHAGEALTDGQVSPHDVLRIMGEKALHYFIVSEVQQVYRSQGVN
IADKHIEVITSQMLRQVSILDGGDTKFIMGDMISKKRFKIENEKIVRMGGKPAIAEPLLL
GITRAAVTSDSIISAASFQETTKVLTEAAISAKMDMLEDLKENVVIGRTIPVGTGLYKDK
KIKFSEGE
NT seq
4527 nt
NT seq
+upstream
nt +downstream
nt
atgagcaataatgaaaaaatattagcaccaattgaaattaaagagcttgaaagacctcaa
gatttttcagcatttcaattaaagttagcaagtccagagaaaattttaagctggtcttgt
ggagaagttaaaaaacctgaaacaattaattatagaacattaaaacctgaaagagatgga
ctgttttgtgctaaaatttttggacccgtaaaagattatgagtgtctttgtggtaagtac
aaaaagatgagatataagggaattgtttgtgagaaatgtggagttgaagtaacttcaagt
aaagtaagaagacatagaatggggcatattgagttagtttctcctgttgctcatatttgg
atggtatcttcacttccttcaagaataggaacacttttaggtgttaaattaaaagattta
gaaagagttctttattatgaagcatatattgtaaatgagccaggagaggctttttatgat
ggtgaaagaactaaaaaaattgaaaaatatgatattttaaatgaagagcaatatagaaca
gtagcagatctatttgaacacactggttttgaagctaaaatgggtggagaaattataaga
gatctacttgctggacttgatttatttgaacttttaacactattaaaagatgagatgaat
tcaacaaaatctgaagcaaaaagaaaaactataattaaaagattaaaagttgtagaaaac
tttataaatagtggaaataaagctgagtggatgatgcttactcaacttccagttcttcca
cctgatttaagaccacttgtttcacttgatggtggaaaatttgctgtttcagacgtaaat
gacctttatagaagagttataaatagaaataacagattaaaaagattaactgaacttgat
gctcctgaaattattattagaaatgagaaaagaatgcttcaagaggctgttgatgctctt
tttgataatggtaaaacagcaaatgctgttaaaggtgcaaataaaagacctcttaaatct
ttaagtgaaatcattaaaggtaaacaaggaagatttagacaaaacttacttggaaaaagg
gttgacttctctggaagatctgttattgttgttggacctgaattaaatatggatcaatgt
ggtattcctaaaaaaatggcacttgaactatttaaaccacatttaatggcaaaactagaa
gaaaaaggttatgcaactactttaaaagctgcaaaaagattgattgaagctgagacaaat
gaagtttgggaatgtttaagtgagattgttgatgaatatccaattttattaaatagagca
ccaactcttcataaattatcaattcaagcattccaccctgttttaattgatgggaaagct
attagactacatccacttgtttgtgctgcatttaatgctgacttcgatggtgaccaaatg
gctgttcacgtaccattatcacaagaggctgttgctgaagcaaaaattttaatgatgagt
tcaatgaacatattattaccagcttcaggtagagctattgctgttccatcacaagatatg
attttaggtatctattatatatctttagaaaaagagggtgtacaaggttctcataaatta
tttacagatgttaatgaagttaaaattgcattagatatgaatttaattgatcttcatgca
aaaattagaacaaaactagataatagaattataaaaacaactgttggaagacttttaatt
catgaaatcttaccatcttttgtaccaatgaatttatggaataaagttttaaagaaaaaa
gatataggtgctctagttgattatatttataaagaagctggatatgaagtaacaccaaga
ttcttggataacttaaaaaatcttggatttaaatatgcaacttctgctggaatttctata
tcaattgatgatattagagttcctgatagtaaaacattacatattacaaaatctaaaaaa
gatgttattgaagttcaaaaacagttctctcaaggactattaacagaacaagaaagatac
aataaaactattgatatctggacagaagctaacaataaattaggttctgagatgatggaa
cttgttaaaagtgataaagatgggtttaactcaatctatatgatggcagattcaggagca
agaggtagtgcaacacaaattagacagctttcaggaatgagaggtcttatggcaaaacct
gatggaactattattgaaacaccaattatctctaactttaaagagggactaaatgtactt
gagtactttatttctactcacggagctagaaaaggtcttgcagatacagctttaaaaaca
gcaaatgctggatatttaacaagaaagctgattgacgtttctcaaaatgttagaattact
gatgaagattgtggaactcacgaaggaatagagattacagatataacatctggaaatgag
ctaattgaaactttagaagagagaatcacaggtagagttattgctgaagatataattgac
ccaatttcgaatgagatcttatttgctgaaggaagtttaataactgaagagtttgcaaaa
attgtaaaagagtctgaagttaagtcggtaattattagaacaccattgacttgtaaaagt
gaaaatggtttatgttcaaaatgttatggattaaaccttggtgagcaaagaaaagcaaaa
ccaggagaagctgttggagttgttgctgcacaatctattggagagccaggaactcagctt
acacttagaactttccacgttggaggaacagcaagtgctactcaaactgaaagagaatta
aaagcagataaagaagggtttattagatattataatatcaaaaaatatgatacaaaagat
ggaaaagctattgtagctaatagaagaaatgctggagtattactagttgaaccaaaaata
aatgcaccatttaaaggaaaagtttcagttgaaactatccatgatgaagttattttaact
attacaaatgataaagataaaaaacaatatttcttaagaaaaagtgatgttgcaaaagta
aatgaacttgcaggaatttctggaaaaattgaaggaaaactttatttaccacatgcaaat
ggtgaagtagtagaaaacaatgactctattgttgaaataattaaagatggatggaatatt
ccaaatagaattccatttgcagctgagttaaaagttgaagatggagctcctgttacatca
aaagttctttctggttcaaaaggaattgttaaatattataaattaacaggtgatcattta
gaaagaaaagaagatataaaagctggtgataaagttgtagaaaaaggtctttttgctgtt
gttgcagataaagaagatagagaagctgcaagatattatatttcaagaggttcttctatt
gtattaaatgataatagtgaagtagataaaggaactttaatatctgctccaactgtttct
gagcaaactgttattgcagagtgggatccatatgcaaatcctattattgcagaagaatca
ggaacagtgacttttgaagatattattccaggagtaacagtttctgagcaatttgatgaa
ttaacaggaacttcaaaactagttgtaaatgagtatattccaagtggatataaaccaaca
gttttattggcaacagcaaatgatgaaattataagatattcattagattctaaagcttct
ttaaatattcaagaaggaagtaaagttgaagttgcagatattattgcaaaaacacctaaa
gcaactcaaaaatctaaggatattacgggaggtcttccaagagtttctgaactatttgaa
gctagacgtccaaaaaacatagcagttttagcatcatttgatggaactgtaacatttgga
aaaccacttagaaataaacaaagattgataattactgatgcaacaggtgggcaaagtgaa
tatttagttgagaaagggaaacaaatattagtacatgaaggtgagtttgttcatgctgga
gaagcattaacagatgggcaagtttctcctcatgatgtattaagaattatgggtgaaaaa
gctcttcactactttattgtttctgaagttcaacaagtttatagatctcaaggggttaat
attgctgataaacatattgaggtaattacatctcaaatgttaagacaagtttcaattctt
gatggtggagatacaaaattcatcatgggagatatgatttctaaaaagagattcaaaatt
gaaaatgagaaaatagtaagaatgggtggaaaaccagctattgctgaacctttacttctt
ggaattacaagagctgcagttacaagtgatagtattatttcagctgcatctttccaagag
actacaaaagttttaacagaagcggcaattagtgcaaaaatggatatgcttgaagattta
aaagagaatgttgtaataggaagaacaattcctgtaggaacaggtctttataaagacaaa
aaaatcaaattctctgaaggagagtag
DBGET
integrated database retrieval system
