Amycolatopsis thermalba: L1857_17685
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Entry
L1857_17685 CDS
T08681
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
athm
Amycolatopsis thermalba
Pathway
athm03030
DNA replication
athm03410
Base excision repair
athm03420
Nucleotide excision repair
athm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
athm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L1857_17685 (polA)
03410 Base excision repair
L1857_17685 (polA)
03420 Nucleotide excision repair
L1857_17685 (polA)
03440 Homologous recombination
L1857_17685 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
athm03032
]
L1857_17685 (polA)
03400 DNA repair and recombination proteins [BR:
athm03400
]
L1857_17685 (polA)
Enzymes [BR:
athm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
L1857_17685 (polA)
DNA replication proteins [BR:
athm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
L1857_17685 (polA)
DNA repair and recombination proteins [BR:
athm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
L1857_17685 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L1857_17685 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
HHH_2
HHH_5
DNA_pol_lambd_f
Motif
Other DBs
NCBI-ProteinID:
UQS27897
LinkDB
All DBs
Position
3678217..3680859
Genome browser
AA seq
880 aa
AA seq
DB search
MAYRAFFAVPADRFKTSTGQVTNAVFGFTSMLINLLRDEQPTHLAVAFDVSRQTFRSETF
ADYKATRTSTPDEFKGQVDLVKDVLGVLGIPVLTKENYEADDIIATLTTQATAQGYQVLI
CTGDRDALQLVDDAVTVLYPRKGVSDLVRYDPAGVSEKYGLTPSQYPDFAALRGDPSDNL
PGIPGVGEKTATKWIQQFGSLAALIDRVDEVKGKVGDALRAHLDSVMLNRQLTELVRDVP
LDATPDDLALKPWDRDAVHRLFDELEFRVLRDRLFQTLSSAEPEAESGFEVEGAAVPAGG
LAAWLSRHTKAGRTVGLSFRTTGSSVRSDIQSITLASAGGEAGYVDVTTLDEADEQALAA
WLADPAIPKAGHALKVPLHALRARGWKLAGLAMDTELAAYLVRPGQRSFELDDLVLRYLQ
RELRNDSDSGDGQLSLLDGDDGDQKLVQGELVRASAVAELAGALAGELEKISGTTLLNDI
ELPLLQVIAEVEAAGVAVDIEQLTALEAHYGARVKQAAEAAYGVIGKQVNLGSPKQLQVV
LFDELGMPKTKRTKTGYTTDAEALQTLFEKTEHPFLQHLLEHRDATRLKTTVEGLLKSVA
DDGRIHTTLHQTIAATGRLSSVDPNLQNIPIRTEEGRRIRDAFVVGEGYAELLTADYSQI
EMRIMAHLSEDAALIEAFQSGFDFHAATAARVFGVDPADVTGPQRAKIKAMNYGLAYGLS
AYGLSQQLRISTEEARGLMDEYFARFGGVRDYLHSVVVEAGKVGYTETIFGRRRYLPDLN
SDNRQRREMAERMALNAPIQGSAADIIKVAMIGVHRAIAEAGLSSRVLLQVHDELIVEVC
EGERDRVEELVRREMGAAYELAVPLEVSVGFGRSWNEAAH
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atggcctaccgggcgttcttcgcggtcccggccgaccggttcaagacctccaccggccag
gtcaccaacgcggtgttcgggttcacctcgatgctcatcaacctgctgcgcgacgagcag
cccacgcacctcgcggtggcgttcgacgtgtcgcggcagacgttccgctcggagaccttc
gccgactacaaggccacgcgcacgtccacgccggacgagttcaaggggcaggtcgacctg
gtcaaggacgtgctcggggtgctcggcatcccggtgctgaccaaggagaactacgaggcc
gacgacatcatcgccacgctcaccacgcaggccacggcgcagggctaccaggtcctcatc
tgcaccggcgaccgggacgcgctgcagctggtggacgacgcggtgaccgtgctgtacccg
cgcaagggcgtgtccgacctggtgcggtacgacccggccggggtgtcggagaagtacggg
ctcaccccgtcgcagtacccggacttcgcggcgctgcgcggcgacccgtcggacaacctg
ccgggcatcccgggggtgggggagaagacggccaccaagtggatccagcagttcgggtcg
ctggccgcgctcatcgaccgcgtcgacgaggtcaagggcaaggtgggcgacgcgctgcgc
gcccacctcgactcggtgatgctcaaccgccagctcaccgagctggtgcgggacgtgccg
ctggacgccacgcccgacgacctcgcgctcaagccgtgggaccgggacgcggtgcaccgg
ctgttcgacgagctggagttccgggtgctgcgcgaccggctgttccagacgctgtccagc
gccgagccggaggccgagtccgggttcgaggtggagggcgcggcggtgcccgccggcggt
ctcgcggcgtggctgtcccggcacaccaaggccggccggaccgtgggcctgtcgttccgc
accaccggatcgtcggtgcggtcggacatccagtcgatcaccctcgcctcggcgggcggc
gaggccggctacgtcgacgtcaccacgctggacgaggccgacgagcaggcgctggcggcg
tggctggccgatccggcgatccccaaggccgggcacgccctgaaggtgccgctgcacgcg
ctgcgggcgcgcggctggaagctcgccgggctggcgatggacaccgagctggccgcctac
ctggtccggccggggcagcggtcgttcgagctggacgacctggtgctgcggtacctgcag
cgcgagctgcgcaacgacagcgactccggcgacggccagctgtccctgctcgacggcgac
gacggcgaccagaaactggtgcagggcgagctggtccgcgccagcgcggtcgccgagctg
gccggcgcgctcgccggcgagttggagaagatcagcggcaccacgctgctgaacgacatc
gagctgccgctgctgcaggtcatcgccgaggtcgaggccgcgggcgtggcggtggacatc
gagcagctgaccgcgctggaggcgcactacggcgcccgcgtgaagcaggccgccgaggcc
gcctacggcgtgatcggcaagcaggtcaacctgggctcgcccaagcagctgcaggtcgtg
ctgttcgacgagctgggcatgcccaagaccaagcgcaccaagaccggctacaccaccgac
gccgaggcgctgcagacgctgttcgagaagaccgagcacccgttcctgcagcacctgctg
gagcaccgggacgccacccggctcaagaccacggtcgagggcctgctcaagtcggtcgcc
gacgacggccggatccacaccacgctgcaccagaccatcgccgccaccgggcgtctgtcc
tctgtggacccgaacctgcagaacatcccgatccgcaccgaggagggccgccgcatccgc
gacgccttcgtggtcggcgaggggtacgccgagctgctcaccgcggactacagccagatc
gagatgcggatcatggcgcacctgtccgaggacgcggcgctgatcgaggcgttccagtcc
gggttcgacttccacgccgccaccgcggcgcgggtgttcggcgtcgacccggccgacgtc
accgggccgcagcgggcgaagatcaaggcgatgaactacggcctggcctacgggctgtcg
gcgtacgggctgtcgcagcagctgcggatctccaccgaggaggcgcgcgggctgatggac
gagtacttcgcccggttcggcggggtgcgcgactacctgcacagcgtcgtggtcgaggcg
ggcaaggtcggctacaccgagacgatcttcggccgccgccggtacctgcccgacctcaac
agcgacaaccggcagcgccgggagatggccgagcggatggcgctcaacgcgccgatccag
ggcagcgcggccgacatcatcaaggtcgcgatgatcggcgtgcaccgcgcgatcgcggag
gcgggcctctcgtcgcgggtgctgttgcaggtgcacgacgagctgatcgtggaggtctgc
gagggcgagcgggaccgggtcgaggagctggtgcgccgcgagatgggcgcggcctacgag
ctggccgtgccgctggaggtgtcggtcgggttcggccggtcctggaacgaggcggcgcat
tga
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