Aethina tumida (small hive beetle): 109605616
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Entry
109605616 CDS
T06105
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
atd
Aethina tumida (small hive beetle)
Pathway
atd03020
RNA polymerase
atd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
atd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
109605616
09124 Replication and repair
03420 Nucleotide excision repair
109605616
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atd03021
]
109605616
03400 DNA repair and recombination proteins [BR:
atd03400
]
109605616
Enzymes [BR:
atd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
109605616
Transcription machinery [BR:
atd03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
109605616
DNA repair and recombination proteins [BR:
atd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
109605616
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
109605616
NCBI-ProteinID:
XP_019877770
LinkDB
All DBs
Position
1:join(62798592..62798669,62802856..62803125,62803186..62803495,62803611..62804124,62804181..62804312,62804374..62806073,62806133..62806338,62806590..62807952,62808033..62809156)
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AA seq
1898 aa
AA seq
DB search
MAASDSKAPLRTVKRVQFGILSPDEIRRMSVTEGGIRFPETMEAGRPKLGGLMDPRQGVI
DRHSRCQTCAGNMTECPGHFGHIELAKPVFHVGFVTKTIKILRCVCFFCSKLLVSPNNPK
IKEVVMKSKGQPRKRLAFVYDLCKGKNICEGGDEMDVGKEGEDTTGKKQGHGGCGRYQPN
IRRTGLDLTAEWKHINEDTQEKKIALTAERVWEILKHITDEECFILGMDPKYARPDWMIV
TVLPVPPLPVRPAVVMHGSARNQDDLTHKLADIIKSNNELQRNEAAGTAAHIIQENIKML
QFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPD
PNLRIDQVGVPRSIAQNMTFPEIVTPFNFEKMLELVQRGNSQYPGAKYIVRDNGDRIDLR
FHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTS
PYNADFDGDEMNLHVPQSMETRAEVENLHITPRQIITPQSNQPVMGIVQDTLTAVRKMTK
RDVFIEKEQMMNILMFLPIWDGKMPRPAILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHP
DDEDDGPYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICMLELGHEVCGRFYG
NIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPG
NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQ
QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDT
AVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQYLPTVK
LSNKAFEKKFRFDPSNERYLRRVFNEDVIKQLMGSGEVISELEREWEQLQKDREALRQIF
PSGDSKVVLPCNLHRMIWNVQKIFHINKRAPTDLSPVRVIQGVRELLRKCVIVSGEDRLS
KQANENATLLFQCLVRSTLCTKCVAEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGAL
AAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARD
AEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPW
LLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDGKFG
EGADEEVDKMDDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQTDSKKRIVITEAGEFK
AIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSVEKEMNAVLSFY
GLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVD
PMRGVSENIILGQLPRMGTGCFDLLLDAEKCKMGLSIPQANGGDIMNSGMFFGSAATPSM
SPGGAMTPWTQAATPYLGNVWSPHNLMGSGMTPGGPAFSPSAASDASGMSPGYGAWSPTP
NSPAMSPYMASPHGQSPCYSPSSPAFQPTSPSITPTSPGYSPSSPGYSPTSPNYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYSPSSPRY
TPTSPNYSSTSPSYSPSSPQYSPASPSYSSSSPKYSPTSPSYSPTSPSFGGGSPQYSPTS
PSYSPTSPNYSPSSPQHTPAASSRYSPSSPNYSPSSPTYSPTSPQYSPHSTKYSPTSPTY
TPTSPSYSPASQAYSPNPPRYSPSSPSYSPTSPGQDQD
NT seq
5697 nt
NT seq
+upstream
nt +downstream
nt
atggctgccagtgacagtaaagctccccttagaacggttaaaagagtgcagtttggtatc
cttagtcccgatgaaattcgtcgcatgtcagtcacagagggcggtatccgcttcccggag
acgatggaagcgggccgccccaaattgggcggtctcatggacccacgacagggagttatt
gaccgtcactcccggtgtcaaacttgcgccggtaacatgaccgaatgccctggtcatttt
ggacacatcgaactggcaaagccagtgttccatgtgggcttcgtaacaaaaaccataaaa
attttaagatgcgtttgctttttctgtagcaaactgttagtcagtccgaataatccaaaa
ataaaagaggttgtgatgaagtcaaaaggtcaacctagaaagaggttggcttttgtgtac
gacctttgcaaaggaaagaatatttgcgaaggtggtgatgaaatggatgtcggtaaggaa
ggtgaagacaccacaggaaagaaacaaggtcatggtggttgcggcaggtaccagcccaat
attaggcgaacaggcctagacttaactgcagaatggaaacacataaatgaagacactcaa
gagaagaaaattgccttaacggcagaaagagtgtgggaaattttaaagcatattacagac
gaggaatgtttcattctgggaatggatccgaaatacgcgcgtccggattggatgatagtc
acggtattgccggtaccgcctttacccgtgcgaccagcagtcgtgatgcacggttcggcc
aggaatcaggacgatttgacacacaaactggccgacattatcaaatcgaacaacgagctg
caacggaacgaagctgctggaactgctgcacacattattcaagaaaatatcaagatgttg
cagttccacgtggctactttggttgacaacgacatgcctggtatgccaagggcaatgcaa
aaatccggcaaacctttgaaagcaataaaagctcggctgaaaggcaaagaaggacgaatc
agaggaaatcttatgggtaaacgtgtggatttctccgcacgtactgtaatcacaccggat
ccgaatcttcggatcgatcaagtcggtgtgcccagaagtatagcacagaatatgacgttt
ccagaaattgtgacaccattcaactttgaaaagatgctggaattagtgcaaagaggtaac
tcacaatatcccggcgcaaaatacattgttagagacaacggtgacagaatagatttaagg
tttcatcctaagccatccgacttgcatttacaatgcggttacaaagttgaaaggcatata
cgtgacggagacctggtaatattcaaccgtcaacctactcttcacaagatgagtatgatg
ggtcacagagtaaaagtattgccgtggtccacatttcgcatgaacttgtcctgtacttcg
ccttacaatgccgattttgatggagatgaaatgaatctccacgtaccacaaagtatggag
acgagagcggaggtcgagaaccttcacattacccctagacaaattattaccccccaatcc
aatcaacccgttatgggtattgtacaagataccctcacagctgtaagaaaaatgaccaaa
agagacgtgtttattgaaaaggaacagatgatgaacattcttatgttcttacccatttgg
gatggtaaaatgccccgaccggccattttaaaaccgaaaccgttatggactggtaaacaa
atcttttccttaatcattcctggaaacgtgaacatgatccgcacccattcaacacatccg
gacgatgaagatgacggcccttacaaatggatttctccaggagacactaaagttatggta
gaacacggcgaactcattatgggaatattgtgtaaaaaatcactgggtacatcagccggt
tctttacttcacatatgtatgttggaattgggtcacgaagtatgtggcagattctacggt
aacatccagacggtgattaacaattggttgctcctcgaaggtcacagcattggtatcggt
gatacaattgctgatccccaaacctatttggaaattcagaaagcaatcaagaaagctaaa
gaagatgtaatagaggttattcaaaaagcccacaacatggaattagagccgacaccaggt
aatacacttcgtcagactttcgaaaatcaagtaaacagaattttgaacgacgctcgtgac
aaaactggtggttctgccaaaaagtctcttactgaatacaacaacttaaaggctatggtg
gtgtcaggttccaaaggttccaacattaatatttcccaggttattgcctgtgtaggacaa
caaaacgtagaaggaaaacgtataccgtttggtttccgtaagagaacactgccccatttc
atcaaagacgattatggtccggaatccagaggattcgtcgaaaattcatatctggctggt
ttaaccccatctgagttctacttccacgccatgggaggtcgtgaaggtcttattgatact
gccgtaaaaaccgccgaaactggttatattcagcgtcgtttgattaaggctatggaatct
gtaatggttcattacgatggaacagttcgtaattcagttgggcaacttattcagttgcgt
tacggtgaagacggtctctgtggagaaatggtggagttccagtatttacctaccgtcaaa
ctcagcaataaggccttcgaaaagaaattcaggttcgatccgagcaacgagcgttattta
aggagagtcttcaatgaagatgtcattaaacaattgatgggatccggtgaggtcatttca
gaattggaaagggaatgggagcaactgcagaaggatagggaagcgctcagacaaattttc
cctagcggcgattctaaagttgtattaccctgtaatttgcatagaatgatttggaatgta
cagaaaattttccatatcaataagagggctccaaccgatttatcgccggtcagagtaatt
caaggtgtacgagaattattgaggaaatgtgtcatagtatcaggtgaagataggctttca
aaacaggcgaatgaaaacgccacattacttttccaatgtttggtgaggtctacattatgc
acaaagtgtgtggcagaggagtttagattgagcactgaagcttttgaatggctaattggc
gaaattgaaacacggtttcaacaagctcaggcaaatcctggtgagatggtgggtgctttg
gccgcccagtcactcggagaaccggccactcagatgacattgaacactttccactttgct
ggtgtatcctccaaaaacgtaacattgggtgtgccgcgtcttaaagaaattattaatatt
tcgaagaaacctaaagctccctcactgactgtatttttaactggggctgcagcccgtgac
gctgaaaaagctaaaaatgtgttgtgtcgattggaacacacaacgcttaggaaggtaact
gctaacaccgccatctactacgatcctgatccgcagaatacggtaatcccagaagatcaa
gaattcgttaatgtgtattacgaaatgcctgattttgatcctacccgtatttcaccatgg
ttgcttcgtatagagttggatcgaaagaggatgacggataagaaacttactatggaacag
atagccgaaaaaattaacgccgggttcggtgacgacttgaactgcatatttaatgacgac
aatgctgaaaaactagtgctacgtatccgtattatgaacagtgatgatgggaaattcggc
gagggagcagacgaagaagtcgataaaatggatgacgacatgtttttgaggtgtattgaa
gctaacatgttgagcgacatgactcttcaaggtattgaagcgatttctaaggtatatatg
catctgccacaaacggattcgaaaaagagaattgtgattaccgaagctggtgaattcaaa
gctatcgctgaatggttgctggaaactgatggtaccagtatgatgaaagttctcagtgaa
agagatgtagatcccgtacgtacattctctaacgacatttgcgaaatcttctccgtattg
ggtatcgaggctgtgcgaaaatcagtggaaaaagaaatgaacgctgtattgtcgttctac
ggtttgtacgtaaactatcgtcatttggctttgctttgtgacgtaatgacagccaaaggt
catttgatggccatcactcgtcacggtattaacaggcaggatacgggcgctcttatgaga
tgttccttcgaagaaacagtggacgtgctgatggatgccgcttcacatgccgaagtagac
cccatgagaggcgtctctgagaatattattttgggacaattgcccagaatgggaacaggt
tgcttcgatttgttgctggatgctgaaaaatgtaagatgggattgtcgatacctcaggca
aatggcggtgacataatgaattcgggcatgttctttggatccgcggctacacctagtatg
agccccggaggtgccatgactccttggactcaagctgctactccttatctaggaaacgtc
tggtctccacacaatttgatgggaagtggtatgacaccaggaggcccggctttctcacct
tcagcagcttccgacgcatcgggcatgtctccaggatatggagcttggtctccaacacca
aactcaccagccatgtctccgtacatggcgtctccgcacgggcaaagtccatgttacagt
ccatcgagtccagcgttccaaccgacatccccctccattacacccacatctccaggttat
tcacctagctccccaggttattcacctacaagtcccaattacagtcctacaagtccaagt
tactcgccgacgagtcccagttacagtcctacgagcccgagttactctcctacaagtccg
agttactcacccacttctccttcatatagtccgacttccccaagctattcgcctacttcc
ccttcatacagtcccacatcgccaagttactcacctacttctccatcatacagtcctact
tcaccgagttactctcctacttctccgtcatatagtcccacttctcccagttattcacct
acttctccatcctacagccccacttcaccgagctactcccctacttctccgtcctacagt
cccacatctccgaattattctccaacatctccaaattattcaccatcctcaccgaggtat
actcctacatctccgaactactcatcaacttctcccagctattcaccttcttcaccacag
tactcgcccgcttctccgagttactcgtcatcctcaccaaaatattcaccaacatctccg
agctactccccaacgtctccgtcgttcggaggaggaagtccacaatattctcctacgtcg
ccgagttattcaccgacctctccaaattattcaccttctagtcctcaacacactccggct
gcgagttcacgttattcaccatcctctccaaattattcccccagctcaccgacttactcc
ccaacatctccccaatattccccacatagcactaaatattctcctacttcccctacttat
acgcctacttcaccgtcttattcaccagcttctcaagcatattcaccaaatcctcccaga
tactcgccctcgtcacctagttattcaccgaccagccccgggcaggatcaagattaa
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integrated database retrieval system
