Arabidopsis thaliana (thale cress): AT5G39930
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Entry
AT5G39930 CDS
T00041
Symbol
CLPS5
Name
(RefSeq) CLP1-similar protein 5
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
AT5G39930 (CLPS5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT5G39930 (CLPS5)
Enzymes [BR:
ath01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
AT5G39930 (CLPS5)
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
AT5G39930 (CLPS5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
nSTAND3
AAA_22
DUF1611
GTP_EFTU
AAA_29
AAA_24
Motif
Other DBs
NCBI-GeneID:
833990
NCBI-ProteinID:
NP_198809
TAIR:
AT5G39930
UniProt:
Q9FLE2
A0A654G6J3
LinkDB
All DBs
Position
5:complement(15985025..15987339)
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AA seq
424 aa
AA seq
DB search
MFGPQIRRVKLEKQSELRIELQPTSPLRLRLLDGKAEIFGYELPHEVWITFPPLMTFAVF
TWYGATIEIDGITGNEYISCETPMVNYLGLHNSLQVQRHRVTSSTRDSASSQEGPRVIIV
GDIDSGKSTLAKMLLNWAVKDGWKPTFVDLNVGQSSITIPGTIAAAPIKMLVDPVEGFPL
DKALIHYFGLTNPSVNLRLYRTLVEELARELKEEFSANAESRASGMVIDTMGFIVREGYA
LLLHAIRTFNASLVIVVGQEEKLVYDLKKNLKFKKNLQVLNLEKSEGVFSRSSDFRKTLR
NSNIQNYFYGVTNDLTVYTKTVKFSDVQVYRIGDFRVSGSTSAHQRGNDPLKITLVTIDE
HLVNKVLAISYAIKPDQIISSIVAGFVCIKNVDISEERITYVSPSAAELPSKILILGTLT
WHVT
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgtttggtcctcaaataagacgagtgaagttggagaaacagagcgaactcagaatcgaa
ttgcaacctacttcacctctcagactccgtttgctcgatggcaaggctgagattttcggc
tatgaacttccacatgaagtttggatcacatttccacctctcatgacatttgcggttttt
acatggtatggtgcaactattgaaatagatggtatcacaggaaatgaatatatatcatgt
gagacgcctatggtgaactatcttggactgcacaactctctacaagtacaaagacatcgt
gttacttcctcaacaagagattctgcatcttcacaggagggaccaagggttatcattgta
ggggatatagactctgggaagagcacattggctaaaatgcttctgaattgggctgtaaaa
gatggttggaaaccgacatttgttgatcttaatgtcggtcaaagctcgattaccatacca
ggaactatcgctgctgctcctatcaaaatgcttgtggatcctgttgaagggtttcctctt
gataaggctcttattcactactttggtctcacaaatccaagtgtaaaccttagactgtac
agaacccttgtggaagaacttgccagagaattaaaagaagagttttccgcaaacgctgaa
tctagagcttctgggatggtgattgacactatgggatttatcgttcgtgaaggctatgcg
ctgcttctccatgcaataaggacgtttaatgcgtctttagttattgtcgttggtcaagag
gaaaaactcgtctatgatctgaagaaaaatctaaaattcaagaagaatctacaagtcttg
aatcttgagaagtcagaaggagtcttctctaggagctctgactttcgcaaaacattgagg
aacagtaatattcagaattatttctatggagtcaccaacgatctcactgtctacacaaaa
accgttaagttcagtgatgtgcaagtatatcgaatcggtgattttagagtgagtggttca
acttctgctcatcaaagaggaaatgaccctttgaagatcacacttgtgacaattgacgaa
catcttgtgaacaaagttcttgctatctcatacgccataaaacctgatcagatcatctca
agcattgttgctggatttgtgtgtatcaaaaatgttgatattagtgaagagagaattaca
tatgtctctccatcagctgcggaattgcctagcaaaatattgatcctagggactttgaca
tggcatgtaacttga
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integrated database retrieval system
