Amphimedon queenslandica (sponge): 100636102
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Entry
100636102 CDS
T02284
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
aqu
Amphimedon queenslandica (sponge)
Pathway
aqu03020
RNA polymerase
aqu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aqu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100636102
09124 Replication and repair
03420 Nucleotide excision repair
100636102
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aqu03021
]
100636102
03400 DNA repair and recombination proteins [BR:
aqu03400
]
100636102
Enzymes [BR:
aqu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
100636102
Transcription machinery [BR:
aqu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
100636102
DNA repair and recombination proteins [BR:
aqu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
100636102
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
100636102
NCBI-ProteinID:
XP_019850381
UniProt:
A0A1X7VVZ9
LinkDB
All DBs
Position
Unknown
AA seq
1933 aa
AA seq
DB search
MATTLDSSAPLKRVKKVQFGILSAEEIKRRSVTVPDGIRYPYTMEGGKPKMGGLMDPRQG
VIDRASRCQTCAGNMNTCPGHFGHISLTKPVFHVCFMTKIVKIMRCVCFYCSRLLIDSDD
PKVKDILLKTRTVPHKRLQYIYTLARVKRICDGGGGGAEDKNTTMMDDPKMMARGGCGRY
QPKLRKIGLEITAEWKEINEESQERKIVVSAERVLEIFKNMSDDDCRIIGIDPNYSRPDS
MIITVLPVPPLPVRPAVVMHGSARNQDDLTHKLSDIVKANEQLIKNEQNGAASHIIEEDL
KMLQFHVATLKDNELPGMPKAVQRGGRPLKSIKQRLKSKEGRIRGNLMGKRVDFSARAVI
TPDPNLSIDQVGVPRTIAQNLTFPEVVTPFNIDRMQELVARGHNQYPGAKYIIRENGERI
DLRYHPKPSDLHLQYGYKIERHIVDDDLIVFNRQPTLHKMSMMGHRVKILPWSTFRLNLS
VTTPYNADFDGDEMNLHVPQSLETKAEIQELMMVHRNILTPQSNRPVMGIVQDSLTAATK
FTKRDVFLEKESMMNLLMWLPSWDGKMPVPAILKPKPLWTGKQLFSLIIPGTNVNVIRTH
STHPDDEDNGPYKWISPGDTKVLVEHGQLLSGILSKDTLGNKGGSLMHVVAMELGPDIAR
NFYGNIQTVVNNFLMLEGHSIGIGDTIADNLTYNDIQKTIRSAKNDVVEVIKKAHNNELE
PTPGNTLRQTFENQVNRILNEARDKTGSSAQRSLSEFNNFKIMVTAGSKGSKINISQVIA
CVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPNEFFFHAMGGREG
LIDTAVKTSETGYIQRRLMKAMEGLMAHYDGTIRNSNSQMIQLCYGEDGMDGMWMEFQQL
PTIKPSDAAFKRKFYFDVTNQRQLRQFFRDELIRDLMKSGTLQKELEDEFQQLKEDRAAL
RSIFPTGNSKVALPVNITRLIWNAQKIFHIDTRSKVDLHPSKVIEGVKELNDKLVVVKGD
DALSRQAQINATLLFSIFLRSTLCTKRMAEEHKLTEEAFEWLLGEIETRFQRAHVQPGEM
VGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTIFLLGQ
AARDAEKCKDVLCRIEHTTLSKVTANTSIFYDPDPQNTVIAEDQEFVNVYYEMPDFDPAL
ISPWLLRLELDRKRMTDKKLTMEQIAEKISSTFGDDLRCLFNDDNAEKLVLRIRLMNSDD
QKYQSEADEEQLDKMEDETFLRCLEANLLSDMTLQGIEQISKVYMHYPTQDSKKRIVISE
QGEFKAIQEWILETDGVNLLRVLSEPSVDPVRTTSNHIVEIFQVLGIEAVRKALEKEINH
VISFDGSYVNYRHLALLCDIMTCRGHLMAVTRHGVNRQEVGALMRCSFEETVDILMEAAG
HAEVDKMQGVSECIMLGQLPKGGTGAFELMLDAEKCKSAMEISGTMTGMMIPGLMFERGS
GPVGSQTPAMTPWQGGATPSYMDAWTPGGMTPGMSAAFSPAAQSEVGGFSPGYSPGWSPG
PSSPSYNPPAGYSPASPGYSPASPGGPASPKYSPASPGYSPASPSYSPASPSYSPASPSY
SPASPSYSPASPSYSPASPSYSPASPSYSPASPSYSPASPSYSPASPSYSPTSPSYSPSS
PSYSPSSPSYSPSSPSYSPSSPSYSPSSPSYSPSSPSYSPSSPSYSPSSPSYSPSSPSYS
PSSPSYSPSSPSYSPSSPSYSPSSPSYSPSSPSYSPSSPSYSPSSPSYSPSSPSYSPSSP
AYSGSKQKYYSSNQKYSPSSPKYSPSSPKYSPSSPKYSPTSPPYTPSSPQYTPSSPQYTP
SSPQYTPSSPQYSPSSPQYSPSSPQYSPSSPQYTPSSPQYTPSSPQYTPSSPQYTPSSPQ
YTPSSPQYSPPSP
NT seq
5802 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaccctagactcctcggcgccactgaaaagagtgaagaaagttcaatttggg
atcctttcagcagaagaaataaaacgtagatcggtgacagtccctgatggaatcagatac
ccttacacgatggagggagggaagcctaaaatgggaggactgatggacccgaggcaaggc
gtcattgacagggcgtcacgctgtcagacttgtgccggtaacatgaacacatgtcccggt
cactttggacacattagtctcactaagcctgtcttccatgtttgcttcatgacaaagata
gtgaagataatgcgctgtgtctgtttctactgctcacgtctgctcattgactctgatgac
ccaaaagtgaaagacatattattgaagactaggacagtccctcataaacgtctccagtat
atttatacactggcaagagtgaagaggatctgtgatggaggaggaggaggagctgaagac
aagaacactactatgatggatgatcctaaaatgatggctcgtggtgggtgtggtcgttat
caaccgaaactccgaaagataggcttagagataacggcagaatggaaggagataaatgag
gagtcgcaggaaaggaagatagtagtgtcagctgagagggtccttgaaatattcaagaat
atgtccgatgatgactgtcgtatcataggaattgatcctaattattctcgtcctgattca
atgataatcacagtgctaccggtaccgccactacctgtacgacctgctgttgtgatgcat
ggatcagcaaggaaccaggatgatctgactcataagttgtccgatattgtcaaagctaat
gagcagcttatcaagaatgagcaaaacggagcagcttcgcacatcatcgaggaagacttg
aagatgctccagtttcatgtagcaacactcaaggacaatgaattaccaggaatgcctaaa
gctgttcaaagaggagggagaccgttgaaatcgatcaagcagaggctgaagagcaaggag
ggacgtattcgtgggaacctcatggggaaacgtgttgatttctcagcacgtgccgtcatc
actcctgacccaaacctctccattgatcaggttggagtaccgcgtaccatagcacagaac
cttaccttccctgaagtagtgacaccattcaacatagacagaatgcaggagcttgtggca
cgtggtcacaatcagtatccaggggctaagtacatcatacgtgagaacggggagaggatt
gaccttcgttatcatcccaaaccaagcgacctccatttgcagtatggctacaaaattgag
agacacattgtagatgatgatttgattgttttcaatcgtcagccgacgctacacaagatg
tctatgatgggccacagggtcaagatattaccatggtccacctttagactcaatttgagt
gttaccactccatataatgctgattttgatggtgatgagatgaatcttcacgtaccccag
agtctagagacaaaggcagagatacaggaactgatgatggttcaccgtaacatcctcacc
cctcaatcaaacaggccagtgatgggtattgtacaggactcactcactgctgctacaaaa
ttcaccaaaagagacgtgttcctagaaaaggaatcaatgatgaatttattaatgtggctc
ccttcctgggacggtaagatgcctgtccccgccatattgaaaccaaagcccctgtggaca
gggaagcagttgttttcattgataataccagggaccaacgtgaacgtgatcagaacacac
tccactcatcctgacgatgaggacaatgggccatacaaatggatatcacctggagacacc
aaggtgttggttgaacacggtcagcttctctctggtatcttatccaaagacactcttggt
aataaaggtggctcactcatgcatgtcgtagcaatggagcttggccctgatattgctcgt
aacttttatggtaacatccagactgtcgtcaataacttcctaatgctcgagggacatagc
attggtattggtgacaccattgctgataatctcacgtataatgatatacagaaaaccatt
agatctgccaagaatgatgttgttgaagttatcaagaaggctcacaataacgagcttgag
ccaacgccaggcaacactcttcgtcagacctttgagaaccaggtgaacaggatactcaac
gaggcacgtgacaagacaggtagctccgcccagaggagtctctctgaatttaataatttc
aagataatggtcacagctgggtcgaaaggatcaaagattaacatatcacaggtcatagct
tgcgtgggacagcagaacgttgaaggaaagagaatcccgtttggttttcgacacaggacg
ctacctcatttcattaaggatgattatggacccgagagcaaagggtttgtagagaactct
tacttagccggtctcactcctaacgagttcttctttcacgctatgggaggaagagaagga
ctcatagatactgctgtgaaaacatctgaaacaggttacatacagagacgattgatgaaa
gctatggaaggtctgatggcacattatgatggaactatcaggaactcaaactctcaaatg
attcagctttgctatggagaggacggcatggatgggatgtggatggagttccaacagttg
ccaactataaaaccatcagatgctgcgtttaaaaggaaattttactttgatgtgacaaac
caaagacaactgaggcagttctttagagatgagctcattagggatctaatgaagtcaggt
actctccagaaggaattggaggacgagtttcagcagctgaaagaagacagggcagctcta
agatcaatattccctactggcaacagcaaagttgcattacctgttaatattacaagactc
atctggaatgcacagaagatatttcacattgacactcgcagtaaagttgaccttcatcct
tcgaaagttattgaaggtgtcaaggagttaaatgataagttggttgttgttaaaggagat
gatgctctatcaagacaggcacagatcaatgctacactcctcttctccatattcctcaga
tccaccctctgcactaagagaatggcagaggagcacaaactcacagaggaagcttttgaa
tggctccttggagagattgagaccagattccagagagcacacgttcagccaggagagatg
gtaggagcacttgccgctcagtcactaggagaacctgccactcaaatgacactgaacaca
tttcattatgctggagtctctgctaagaacgtaactctgggggtacctcgtcttaaggaa
atcattaacgtgtccaagaagccgaaaaccccatcactgactatctttttattaggacaa
gcggcacgtgatgctgaaaaatgcaaggatgttctgtgtcgtatagagcacacgactctt
agtaaagtgactgcaaacacgtccatattttatgatccagacccacagaacacggtgatt
gccgaagatcaggagtttgttaatgtttactatgaaatgcctgattttgatcctgcgctc
atatcaccttggctcctgcgtcttgaattggatcgtaaaaggatgacagacaagaagttg
accatggaacaaattgcagagaaaatcagctccacttttggtgatgatctccgttgtctt
ttcaatgatgataatgcagagaagctagtccttcgcatcagactaatgaacagcgatgat
cagaaatatcaatcagaggctgatgaggagcagttggataaaatggaggatgagacattc
ttgcgttgccttgaagctaatctgctgtcagacatgacacttcaaggaatcgagcaaata
tctaaagtgtacatgcactatcctactcaagactcaaagaagcgtattgttatcagtgag
caaggtgaattcaaggctatacaggagtggatacttgagactgatggggtcaatctcctc
cgggttttgagtgagccctccgttgatcctgttcgtacaacatccaatcacattgtggaa
atatttcaggtgcttggtattgaggcggtaaggaaagcattagagaaagagattaatcat
gtcatttcttttgatggttcttacgttaattatcgtcacttggctttgctctgcgatatt
atgacgtgccgtggtcatttaatggcagtcactagacacggggtgaacagacaagaagta
ggagcactgatgagatgctcatttgaagaaactgttgatatattgatggaggctgctggt
catgcagaggttgataagatgcaaggagttagtgagtgtatcatgttgggccagttgcct
aaaggtggtactggtgcttttgaactgatgcttgatgcagagaagtgcaagtcggcaatg
gagatatcaggaacaatgaccgggatgatgatacctggtttgatgtttgaacgtggatct
ggcccagttggtagtcagaccccagccatgacgccatggcagggaggtgctacccctagc
tatatggatgcatggactcctggtggaatgactccaggaatgtctgctgcattctctcca
gcagcacaatcagaggttggtgggtttagtcctggatatagtcctggttggagtcctggt
ccatcttctccatcatataatcccccagcaggttattctcctgcttctcctggttattcc
cctgcttctcctggtggccctgcttctccaaagtattcaccagcatcaccaggttattca
ccagcaagtccttcgtattcaccagctagcccatcctattcaccggctagtccatcctat
tctcctgctagcccctcttattcaccagcaagtccatcttattcaccagcgagtccatct
tattctcctgctagcccttcctattcaccagccagcccttcctattctccagcaagtcca
tcttattcaccagcctctcccagctacagtccaacttcaccaagttatagcccatcttct
ccaagctatagcccttcttcccccagctatagtccatcatcaccaagctatagcccttct
tccccgagctatagcccgtcatctcctagctatagcccatcctctcccagctacagtcca
tcttccccgagctatagcccatcttcacccagctatagtccatcttcgcccagctatagc
ccatcatcgcctagctatagtccttcttccccgagctatagcccttcatcaccaagttat
agtccatcttctcccagttatagcccatcctctcccagctatagcccatcctcccccagc
tatagcccatcttccccaagctatagcccttcatctcccagctacagtccatcgagtcct
gcttattctggatcaaagcaaaaatattattcgtcaaatcaaaagtattcgccatcaagc
ccaaagtattcaccatcaagcccaaagtattcgccttcgagcccaaaatattcgcctact
tcgccaccatatacaccatcctcacctcagtatactcctagttcacctcagtatactcca
agctcgcctcagtatactccaagctcgcctcagtactccccaagctctccccagtattct
cccagttccccccagtactctcccagttcacctcagtataccccgagctcacctcagtat
actcctagttcacctcagtatactcctagttcacctcagtatactccgagttcgcctcag
tatactccaagctctcctcaatattcgccaccttcaccttaa
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integrated database retrieval system
