Anopheles stephensi (Asian malaria mosquito): 118513996
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Entry
118513996 CDS
T08252
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
aste
Anopheles stephensi (Asian malaria mosquito)
Pathway
aste03020
RNA polymerase
aste03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aste00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
118513996
09124 Replication and repair
03420 Nucleotide excision repair
118513996
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aste03021
]
118513996
03400 DNA repair and recombination proteins [BR:
aste03400
]
118513996
Enzymes [BR:
aste01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
118513996
Transcription machinery [BR:
aste03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
118513996
DNA repair and recombination proteins [BR:
aste03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
118513996
BRITE hierarchy
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF3137
Motif
Other DBs
NCBI-GeneID:
118513996
NCBI-ProteinID:
XP_035916319
LinkDB
All DBs
Position
3:complement(86843018..86849719)
Genome browser
AA seq
1877 aa
AA seq
DB search
MSGDSKAPLRTVKRVQFGILSPDEIRRMSVTEGGIQYAETMEGGRPKLCGLMDPRQGVIE
RTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPQNPKI
KEIVLKSKGQPRKRLAYVYDLCKGKKICEGGEDMDMSKEPTPEGTKKQGHGGCGHYQPSI
RRTGLDLMAEWKDVNDENQEKKIQVSAERVYEILKHITDEECFVLGMDPKFARPDWMIIT
VLPVPPLAVRPAVVMFGATKNQDDLTHKLSDIIKANNELKKNEATGAAAHVIAENIKMLQ
FHVATLVDNDMPGMPKAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP
NLRIDQVGVPRSVAQNMTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDLRF
HPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSP
YNADFDGDEMNLHVPQSMETRAEIENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKR
DVFIEKEQMMNLLMFLPTWDGKMPQPCILKPKPLWTGKQIFTLIIPGNVNMIRTHSTHPD
EEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHIVFLELGHEIAGRFYGN
IQTVVNNWLLLEGHSIGIGDTIADPQTYAEIQRAIKKAKEDVIGVIQKAHNMELEPTPGN
TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLIDTA
VKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKL
SNKVFEKRYRFDPTNERTLRRIFNEDVIKELTESSSVIQEIEAEYEQLLRDREALRQIFP
NGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPLKVIQGVRDLLQRCVIVAGTDRLSK
QANENATLLFQCLVRSTLCTKYVAEEFRLNNEAFEWLIGEIETRFQQAQVNPGEMVGALA
AQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPSLTVFLTGGAARDA
EKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFDPTRISPWL
LRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNADKLVLRIRIMNEDNKFQES
EEENMDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAKKRIVITPEGEFKPI
GEWLLETDGTSMMKVLSERDVDPVRTYSNDICEIFSVLGIEAVRKSVEKEMNNVLQFYGL
YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLNDAAAHAEVDPM
RGVSENIILGQLPRMGTGCFDLLLDAEKCKLGMEIPHTSILGGTGMFFGSAATPSMTPWQ
QSATPGYGGWSPSGPASGMTPGGPSFSPSAQSDASGMSPSSWSPIRGSPSSPGPSMSPYP
PSSPSMSPSYSPSSPGYAPNSPGGASPSYSPTSPCYSPPSPQYSPGSSNYSPSSPNIHSA
TQNYSPTSPSYSPMSPMHPTSTSNFASPGYSPTSPLYSPTSPSYSPSSPVFSPTSPSYSP
SSPSYSPTSPSYSPTSPSYSPTSPNFTPVTPSYSPSSPNYSPTSPHYSPASPSYSPSSPK
YSPTSPSYSPTSPSYIGSPHYTPASPQYGQASPNYSPTSPSYSPSSPQHSPGSSSNHYSI
GSSSYSQTPAPYSPNMSSYSPSSPKYSPTSPVYTSSSPTYSPSSPAYSPTPQGYSPSSPA
SPTYSPTSPSYDDSNED
NT seq
5634 nt
NT seq
+upstream
nt +downstream
nt
atgagtggagattcgaaggcgccattgcgcacggtaaagcgcgtccagttcggcatcctg
tcgccggatgagatccgtcggatgtcggtaacggagggtggcatacagtacgcggaaacg
atggaaggcggccggccgaagctgtgcggattgatggacccccggcaaggtgtgatcgaa
cgcacatcgcgctgtcagacgtgtgcgggcaatatgaccgaatgcccgggccatttcgga
cacatcgatctagcgaaaccggtgtttcacatcgggttcatcacgaagacgatcaagatt
ttgcgctgcgtgtgcttttactgctccaagatgcttgtttcgccgcaaaacccaaagatc
aaggagattgtgctgaaatccaaaggccagccccgcaagcgcctcgcgtacgtgtacgat
ctgtgcaagggcaagaaaatctgcgagggcggcgaggatatggacatgtcgaaggaaccc
acgccggagggcacgaagaagcagggccacggaggctgcggtcactatcagccttcgatc
cgccgtaccgggctggatttgatggccgagtggaaggacgtgaacgatgagaatcaggag
aaaaagatccaggtatcggcggagcgagtttacgaaatcctgaagcacattactgacgaa
gaatgtttcgtgctcggcatggatccaaagtttgcgcgccccgattggatgatcatcacg
gtactgccggtgccaccgctcgcggtccgccctgccgtcgttatgttcggcgccaccaag
aatcaggacgatttaacgcacaagctgtccgacatcatcaaagcgaacaacgagctgaag
aagaacgaggcaaccggtgcggcggcccacgtcattgcggaaaacattaagatgctccaa
ttccacgtcgcgacgctagtggacaacgatatgcccggtatgccgaaagcgatgcagaaa
agcggcaagccgctgaaagcgatcaaagcccgcctgaagggcaaggaaggtcgtattcgt
ggtaatttgatgggaaagcgtgtggatttctccgcccgtaccgtcattacgcccgatccg
aatctgcgcatcgatcaggtgggtgtgccacgatccgtcgcgcagaacatgaccttcccc
gagctggtgacgccgttcaacatcgatcggatgcaggagctggtgcgcagaggcaactcg
cagtacccgggcgccaagtacattgtgcgcgacaatggggagcgtatcgatttgcggttc
cacccgaagtcgtccgacctgcatctgcagtgcggttacaaagtcgagcgccatctgcgt
gatgacgatctggtcatcttcaaccgtcagcccacgctccacaaaatgagtatgatgggg
catcgtgtgaaggtgctaccgtggtcaacgttccggatgaatctgagctgcacctcgccg
tacaatgccgatttcgatggcgacgaaatgaacctgcacgtaccgcagtcgatggaaacg
cgtgccgagatcgagaacattcacatcacccctcggcagatcattacgccgcaggccaac
aaacccgtcatgggcattgtgcaggatacgctgacggccgtgcgcaagatgaccaaacgt
gatgtgttcatcgagaaggagcaaatgatgaatttgctcatgtttctgccgacgtgggac
ggcaaaatgccgcagccctgcattctcaagccgaaaccgctgtggacgggtaaacagatc
tttacgctcatcattccgggcaacgtgaacatgatccgcacgcattccacccatccggac
gaggaggacgacgggccgtacaagtggatttcgcccggcgacaccaaggtaatggtcgag
cacggcgatctgattatgggcatcctttgcaagaagacgctcggtacgtcggccggttcg
ctgctgcatattgtgttcctggagctgggccacgaaatagccggccggttctacggtaac
attcagacggtcgtcaacaactggttgctgctggagggccacagtatcggtatcggggac
acaattgccgatccccagacgtacgccgaaattcagcgcgcaattaagaaagccaaggag
gacgtgataggcgtgatccagaaggcgcacaacatggaactggaaccgaccccgggtaac
acgctgcgtcagaccttcgagaaccaggtaaaccgtatcctgaacgatgctcgagacaaa
accggtggttcggccaagaagtcgcttaccgagtacaacaatctgaaggcaatggtcgtt
tccggttcgaaaggttccaacattaacatttctcaggttatcgcttgtgtcggacagcaa
aacgtggagggtaagcgtattccgttcggcttccgtaaacgcaccttgccccacttcatt
aaggacgattacggtcccgagtcgcgtggtttcgtagaaaactcgtaccttgccggactg
acaccgaccgagttctacttccacgccatgggtggtcgtgaaggtctgatcgataccgct
gtcaaaacggcggaaaccggttacatccagcgtcgtctgatcaaggctatggagtcggta
atggtaaactacgatggaacggtgcgtaactccgtcggccagctgattcagctgcgttac
ggcgaggacgggctgtgcggcgaaacggtcgagttccagaatttgcccaccattaagctg
tcgaacaaggtgttcgagaagcggtatcggttcgatccgacgaacgagcgaacgctgcga
aggatctttaacgaggacgttatcaaggagcttaccgaatcgtcctcggtcatacaggag
attgaggccgagtatgagcagctgctgcgcgatcgagaagcactgcgacagatcttcccg
aacggtgattcgaaggttgtgctgccctgcaatctgcagcgtatgatatggaacgtgcag
aaaattttccacatcaacaagcgcctgccgacggatctgtccccgctaaaggtcattcag
ggtgtgcgagatctcctccagcgctgtgtcattgtggccggcaccgatcgtctgtcgaag
caggccaacgaaaacgcaaccctgctgttccagtgtctggtccgctcgacgctctgcacc
aagtacgtggcggaggagttccgtctgaacaacgaagcgtttgagtggttgattggagaa
atcgagacgcgcttccagcaggcacaggtcaacccgggcgagatggtcggtgccctggcg
gcgcaatcgctcggcgaaccggccacccagatgacgctgaacacgttccactttgccggt
gtgtcgtccaaaaacgtaacgctcggtgtgccacgtctgaaggagattatcaacatttcc
aaacgtcccaaggcgccttcgctgaccgtgttcctgacgggcggtgcggcacgcgacgca
gagaaggccaagaatgtgctgtgtcggctggaacacacgacactgcgtaaggtaacggcc
aacacggcgatttactacgatcccgatccgcagcgcacggtgatcgcggaagatcaggag
tttgtgaacgtgtactacgagatgccggacttcgacccgacccgcatctccccgtggctg
ctccgtatcgagctggaccgtaagcgtatgacggacaaaaagctcacgatggaacagatc
gcggagaagatcaacgccgggtttggggacgatttgaactgcattttcaacgacgacaac
gcggacaagcttgtgctgcgcatccgcatcatgaacgaggacaacaagttccaggaaagc
gaagaggaaaacatggacaagatggaggacgacatgttcctgcggtgcatcgaggcgaac
atgctgtcggacatgacgctgcagggcatcgaagcgatcggcaaagtgtacatgcatttg
ccgcaaacggacgcgaagaagcgcatcgtcattacgcccgagggcgagttcaagccgatc
ggtgaatggttgctggaaacggacggcacgtccatgatgaaggtgctgagcgagcgggac
gtcgatccggtgcgtacgtacagtaacgacatctgtgagattttctccgtactgggcatc
gaggcggtgcgaaagtcggtcgagaaggagatgaacaacgtgctgcagttctacggtttg
tacgtaaactatcgacatttggcgctgctttgcgacgtcatgacggcgaagggccatctg
atggccatcacccgtcacggtatcaatcgacaggatacgggtgcgctgatgaggtgttcc
ttcgaggagacggtcgatgtgttgaacgatgcagcggcgcacgctgaggtggatccgatg
cgtggtgtgtcggagaacatcatcctgggacagttgccgcggatgggcacgggttgcttc
gatttgctgctggacgcggaaaagtgtaaactgggaatggaaattccacacacgtcgatc
ctgggcgggacgggaatgttcttcggctcggctgcgacaccgagcatgacaccttggcag
caatcggccacccctgggtacgggggctggtctccgtctggcccggccagtggaatgacg
cccggtggtccaagcttctccccgtcagcacagtcggatgcttccgggatgtcaccatcg
tcgtggtccccaatccgtggatcaccgagctcgcctggaccgtcgatgtccccgtatcca
ccatcatcgccatcgatgtcgccgtcgtactcaccgagcagccccggttacgctccaaac
tcaccaggtggagcatccccttcgtactccccgaccagtccctgctattcgccaccgagc
ccgcagtattcgccgggaagctccaactattccccgagcagtcccaacattcactcggcc
acgcagaactattcgccgacatcgcccagctattccccgatgtcgccgatgcatccgacg
agcacgtccaactttgccagcccgggctattcgccaacaagtcccttgtactccccaacc
tcacccagctactcaccttcctcgcccgtcttttccccaaccagcccttcctactcgccc
tccagcccttcgtactctcccacaagtccttcctactccccgaccagtccgtcctactct
cccacatcgcccaacttcacaccggtcactccatcgtactcgccatcgagtccgaactat
tcgcccacctctccacactactctcccgcttcgcccagctattccccttcgtccccgaag
tattcgccaacatcgccgagctattcgccgacctctccgtcgtacatcggaagtcctcac
tacacaccggccagtccacagtatgggcaagccagcccgaactattcacccacttcgccc
agctattcgccctcgtcgccacagcactcgccgggcagtagcagcaatcactacagcatt
ggatcgtcctcctactcgcaaacgccggccccgtactcgcccaacatgtcctcgtactcg
cccagcagcccgaagtactcgccgacgagcccggtctacacgtccagctcgccgacgtac
tctccctcctcaccggcctactcaccaacgccccagggttacagtccgtcgagtcctgcc
agccctacctactcaccgaccagtccctcgtacgatgatagcaacgaagactaa
DBGET
integrated database retrieval system
