Amborella trichopoda: 18423586
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Entry
18423586 CDS
T02990
Name
(RefSeq) DNA-directed RNA polymerase III subunit 1 isoform X1
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
atr
Amborella trichopoda
Pathway
atr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
18423586
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atr03021
]
18423586
Enzymes [BR:
atr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
18423586
Transcription machinery [BR:
atr03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
18423586
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
LPD30
zf-tcix
Motif
Other DBs
NCBI-GeneID:
18423586
NCBI-ProteinID:
XP_006828249
UniProt:
W1NKG9
LinkDB
All DBs
Position
Unknown
AA seq
1383 aa
AA seq
DB search
MDSEKEAFNFTKKPFVEDIGPRKIKSVQFCMLSGPEIVKAAETQVYKRDYYNRTDLKPAE
HGVLDTRMGFSTKSGSCATCFGDFQTCPGHFGYLKLALPVFHVGYFRTTIIVLQCICKSC
ARILLFEEERKQFLKKIRNPRAELHQKNDFVKKVIDKCKRVRICPRCGDYNGVVKKAGPT
FRISHDRSKANYDKLTKECKTAISQTKYSNSDFNMVENLTPQRALALFERMVDEDCDLLY
LYDRPEKLIITHIAVPPAGIRPTYQSGSRLNENELTTKLWEIVQINHTLIDHVNKGNLPQ
YYMDTWVLLQVRVALYINSELPSLPLNYQPSKFEGGLVQRLKGKQGRFRSNLEGKRVDFT
GRTVISPDPNLKITEVAIPRLMAQILTYKERVTIHNIEKLRQCVRNGPVKYPGANFVISG
GDTLSLRYGNKKRKADELKFGDFVERHLEDGEIVLFNRQPSLHRMSIMCHRARVMPWRTL
RFNESVCNPYNADFDGDEMNIHVPQTEEARTEALMLMGVQHNLCTPKNGEILVASTQDFL
TSSYLITRKDTFYDRATFSLMCSYMGDGMENIDLPTPALLKPVELWTGKQLFSVLIRPHA
HMKVYVNLSLMEKNYSKGGETMCANDGFVYIRNSELISGQLGKATLGNGNKDGLFSVLLR
DYNSHAAASCMNRLAKLSARWIGNHGFSIGIDDVLPGSHLTKQKEEQIKGGYSNCDAFID
AYDKGKLSLKPGCNAAQTLEAEITRVLNGIRDAAAKVCMEELHWRNSPLIMSQCGSKGSP
INISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKTPAAKGFVANSFYTGLTAAEFFF
HTMGGREGLVDTAVKTADTGYLSRRLIKSLEDLSTHYDDTVRNSSGTIIQFSYGDDGMDP
AKMEGKSGVPLNLDRLFMKIKATCPASVSASLSPSEISTIVNDRLSKHDMTPERGCSMAF
KEELSNFIKKRMDAIKKTRNMLGLDEDCVDKEKFSGLEHVAANISGISRQQLRVFLETCI
SRYHLKRIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEILGASKK
ISTPIITATLVCDNDEKSARIVKGRIEKTLLGEVAKTVKISVTPTQASINITLDMKRIEA
LQMAIDAKTVADSISENLKAKVSRTKLKVKPTFTLPDKLKILLPEIGRKEVLYSLHLLQS
LLPKIIVKGIPTVERAVINNVKGKLNLLVEGTNLLAVMGTPGVDGRNTTSNHIVEVEGTL
GIEAARKSIIDEIQYTMKSHGMSIDLRHMMLLADLMTFRGLVLGIQRFGITKMKESVLML
ASFERTADILFDATTRGRVDTIAGVSECIIMGVPMQIGTGILSVQQRPEQLAKLTYGPDP
IIC
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atggattccgagaaggaagcattcaacttcacaaaaaagccctttgtcgaagacatcgga
ccacgaaaaataaagagcgtccagttttgcatgctatctggacctgaaattgtgaaagct
gcagaaacgcaggtttataagcgtgattactataataggaccgatcttaagcctgccgaa
catggtgtacttgacactcgtatgggtttttcaactaaatctggttcatgtgccacctgt
tttggtgatttccaaacctgtccaggccattttggatacttgaagcttgctctaccagtt
tttcatgttggctactttaggaccacgataatcgttttgcaatgcatttgcaagtcatgt
gcacgtatacttctatttgaggaagaacgcaaacaatttctgaagaagatacggaatcct
agagcagagctgcatcaaaagaatgactttgtgaaaaaagtaattgataaatgtaaacgt
gtgcgcatctgccctcgttgtggagattataatggtgttgtgaagaaggccggtccaact
tttcgcatatctcatgatagatccaaggcaaattatgataaactaactaaagagtgtaaa
acggcaatctcacaaactaaatattcaaattcagactttaatatggttgaaaatcttacc
cctcaacgtgctcttgctctttttgaaagaatggtggatgaggattgtgatttgctgtat
ctatatgatcggcctgagaaactcatcataacacacattgcagtgccacctgcaggcatt
cgtcctacttatcaatcaggttctagactcaatgaaaatgaacttactactaaattatgg
gaaatcgttcagataaatcatactttgattgatcatgtgaacaagggaaatcttccacag
tattatatggacacttgggtgttgctacaagttcgggtggctttgtacataaatagcgag
cttcctagtcttccacttaactatcagcccagcaaatttgagggtgggcttgtacagcgc
cttaagggcaagcaggggcgctttcgttctaacttagaaggaaaacgtgttgattttact
ggccggactgttatttctccagatcccaatcttaagattacagaggttgcaattcccaga
ttaatggctcagatcttaacctataaggaacgtgtcaccattcacaatatcgagaagcta
aggcaatgtgttcgtaatggacctgtgaaataccctggggctaactttgtgatctctggt
ggtgacacactatcgctaaggtatggtaacaaaaaacgtaaagcggatgaactaaaattt
ggtgattttgtggagcgtcatttagaggatggagaaattgttctttttaatcgacagccc
agtctgcacagaatgtctattatgtgccatagggcaagagtgatgccctggagaacattg
cggttcaatgaatcagtgtgcaatccatataatgctgattttgatggtgacgagatgaac
atacatgttcctcagactgaagaggctcgtacggaagctctcatgctcatgggggtacaa
cacaatttgtgcacaccaaagaacggagaaattttggttgcttccactcaagattttcta
acgtcttcatatcttataacaaggaaggacactttttatgatcgtgctactttctcgctt
atgtgttcctatatgggtgatggcatggagaatattgatttaccaacaccggctttactg
aagccagtggagctttggactgggaaacaactgtttagtgttctgattcgtccacatgca
cacatgaaggtttatgtaaatcttagcctcatggagaaaaattacagtaagggaggtgaa
acaatgtgcgctaatgatggatttgtttatattcgcaatagtgagctcatttctggtcaa
cttggaaaagctaccttaggaaatggcaataaagatggactgttttctgttcttttaaga
gactacaattctcatgctgctgcttcttgtatgaatcggcttgccaaactaagtgctcga
tggattggaaaccatgggttctcgattggaatagacgatgttctaccaggatctcatctc
acaaagcagaaagaagaacaaataaaaggaggatattctaattgtgatgccttcatagat
gcgtatgataagggaaagctctctttgaagcctggttgtaacgcggctcaaacactagaa
gctgaaataactcgtgtcctaaatggaattcgagatgcagctgcaaaggtctgtatggaa
gaactacattggaggaatagcccattgattatgtcacaatgtggttcgaagggttccccc
ataaatattagtcaaatgattgcttgtgttggccagcaatctgtaggaggtcgccgtgcc
cctaatggatttattgaccgcagtcttcctcactttcctcgaaatgacaaaacacctgct
gctaaggggtttgtggcgaattctttctacactgggttgacagcagctgagtttttcttt
catacaatgggtggccgggagggccttgttgatactgcggttaagactgctgatacggga
tacttgtcacggagattaattaaatccttggaggacctttcaacgcattatgatgataca
gtgcgtaattctagtggtactattatccagttttcttatggtgatgatggtatggatcca
gcaaaaatggaaggaaagagtggtgtaccattgaatttggaccgtttattcatgaagatc
aaggctacatgccctgcaagtgtttctgctagtttgtctccttcagaaatttcaaccata
gtgaatgacaggttatcaaaacatgatatgacccctgaaagaggttgctctatggctttc
aaagaggagttgtctaacttcattaaaaaacgcatggatgccataaagaaaaccaggaac
atgctaggactggatgaggattgtgtcgacaaagagaaattttccggtctagaacatgta
gcagcaaacatatctggtatatctcgtcaacagctgcgggtgttcttggaaacatgtata
tctcgttatcatttgaagagaattgaagctggtactgcaattggagctataggagcacaa
agtattggagaacctgggacacagatgacattgaaaaccttccactttgctggggttgca
agcatgaatattactcttggtgttcctcgaatcaaggaaatattaggggcatcaaaaaaa
atcagtaccccaatcattactgcaacacttgtctgtgataatgatgaaaaatcagcgcga
atcgtgaaaggtcgtatcgagaaaactcttcttggtgaggttgctaaaacggtgaaaatt
tctgtaacacccacgcaagcatccataaatattacacttgatatgaagaggattgaagct
ttgcaaatggctattgatgcaaagactgttgctgattccatttcagaaaatttaaaggca
aaagtgtcgcggacaaagctaaaagtgaagcctacttttaccctgccagacaagttgaag
attcttcttcctgaaattggtagaaaagaggttctgtattctcttcacttgttgcaatcc
ttgcttccaaagattatagtaaagggcattccgactgttgagcgtgcagtcattaacaac
gtcaagggcaagcttaatctgcttgtggaaggtacgaatctccttgctgtaatgggtaca
ccaggagtggacgggagaaataccactagtaatcatattgttgaggtggagggaacactg
ggtattgaggctgcaaggaagagtataattgatgagatacaatacaccatgaaaagccat
ggaatgagcattgatctacgtcatatgatgcttcttgcagatttgatgactttcaggggt
ttggtgcttggcatccaaaggtttggcattaccaagatgaaagagagcgtgctgatgctt
gcatcatttgagaggacggctgacattctcttcgatgcgacaacccgtgggagggttgac
acaattgcaggagtgagtgagtgcatcatcatgggtgtacctatgcagattggaaccgga
atactcagtgttcagcaacggcctgaacagcttgcaaaattgacttatggtccagaccca
attatttgctga
DBGET
integrated database retrieval system
