Aliarcobacter skirrowii: EI285_02330
Help
Entry
EI285_02330 CDS
T05743
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K13797
DNA-directed RNA polymerase subunit beta-beta' [EC:
2.7.7.6
]
Organism
ask
Aliarcobacter skirrowii
Pathway
ask03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ask00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EI285_02330 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ask03021
]
EI285_02330 (rpoC)
03400 DNA repair and recombination proteins [BR:
ask03400
]
EI285_02330 (rpoC)
Enzymes [BR:
ask01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EI285_02330 (rpoC)
Transcription machinery [BR:
ask03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EI285_02330 (rpoC)
DNA repair and recombination proteins [BR:
ask03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EI285_02330 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AZL53464
LinkDB
All DBs
Position
437694..442220
Genome browser
AA seq
1508 aa
AA seq
DB search
MSNNEKVLSPIDIKELERPQDFSAFQLKLASPEKILSWSCGEVKKPETINYRTLKPERDG
LFCAKIFGPVKDYECLCGKYKKMRYKGVVCEKCGVEVTSSKVRRHRMGHIELVSPVAHIW
MVSSLPSRIGTLLGVKLKDLERVLYYEAYIVNSAGEAFYDGERTKKIEKYDILNEEQYRT
VADLFEHTGFEAKMGGEIIRDLLAELDLFELLTLLKDEMQTTKSDAKRKTIIKRLKVVEN
FINSGNRPEWMMLTMLPVLPPDLRPLVSLDGGKFAVSDVNDLYRRVINRNNRLKRLTELD
APEIIIRNEKRMLQEAVDALFDNGKTANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKR
VDFSGRSVIVVGPNLNMDQCGIPKKMALELFKPHLMAKLEEKGYATTLKAAKRLIESETN
EVWECLNEIVDEYPILLNRAPTLHKLSIQAFHPVLIDGKAIRLHPLVCAAFNADFDGDQM
AVHVPLSQEAVAEAKILMMSSMNILLPASGRAIAVPSQDMILGIYYLSLEKEGVKGSHKL
FTDVNEVKIALDMNQIDLHAKIRTKIDGKIVKTTVGRLIIHEILPSFVPMSLWNKVLKKK
DIGALVDYIYKEAGYEVTPRFLDNLKNLGFKYATTAGISISIDDIIVPDSKVSHITKSKK
DVIEVQKQFSQGLLTEQERYNKTIDIWTEANNKLGLEMMDLVKADKDGFNSIYMMADSGA
RGSATQIRQLSGMRGLMAKPDGSIIETPIISNFKEGLNVLEYFISTHGARKGLADTALKT
ANAGYLTRKLIDVSQNVRITEEDCGTHEGIEITDITSGNELIESLDERITGRVIAEDIID
PISNEILFNEGTLITEEFAKIVKESEVKSVIIRTPLTCKTENGLCSKCYGLNLGEQRKAK
PGEAVGVVAAQSIGEPGTQLTLRTFHVGGTASATQTERELKADKEGFIRYYNIKKYETKN
GKTIVANRRNAGILLVEPKINAPFKGKVAVETIHDEVVVTISNSKEKKSYYLRKSDVAKV
NELAGISGKIEGKLYIPHANGQEVDNNDSIVEIIKDGWNVPNRIPFAAELKVEDGAPITS
KVVSAAKGIVKYYKLIGDYLERRHDIKSGDKVVEKGLFAVVADKEDREAARYYISRGSSI
ILNDNSEVEKGTQISSPTVSEQTVIAEWDPYANPIIAEESGVVTFEDIIPGVTVSEQFDE
LTGTSKLVVNEYIPSGYKPTVLLATASGEIIRYVLESKASLNIQEGSKVEVADIIAKTPK
ATQKSKDITGGLPRVSELFEARRPKSIAVLASFDGTVTFGKPLRNKQRLIISDIMGGQTE
YLIEKGKQILVHEGEFVHAGEALTDGQVSPHDVLRIMGEKALHYFIVSEVQQVYRSQGVN
IADKHIEVILSQMLRQVSILDGGDTKFIVGDMISKKRFKIENEKIVRMGGRPAIAEPLLL
GITRAAVTSDSIISAASFQETTKVLTEAAISAKMDMLEDLKENVVIGRTIPVGTGLYKDQ
KVKFTEVE
NT seq
4527 nt
NT seq
+upstream
nt +downstream
nt
atgagtaataatgaaaaagtgttatcaccaatagatataaaagagttagaaagaccacaa
gatttttctgcttttcaattaaagttagcaagtccagagaaaattctatcttggtcttgt
ggagaggttaaaaaacctgaaactattaactatagaacactaaaaccagagagagatgga
ctgttttgtgcaaaaatctttggacctgtaaaagattatgagtgtctatgtggtaaatat
aaaaagatgagatacaaaggtgttgtttgtgaaaaatgtggagttgaagtaacttcatca
aaagttagaagacacagaatgggacatattgaattagtatctcctgttgctcatatttgg
atggtatcatctcttccttcaagaattggaacacttttaggtgttaaattaaaagattta
gaaagagttctatattatgaagcatacattgtaaatagtgctggtgaagcattttatgat
ggtgaaagaactaaaaaaattgaaaaatatgatattttaaatgaagagcaatatagaact
gttgcagatctatttgaacatactggttttgaagcaaaaatgggtggagagattattaga
gatcttttggctgagcttgatctgtttgagctattaactttattaaaagatgagatgcaa
acaactaaatcagatgcaaaaagaaaaacaataatcaaaagattaaaagttgttgaaaac
tttataaatagtggaaatagacctgagtggatgatgcttacaatgcttccagttttacca
ccagatttaagaccacttgtttcacttgatggtggaaaatttgctgtttcagacgttaat
gacctttatagaagagtaattaatagaaataacagattaaaaagattaacagaacttgat
gctcctgaaattattattagaaatgaaaaaagaatgcttcaagaagctgttgatgcttta
tttgataatggtaaaacagcaaatgctgttaaaggtgcaaataaaagacctttaaaatct
ttaagtgagattatcaaaggaaaacaaggacgattcagacaaaacttacttggaaaaagg
gttgacttctcaggaagatctgttattgttgttggaccaaatttaaatatggatcaatgt
ggtattccaaagaaaatggcacttgaactatttaaaccacatttaatggcaaaattagag
gaaaaaggttacgcaacaactttaaaagctgcaaaaagattaattgaatctgaaacaaat
gaagtttgggaatgtttaaatgagatagttgatgagtatccaattttattaaatagagct
ccaacgcttcataaattatctattcaagctttccaccctgttttaattgatggaaaagct
attagattacatccgcttgtttgtgctgcatttaatgctgacttcgatggggatcaaatg
gctgttcacgtaccactttctcaagaggcggttgctgaagctaagattttaatgatgagc
tcaatgaatattttattaccagcaagtggtagagcaattgcagttccatctcaagatatg
attttaggtatatattatctatcattagagaaagagggtgtaaaaggttctcataagcta
tttactgatgtaaatgaggtaaaaattgcattagatatgaatcaaattgatttacatgca
aaaattagaacaaaaattgatggaaaaattgtaaaaacaacagttggaagattaataatt
cacgaaattctaccatcttttgttccaatgagtttatggaataaagttttaaagaaaaaa
gatatcggtgcattagtagattatatctataaagaggctggttatgaagtaactccaaga
ttcttagacaacttaaaaaatctaggatttaagtatgcaactactgctggtatttcaata
tcaattgatgatattattgttccagatagtaaagtttctcatattacaaaatctaaaaaa
gatgttattgaggtacaaaaacagttctctcaaggtttattaactgagcaagagagatat
aataaaactattgatatctggactgaagctaataataaacttggacttgagatgatggat
ttagttaaagcagataaagatgggtttaactctatttatatgatggcagattcaggagca
agaggtagtgcaactcaaattagacagctttcaggtatgaggggtcttatggctaaacct
gatggaagtattattgaaacaccaattatctctaactttaaagagggtcttaacgttctt
gagtattttatctctactcacggagctagaaaaggacttgcggatacagctttaaaaaca
gcaaatgctggatatttaacaagaaagcttattgacgtttctcaaaatgtaagaattaca
gaagaggattgcggaactcatgaaggtattgaaattactgatattacatctggaaatgag
ttaatcgagtctttagatgagagaattacaggaagagttattgctgaagatattattgat
ccaatctctaatgagattttatttaatgaaggaactttaataactgaagagtttgcaaaa
atagtaaaagagtctgaggttaaatctgtaattattagaactccgcttacttgtaaaaca
gaaaatggactttgttcaaaatgttatggactaaaccttggtgagcaaagaaaagcaaaa
ccaggtgaagctgttggagttgttgctgctcaatcaattggagagccaggaactcagcta
acacttagaactttccacgttggaggaactgcaagtgctactcaaactgaaagagagtta
aaagctgataaagaaggtttcattagatactacaatatcaaaaaatatgaaacaaaaaat
ggaaaaactattgttgcaaatagaagaaatgctggaattttattagttgaaccaaaaatt
aatgcaccatttaaaggtaaagttgcagttgaaactattcatgatgaagtagttgtaact
atttcaaatagtaaagagaaaaaatcttactatttaagaaaaagtgatgttgcaaaagta
aatgagcttgcaggaatttctggaaaaattgaaggaaaactttatattcctcatgcaaat
ggtcaagaagtagataataacgactctatagttgaaattattaaagatggatggaatgta
ccaaatagaatcccatttgcagctgaattaaaagttgaagatggagcaccaattacatct
aaagttgtttcagcagctaaaggtattgttaaatattataaattaataggtgactattta
gagagaagacatgatattaaatctggtgataaagttgtagaaaaaggtctttttgcagta
gttgcagataaagaagatagagaagctgcaagatactatatctcaagaggttcatcaata
attttaaatgataatagtgaagttgaaaaaggtactcaaatttcttcaccaacagtttct
gaacaaactgttatagctgagtgggatccatatgctaacccaattattgctgaagagtct
ggagttgtaacttttgaagacattattccaggtgttactgtttcagaacaatttgatgag
ttaacaggaacatctaagctagttgttaatgagtatattccaagtggatataaaccaaca
gtattattagcaacagcttcaggtgagattattagatatgtactagagtcaaaagcatct
ttaaatattcaagagggaagcaaagtagaggttgcagatattattgctaaaactccaaag
gctacacaaaaatcaaaagatattactggaggtcttccaagagtatctgagttatttgaa
gcaagacgaccaaaaagtatagctgtattagcttcatttgatggaactgtaacttttgga
aaaccactaagaaataaacaaagattaataatctctgatattatgggtggacaaacagag
tacttaattgaaaaaggaaaacaaatccttgttcatgaaggtgaatttgtacacgctggt
gaagcattaacggatggtcaagtatcgcctcatgatgtattaagaattatgggtgaaaaa
gcacttcattactttattgtatctgaagtacaacaagtttatagatctcaaggggttaat
attgcagataaacatattgaggtaattttatctcaaatgttaagacaagtatcaattctt
gatggtggagatactaaatttattgttggtgatatgatctctaaaaagagatttaaaatt
gagaatgaaaaaattgtaagaatgggtggaagaccagctattgctgagcctttattgctt
ggtattacaagagctgctgttacaagtgatagtatcatttcagctgcatcattccaagag
acaacaaaagtattaacagaagctgcaattagtgcaaaaatggatatgcttgaagatctt
aaagagaatgttgtaataggaagaacaattcctgttggaacaggtctatataaagatcaa
aaagtaaaattcacagaagttgagtaa
DBGET
integrated database retrieval system
